BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSMEG_4267
         (139 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           12,507,864 sequences; 4,236,830,644 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|A0R056|A0R056_MYCS2 Tax_Id=246196 SubName: Full=Probable cyto...   211   3e-53
tr|Q1B6T0|Q1B6T0_MYCSS Tax_Id=164756 SubName: Full=Putative cons...   190   6e-47
tr|A3Q1Q9|A3Q1Q9_MYCSJ Tax_Id=164757 SubName: Full=Putative cons...   190   6e-47
tr|A1UI95|A1UI95_MYCSK Tax_Id=189918 SubName: Full=Putative cons...   190   6e-47
sp|P64947|COX4_MYCTU Tax_Id=1773 (ctaF)RecName: Full=Probable cy...   181   3e-44
sp|P64948|COX4_MYCBO Tax_Id=1765 (ctaF)RecName: Full=Probable cy...   181   3e-44
tr|C6DPK9|C6DPK9_MYCTK Tax_Id=478434 SubName: Full=Conserved mem...   181   3e-44
tr|C1AQB4|C1AQB4_MYCBT Tax_Id=561275 SubName: Full=Putative tran...   181   3e-44
tr|A5WPG9|A5WPG9_MYCTF Tax_Id=336982 SubName: Full=Conserved int...   181   3e-44
tr|A5U4M7|A5U4M7_MYCTA Tax_Id=419947 SubName: Full=Putative cons...   181   3e-44
tr|A4TBI7|A4TBI7_MYCGI Tax_Id=350054 SubName: Full=Putative cons...   181   3e-44
tr|A1KKP1|A1KKP1_MYCBP Tax_Id=410289 SubName: Full=Probable cons...   181   3e-44
tr|D6G632|D6G632_MYCTU Tax_Id=478435 SubName: Full=Conserved mem...   181   3e-44
tr|D6FWM0|D6FWM0_MYCTU Tax_Id=611304 SubName: Full=Conserved mem...   181   3e-44
tr|D6FI95|D6FI95_MYCTU Tax_Id=611303 SubName: Full=Conserved mem...   181   3e-44
tr|D6F5Y0|D6F5Y0_MYCTU Tax_Id=611302 SubName: Full=Conserved mem...   181   3e-44
tr|D5Z568|D5Z568_MYCTU Tax_Id=537209 SubName: Full=Conserved int...   181   3e-44
tr|D5YS06|D5YS06_MYCTU Tax_Id=515616 SubName: Full=Integral memb...   181   3e-44
tr|D5YH28|D5YH28_MYCTU Tax_Id=520140 SubName: Full=Putative unch...   181   3e-44
tr|D5Y5N3|D5Y5N3_MYCTU Tax_Id=520141 SubName: Full=Putative unch...   181   3e-44
tr|D5XUW3|D5XUW3_MYCTU Tax_Id=515617 SubName: Full=Conserved mem...   181   3e-44
tr|A4KIX0|A4KIX0_MYCTU Tax_Id=395095 SubName: Full=Conserved int...   181   3e-44
tr|A2VJU0|A2VJU0_MYCTU Tax_Id=348776 SubName: Full=Putative unch...   181   3e-44
tr|A1TB07|A1TB07_MYCVP Tax_Id=350058 SubName: Full=Putative cons...   180   6e-44
sp|Q73YL6|COX4_MYCPA Tax_Id=1770 (ctaF)RecName: Full=Probable cy...   178   2e-43
tr|A0QF08|A0QF08_MYCA1 Tax_Id=243243 SubName: Full=Probable cyto...   178   2e-43
tr|D5P714|D5P714_9MYCO Tax_Id=525368 (ctaF)SubName: Full=Cytochr...   178   2e-43
tr|B2HGW7|B2HGW7_MYCMM Tax_Id=216594 SubName: Full=Conserved int...   175   1e-42
tr|A0PTN3|A0PTN3_MYCUA Tax_Id=362242 SubName: Full=Conserved int...   175   1e-42
sp|Q9CCF0|COX4_MYCLE Tax_Id=1769 (ctaF)RecName: Full=Probable cy...   175   2e-42
tr|B8ZQL5|B8ZQL5_MYCLB Tax_Id=561304 SubName: Full=Putative memb...   175   2e-42
tr|B1MNZ3|B1MNZ3_MYCA9 Tax_Id=561007 SubName: Full=Probable cyto...   172   9e-42
tr|D5ZG96|D5ZG96_MYCTU Tax_Id=537210 SubName: Full=Conserved mem...   154   3e-36
tr|C1A124|C1A124_RHOE4 Tax_Id=234621 (ctaF)SubName: Full=Putativ...   135   2e-30
tr|C3JJ99|C3JJ99_RHOER Tax_Id=596309 SubName: Full=Cytochrome c ...   135   2e-30
sp|Q5YZ36|COX4_NOCFA Tax_Id=37329 (ctaF)RecName: Full=Probable c...   132   1e-29
tr|Q0SHM3|Q0SHM3_RHOSR Tax_Id=101510 SubName: Full=Putative unch...   131   3e-29
tr|D5UY54|D5UY54_TSUPA Tax_Id=521096 SubName: Full=Cytochrome-c ...   131   3e-29
tr|D5PP90|D5PP90_COREQ Tax_Id=525370 (ctaF)SubName: Full=Cytochr...   130   4e-29
tr|C1AUA3|C1AUA3_RHOOB Tax_Id=632772 (ctaF)SubName: Full=Putativ...   130   7e-29
tr|D0LAX4|D0LAX4_GORB4 Tax_Id=526226 SubName: Full=Cytochrome-c ...   115   2e-24
tr|A4X9Z3|A4X9Z3_SALTO Tax_Id=369723 SubName: Full=Cytochrome-c ...   108   2e-22
tr|C6W9F7|C6W9F7_ACTMD Tax_Id=446462 SubName: Full=Cytochrome-c ...   106   1e-21
tr|A8LYC5|A8LYC5_SALAI Tax_Id=391037 SubName: Full=Cytochrome-c ...   105   2e-21
tr|C4RLQ5|C4RLQ5_9ACTO Tax_Id=219305 SubName: Full=Cytochrome c ...   103   7e-21

>tr|A0R056|A0R056_MYCS2 Tax_Id=246196 SubName: Full=Probable
           cytochrome c oxidase polypeptide 4;
           EC=1.9.3.1;[Mycobacterium smegmatis]
          Length = 139

 Score =  211 bits (536), Expect = 3e-53
 Identities = 105/139 (75%), Positives = 105/139 (75%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFEI                 MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEILTAFFALAAVVYAVLTAMFATGGVEWAGTTALVLTTGLTLITGTFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF
Sbjct: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           VITSVCGLVFEYYWGPEKH
Sbjct: 121 VITSVCGLVFEYYWGPEKH 139


>tr|Q1B6T0|Q1B6T0_MYCSS Tax_Id=164756 SubName: Full=Putative
           conserved integral membrane protein;[Mycobacterium sp.]
          Length = 139

 Score =  190 bits (482), Expect = 6e-47
 Identities = 91/139 (65%), Positives = 97/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MF  GGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFLTAFFALSAVVYATLTAMFGNGGVEWAGTTALVLTTGLTLIVGTFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPI+I+LSFSTAAVGAALWLPWL+ AG+ F
Sbjct: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPIMIALSFSTAAVGAALWLPWLLVAGIVF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           V+ S  GLVFEY+WGPEKH
Sbjct: 121 VLVSAAGLVFEYHWGPEKH 139


>tr|A3Q1Q9|A3Q1Q9_MYCSJ Tax_Id=164757 SubName: Full=Putative
           conserved integral membrane protein; Flags:
           Precursor;[Mycobacterium sp.]
          Length = 139

 Score =  190 bits (482), Expect = 6e-47
 Identities = 91/139 (65%), Positives = 97/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MF  GGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFLTAFFALSAVVYATLTAMFGNGGVEWAGTTALVLTTGLTLIVGTFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPI+I+LSFSTAAVGAALWLPWL+ AG+ F
Sbjct: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPIMIALSFSTAAVGAALWLPWLLVAGIVF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           V+ S  GLVFEY+WGPEKH
Sbjct: 121 VLVSAAGLVFEYHWGPEKH 139


>tr|A1UI95|A1UI95_MYCSK Tax_Id=189918 SubName: Full=Putative
           conserved integral membrane protein; Flags:
           Precursor;[Mycobacterium sp.]
          Length = 139

 Score =  190 bits (482), Expect = 6e-47
 Identities = 91/139 (65%), Positives = 97/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MF  GGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFLTAFFALSAVVYATLTAMFGNGGVEWAGTTALVLTTGLTLIVGTFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPI+I+LSFSTAAVGAALWLPWL+ AG+ F
Sbjct: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPIMIALSFSTAAVGAALWLPWLLVAGIVF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           V+ S  GLVFEY+WGPEKH
Sbjct: 121 VLVSAAGLVFEYHWGPEKH 139


>sp|P64947|COX4_MYCTU Tax_Id=1773 (ctaF)RecName: Full=Probable
           cytochrome c oxidase polypeptide 4; EC=1.9.3.1; AltName:
           Full=Cytochrome c oxidase polypeptide IV; AltName:
           Full=Cytochrome aa3 subunit 4;[Mycobacterium
           tuberculosis]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>sp|P64948|COX4_MYCBO Tax_Id=1765 (ctaF)RecName: Full=Probable
           cytochrome c oxidase polypeptide 4; EC=1.9.3.1; AltName:
           Full=Cytochrome c oxidase polypeptide IV; AltName:
           Full=Cytochrome aa3 subunit 4;[Mycobacterium bovis]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>tr|C6DPK9|C6DPK9_MYCTK Tax_Id=478434 SubName: Full=Conserved
           membrane protein;[Mycobacterium tuberculosis]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>tr|C1AQB4|C1AQB4_MYCBT Tax_Id=561275 SubName: Full=Putative
           transmembrane protein;[Mycobacterium bovis]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>tr|A5WPG9|A5WPG9_MYCTF Tax_Id=336982 SubName: Full=Conserved
           integral membrane protein;[Mycobacterium tuberculosis]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>tr|A5U4M7|A5U4M7_MYCTA Tax_Id=419947 SubName: Full=Putative
           conserved integral membrane protein;[Mycobacterium
           tuberculosis]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>tr|A4TBI7|A4TBI7_MYCGI Tax_Id=350054 SubName: Full=Putative
           conserved integral membrane protein; Flags:
           Precursor;[Mycobacterium gilvum]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 88/139 (63%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFLTAFFALCAVVYAVLTAMFATGGVEWAGTTALFLTTGLTLITGTFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLDTRPEDYEDAEI+DGAGELGFF+PHSWWPI+I+LS S  AVG A+WLPWLI AGV F
Sbjct: 61  RRLDTRPEDYEDAEIADGAGELGFFSPHSWWPIMIALSGSITAVGMAMWLPWLIVAGVCF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++T+V GLVFEYY GPEKH
Sbjct: 121 ILTTVSGLVFEYYTGPEKH 139


>tr|A1KKP1|A1KKP1_MYCBP Tax_Id=410289 SubName: Full=Probable
           conserved transmembrane protein;[Mycobacterium bovis]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>tr|D6G632|D6G632_MYCTU Tax_Id=478435 SubName: Full=Conserved
           membrane protein;[Mycobacterium tuberculosis KZN 605]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>tr|D6FWM0|D6FWM0_MYCTU Tax_Id=611304 SubName: Full=Conserved
           membrane protein;[Mycobacterium tuberculosis K85]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>tr|D6FI95|D6FI95_MYCTU Tax_Id=611303 SubName: Full=Conserved
           membrane protein;[Mycobacterium tuberculosis CPHL_A]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>tr|D6F5Y0|D6F5Y0_MYCTU Tax_Id=611302 SubName: Full=Conserved
           membrane protein;[Mycobacterium tuberculosis T46]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>tr|D5Z568|D5Z568_MYCTU Tax_Id=537209 SubName: Full=Conserved
           integral membrane protein;[Mycobacterium tuberculosis GM
           1503]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>tr|D5YS06|D5YS06_MYCTU Tax_Id=515616 SubName: Full=Integral
           membrane protein;[Mycobacterium tuberculosis 02_1987]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>tr|D5YH28|D5YH28_MYCTU Tax_Id=520140 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium tuberculosis
           EAS054]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>tr|D5Y5N3|D5Y5N3_MYCTU Tax_Id=520141 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium tuberculosis T85]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>tr|D5XUW3|D5XUW3_MYCTU Tax_Id=515617 SubName: Full=Conserved
           membrane protein;[Mycobacterium tuberculosis T92]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>tr|A4KIX0|A4KIX0_MYCTU Tax_Id=395095 SubName: Full=Conserved
           integral membrane protein;[Mycobacterium tuberculosis
           str. Haarlem]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>tr|A2VJU0|A2VJU0_MYCTU Tax_Id=348776 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium tuberculosis C]
          Length = 139

 Score =  181 bits (458), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF
Sbjct: 61  RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILASAAGLVFEYYVGPEKH 139


>tr|A1TB07|A1TB07_MYCVP Tax_Id=350058 SubName: Full=Putative
           conserved integral membrane protein;[Mycobacterium
           vanbaalenii]
          Length = 139

 Score =  180 bits (456), Expect = 6e-44
 Identities = 84/139 (60%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  +FA GG+EWA                 FFRFVA
Sbjct: 1   MHIEARLFEFLTAFFALSTVVYAVLTDLFARGGIEWAGTTALALTTGLTLITGTFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLDTRPEDYEDAEI+DGAGELGFF+PHSWWP++I+L+ S  AVG ALWLPWLI AGV F
Sbjct: 61  RRLDTRPEDYEDAEIADGAGELGFFSPHSWWPVMIALAGSVTAVGMALWLPWLIVAGVCF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++T+V GLVFEY+WGPEKH
Sbjct: 121 ILTTVAGLVFEYHWGPEKH 139


>sp|Q73YL6|COX4_MYCPA Tax_Id=1770 (ctaF)RecName: Full=Probable
           cytochrome c oxidase polypeptide 4; EC=1.9.3.1; AltName:
           Full=Cytochrome c oxidase polypeptide IV; AltName:
           Full=Cytochrome aa3 subunit 4;[Mycobacterium
           paratuberculosis]
          Length = 139

 Score =  178 bits (451), Expect = 2e-43
 Identities = 88/139 (63%), Positives = 95/139 (68%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  +FATGG EWA                 FFRFVA
Sbjct: 1   MHIEARLFEFIAGFFFLTALLYGVLTALFATGGEEWAGTTALALTGGLALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RR+DTRPEDYE AEISDGAGELGFF+PHSWWPILI+LS S AAVG ALWLPWLI AGV F
Sbjct: 61  RRIDTRPEDYEGAEISDGAGELGFFSPHSWWPILIALSGSVAAVGIALWLPWLIVAGVMF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           +++SV GLVFEYY GPEKH
Sbjct: 121 ILSSVAGLVFEYYLGPEKH 139


>tr|A0QF08|A0QF08_MYCA1 Tax_Id=243243 SubName: Full=Probable
           cytochrome c oxidase polypeptide 4;
           EC=1.9.3.1;[Mycobacterium avium]
          Length = 139

 Score =  178 bits (451), Expect = 2e-43
 Identities = 88/139 (63%), Positives = 95/139 (68%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  +FATGG EWA                 FFRFVA
Sbjct: 1   MHIEARLFEFIAGFFFLTALLYGVLTALFATGGEEWAGTTALALTGGLALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RR+DTRPEDYE AEISDGAGELGFF+PHSWWPILI+LS S AAVG ALWLPWLI AGV F
Sbjct: 61  RRIDTRPEDYEGAEISDGAGELGFFSPHSWWPILIALSGSVAAVGIALWLPWLIVAGVMF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           +++SV GLVFEYY GPEKH
Sbjct: 121 ILSSVAGLVFEYYLGPEKH 139


>tr|D5P714|D5P714_9MYCO Tax_Id=525368 (ctaF)SubName:
           Full=Cytochrome-c oxidase; EC=1.9.3.1;[Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 139

 Score =  178 bits (451), Expect = 2e-43
 Identities = 87/139 (62%), Positives = 95/139 (68%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  +FATGG EWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAGFFIVVAVLYGVLTALFATGGEEWAGTTALALTGGLAMIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RR+DTRPEDYE AEISDGAGELGFF+PHSWWPIL++LS S +AVG ALWLPWLIAAGV F
Sbjct: 61  RRIDTRPEDYEGAEISDGAGELGFFSPHSWWPILVALSASVSAVGIALWLPWLIAAGVTF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           V+ SV GL+FEYY GPEKH
Sbjct: 121 VLASVAGLIFEYYVGPEKH 139


>tr|B2HGW7|B2HGW7_MYCMM Tax_Id=216594 SubName: Full=Conserved
           integral membrane protein;[Mycobacterium marinum]
          Length = 139

 Score =  175 bits (444), Expect = 1e-42
 Identities = 86/139 (61%), Positives = 93/139 (66%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  +FATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVVTSIFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLDTRPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AA G ALWLPWLI AGV F
Sbjct: 61  RRLDTRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAATGIALWLPWLIVAGVVF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILGSAAGLVFEYYVGPEKH 139


>tr|A0PTN3|A0PTN3_MYCUA Tax_Id=362242 SubName: Full=Conserved
           integral membrane protein;[Mycobacterium ulcerans]
          Length = 139

 Score =  175 bits (444), Expect = 1e-42
 Identities = 86/139 (61%), Positives = 93/139 (66%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  +FATGGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEFVAAFFVVTAVLYGVVTSIFATGGVEWAGTTALALTGGMALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLDTRPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AA G ALWLPWLI AGV F
Sbjct: 61  RRLDTRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAATGIALWLPWLIVAGVVF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ S  GLVFEYY GPEKH
Sbjct: 121 ILGSAAGLVFEYYVGPEKH 139


>sp|Q9CCF0|COX4_MYCLE Tax_Id=1769 (ctaF)RecName: Full=Probable
           cytochrome c oxidase polypeptide 4; EC=1.9.3.1; AltName:
           Full=Cytochrome c oxidase polypeptide IV; AltName:
           Full=Cytochrome aa3 subunit 4;[Mycobacterium leprae]
          Length = 139

 Score =  175 bits (443), Expect = 2e-42
 Identities = 86/139 (61%), Positives = 92/139 (66%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGV+W                  FFRFVA
Sbjct: 1   MHIEARLFEFVAVFFVIMAVLYGVLTSMFATGGVDWVGTTALALTGGLALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD RPEDYE AEISDGAGELGFF+PHSWWP+L++LS S AAVG ALWLPWLI AGV F
Sbjct: 61  RRLDIRPEDYEGAEISDGAGELGFFSPHSWWPVLVALSGSVAAVGIALWLPWLIVAGVVF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           V+ S  GLVFEYY GPEKH
Sbjct: 121 VLASAAGLVFEYYVGPEKH 139


>tr|B8ZQL5|B8ZQL5_MYCLB Tax_Id=561304 SubName: Full=Putative
           membrane protein;[Mycobacterium leprae]
          Length = 139

 Score =  175 bits (443), Expect = 2e-42
 Identities = 86/139 (61%), Positives = 92/139 (66%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFE                  MFATGGV+W                  FFRFVA
Sbjct: 1   MHIEARLFEFVAVFFVIMAVLYGVLTSMFATGGVDWVGTTALALTGGLALIVATFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD RPEDYE AEISDGAGELGFF+PHSWWP+L++LS S AAVG ALWLPWLI AGV F
Sbjct: 61  RRLDIRPEDYEGAEISDGAGELGFFSPHSWWPVLVALSGSVAAVGIALWLPWLIVAGVVF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           V+ S  GLVFEYY GPEKH
Sbjct: 121 VLASAAGLVFEYYVGPEKH 139


>tr|B1MNZ3|B1MNZ3_MYCA9 Tax_Id=561007 SubName: Full=Probable
           cytochrome c oxidase polypeptide 4;[Mycobacterium
           abscessus]
          Length = 139

 Score =  172 bits (437), Expect = 9e-42
 Identities = 83/139 (59%), Positives = 96/139 (69%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           MHIEARLFEI                 M+A GGVEWA                 FFRFVA
Sbjct: 1   MHIEARLFEILTGFFALATVVYAVLTAMYANGGVEWAGTTAMVMTTGLSLIISTFFRFVA 60

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLDTRPEDYEDAEI+DGAGELGF++PHSWWPI+I+L+ +T AVG ALWLPWL+AAG  F
Sbjct: 61  RRLDTRPEDYEDAEIADGAGELGFYSPHSWWPIMIALAAATTAVGVALWLPWLLAAGAVF 120

Query: 121 VITSVCGLVFEYYWGPEKH 139
           V+++V GLVFEY+ G EKH
Sbjct: 121 VLSAVAGLVFEYHIGAEKH 139


>tr|D5ZG96|D5ZG96_MYCTU Tax_Id=537210 SubName: Full=Conserved
           membrane protein;[Mycobacterium tuberculosis T17]
          Length = 104

 Score =  154 bits (390), Expect = 3e-36
 Identities = 70/85 (82%), Positives = 77/85 (90%)

Query: 55  FFRFVARRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLI 114
           FFRFVARRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLI
Sbjct: 20  FFRFVARRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLI 79

Query: 115 AAGVAFVITSVCGLVFEYYWGPEKH 139
           AAGVAF++ S  GLVFEYY GPEKH
Sbjct: 80  AAGVAFILASAAGLVFEYYVGPEKH 104


>tr|C1A124|C1A124_RHOE4 Tax_Id=234621 (ctaF)SubName: Full=Putative
           cytochrome c oxidase subunit IV; EC=1.9.3.1;[Rhodococcus
           erythropolis]
          Length = 138

 Score =  135 bits (340), Expect = 2e-30
 Identities = 71/139 (51%), Positives = 85/139 (61%), Gaps = 1/139 (0%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           M IEA+LFEI                 +  TG +EWA                 +FRFVA
Sbjct: 1   MKIEAKLFEILTMFFILVAIIYGVFTALSRTG-IEWAGLTAIVLSAGLTLIVGTYFRFVA 59

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLDTRPEDY+DAEISDGAGELGFF+P S+WPIL++ + + AAV  A + PWLIA  V  
Sbjct: 60  RRLDTRPEDYDDAEISDGAGELGFFSPGSFWPILLAAAAALAAVSLAYFQPWLIAVAVVC 119

Query: 121 VITSVCGLVFEYYWGPEKH 139
           V+ +  GLVFEYY GPEKH
Sbjct: 120 VLAAAAGLVFEYYTGPEKH 138


>tr|C3JJ99|C3JJ99_RHOER Tax_Id=596309 SubName: Full=Cytochrome c
           oxidase polypeptide 4; EC=1.9.3.1;[Rhodococcus
           erythropolis SK121]
          Length = 138

 Score =  135 bits (340), Expect = 2e-30
 Identities = 71/139 (51%), Positives = 85/139 (61%), Gaps = 1/139 (0%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           M IEA+LFEI                 +  TG +EWA                 +FRFVA
Sbjct: 1   MKIEAKLFEILTMFFILVAIIYGVFTALSRTG-IEWAGLTAIVLSAGLTLIVGTYFRFVA 59

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLDTRPEDY+DAEISDGAGELGFF+P S+WPIL++ + + AAV  A + PWLIA  V  
Sbjct: 60  RRLDTRPEDYDDAEISDGAGELGFFSPGSFWPILLAAAAALAAVSLAYFQPWLIAVAVVC 119

Query: 121 VITSVCGLVFEYYWGPEKH 139
           V+ +  GLVFEYY GPEKH
Sbjct: 120 VLAAAAGLVFEYYTGPEKH 138


>sp|Q5YZ36|COX4_NOCFA Tax_Id=37329 (ctaF)RecName: Full=Probable
           cytochrome c oxidase polypeptide 4; EC=1.9.3.1; AltName:
           Full=Cytochrome c oxidase polypeptide IV; AltName:
           Full=Cytochrome aa3 subunit 4;[Nocardia farcinica]
          Length = 138

 Score =  132 bits (332), Expect = 1e-29
 Identities = 71/139 (51%), Positives = 84/139 (60%), Gaps = 1/139 (0%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           M IEAR+FE+                    TG VEWA                 +FRFVA
Sbjct: 1   MRIEARIFELLTVFFIIVGVVYGFFTAQSRTG-VEWAGTTAIVLTAGLSLIIGTYFRFVA 59

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLD RPEDYEDAEI DGAG+LGFF+P S+WPIL++ + S AA+G A + PWLIA GV  
Sbjct: 60  RRLDLRPEDYEDAEIVDGAGDLGFFSPGSFWPILLAGAGSVAALGLAFFEPWLIAVGVIC 119

Query: 121 VITSVCGLVFEYYWGPEKH 139
           VI +  GLVFEY+ GPEKH
Sbjct: 120 VIAAAAGLVFEYHLGPEKH 138


>tr|Q0SHM3|Q0SHM3_RHOSR Tax_Id=101510 SubName: Full=Putative
           uncharacterized protein;[Rhodococcus sp.]
          Length = 138

 Score =  131 bits (329), Expect = 3e-29
 Identities = 68/139 (48%), Positives = 83/139 (59%), Gaps = 1/139 (0%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           M IEA+LFEI                 +  TG +EWA                 +FRFVA
Sbjct: 1   MKIEAKLFEILTVFFILVAIVYGVFTAVSRTG-IEWAGLTGICLSAGLTLIIGTYFRFVA 59

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLDTRPEDYEDAEI+DGAG+LGFF+P S+WPIL++ S +  AV  A + PW+I   V  
Sbjct: 60  RRLDTRPEDYEDAEIADGAGDLGFFSPGSYWPILLAASAAFVAVAMAFFQPWMIVVAVVA 119

Query: 121 VITSVCGLVFEYYWGPEKH 139
           V+ +  GLVFEYY GPEKH
Sbjct: 120 VLAAAAGLVFEYYVGPEKH 138


>tr|D5UY54|D5UY54_TSUPA Tax_Id=521096 SubName: Full=Cytochrome-c
           oxidase; EC=1.9.3.1;[Tsukamurella paurometabola DSM
           20162]
          Length = 143

 Score =  131 bits (329), Expect = 3e-29
 Identities = 68/143 (47%), Positives = 82/143 (57%), Gaps = 4/143 (2%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATG----GVEWAXXXXXXXXXXXXXXXXXFF 56
           M +EA+LFE                  ++ TG    GVEW                  +F
Sbjct: 1   MKVEAKLFEWLTVFFFAVGILYTVVTYIWGTGHDGGGVEWVGTTGMFLTGGLTLITGTYF 60

Query: 57  RFVARRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAA 116
           RFVA R+DTRPEDYEDAE+SDGAGELGFF+PHSWWPIL+S S +   +  AL L WL A 
Sbjct: 61  RFVANRVDTRPEDYEDAEVSDGAGELGFFSPHSWWPILLSASVAIVGISVALQLYWLWAF 120

Query: 117 GVAFVITSVCGLVFEYYWGPEKH 139
           G   V+ +  GLVFEY+ GPEKH
Sbjct: 121 GGFLVVAAAWGLVFEYHKGPEKH 143


>tr|D5PP90|D5PP90_COREQ Tax_Id=525370 (ctaF)SubName:
           Full=Cytochrome-c oxidase; EC=1.9.3.1;[Rhodococcus equi
           ATCC 33707]
          Length = 138

 Score =  130 bits (328), Expect = 4e-29
 Identities = 67/139 (48%), Positives = 85/139 (61%), Gaps = 1/139 (0%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           M IEA+LFEI                 M  TG +EWA                 +FRFVA
Sbjct: 1   MKIEAKLFEILTVFFILVAIVYGVFTAMSRTG-IEWAGLTAIILSAGLSLIVGTYFRFVA 59

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLDTRPEDYE+AEISDG+G+LGFF+P S+WPIL++ + + AA+  A + PW+I   V  
Sbjct: 60  RRLDTRPEDYEEAEISDGSGDLGFFSPGSFWPILLAGAAAFAAISLAFFQPWMIVVAVVL 119

Query: 121 VITSVCGLVFEYYWGPEKH 139
           V+T+  GLVFEY+ GPEKH
Sbjct: 120 VLTAAAGLVFEYHLGPEKH 138


>tr|C1AUA3|C1AUA3_RHOOB Tax_Id=632772 (ctaF)SubName: Full=Putative
           cytochrome c oxidase subunit IV; EC=1.9.3.1;[Rhodococcus
           opacus]
          Length = 138

 Score =  130 bits (326), Expect = 7e-29
 Identities = 67/139 (48%), Positives = 83/139 (59%), Gaps = 1/139 (0%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           M IEA+LFEI                 +  TG +EWA                 +FRFVA
Sbjct: 1   MKIEAKLFEILTVFFILVAIVYGVFTAVSRTG-IEWAGLTGICLSAGLTLIIGTYFRFVA 59

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RRLDTRPEDYEDAEI+DGAG+LGFF+P S+WPIL++ + +  AV  A + PW+I   V  
Sbjct: 60  RRLDTRPEDYEDAEIADGAGDLGFFSPGSYWPILLAAAAAFVAVSMAFFQPWMIVVAVVA 119

Query: 121 VITSVCGLVFEYYWGPEKH 139
           V+ +  GLVFEYY GPEKH
Sbjct: 120 VLAAAAGLVFEYYVGPEKH 138


>tr|D0LAX4|D0LAX4_GORB4 Tax_Id=526226 SubName: Full=Cytochrome-c
           oxidase; EC=1.9.3.1;[Gordonia bronchialis]
          Length = 138

 Score =  115 bits (288), Expect = 2e-24
 Identities = 60/139 (43%), Positives = 76/139 (54%), Gaps = 1/139 (0%)

Query: 1   MHIEARLFEIXXXXXXXXXXXXXXXXXMFATGGVEWAXXXXXXXXXXXXXXXXXFFRFVA 60
           M +EARLFE+                  F + G EW                  +FRFVA
Sbjct: 1   MKVEARLFELLTVFFALAGVAYTLFTT-FTSKGTEWVGVVGMFFSAGLTLIAGTYFRFVA 59

Query: 61  RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120
           RR++ RPED+EDAEI DGAGELGFF+PHSWWPIL++   +  AV  A    WL     A 
Sbjct: 60  RRVEIRPEDFEDAEIEDGAGELGFFSPHSWWPILVAGGAALFAVAFATGNFWLAIFAAAV 119

Query: 121 VITSVCGLVFEYYWGPEKH 139
           ++ +  G+VFEY+ GPEKH
Sbjct: 120 IMGTAAGMVFEYHVGPEKH 138


>tr|A4X9Z3|A4X9Z3_SALTO Tax_Id=369723 SubName: Full=Cytochrome-c
           oxidase; EC=1.9.3.1;[Salinispora tropica]
          Length = 141

 Score =  108 bits (271), Expect = 2e-22
 Identities = 51/107 (47%), Positives = 66/107 (61%)

Query: 32  GGVEWAXXXXXXXXXXXXXXXXXFFRFVARRLDTRPEDYEDAEISDGAGELGFFAPHSWW 91
           G +EW                  FF FVARR+D RPED  DAEISDGAGE+GFF+P S+W
Sbjct: 31  GQIEWVGTIALLLSFLLCLMCGGFFWFVARRIDLRPEDRPDAEISDGAGEVGFFSPGSYW 90

Query: 92  PILISLSFSTAAVGAALWLPWLIAAGVAFVITSVCGLVFEYYWGPEK 138
           P  I+L+ + A +G   W  WL+A G+  V+ +VCGL+FEYY G  +
Sbjct: 91  PFGIALASTVAGLGLVFWQLWLLALGLVAVVMAVCGLLFEYYSGTRR 137


>tr|C6W9F7|C6W9F7_ACTMD Tax_Id=446462 SubName: Full=Cytochrome-c
           oxidase; EC=1.9.3.1;[Actinosynnema mirum]
          Length = 138

 Score =  106 bits (264), Expect = 1e-21
 Identities = 45/82 (54%), Positives = 61/82 (74%)

Query: 55  FFRFVARRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLI 114
           +FRF+ARR++ RPED  DAEISDGAGELGFF+P S+WP+ ++ + +   V  A WL WL+
Sbjct: 54  YFRFIARRIEVRPEDNPDAEISDGAGELGFFSPGSYWPVALAAAAAVTGVALAFWLIWLL 113

Query: 115 AAGVAFVITSVCGLVFEYYWGP 136
             GV  ++ +V GLVFEY+ GP
Sbjct: 114 VIGVVLIVLTVGGLVFEYHTGP 135


>tr|A8LYC5|A8LYC5_SALAI Tax_Id=391037 SubName: Full=Cytochrome-c
           oxidase; EC=1.9.3.1;[Salinispora arenicola]
          Length = 141

 Score =  105 bits (262), Expect = 2e-21
 Identities = 50/107 (46%), Positives = 64/107 (59%)

Query: 32  GGVEWAXXXXXXXXXXXXXXXXXFFRFVARRLDTRPEDYEDAEISDGAGELGFFAPHSWW 91
           G VEW                  FF FVARR+D RPED  DAEI+DGAGE+GFF+P S+W
Sbjct: 31  GQVEWVGTVALLLSFLLCLMCGGFFWFVARRIDLRPEDRPDAEIADGAGEVGFFSPGSYW 90

Query: 92  PILISLSFSTAAVGAALWLPWLIAAGVAFVITSVCGLVFEYYWGPEK 138
           P  I+L+ + A +G   W  WL+  G+  VI + CGL+FEYY G  +
Sbjct: 91  PFGIALASTIAGLGLVFWQLWLLGVGLVAVILTTCGLLFEYYSGTRR 137


>tr|C4RLQ5|C4RLQ5_9ACTO Tax_Id=219305 SubName: Full=Cytochrome c
           oxidase;[Micromonospora sp. ATCC 39149]
          Length = 142

 Score =  103 bits (257), Expect = 7e-21
 Identities = 47/107 (43%), Positives = 64/107 (59%)

Query: 32  GGVEWAXXXXXXXXXXXXXXXXXFFRFVARRLDTRPEDYEDAEISDGAGELGFFAPHSWW 91
           G VEW                  FF FV+RR+D RPED  D EI+DGAGE+GFF+P S+W
Sbjct: 32  GQVEWVGTVGLLLSFLLCTMCGGFFWFVSRRIDPRPEDRPDGEIADGAGEIGFFSPGSYW 91

Query: 92  PILISLSFSTAAVGAALWLPWLIAAGVAFVITSVCGLVFEYYWGPEK 138
           P  ++L+ +TA +G   W  WL+  G+  V+ + CGL+FEYY G  +
Sbjct: 92  PFGLALAAATAGLGLVFWQFWLLGLGLVAVVFAACGLLFEYYTGTRR 138


  Database: Amellifera_nr
    Posted date:  Jul 23, 2010  5:10 AM
  Number of letters in database: 4,236,830,644
  Number of sequences in database:  12,507,864
  
Lambda     K      H
   0.327    0.141    0.487 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 12507864
Number of Hits to DB: 893,235,874
Number of extensions: 28970529
Number of successful extensions: 107481
Number of sequences better than 10.0: 180
Number of HSP's gapped: 108105
Number of HSP's successfully gapped: 180
Length of query: 139
Length of database: 4,236,830,644
Length adjustment: 103
Effective length of query: 36
Effective length of database: 2,948,520,652
Effective search space: 106146743472
Effective search space used: 106146743472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 75 (33.5 bits)