BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_4693 (79 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|A0R1B6|A0R1B6_MYCS2 Tax_Id=246196 SubName: Full=Putative unch... 100 6e-20 tr|A1TCD9|A1TCD9_MYCVP Tax_Id=350058 SubName: Full=Putative unch... 60 1e-07 tr|A4T2P9|A4T2P9_MYCGI Tax_Id=350054 SubName: Full=Putative unch... 58 3e-07 tr|Q8VJI1|Q8VJI1_MYCTU Tax_Id=1773 SubName: Full=Putative unchar... 57 7e-07 tr|D5ZH55|D5ZH55_MYCTU Tax_Id=537210 SubName: Full=Putative unch... 55 2e-06 tr|D5YHU8|D5YHU8_MYCTU Tax_Id=520140 SubName: Full=Putative unch... 55 2e-06 tr|A2VKJ1|A2VKJ1_MYCTU Tax_Id=348776 SubName: Full=Putative unch... 55 2e-06 tr|B2HNH6|B2HNH6_MYCMM Tax_Id=216594 SubName: Full=Putative unch... 54 6e-06 tr|Q1B5W9|Q1B5W9_MYCSS Tax_Id=164756 SubName: Full=Putative unch... 53 1e-05 tr|A3Q2L3|A3Q2L3_MYCSJ Tax_Id=164757 SubName: Full=Putative unch... 53 1e-05 tr|A1UJ67|A1UJ67_MYCSK Tax_Id=189918 SubName: Full=Putative unch... 53 1e-05 tr|A0PU43|A0PU43_MYCUA Tax_Id=362242 SubName: Full=Putative unch... 52 2e-05 tr|Q73XM0|Q73XM0_MYCPA Tax_Id=1770 SubName: Full=Putative unchar... 52 2e-05 tr|A0QDE4|A0QDE4_MYCA1 Tax_Id=243243 SubName: Full=Putative unch... 50 7e-05 tr|D5PH48|D5PH48_9MYCO Tax_Id=525368 SubName: Full=Putative unch... 50 9e-05 tr|B1MMU1|B1MMU1_MYCA9 Tax_Id=561007 SubName: Full=Putative unch... 48 3e-04 tr|D5PPS7|D5PPS7_COREQ Tax_Id=525370 SubName: Full=Putative unch... 35 2.3 tr|Q0SGX8|Q0SGX8_RHOSR Tax_Id=101510 SubName: Full=Putative unch... 35 3.0 tr|C1AVR8|C1AVR8_RHOOB Tax_Id=632772 SubName: Full=Putative unch... 35 3.0 >tr|A0R1B6|A0R1B6_MYCS2 Tax_Id=246196 SubName: Full=Putative uncharacterized protein;[Mycobacterium smegmatis] Length = 79 Score = 100 bits (249), Expect = 6e-20 Identities = 49/79 (62%), Positives = 49/79 (62%) Query: 1 MSTALTHGLIGGVPXXXXXXXXXXXXTRKGPHPDTYKMSDPWTHAPILWAAEEPREXXXX 60 MSTALTHGLIGGVP TRKGPHPDTYKMSDPWTHAPILWAAEEPRE Sbjct: 1 MSTALTHGLIGGVPLVLFAVLALIFLTRKGPHPDTYKMSDPWTHAPILWAAEEPREHGHG 60 Query: 61 XXXXXXXXXXXXXXASGKW 79 ASGKW Sbjct: 61 GHGHDSHGVVIGGGASGKW 79 >tr|A1TCD9|A1TCD9_MYCVP Tax_Id=350058 SubName: Full=Putative uncharacterized protein;[Mycobacterium vanbaalenii] Length = 77 Score = 59.7 bits (143), Expect = 1e-07 Identities = 31/78 (39%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 2 STALTHGLIGGVPXXXXXXXXXXXXTRKGPHPDTYKMSDPWTHAPILWAAEEPREXXXXX 61 STAL H +P T+KGPHP T+ MS+ WTH PILWAA+EP + Sbjct: 3 STALVHASFVVIPLALAGLLSLFIFTKKGPHPATFDMSEKWTHEPILWAADEPAD---HG 59 Query: 62 XXXXXXXXXXXXXASGKW 79 ASGKW Sbjct: 60 HGGHGSHLTIGGGASGKW 77 >tr|A4T2P9|A4T2P9_MYCGI Tax_Id=350054 SubName: Full=Putative uncharacterized protein;[Mycobacterium gilvum] Length = 91 Score = 58.2 bits (139), Expect = 3e-07 Identities = 31/78 (39%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 2 STALTHGLIGGVPXXXXXXXXXXXXTRKGPHPDTYKMSDPWTHAPILWAAEEPREXXXXX 61 +TAL H VP T+KGPHP T+ MS+ WTH PILWAA+EP + Sbjct: 17 TTALVHASFLLVPLALAGLLSLFIFTKKGPHPATFDMSEKWTHEPILWAADEPAD---HG 73 Query: 62 XXXXXXXXXXXXXASGKW 79 ASGKW Sbjct: 74 HGGHGSHLTIGGGASGKW 91 >tr|Q8VJI1|Q8VJI1_MYCTU Tax_Id=1773 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis] Length = 80 Score = 57.0 bits (136), Expect = 7e-07 Identities = 25/53 (47%), Positives = 30/53 (56%) Query: 1 MSTALTHGLIGGVPXXXXXXXXXXXXTRKGPHPDTYKMSDPWTHAPILWAAEE 53 MS H G+P +RKGPHP TYK+S+PWTH PILWAA + Sbjct: 1 MSAMEIHLFFVGIPLLLVVVLSVLIWSRKGPHPATYKLSEPWTHPPILWAATD 53 >tr|D5ZH55|D5ZH55_MYCTU Tax_Id=537210 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis T17] Length = 77 Score = 55.5 bits (132), Expect = 2e-06 Identities = 23/47 (48%), Positives = 28/47 (59%) Query: 7 HGLIGGVPXXXXXXXXXXXXTRKGPHPDTYKMSDPWTHAPILWAAEE 53 H G+P +RKGPHP TYK+S+PWTH PILWAA + Sbjct: 4 HLFFVGIPLLLVVVLSVLIWSRKGPHPATYKLSEPWTHPPILWAATD 50 >tr|D5YHU8|D5YHU8_MYCTU Tax_Id=520140 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis EAS054] Length = 77 Score = 55.5 bits (132), Expect = 2e-06 Identities = 23/47 (48%), Positives = 28/47 (59%) Query: 7 HGLIGGVPXXXXXXXXXXXXTRKGPHPDTYKMSDPWTHAPILWAAEE 53 H G+P +RKGPHP TYK+S+PWTH PILWAA + Sbjct: 4 HLFFVGIPLLLVVVLSVLIWSRKGPHPATYKLSEPWTHPPILWAATD 50 >tr|A2VKJ1|A2VKJ1_MYCTU Tax_Id=348776 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis C] Length = 77 Score = 55.5 bits (132), Expect = 2e-06 Identities = 23/47 (48%), Positives = 28/47 (59%) Query: 7 HGLIGGVPXXXXXXXXXXXXTRKGPHPDTYKMSDPWTHAPILWAAEE 53 H G+P +RKGPHP TYK+S+PWTH PILWAA + Sbjct: 4 HLFFVGIPLLLVVVLSVLIWSRKGPHPATYKLSEPWTHPPILWAATD 50 >tr|B2HNH6|B2HNH6_MYCMM Tax_Id=216594 SubName: Full=Putative uncharacterized protein;[Mycobacterium marinum] Length = 80 Score = 53.9 bits (128), Expect = 6e-06 Identities = 24/53 (45%), Positives = 29/53 (54%) Query: 1 MSTALTHGLIGGVPXXXXXXXXXXXXTRKGPHPDTYKMSDPWTHAPILWAAEE 53 MS H G+P TRKGPHP TY++S+ WTH PILWAA + Sbjct: 1 MSVMEIHLFFVGIPLFLVVVLGAIFLTRKGPHPATYELSEKWTHPPILWAATD 53 >tr|Q1B5W9|Q1B5W9_MYCSS Tax_Id=164756 SubName: Full=Putative uncharacterized protein;[Mycobacterium sp.] Length = 89 Score = 53.1 bits (126), Expect = 1e-05 Identities = 19/26 (73%), Positives = 24/26 (92%) Query: 29 KGPHPDTYKMSDPWTHAPILWAAEEP 54 KGPHP +YK+S+PW H+PILWAA+EP Sbjct: 24 KGPHPASYKLSEPWRHSPILWAADEP 49 >tr|A3Q2L3|A3Q2L3_MYCSJ Tax_Id=164757 SubName: Full=Putative uncharacterized protein;[Mycobacterium sp.] Length = 89 Score = 53.1 bits (126), Expect = 1e-05 Identities = 19/26 (73%), Positives = 24/26 (92%) Query: 29 KGPHPDTYKMSDPWTHAPILWAAEEP 54 KGPHP +YK+S+PW H+PILWAA+EP Sbjct: 24 KGPHPASYKLSEPWRHSPILWAADEP 49 >tr|A1UJ67|A1UJ67_MYCSK Tax_Id=189918 SubName: Full=Putative uncharacterized protein;[Mycobacterium sp.] Length = 89 Score = 53.1 bits (126), Expect = 1e-05 Identities = 19/26 (73%), Positives = 24/26 (92%) Query: 29 KGPHPDTYKMSDPWTHAPILWAAEEP 54 KGPHP +YK+S+PW H+PILWAA+EP Sbjct: 24 KGPHPASYKLSEPWRHSPILWAADEP 49 >tr|A0PU43|A0PU43_MYCUA Tax_Id=362242 SubName: Full=Putative uncharacterized protein;[Mycobacterium ulcerans] Length = 77 Score = 52.4 bits (124), Expect = 2e-05 Identities = 22/47 (46%), Positives = 27/47 (57%) Query: 7 HGLIGGVPXXXXXXXXXXXXTRKGPHPDTYKMSDPWTHAPILWAAEE 53 H G+P TRKGPHP TY++S+ WTH PILWAA + Sbjct: 4 HLFFVGIPLFLVVVLGAIFLTRKGPHPATYELSEKWTHPPILWAATD 50 >tr|Q73XM0|Q73XM0_MYCPA Tax_Id=1770 SubName: Full=Putative uncharacterized protein;[Mycobacterium paratuberculosis] Length = 79 Score = 52.0 bits (123), Expect = 2e-05 Identities = 27/79 (34%), Positives = 32/79 (40%) Query: 1 MSTALTHGLIGGVPXXXXXXXXXXXXTRKGPHPDTYKMSDPWTHAPILWAAEEPREXXXX 60 MS H I G+P + KGPHP TYK+ + WTH PILWAA + Sbjct: 1 MSPMQMHLFIVGIPLLLVIVLSVLIWSHKGPHPATYKLGEKWTHPPILWAAVDEDVGHAG 60 Query: 61 XXXXXXXXXXXXXXASGKW 79 ASG W Sbjct: 61 HGGHGTSEFTVGGGASGTW 79 >tr|A0QDE4|A0QDE4_MYCA1 Tax_Id=243243 SubName: Full=Putative uncharacterized protein;[Mycobacterium avium] Length = 76 Score = 50.4 bits (119), Expect = 7e-05 Identities = 25/73 (34%), Positives = 30/73 (41%) Query: 7 HGLIGGVPXXXXXXXXXXXXTRKGPHPDTYKMSDPWTHAPILWAAEEPREXXXXXXXXXX 66 H I G+P + KGPHP TYK+ + WTH PILWAA + Sbjct: 4 HLFIVGIPLLLVIVLSVLIWSHKGPHPATYKLGEKWTHPPILWAAVDEDVGHAGHGGHGT 63 Query: 67 XXXXXXXXASGKW 79 ASG W Sbjct: 64 SEFTVGGGASGTW 76 >tr|D5PH48|D5PH48_9MYCO Tax_Id=525368 SubName: Full=Putative uncharacterized protein;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 93 Score = 50.1 bits (118), Expect = 9e-05 Identities = 21/47 (44%), Positives = 26/47 (55%) Query: 7 HGLIGGVPXXXXXXXXXXXXTRKGPHPDTYKMSDPWTHAPILWAAEE 53 H + G+P + KGPHP TYK+ D WTH PILWAA + Sbjct: 22 HLYLIGIPLLLVVVLAVLIWSHKGPHPATYKLPDKWTHPPILWAATD 68 >tr|B1MMU1|B1MMU1_MYCA9 Tax_Id=561007 SubName: Full=Putative uncharacterized protein;[Mycobacterium abscessus] Length = 86 Score = 48.1 bits (113), Expect = 3e-04 Identities = 18/24 (75%), Positives = 20/24 (83%) Query: 28 RKGPHPDTYKMSDPWTHAPILWAA 51 +KGPHP TY M+D WTH PILWAA Sbjct: 34 KKGPHPATYNMNDGWTHGPILWAA 57 >tr|D5PPS7|D5PPS7_COREQ Tax_Id=525370 SubName: Full=Putative uncharacterized protein;[Rhodococcus equi ATCC 33707] Length = 82 Score = 35.4 bits (80), Expect = 2.3 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Query: 27 TRKGPH--PDTYKMSDPWTHAPILWAAEEPREXXXXXXXXXXXXXXXXXXASGKW 79 T+K P P Y++ + WTH P+LW+A + ASGKW Sbjct: 28 TKKSPGFVPTEYRLGERWTHQPVLWSAVDEVTTHGHHAAHAVGADAIGGSASGKW 82 >tr|Q0SGX8|Q0SGX8_RHOSR Tax_Id=101510 SubName: Full=Putative uncharacterized protein;[Rhodococcus sp.] Length = 86 Score = 35.0 bits (79), Expect = 3.0 Identities = 11/22 (50%), Positives = 16/22 (72%) Query: 30 GPHPDTYKMSDPWTHAPILWAA 51 GP P + + + WTHAP+LW+A Sbjct: 33 GPVPPAFHLGEEWTHAPVLWSA 54 >tr|C1AVR8|C1AVR8_RHOOB Tax_Id=632772 SubName: Full=Putative uncharacterized protein;[Rhodococcus opacus] Length = 86 Score = 35.0 bits (79), Expect = 3.0 Identities = 11/22 (50%), Positives = 16/22 (72%) Query: 30 GPHPDTYKMSDPWTHAPILWAA 51 GP P + + + WTHAP+LW+A Sbjct: 33 GPVPPAFHLGEEWTHAPVLWSA 54 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.314 0.132 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 465,167,317 Number of extensions: 10913420 Number of successful extensions: 6727 Number of sequences better than 10.0: 19 Number of HSP's gapped: 6731 Number of HSP's successfully gapped: 19 Length of query: 79 Length of database: 4,236,830,644 Length adjustment: 50 Effective length of query: 29 Effective length of database: 3,611,437,444 Effective search space: 104731685876 Effective search space used: 104731685876 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 75 (33.5 bits)