BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_4954 (664 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|A0R218|A0R218_MYCS2 Tax_Id=246196 (rho)SubName: Full=Transcri... 765 0.0 tr|Q1B536|Q1B536_MYCSS Tax_Id=164756 SubName: Full=Transcription... 727 0.0 tr|A3Q3C8|A3Q3C8_MYCSJ Tax_Id=164757 SubName: Full=Transcription... 727 0.0 tr|A1UK01|A1UK01_MYCSK Tax_Id=189918 SubName: Full=Transcription... 727 0.0 tr|A0PUL3|A0PUL3_MYCUA Tax_Id=362242 (rho)SubName: Full=Transcri... 719 0.0 sp|P66028|RHO_MYCTU Tax_Id=1773 (rho)RecName: Full=Transcription... 718 0.0 sp|P66029|RHO_MYCBO Tax_Id=1765 (rho)RecName: Full=Transcription... 718 0.0 tr|Q73X46|Q73X46_MYCPA Tax_Id=1770 (rho)SubName: Full=Rho;[Mycob... 718 0.0 tr|C6DU73|C6DU73_MYCTK Tax_Id=478434 SubName: Full=Transcription... 718 0.0 tr|C1AMU1|C1AMU1_MYCBT Tax_Id=561275 (rho)SubName: Full=Transcri... 718 0.0 tr|B2HQL5|B2HQL5_MYCMM Tax_Id=216594 (rho)SubName: Full=Transcri... 718 0.0 tr|A5WLX8|A5WLX8_MYCTF Tax_Id=336982 SubName: Full=Transcription... 718 0.0 tr|A5U1Z6|A5U1Z6_MYCTA Tax_Id=419947 (rho)SubName: Full=Transcri... 718 0.0 tr|A1KI85|A1KI85_MYCBP Tax_Id=410289 (rho)SubName: Full=Probable... 718 0.0 tr|A0QCW4|A0QCW4_MYCA1 Tax_Id=243243 (rho)SubName: Full=Transcri... 718 0.0 tr|D6FZF5|D6FZF5_MYCTU Tax_Id=478435 SubName: Full=Transcription... 718 0.0 tr|D6FRE1|D6FRE1_MYCTU Tax_Id=611304 SubName: Full=Transcription... 718 0.0 tr|D6FGE3|D6FGE3_MYCTU Tax_Id=611303 SubName: Full=Transcription... 718 0.0 tr|D5Z2K9|D5Z2K9_MYCTU Tax_Id=537209 SubName: Full=Transcription... 718 0.0 tr|D5YQS7|D5YQS7_MYCTU Tax_Id=515616 SubName: Full=Transcription... 718 0.0 tr|D5YEE5|D5YEE5_MYCTU Tax_Id=520140 SubName: Full=Transcription... 718 0.0 tr|D5Y2T9|D5Y2T9_MYCTU Tax_Id=520141 SubName: Full=Transcription... 718 0.0 tr|A4KGL8|A4KGL8_MYCTU Tax_Id=395095 SubName: Full=Transcription... 718 0.0 tr|A2VHJ3|A2VHJ3_MYCTU Tax_Id=348776 SubName: Full=Transcription... 718 0.0 tr|B8ZR29|B8ZR29_MYCLB Tax_Id=561304 (rho)SubName: Full=Transcri... 715 0.0 tr|D6F3Q4|D6F3Q4_MYCTU Tax_Id=611302 SubName: Full=Transcription... 715 0.0 tr|D5ZF60|D5ZF60_MYCTU Tax_Id=537210 SubName: Full=Transcription... 715 0.0 tr|D5PGH8|D5PGH8_9MYCO Tax_Id=525368 (rho)SubName: Full=Transcri... 715 0.0 sp|P45835|RHO_MYCLE Tax_Id=1769 (rho)RecName: Full=Transcription... 714 0.0 tr|A1TD72|A1TD72_MYCVP Tax_Id=350058 SubName: Full=Transcription... 711 0.0 tr|A4T8L9|A4T8L9_MYCGI Tax_Id=350054 SubName: Full=Transcription... 708 0.0 tr|B1MLU7|B1MLU7_MYCA9 Tax_Id=561007 SubName: Full=Probable tran... 707 0.0 tr|Q5Z0Z4|Q5Z0Z4_NOCFA Tax_Id=37329 (rho)SubName: Full=Putative ... 688 0.0 tr|D5XSS7|D5XSS7_MYCTU Tax_Id=515617 SubName: Full=Transcription... 686 0.0 tr|C1AW12|C1AW12_RHOOB Tax_Id=632772 (rho)SubName: Full=Transcri... 682 0.0 tr|D0L9H1|D0L9H1_GORB4 Tax_Id=526226 SubName: Full=Transcription... 681 0.0 tr|Q0SGN6|Q0SGN6_RHOSR Tax_Id=101510 SubName: Full=Transcription... 681 0.0 tr|C1A1Z2|C1A1Z2_RHOE4 Tax_Id=234621 (rho)SubName: Full=Transcri... 669 0.0 tr|D5PVH9|D5PVH9_COREQ Tax_Id=525370 (rho)SubName: Full=Transcri... 669 0.0 tr|C3JI49|C3JI49_RHOER Tax_Id=596309 (rho)SubName: Full=Transcri... 669 0.0 tr|C7MX54|C7MX54_SACVD Tax_Id=471857 SubName: Full=Transcription... 639 0.0 tr|D5UW57|D5UW57_TSUPA Tax_Id=521096 SubName: Full=Transcription... 634 e-179 tr|C6WHL1|C6WHL1_ACTMD Tax_Id=446462 SubName: Full=Transcription... 620 e-175 tr|D3M497|D3M497_9ACTO Tax_Id=656024 SubName: Full=Transcription... 610 e-172 tr|C4LJM6|C4LJM6_CORK4 Tax_Id=645127 SubName: Full=Transcription... 609 e-172 >tr|A0R218|A0R218_MYCS2 Tax_Id=246196 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium smegmatis] Length = 664 Score = 765 bits (1976), Expect = 0.0 Identities = 392/392 (100%), Positives = 392/392 (100%) Query: 273 NDTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGA 332 NDTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGA Sbjct: 273 NDTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGA 332 Query: 333 VRVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPE 392 VRVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPE Sbjct: 333 VRVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPE 392 Query: 393 RLSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEE 452 RLSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEE Sbjct: 393 RLSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEE 452 Query: 453 VTDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN 512 VTDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN Sbjct: 453 VTDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN 512 Query: 513 NASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEF 572 NASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEF Sbjct: 513 NASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEF 572 Query: 573 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQA 632 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQA Sbjct: 573 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQA 632 Query: 633 IDLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 IDLLISQLRKTKTNYEFLVQVSKTAPGSMDVD Sbjct: 633 IDLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 Score = 194 bits (494), Expect = 3e-47 Identities = 115/178 (64%), Positives = 115/178 (64%) Query: 1 MTETDLFTADNASDTGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGLRK 60 MTETDLFTADNASDTGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGLRK Sbjct: 1 MTETDLFTADNASDTGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGLRK 60 Query: 61 SELIAAIRAHRGESNGRTAEASSPATADAQTGEQXXXXXXXXXXXXXXSTRQXXXXXXXX 120 SELIAAIRAHRGESNGRTAEASSPATADAQTGEQ STRQ Sbjct: 61 SELIAAIRAHRGESNGRTAEASSPATADAQTGEQAAEAPAPRRRERRASTRQAGAPVAEK 120 Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKPAKEAQTKAAEAPEA 178 DKPAKEAQTKAAEAPEA Sbjct: 121 GEAGEKAGEKTEAQPEAKTEAQPEAKAEAPAEAKTERAEKADKPAKEAQTKAAEAPEA 178 >tr|Q1B536|Q1B536_MYCSS Tax_Id=164756 SubName: Full=Transcription termination factor Rho;[Mycobacterium sp.] Length = 663 Score = 727 bits (1877), Expect = 0.0 Identities = 367/391 (93%), Positives = 381/391 (97%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 DTE+REDDVVQPVAGILDVLDNYAFVRTSGYL GPNDVYVSMNMVRKNGLRRGDAVTGAV Sbjct: 273 DTEIREDDVVQPVAGILDVLDNYAFVRTSGYLPGPNDVYVSMNMVRKNGLRRGDAVTGAV 332 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 +VP+EG+ GGQNQRQKFNPLVRLD+VNGG VEDA+KRPEFGKLTPLYPN+RLRLETSP++ Sbjct: 333 KVPKEGEGGGQNQRQKFNPLVRLDSVNGGPVEDARKRPEFGKLTPLYPNQRLRLETSPDK 392 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 393 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERPEEV 452 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 453 TDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 512 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTI+ATAMVETGSTGDTVIFEEFK Sbjct: 513 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIVATAMVETGSTGDTVIFEEFK 572 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLL PDEFAIVHKLRRVLSGLDSHQAI Sbjct: 573 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLGPDEFAIVHKLRRVLSGLDSHQAI 632 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTKTNYEFLVQVSK PGS+D D Sbjct: 633 DLLMSQLRKTKTNYEFLVQVSKNTPGSVDND 663 Score = 85.1 bits (209), Expect = 3e-14 Identities = 55/108 (50%), Positives = 68/108 (62%), Gaps = 22/108 (20%) Query: 1 MTETDLFTADNA------------SDTGDLSGAVKSNTAPRA---------RSASLSTMV 39 MT+TDLFTAD+A + T AV + TA A R+ASL++MV Sbjct: 1 MTDTDLFTADSAERTELPNVVNTETSTASEGPAVTTTTAESAPTADVASGDRAASLTSMV 60 Query: 40 LPELRALAKEIGVEGASGLRKSELIAAIRAHRGESNGRTAE-ASSPAT 86 LPELRALA++IGVEGASG+RKSELIAAIR RG+ AE A++P T Sbjct: 61 LPELRALARQIGVEGASGMRKSELIAAIRERRGDGGAAKAESAAAPQT 108 >tr|A3Q3C8|A3Q3C8_MYCSJ Tax_Id=164757 SubName: Full=Transcription termination factor Rho;[Mycobacterium sp.] Length = 663 Score = 727 bits (1877), Expect = 0.0 Identities = 367/391 (93%), Positives = 381/391 (97%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 DTE+REDDVVQPVAGILDVLDNYAFVRTSGYL GPNDVYVSMNMVRKNGLRRGDAVTGAV Sbjct: 273 DTEIREDDVVQPVAGILDVLDNYAFVRTSGYLPGPNDVYVSMNMVRKNGLRRGDAVTGAV 332 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 +VP+EG+ GGQNQRQKFNPLVRLD+VNGG VEDA+KRPEFGKLTPLYPN+RLRLETSP++ Sbjct: 333 KVPKEGEGGGQNQRQKFNPLVRLDSVNGGPVEDARKRPEFGKLTPLYPNQRLRLETSPDK 392 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 393 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERPEEV 452 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 453 TDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 512 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTI+ATAMVETGSTGDTVIFEEFK Sbjct: 513 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIVATAMVETGSTGDTVIFEEFK 572 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLL PDEFAIVHKLRRVLSGLDSHQAI Sbjct: 573 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLGPDEFAIVHKLRRVLSGLDSHQAI 632 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTKTNYEFLVQVSK PGS+D D Sbjct: 633 DLLMSQLRKTKTNYEFLVQVSKNTPGSVDND 663 Score = 85.1 bits (209), Expect = 3e-14 Identities = 55/108 (50%), Positives = 68/108 (62%), Gaps = 22/108 (20%) Query: 1 MTETDLFTADNA------------SDTGDLSGAVKSNTAPRA---------RSASLSTMV 39 MT+TDLFTAD+A + T AV + TA A R+ASL++MV Sbjct: 1 MTDTDLFTADSAERTELPNVVNTETSTASEGPAVTTTTAESAPTADVASGDRAASLTSMV 60 Query: 40 LPELRALAKEIGVEGASGLRKSELIAAIRAHRGESNGRTAE-ASSPAT 86 LPELRALA++IGVEGASG+RKSELIAAIR RG+ AE A++P T Sbjct: 61 LPELRALARQIGVEGASGMRKSELIAAIRERRGDGGAAKAESAAAPQT 108 >tr|A1UK01|A1UK01_MYCSK Tax_Id=189918 SubName: Full=Transcription termination factor Rho;[Mycobacterium sp.] Length = 663 Score = 727 bits (1877), Expect = 0.0 Identities = 367/391 (93%), Positives = 381/391 (97%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 DTE+REDDVVQPVAGILDVLDNYAFVRTSGYL GPNDVYVSMNMVRKNGLRRGDAVTGAV Sbjct: 273 DTEIREDDVVQPVAGILDVLDNYAFVRTSGYLPGPNDVYVSMNMVRKNGLRRGDAVTGAV 332 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 +VP+EG+ GGQNQRQKFNPLVRLD+VNGG VEDA+KRPEFGKLTPLYPN+RLRLETSP++ Sbjct: 333 KVPKEGEGGGQNQRQKFNPLVRLDSVNGGPVEDARKRPEFGKLTPLYPNQRLRLETSPDK 392 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 393 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERPEEV 452 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 453 TDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 512 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTI+ATAMVETGSTGDTVIFEEFK Sbjct: 513 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIVATAMVETGSTGDTVIFEEFK 572 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLL PDEFAIVHKLRRVLSGLDSHQAI Sbjct: 573 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLGPDEFAIVHKLRRVLSGLDSHQAI 632 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTKTNYEFLVQVSK PGS+D D Sbjct: 633 DLLMSQLRKTKTNYEFLVQVSKNTPGSVDND 663 Score = 85.1 bits (209), Expect = 3e-14 Identities = 55/108 (50%), Positives = 68/108 (62%), Gaps = 22/108 (20%) Query: 1 MTETDLFTADNA------------SDTGDLSGAVKSNTAPRA---------RSASLSTMV 39 MT+TDLFTAD+A + T AV + TA A R+ASL++MV Sbjct: 1 MTDTDLFTADSAERTELPNVVNTETSTASEGPAVTTTTAESAPTADVASGDRAASLTSMV 60 Query: 40 LPELRALAKEIGVEGASGLRKSELIAAIRAHRGESNGRTAE-ASSPAT 86 LPELRALA++IGVEGASG+RKSELIAAIR RG+ AE A++P T Sbjct: 61 LPELRALARQIGVEGASGMRKSELIAAIRERRGDGGAAKAESAAAPQT 108 >tr|A0PUL3|A0PUL3_MYCUA Tax_Id=362242 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium ulcerans] Length = 621 Score = 719 bits (1857), Expect = 0.0 Identities = 370/392 (94%), Positives = 380/392 (96%), Gaps = 2/392 (0%) Query: 273 NDTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGA 332 +D ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGP+DVYVSMNMVRKNGLRRGDAVTGA Sbjct: 232 SDAELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGA 291 Query: 333 VRVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPE 392 VRVPREG+ NQRQKFNPLVRLD+VNGGSVEDAKKRPEFGKLTPLYPN+RLRLET+ E Sbjct: 292 VRVPREGEQ--PNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQRLRLETTTE 349 Query: 393 RLSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEE 452 RL+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEE Sbjct: 350 RLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEE 409 Query: 453 VTDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN 512 VTDM RSVKGEVIASTFDRPPSDHT AAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN Sbjct: 410 VTDMTRSVKGEVIASTFDRPPSDHTSAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN 469 Query: 513 NASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEF 572 NASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEF Sbjct: 470 NASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEF 529 Query: 573 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQA 632 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQA Sbjct: 530 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQA 589 Query: 633 IDLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 IDLL+SQLRKTK NYEFLVQVSKT PG+MD D Sbjct: 590 IDLLMSQLRKTKNNYEFLVQVSKTTPGNMDND 621 Score = 75.5 bits (184), Expect = 2e-11 Identities = 41/84 (48%), Positives = 58/84 (69%), Gaps = 3/84 (3%) Query: 1 MTETDLFTADNASDTGDLSGAVKSNTAP---RARSASLSTMVLPELRALAKEIGVEGASG 57 MT+TDL TA ++D S +V +++ A + +L+TMVLPELRALA ++GV+G SG Sbjct: 1 MTDTDLITAGESTDADKKSDSVTKDSSDLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 Query: 58 LRKSELIAAIRAHRGESNGRTAEA 81 +RK+ELIAAI+ R +NG A A Sbjct: 61 MRKNELIAAIQEFRDRTNGTPAAA 84 >sp|P66028|RHO_MYCTU Tax_Id=1773 (rho)RecName: Full=Transcription termination factor rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase rho;[Mycobacterium tuberculosis] Length = 602 Score = 718 bits (1853), Expect = 0.0 Identities = 368/391 (94%), Positives = 378/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >sp|P66029|RHO_MYCBO Tax_Id=1765 (rho)RecName: Full=Transcription termination factor rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase rho;[Mycobacterium bovis] Length = 602 Score = 718 bits (1853), Expect = 0.0 Identities = 368/391 (94%), Positives = 378/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|Q73X46|Q73X46_MYCPA Tax_Id=1770 (rho)SubName: Full=Rho;[Mycobacterium paratuberculosis] Length = 620 Score = 718 bits (1853), Expect = 0.0 Identities = 367/391 (93%), Positives = 379/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 D ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGP+DVYVSMNMVRKNGLRRGDAVTGAV Sbjct: 232 DAELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAV 291 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP++G+ NQRQKFNPLVRLD+VNGGSVEDAKKRPEFGKLTPLYPN+RLRLET+P+R Sbjct: 292 RVPKDGEQ--PNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDR 349 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEEV Sbjct: 350 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEV 409 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 410 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 469 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 470 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 529 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAI Sbjct: 530 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAI 589 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PG+MD D Sbjct: 590 DLLMSQLRKTKNNYEFLVQVSKTTPGAMDND 620 Score = 83.2 bits (204), Expect = 1e-13 Identities = 49/98 (50%), Positives = 69/98 (70%), Gaps = 6/98 (6%) Query: 1 MTETDLFTADNASDTGDLSGAVKSNTAPRARS----ASLSTMVLPELRALAKEIGVEGAS 56 MT+TDLFTA +D LS AV ++T P A++ +L+TMVLPELRALA ++GV+G S Sbjct: 1 MTDTDLFTAGENTDANQLSTAVTTDT-PDAKTHAPVGALTTMVLPELRALANQVGVKGTS 59 Query: 57 GLRKSELIAAIRAHRGESNGRT-AEASSPATADAQTGE 93 G+RK+ELIAAI+ RG++NG AE ++ A +G+ Sbjct: 60 GMRKNELIAAIKEVRGQANGAAPAEQANGAEPAEDSGK 97 >tr|C6DU73|C6DU73_MYCTK Tax_Id=478434 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis] Length = 602 Score = 718 bits (1853), Expect = 0.0 Identities = 368/391 (94%), Positives = 378/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|C1AMU1|C1AMU1_MYCBT Tax_Id=561275 (rho)SubName: Full=Transcription termination factor;[Mycobacterium bovis] Length = 602 Score = 718 bits (1853), Expect = 0.0 Identities = 368/391 (94%), Positives = 378/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|B2HQL5|B2HQL5_MYCMM Tax_Id=216594 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium marinum] Length = 621 Score = 718 bits (1853), Expect = 0.0 Identities = 369/392 (94%), Positives = 379/392 (96%), Gaps = 2/392 (0%) Query: 273 NDTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGA 332 +D ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGP+DVYVSMNMVRKNGLRRGDAVTGA Sbjct: 232 SDAELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGA 291 Query: 333 VRVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPE 392 VRVPREG+ NQRQKFNPLVRLD+VNGGSVEDAKKRPEFGKLTPLYPN+RLRLET+ E Sbjct: 292 VRVPREGEQ--PNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQRLRLETTTE 349 Query: 393 RLSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEE 452 RL+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEE Sbjct: 350 RLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEE 409 Query: 453 VTDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN 512 VTDM RSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYN Sbjct: 410 VTDMTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN 469 Query: 513 NASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEF 572 NASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEF Sbjct: 470 NASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEF 529 Query: 573 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQA 632 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQA Sbjct: 530 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQA 589 Query: 633 IDLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 IDLL+SQLRKTK NYEFLVQVSKT PG+MD D Sbjct: 590 IDLLMSQLRKTKNNYEFLVQVSKTTPGNMDND 621 Score = 76.3 bits (186), Expect = 1e-11 Identities = 42/93 (45%), Positives = 61/93 (65%), Gaps = 3/93 (3%) Query: 1 MTETDLFTADNASDTGDLSGAVKSNTAP---RARSASLSTMVLPELRALAKEIGVEGASG 57 MT+TDL TA ++D S +V +++ A + +L+TMVLPELRALA ++GV+G SG Sbjct: 1 MTDTDLITAGESTDADKKSDSVTKDSSDLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 Query: 58 LRKSELIAAIRAHRGESNGRTAEASSPATADAQ 90 +RK+ELIAAI+ R +NG A A + + Q Sbjct: 61 MRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQ 93 >tr|A5WLX8|A5WLX8_MYCTF Tax_Id=336982 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis] Length = 602 Score = 718 bits (1853), Expect = 0.0 Identities = 368/391 (94%), Positives = 378/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|A5U1Z6|A5U1Z6_MYCTA Tax_Id=419947 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium tuberculosis] Length = 602 Score = 718 bits (1853), Expect = 0.0 Identities = 368/391 (94%), Positives = 378/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|A1KI85|A1KI85_MYCBP Tax_Id=410289 (rho)SubName: Full=Probable transcription termination factor rho homolog;[Mycobacterium bovis] Length = 602 Score = 718 bits (1853), Expect = 0.0 Identities = 368/391 (94%), Positives = 378/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|A0QCW4|A0QCW4_MYCA1 Tax_Id=243243 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium avium] Length = 596 Score = 718 bits (1853), Expect = 0.0 Identities = 367/391 (93%), Positives = 379/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 D ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGP+DVYVSMNMVRKNGLRRGDAVTGAV Sbjct: 208 DAELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAV 267 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP++G+ NQRQKFNPLVRLD+VNGGSVEDAKKRPEFGKLTPLYPN+RLRLET+P+R Sbjct: 268 RVPKDGEQ--PNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDR 325 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEEV Sbjct: 326 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEV 385 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 386 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 445 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 446 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 505 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAI Sbjct: 506 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAI 565 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PG+MD D Sbjct: 566 DLLMSQLRKTKNNYEFLVQVSKTTPGAMDND 596 Score = 63.5 bits (153), Expect = 9e-08 Identities = 33/61 (54%), Positives = 47/61 (77%), Gaps = 1/61 (1%) Query: 34 SLSTMVLPELRALAKEIGVEGASGLRKSELIAAIRAHRGESNGRT-AEASSPATADAQTG 92 +L+TMVLPELRALA ++GV+G SG+RK+ELIAAI+ RG++NG AE ++ A +G Sbjct: 16 ALTTMVLPELRALANQVGVKGTSGMRKNELIAAIKEVRGQANGAAPAEQANGAEPAEDSG 75 Query: 93 E 93 + Sbjct: 76 K 76 >tr|D6FZF5|D6FZF5_MYCTU Tax_Id=478435 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis KZN 605] Length = 602 Score = 718 bits (1853), Expect = 0.0 Identities = 368/391 (94%), Positives = 378/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|D6FRE1|D6FRE1_MYCTU Tax_Id=611304 SubName: Full=Transcription termination factor Rho;[Mycobacterium tuberculosis K85] Length = 557 Score = 718 bits (1853), Expect = 0.0 Identities = 368/391 (94%), Positives = 378/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAV Sbjct: 169 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 228 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 229 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 286 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 287 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 346 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 347 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 406 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 407 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 466 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 467 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 526 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 527 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 557 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|D6FGE3|D6FGE3_MYCTU Tax_Id=611303 SubName: Full=Transcription termination factor Rho;[Mycobacterium tuberculosis CPHL_A] Length = 602 Score = 718 bits (1853), Expect = 0.0 Identities = 368/391 (94%), Positives = 378/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|D5Z2K9|D5Z2K9_MYCTU Tax_Id=537209 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis GM 1503] Length = 602 Score = 718 bits (1853), Expect = 0.0 Identities = 368/391 (94%), Positives = 378/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|D5YQS7|D5YQS7_MYCTU Tax_Id=515616 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis 02_1987] Length = 602 Score = 718 bits (1853), Expect = 0.0 Identities = 368/391 (94%), Positives = 378/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|D5YEE5|D5YEE5_MYCTU Tax_Id=520140 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis EAS054] Length = 602 Score = 718 bits (1853), Expect = 0.0 Identities = 368/391 (94%), Positives = 378/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|D5Y2T9|D5Y2T9_MYCTU Tax_Id=520141 SubName: Full=Transcription termination factor Rho;[Mycobacterium tuberculosis T85] Length = 602 Score = 718 bits (1853), Expect = 0.0 Identities = 368/391 (94%), Positives = 378/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|A4KGL8|A4KGL8_MYCTU Tax_Id=395095 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis str. Haarlem] Length = 602 Score = 718 bits (1853), Expect = 0.0 Identities = 368/391 (94%), Positives = 378/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|A2VHJ3|A2VHJ3_MYCTU Tax_Id=348776 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis C] Length = 602 Score = 718 bits (1853), Expect = 0.0 Identities = 368/391 (94%), Positives = 378/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+RRGDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|B8ZR29|B8ZR29_MYCLB Tax_Id=561304 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium leprae] Length = 610 Score = 715 bits (1846), Expect = 0.0 Identities = 367/391 (93%), Positives = 379/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGP+DVYVSM+MVRKNGLRRGDAVTGAV Sbjct: 222 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVPREG+ G +QRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLET+P+R Sbjct: 282 RVPREGEQG--HQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDR 339 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNN ECHLMVVLVDERPEEV Sbjct: 340 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEV 399 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 400 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 459 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGD VIFEEFK Sbjct: 460 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFK 519 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAI Sbjct: 520 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAI 579 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTKTNYEFLVQVSKT PGSMD D Sbjct: 580 DLLMSQLRKTKTNYEFLVQVSKTTPGSMDDD 610 Score = 79.0 bits (193), Expect = 2e-12 Identities = 45/82 (54%), Positives = 55/82 (67%), Gaps = 6/82 (7%) Query: 1 MTETDLFTADNASDTGDLSGAVKSNT------APRARSASLSTMVLPELRALAKEIGVEG 54 MTETDL T +D +L+ AV ++T A SLSTMVLPELRALA + GV+G Sbjct: 1 MTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 Query: 55 ASGLRKSELIAAIRAHRGESNG 76 SG+RKSELIAAI RG++NG Sbjct: 61 TSGMRKSELIAAIEECRGQANG 82 >tr|D6F3Q4|D6F3Q4_MYCTU Tax_Id=611302 SubName: Full=Transcription termination factor Rho;[Mycobacterium tuberculosis T46] Length = 602 Score = 715 bits (1846), Expect = 0.0 Identities = 367/391 (93%), Positives = 377/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+R GDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRGGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|D5ZF60|D5ZF60_MYCTU Tax_Id=537210 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis T17] Length = 602 Score = 715 bits (1846), Expect = 0.0 Identities = 367/391 (93%), Positives = 377/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNG+R GDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRGGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|D5PGH8|D5PGH8_9MYCO Tax_Id=525368 (rho)SubName: Full=Transcription termination factor Rho; EC=3.6.1.-;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 615 Score = 715 bits (1845), Expect = 0.0 Identities = 366/391 (93%), Positives = 378/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGP+DVYVSMNMVRKNGLRRGDAVTGAV Sbjct: 227 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAV 286 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP++G+ NQRQKFNPLVRLD+VNGG VEDAKKRP+F KLTPLYPN+RLRLET+P+R Sbjct: 287 RVPKDGEQ--PNQRQKFNPLVRLDSVNGGPVEDAKKRPDFSKLTPLYPNQRLRLETTPDR 344 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 345 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 404 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDM RSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 405 TDMTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 464 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 465 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 524 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 525 GTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 584 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 585 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDND 615 Score = 95.9 bits (237), Expect = 2e-17 Identities = 51/84 (60%), Positives = 66/84 (78%), Gaps = 3/84 (3%) Query: 1 MTETDLFTADNASDTGDLSGAVKSNTAP---RARSASLSTMVLPELRALAKEIGVEGASG 57 MT+TDLFTAD ++D+ ++S AV +T+ AR SLSTMVLPELRALA E+GV+G SG Sbjct: 1 MTDTDLFTADASTDSNEVSNAVTPDTSDVKTNARVGSLSTMVLPELRALANEVGVKGTSG 60 Query: 58 LRKSELIAAIRAHRGESNGRTAEA 81 +RK+ELIAAI+ RG+SNG +A A Sbjct: 61 MRKNELIAAIKEIRGQSNGTSAPA 84 >sp|P45835|RHO_MYCLE Tax_Id=1769 (rho)RecName: Full=Transcription termination factor rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase rho;[Mycobacterium leprae] Length = 610 Score = 714 bits (1843), Expect = 0.0 Identities = 366/391 (93%), Positives = 379/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELR+DDVVQPVAGILDVLDNYAFVRTSGYLAGP+DVYVSM+MVRKNGLRRGDAVTGAV Sbjct: 222 EAELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAV 281 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVPREG+ G +QRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN+RLRLET+P+R Sbjct: 282 RVPREGEQG--HQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDR 339 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNN ECHLMVVLVDERPEEV Sbjct: 340 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEV 399 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 400 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 459 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGD VIFEEFK Sbjct: 460 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFK 519 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAI Sbjct: 520 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAI 579 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTKTNYEFLVQVSKT PGSMD D Sbjct: 580 DLLMSQLRKTKTNYEFLVQVSKTTPGSMDDD 610 Score = 79.0 bits (193), Expect = 2e-12 Identities = 45/82 (54%), Positives = 55/82 (67%), Gaps = 6/82 (7%) Query: 1 MTETDLFTADNASDTGDLSGAVKSNT------APRARSASLSTMVLPELRALAKEIGVEG 54 MTETDL T +D +L+ AV ++T A SLSTMVLPELRALA + GV+G Sbjct: 1 MTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 Query: 55 ASGLRKSELIAAIRAHRGESNG 76 SG+RKSELIAAI RG++NG Sbjct: 61 TSGMRKSELIAAIEECRGQANG 82 >tr|A1TD72|A1TD72_MYCVP Tax_Id=350058 SubName: Full=Transcription termination factor Rho;[Mycobacterium vanbaalenii] Length = 684 Score = 711 bits (1834), Expect = 0.0 Identities = 364/391 (93%), Positives = 376/391 (96%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV Sbjct: 296 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 355 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP++G+ NQRQKFNPLVRLD+VNGG VE+AKKRPEF KLTPLYPN RLRLETS ++ Sbjct: 356 RVPKDGEQS--NQRQKFNPLVRLDSVNGGPVEEAKKRPEFQKLTPLYPNTRLRLETSSDK 413 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 414 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERPEEV 473 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 474 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 533 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 534 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 593 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFA+VHKLRRVLSGLD HQAI Sbjct: 594 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAVVHKLRRVLSGLDPHQAI 653 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSK PG +D D Sbjct: 654 DLLMSQLRKTKNNYEFLVQVSKNTPGGVDND 684 Score = 92.4 bits (228), Expect = 2e-16 Identities = 58/116 (50%), Positives = 74/116 (63%), Gaps = 24/116 (20%) Query: 1 MTETDLFTADNASDTGDLSGAVKSNT---------------------APRARSASLSTMV 39 MT+TDLFTA +A D+G+L V + A RAR +L+++V Sbjct: 1 MTDTDLFTAGSA-DSGELPNTVTATNSASSEQAGAPAAAPAADEAPAATRARRGALTSLV 59 Query: 40 LPELRALAKEIGVEGASGLRKSELIAAIRAHRGESNGRTAEAS--SPATADAQTGE 93 LPELRA+AKEIGVEGASG+RKSELIAAIR RGE+NG+ A S + ATA A +G+ Sbjct: 60 LPELRAMAKEIGVEGASGMRKSELIAAIRERRGEANGKPAAKSDTAEATAAAPSGD 115 >tr|A4T8L9|A4T8L9_MYCGI Tax_Id=350054 SubName: Full=Transcription termination factor Rho;[Mycobacterium gilvum] Length = 691 Score = 708 bits (1827), Expect = 0.0 Identities = 364/392 (92%), Positives = 375/392 (95%), Gaps = 1/392 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV Sbjct: 300 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 359 Query: 334 RVPREGDSGG-QNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPE 392 RVPR+ + GG +N RQKFNPLVRLDTVNG VE+AKKRPEF KLTPLYPN+RLRLETS + Sbjct: 360 RVPRDNEGGGDKNPRQKFNPLVRLDTVNGKPVEEAKKRPEFTKLTPLYPNQRLRLETSSD 419 Query: 393 RLSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEE 452 +L+TRVIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAITRNNPECHLMVVLVDERPEE Sbjct: 420 KLTTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERPEE 479 Query: 453 VTDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN 512 VTDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN Sbjct: 480 VTDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN 539 Query: 513 NASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEF 572 NASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEF Sbjct: 540 NASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEF 599 Query: 573 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQA 632 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLS DEFA+VHKLRRVLSGLD HQA Sbjct: 600 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSTDEFAVVHKLRRVLSGLDPHQA 659 Query: 633 IDLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 IDLL+SQLRKTK NYEFLVQVSK PG D D Sbjct: 660 IDLLMSQLRKTKNNYEFLVQVSKNTPGGNDHD 691 Score = 97.1 bits (240), Expect = 8e-18 Identities = 54/105 (51%), Positives = 70/105 (66%), Gaps = 14/105 (13%) Query: 1 MTETDLFTADNASDTGDLSGAVKSN------------TAPRARSASLSTMVLPELRALAK 48 MT+TDLFTA +D+G++ V ++ AP R SL++MVLPELRA+AK Sbjct: 1 MTDTDLFTAGGNADSGEMPNTVTADISTSAPADSAPAAAPARRGGSLTSMVLPELRAMAK 60 Query: 49 EIGVEGASGLRKSELIAAIRAHRGESNG--RTAEASSPATADAQT 91 EIGVEGASG+RK ELIAAIR RGE+NG T + +P +A A+T Sbjct: 61 EIGVEGASGMRKGELIAAIRERRGEANGSAETKKGDAPTSAPAET 105 >tr|B1MLU7|B1MLU7_MYCA9 Tax_Id=561007 SubName: Full=Probable transcription termination factor Rho;[Mycobacterium abscessus] Length = 646 Score = 707 bits (1826), Expect = 0.0 Identities = 359/387 (92%), Positives = 377/387 (97%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 +TELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMN+VRKNGLRRGDA+TGAV Sbjct: 251 ETELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLVRKNGLRRGDAITGAV 310 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVPR+ D+G QNQRQKFNPLVRLD+VNGG VEDAKKRP+F KLTPLYPN+RLRLET+ E+ Sbjct: 311 RVPRDPDAGNQNQRQKFNPLVRLDSVNGGPVEDAKKRPDFTKLTPLYPNQRLRLETTTEK 370 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTI+Q+IANAI+ NNPECHLMVVLVDERPEEV Sbjct: 371 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQNIANAISANNPECHLMVVLVDERPEEV 430 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 431 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 490 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE+GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 491 ASPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFK 550 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELL+S DEFAIVHKLRRVLSGLDSHQAI Sbjct: 551 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLMSGDEFAIVHKLRRVLSGLDSHQAI 610 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGS 660 DLL+SQLRKTK NYEFLVQVSK PG+ Sbjct: 611 DLLMSQLRKTKNNYEFLVQVSKNTPGA 637 Score = 78.2 bits (191), Expect = 4e-12 Identities = 43/98 (43%), Positives = 62/98 (63%), Gaps = 9/98 (9%) Query: 1 MTETDLFTADNASDTGDLSGAVKSNTAPRARSA----SLSTMVLPELRALAKEIGVEGAS 56 MT+TDL + A +T + A S+ A + R +LSTMVLPELRALA ++GV+G S Sbjct: 1 MTDTDLIATEAAPETPEAPAAASSDRAGKERRGDGLGALSTMVLPELRALASQVGVKGTS 60 Query: 57 GLRKSELIAAIRAHRG-----ESNGRTAEASSPATADA 89 G+RK +LIAAIR H+G ++N + A++ P + A Sbjct: 61 GMRKGDLIAAIREHQGALGAPKNNNQAAQSQQPQASSA 98 >tr|Q5Z0Z4|Q5Z0Z4_NOCFA Tax_Id=37329 (rho)SubName: Full=Putative transcription termination factor Rho;[Nocardia farcinica] Length = 681 Score = 688 bits (1775), Expect = 0.0 Identities = 348/389 (89%), Positives = 372/389 (95%), Gaps = 2/389 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + E+REDDV+QPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMN+VRKNGLRRGDA+TGAV Sbjct: 294 ELEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLVRKNGLRRGDAITGAV 353 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 R PR+G+ G NQRQKF+PLVRLDTVNGG VE AK+RPEFGKLTPLYPN+RLRLET+P + Sbjct: 354 RAPRDGEQG--NQRQKFDPLVRLDTVNGGDVEAAKRRPEFGKLTPLYPNQRLRLETTPNK 411 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAI NNPEC+LMVVLVDERPEEV Sbjct: 412 LTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIATNNPECYLMVVLVDERPEEV 471 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVE GKDVVVLLDSITRLGRAYNN Sbjct: 472 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEMGKDVVVLLDSITRLGRAYNN 531 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 +SPASGRILSGGVDSTALYPPKRFLGAARNIE+GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 532 SSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFK 591 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDE A++HKLRRVLSGLDSHQAI Sbjct: 592 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEAAVLHKLRRVLSGLDSHQAI 651 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMD 662 DLLI +L+K+K N EFL+QVSKTAPG++D Sbjct: 652 DLLIDRLKKSKNNLEFLMQVSKTAPGALD 680 Score = 62.4 bits (150), Expect = 2e-07 Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 11/99 (11%) Query: 1 MTETDLFTADNASDTGDLSGAVKSNTAPRARSAS--------LSTMVLPELRALAKEIGV 52 MT+TDL SG +S + ++ + L+ M+LP+LRALA E+G+ Sbjct: 1 MTDTDLLATPGVDSNPSSSGGRESESGQISKMSEHTDVARSGLTGMLLPQLRALAGELGI 60 Query: 53 EGASGLRKSELIAAIRAHRGESNGRTAEASSPATADAQT 91 G SG+RK +LIAAI+ ++ GR A+A PA ++A++ Sbjct: 61 RGTSGMRKGDLIAAIKENQA---GRAAKADKPARSEAKS 96 >tr|D5XSS7|D5XSS7_MYCTU Tax_Id=515617 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis T92] Length = 602 Score = 686 bits (1769), Expect = 0.0 Identities = 355/391 (90%), Positives = 366/391 (93%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ELREDDVVQPVAGILDVLDNYAFVRTS YL GP+DVYVSMNMVRKNG+R GDAVTGAV Sbjct: 214 EAELREDDVVQPVAGILDVLDNYAFVRTSSYLPGPHDVYVSMNMVRKNGMRGGDAVTGAV 273 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVP+EG+ NQRQKFNPLVRLD++NGGSVEDAKKRPEFGKLTPLYPN LRLETS ER Sbjct: 274 RVPKEGEQ--PNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNSGLRLETSTER 331 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDLI+PIGK A IVS + KTTILQDIANAITRNNPECHLMVVLVDERPEEV Sbjct: 332 LTTRVIDLILPIGKVNAAFIVSAVQRVKTTILQDIANAITRNNPECHLMVVLVDERPEEV 391 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN Sbjct: 392 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 451 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 452 ASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFK 511 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI Sbjct: 512 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 571 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQLRKTK NYEFLVQVSKT PGSMD D Sbjct: 572 DLLMSQLRKTKNNYEFLVQVSKTTPGSMDSD 602 Score = 67.4 bits (163), Expect = 6e-09 Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 1 MTETDLFTADNASD--TGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGL 58 MT+TDL TA ++D D + + + SL+TMVLPELRALA GV+G SG+ Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPDLNADEPAGSLATMVLPELRALANRAGVKGTSGM 60 Query: 59 RKSELIAAIRAHRGESNGRTA 79 RK+ELIAAI R ++NG A Sbjct: 61 RKNELIAAIEEIRRQANGAPA 81 >tr|C1AW12|C1AW12_RHOOB Tax_Id=632772 (rho)SubName: Full=Transcription termination factor Rho;[Rhodococcus opacus] Length = 687 Score = 682 bits (1761), Expect = 0.0 Identities = 345/389 (88%), Positives = 371/389 (95%), Gaps = 2/389 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 +TE+REDDV+QPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMN++RKNGLRRGDA+TGAV Sbjct: 300 ETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLRRGDAITGAV 359 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RV REGD G NQRQKFNPLVR+DTVNGG VE AKKRPEFGKLTPLYPN+RLRLET+P Sbjct: 360 RVGREGDQG--NQRQKFNPLVRIDTVNGGDVEAAKKRPEFGKLTPLYPNQRLRLETTPNI 417 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDL+MPIGKGQRALIVSPPKAGKT++LQ IANAI NNPEC+LMVVLVDERPEEV Sbjct: 418 LTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAIATNNPECYLMVVLVDERPEEV 477 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVI+STFDRPP DHT AELAIERAKRLVE GKDVVVLLDSITRLGRAYNN Sbjct: 478 TDMQRSVKGEVISSTFDRPPGDHTSVAELAIERAKRLVEAGKDVVVLLDSITRLGRAYNN 537 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 +SPASGRILSGGVDSTALYPPKRFLGAARNIE+GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 538 SSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFK 597 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDE A++HKLRRVLSGLDSHQAI Sbjct: 598 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEAAVLHKLRRVLSGLDSHQAI 657 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMD 662 DLLI +L+K+K+N EFL+QVSKTAPG++D Sbjct: 658 DLLIDRLKKSKSNLEFLMQVSKTAPGAID 686 Score = 61.2 bits (147), Expect = 5e-07 Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 12/97 (12%) Query: 1 MTETDLFTADNASDTGDLSGA------------VKSNTAPRARSASLSTMVLPELRALAK 48 MT+TDL A + + D GA + A R A LS MVL ELR+LA Sbjct: 1 MTDTDLIAAPVRASSVDTVGAQAGDSTQASSVTASTKRADARRGAGLSGMVLTELRSLAG 60 Query: 49 EIGVEGASGLRKSELIAAIRAHRGESNGRTAEASSPA 85 E+G++G SG+RK +LIAAI+ +G S A A+ A Sbjct: 61 ELGIKGISGMRKGDLIAAIKERQGGSAAPAAAATETA 97 >tr|D0L9H1|D0L9H1_GORB4 Tax_Id=526226 SubName: Full=Transcription termination factor Rho;[Gordonia bronchialis] Length = 662 Score = 681 bits (1758), Expect = 0.0 Identities = 346/391 (88%), Positives = 370/391 (94%), Gaps = 2/391 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ++ EDDV+QPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMN+VRKNGLRRGDA+TGAV Sbjct: 274 EPQVSEDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLVRKNGLRRGDAITGAV 333 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 +VPREG+ QNQRQKFNPLVRLDTVNGG VE A+KRPEFGKLTPLYPN+RLRLET+PER Sbjct: 334 KVPREGEQ--QNQRQKFNPLVRLDTVNGGDVEAARKRPEFGKLTPLYPNQRLRLETTPER 391 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIT NNPECHLMVVLVDERPEEV Sbjct: 392 LDTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITINNPECHLMVVLVDERPEEV 451 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AELAIERAKRLVE GKDVVVLLDSITRLGRAYNN Sbjct: 452 TDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVESGKDVVVLLDSITRLGRAYNN 511 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 ASPASGRILSGGVDSTALYPPKRFLGAARNIE+GGSLTIIA+A+VETGSTGDTVIFEEFK Sbjct: 512 ASPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIASALVETGSTGDTVIFEEFK 571 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIA+RRVFPAVDVN S TRKDEL++SP+EF+I+HKLRRVLSGLDS QAI Sbjct: 572 GTGNAELKLDRKIADRRVFPAVDVNQSSTRKDELMMSPEEFSIMHKLRRVLSGLDSQQAI 631 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 DLL+SQL+KTKTN EFL+QV APG+M D Sbjct: 632 DLLLSQLKKTKTNVEFLMQVQSNAPGAMKDD 662 Score = 63.9 bits (154), Expect = 7e-08 Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 14/101 (13%) Query: 1 MTETDLFTA---DNASDTGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASG 57 MTETDL TA + ++D+ A KS T R + L+ MVL ELRA+A E+G++G SG Sbjct: 1 MTETDLITAPAEEGSADSAASGAASKSRT--RTQRTGLTGMVLTELRAVAGELGIKGTSG 58 Query: 58 LRKSELIAAIRAHR---------GESNGRTAEASSPATADA 89 +RK +LIAAI+ + GE+ + AS+P + A Sbjct: 59 MRKGDLIAAIKERQAGAASANGIGEAEKKARRASAPKDSGA 99 >tr|Q0SGN6|Q0SGN6_RHOSR Tax_Id=101510 SubName: Full=Transcription termination factor Rho;[Rhodococcus sp.] Length = 694 Score = 681 bits (1757), Expect = 0.0 Identities = 344/389 (88%), Positives = 371/389 (95%), Gaps = 2/389 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 +TE+REDDV+QPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMN++RKNGLRRGDA+TGAV Sbjct: 307 ETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLRRGDAITGAV 366 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RV REG+ G NQRQKFNPLVR+DTVNGG VE AKKRPEFGKLTPLYPN+RLRLET+P Sbjct: 367 RVGREGEQG--NQRQKFNPLVRIDTVNGGDVEAAKKRPEFGKLTPLYPNQRLRLETTPNI 424 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDL+MPIGKGQRALIVSPPKAGKT++LQ IANAI NNPEC+LMVVLVDERPEEV Sbjct: 425 LTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAIATNNPECYLMVVLVDERPEEV 484 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVI+STFDRPP DHT AELAIERAKRLVE GKDVVVLLDSITRLGRAYNN Sbjct: 485 TDMQRSVKGEVISSTFDRPPGDHTSVAELAIERAKRLVEAGKDVVVLLDSITRLGRAYNN 544 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 +SPASGRILSGGVDSTALYPPKRFLGAARNIE+GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 545 SSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFK 604 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDE A++HKLRRVLSGLDSHQAI Sbjct: 605 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEAAVLHKLRRVLSGLDSHQAI 664 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMD 662 DLLI +L+K+K+N EFL+QVSKTAPG++D Sbjct: 665 DLLIDRLKKSKSNIEFLMQVSKTAPGAID 693 Score = 63.2 bits (152), Expect = 1e-07 Identities = 43/104 (41%), Positives = 55/104 (52%), Gaps = 19/104 (18%) Query: 1 MTETDLFTA-----------------DNASDTGDLSGAVKSNT--APRARSASLSTMVLP 41 MT+TDL A AS T GAV ++T A R A LS MVL Sbjct: 1 MTDTDLIAAPVRASSVDTVGAQAGDSSQASSTAPGQGAVTASTKRAEARRGAGLSGMVLT 60 Query: 42 ELRALAKEIGVEGASGLRKSELIAAIRAHRGESNGRTAEASSPA 85 ELR LA E+G++G SG+RK +LIAAI+ +G S+ A A+ A Sbjct: 61 ELRTLAGELGIKGISGMRKGDLIAAIKERQGGSSAPAAAATEAA 104 >tr|C1A1Z2|C1A1Z2_RHOE4 Tax_Id=234621 (rho)SubName: Full=Transcription termination factor Rho;[Rhodococcus erythropolis] Length = 712 Score = 669 bits (1726), Expect = 0.0 Identities = 337/389 (86%), Positives = 366/389 (94%), Gaps = 2/389 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 +TE+REDDV+QPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMN++RKNGLRRGDA+TGAV Sbjct: 325 ETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLRRGDAITGAV 384 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RV R+G+ G +QRQKFNPLVR+DTVNGG VE AKKRPEF KLTPLYPN+RLRLET Sbjct: 385 RVSRDGEQG--SQRQKFNPLVRIDTVNGGDVEAAKKRPEFNKLTPLYPNQRLRLETEQHI 442 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDL+MPIGKGQRALIVSPPKAGKT++LQ IANA+ NNPEC+LMV+LVDERPEEV Sbjct: 443 LTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAVATNNPECYLMVILVDERPEEV 502 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVI+STFDRPP DHT AELAIERAKRLVE GKDVVVLLDSITRLGRAYNN Sbjct: 503 TDMQRSVKGEVISSTFDRPPGDHTAVAELAIERAKRLVEMGKDVVVLLDSITRLGRAYNN 562 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 +SPASGRILSGGVDSTALYPPKRFLGAARNIE+GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 563 SSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFK 622 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPS TRKDELLLSPDE A++HKLRRVLSGLDSHQAI Sbjct: 623 GTGNAELKLDRKIAERRVFPAVDVNPSSTRKDELLLSPDEAAVLHKLRRVLSGLDSHQAI 682 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMD 662 DLLI +L+K+K N EFL+QVSKTAPG++D Sbjct: 683 DLLIDRLKKSKNNLEFLMQVSKTAPGAID 711 Score = 65.5 bits (158), Expect = 2e-08 Identities = 46/100 (46%), Positives = 60/100 (60%), Gaps = 13/100 (13%) Query: 1 MTETDLF--TADNASDTGDLS--------GAVKSNT--APRARSASLSTMVLPELRALAK 48 MT+TDL +A S++GD S GAV ++T A R A LS MVL ELR LA Sbjct: 1 MTDTDLIATSAPAGSESGDNSQASSSASNGAVATSTKRAETRRGAGLSGMVLTELRTLAG 60 Query: 49 EIGVEGASGLRKSELIAAIRAHRGESNGRTAEASSPATAD 88 E+G++G SG+RK +LIAAI+ +G S + A A S T D Sbjct: 61 ELGIKGTSGMRKGDLIAAIKERQGGS-AKAAPAQSELTLD 99 >tr|D5PVH9|D5PVH9_COREQ Tax_Id=525370 (rho)SubName: Full=Transcription termination factor Rho;[Rhodococcus equi ATCC 33707] Length = 689 Score = 669 bits (1726), Expect = 0.0 Identities = 338/388 (87%), Positives = 368/388 (94%), Gaps = 2/388 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + E+REDDV+QPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMN+VRKNGLRRGDA+TGAV Sbjct: 302 EPEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLVRKNGLRRGDAITGAV 361 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RVPREG+ NQRQKFNPLVRLDTVNGG VE A+KRPEF KLTPLYPN+RLRLET+P Sbjct: 362 RVPREGEQS--NQRQKFNPLVRLDTVNGGEVEAARKRPEFNKLTPLYPNQRLRLETTPNI 419 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDL+MPIGKGQRALIVSPPKAGKTT+LQDIANAI+ NNPEC+LMVVLVDERPEEV Sbjct: 420 LTTRVIDLVMPIGKGQRALIVSPPKAGKTTVLQDIANAISVNNPECYLMVVLVDERPEEV 479 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSV GEVIASTFDRPP+DHT AELAIERAKRLVE G+DVVVLLDSITRLGRAYNN Sbjct: 480 TDMQRSVNGEVIASTFDRPPADHTSVAELAIERAKRLVEAGRDVVVLLDSITRLGRAYNN 539 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 +SPASGRILSGGVDSTALYPPKRFLGAARNIE+GGSLTIIA+A+VETGSTGDTVIFEEFK Sbjct: 540 SSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIASALVETGSTGDTVIFEEFK 599 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVN S TRKDELL+SPDEFAIVHKLRRVLSGLD+HQAI Sbjct: 600 GTGNAELKLDRKIAERRVFPAVDVNLSSTRKDELLMSPDEFAIVHKLRRVLSGLDTHQAI 659 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSM 661 DLL+ +L+K+++N EFL+ VSKTAPGS+ Sbjct: 660 DLLVDRLKKSQSNVEFLMTVSKTAPGSL 687 Score = 64.3 bits (155), Expect = 5e-08 Identities = 40/85 (47%), Positives = 52/85 (61%), Gaps = 3/85 (3%) Query: 13 SDTGDLSGAVKSNT--APRARSASLSTMVLPELRALAKEIGVEGASGLRKSELIAAIRAH 70 SD G GAV ++T A R A LS MVL ELR LA E+G++G SG+RK +LIAAI+ Sbjct: 30 SDAGSREGAVAASTKRADARRGAGLSGMVLAELRTLAGELGIKGTSGMRKGDLIAAIKER 89 Query: 71 RGESNG-RTAEASSPATADAQTGEQ 94 +G A A++PA A A E+ Sbjct: 90 QGGGAAPSAAAAAAPAEAPAPRKER 114 >tr|C3JI49|C3JI49_RHOER Tax_Id=596309 (rho)SubName: Full=Transcription termination factor Rho;[Rhodococcus erythropolis SK121] Length = 718 Score = 669 bits (1726), Expect = 0.0 Identities = 337/389 (86%), Positives = 366/389 (94%), Gaps = 2/389 (0%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 +TE+REDDV+QPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMN++RKNGLRRGDA+TGAV Sbjct: 331 ETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLRRGDAITGAV 390 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 RV R+G+ G +QRQKFNPLVR+DTVNGG VE AKKRPEF KLTPLYPN+RLRLET Sbjct: 391 RVSRDGEQG--SQRQKFNPLVRIDTVNGGDVEAAKKRPEFNKLTPLYPNQRLRLETEQHI 448 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDL+MPIGKGQRALIVSPPKAGKT++LQ IANA+ NNPEC+LMV+LVDERPEEV Sbjct: 449 LTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAVATNNPECYLMVILVDERPEEV 508 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVI+STFDRPP DHT AELAIERAKRLVE GKDVVVLLDSITRLGRAYNN Sbjct: 509 TDMQRSVKGEVISSTFDRPPGDHTAVAELAIERAKRLVEMGKDVVVLLDSITRLGRAYNN 568 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 +SPASGRILSGGVDSTALYPPKRFLGAARNIE+GGSLTIIATAMVETGSTGDTVIFEEFK Sbjct: 569 SSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFK 628 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPS TRKDELLLSPDE A++HKLRRVLSGLDSHQAI Sbjct: 629 GTGNAELKLDRKIAERRVFPAVDVNPSSTRKDELLLSPDEAAVLHKLRRVLSGLDSHQAI 688 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGSMD 662 DLLI +L+K+K N EFL+QVSKTAPG++D Sbjct: 689 DLLIDRLKKSKNNLEFLMQVSKTAPGAID 717 Score = 65.5 bits (158), Expect = 2e-08 Identities = 46/100 (46%), Positives = 60/100 (60%), Gaps = 13/100 (13%) Query: 1 MTETDLF--TADNASDTGDLS--------GAVKSNT--APRARSASLSTMVLPELRALAK 48 MT+TDL +A S++GD S GAV ++T A R A LS MVL ELR LA Sbjct: 1 MTDTDLIATSAPAGSESGDNSQASSSASNGAVATSTKRAETRRGAGLSGMVLTELRTLAG 60 Query: 49 EIGVEGASGLRKSELIAAIRAHRGESNGRTAEASSPATAD 88 E+G++G SG+RK +LIAAI+ +G S + A A S T D Sbjct: 61 ELGIKGTSGMRKGDLIAAIKERQGGS-AKAAPAQSELTLD 99 >tr|C7MX54|C7MX54_SACVD Tax_Id=471857 SubName: Full=Transcription termination factor Rho;[Saccharomonospora viridis] Length = 613 Score = 639 bits (1649), Expect = 0.0 Identities = 326/386 (84%), Positives = 352/386 (91%), Gaps = 4/386 (1%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 +TE+REDDV+ PVAGILDVL+NYAFVRTSGYL GPNDVYVS+++VRK GLRRGDA+TG V Sbjct: 228 ETEIREDDVLLPVAGILDVLENYAFVRTSGYLPGPNDVYVSLSLVRKYGLRRGDAITGVV 287 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 + PREG+ QRQKFNPLVR+D+VNG E AKKRPEF KLTPLYPNERLRLET+P + Sbjct: 288 KQPREGEQ----QRQKFNPLVRVDSVNGLDPEVAKKRPEFHKLTPLYPNERLRLETTPNK 343 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDL+MP+GKGQRALIVSPPKAGKTTI+QDIANAIT NNPECHLMVVLVDERPEEV Sbjct: 344 LTTRVIDLVMPVGKGQRALIVSPPKAGKTTIMQDIANAITTNNPECHLMVVLVDERPEEV 403 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT AEL+IERAKRLVE G DVVVLLDSITRLGRAYN Sbjct: 404 TDMQRSVKGEVIASTFDRPPSDHTSVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNL 463 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 A+PASGRILSGGVDSTAL+PPKRFLGAARNIE GGSLTI ATAMVETGSTGDTVIFEEFK Sbjct: 464 AAPASGRILSGGVDSTALFPPKRFLGAARNIEGGGSLTIFATAMVETGSTGDTVIFEEFK 523 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIAERRVFPAVDVNPSGTRK+ELLLSPDE A+ HKL RVL LDS QAI Sbjct: 524 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKEELLLSPDELAVTHKLHRVLHALDSQQAI 583 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPG 659 DLL+ +LRKTKTN EFL+QVSK PG Sbjct: 584 DLLLDRLRKTKTNAEFLMQVSKNMPG 609 Score = 47.8 bits (112), Expect = 0.005 Identities = 23/50 (46%), Positives = 33/50 (66%) Query: 38 MVLPELRALAKEIGVEGASGLRKSELIAAIRAHRGESNGRTAEASSPATA 87 MV+ ELR LA E+G+ G +G+RK +LIAAIR +G++ A S +A Sbjct: 1 MVIAELRELAAELGITGTTGMRKGDLIAAIRERQGKTKRTRTTAKSSGSA 50 >tr|D5UW57|D5UW57_TSUPA Tax_Id=521096 SubName: Full=Transcription termination factor Rho;[Tsukamurella paurometabola DSM 20162] Length = 653 Score = 634 bits (1635), Expect = e-179 Identities = 322/396 (81%), Positives = 356/396 (89%), Gaps = 12/396 (3%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 + ++ EDDV+QPVAGILDVLDNYAFVRTSGY+AGPNDVYVSMNMVR+NGLRRGDA+ GAV Sbjct: 252 EPQVSEDDVLQPVAGILDVLDNYAFVRTSGYIAGPNDVYVSMNMVRRNGLRRGDAIVGAV 311 Query: 334 RVPREGDS------------GGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYP 381 ++PR+G+S G Q+ RQKFNPLVRLD+VNG V+ AK RPEF KLTPLYP Sbjct: 312 KMPRDGESNDGGNQGGGGGRGNQSNRQKFNPLVRLDSVNGQDVDSAKNRPEFNKLTPLYP 371 Query: 382 NERLRLETSPERLSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHL 441 N+RLRLET+ L+TRVIDLIMPIGKGQRALI +PPKAGKTTI+QDIANAI NNPEC+L Sbjct: 372 NQRLRLETAQNILTTRVIDLIMPIGKGQRALISAPPKAGKTTIMQDIANAIATNNPECYL 431 Query: 442 MVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLL 501 MVVLVDERPEEVTDMQRS KGEVI+STFDRPPSDHT AELAIERAKRLVE GKDVVVLL Sbjct: 432 MVVLVDERPEEVTDMQRSTKGEVISSTFDRPPSDHTSVAELAIERAKRLVEGGKDVVVLL 491 Query: 502 DSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETG 561 DSITRLGRAYNN+SPASGRILSGG+DSTALYPPKRFLGAARNIE+GGSLTIIATAMVETG Sbjct: 492 DSITRLGRAYNNSSPASGRILSGGIDSTALYPPKRFLGAARNIENGGSLTIIATAMVETG 551 Query: 562 STGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLR 621 STGDTVIFEEFKGTGNAELKLDRKI+ERR+FPAVDV+PS TRKDELLL+PDE AIVHKLR Sbjct: 552 STGDTVIFEEFKGTGNAELKLDRKISERRIFPAVDVHPSSTRKDELLLAPDEAAIVHKLR 611 Query: 622 RVLSGLDSHQAIDLLISQLRKTKTNYEFLVQVSKTA 657 R+LSGLDS QAI+LLISQL+KT+ N EFL+ V K + Sbjct: 612 RLLSGLDSQQAIELLISQLKKTQNNIEFLMMVQKNS 647 Score = 63.5 bits (153), Expect = 9e-08 Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 6/86 (6%) Query: 1 MTETDLFTA-DNASDTGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGLR 59 MTETD+ T+ D A+ T + + A R + L+ MVL ELR +A ++G++G SGLR Sbjct: 1 MTETDVTTSPDTAAST-----SASAQRADERRRSGLNGMVLAELRTIAGDLGIKGISGLR 55 Query: 60 KSELIAAIRAHRGESNGRTAEASSPA 85 K +LIAAI A +G T++A PA Sbjct: 56 KGDLIAAITAQQGSGAAPTSKAEKPA 81 >tr|C6WHL1|C6WHL1_ACTMD Tax_Id=446462 SubName: Full=Transcription termination factor Rho;[Actinosynnema mirum] Length = 709 Score = 620 bits (1599), Expect = e-175 Identities = 311/387 (80%), Positives = 351/387 (90%), Gaps = 4/387 (1%) Query: 274 DTELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAV 333 DTE+R+DDV+ PVAGILDVL+NYAFVRTSGYLAGPNDVYVS+++VRK+GLRRGDA+ GAV Sbjct: 324 DTEVRDDDVLLPVAGILDVLENYAFVRTSGYLAGPNDVYVSLSLVRKHGLRRGDAIIGAV 383 Query: 334 RVPREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPER 393 R PR+G+ QRQKFNPLVR+D +NG E+++ RP+F KLTPLYPNERLRLET P Sbjct: 384 RQPRDGEQ----QRQKFNPLVRVDKINGLDPEESRNRPDFTKLTPLYPNERLRLETEPHI 439 Query: 394 LSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEV 453 L+TRVIDL+MPIGKGQRAL+VSPPKAGKT++LQ IANAIT NNPECHLMVVLVDERPEEV Sbjct: 440 LTTRVIDLVMPIGKGQRALVVSPPKAGKTSVLQSIANAITTNNPECHLMVVLVDERPEEV 499 Query: 454 TDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNN 513 TDMQRSVKGEVIASTFDRPPSDHT +ELAIERAKRLVE G DVVVLLDSITRLGRAYN Sbjct: 500 TDMQRSVKGEVIASTFDRPPSDHTTISELAIERAKRLVEMGHDVVVLLDSITRLGRAYNL 559 Query: 514 ASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFK 573 A+PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLT+IATA+VETGS GD+VIFEEFK Sbjct: 560 AAPASGRILSGGVDSTALYPPKRFLGAARNIEGGGSLTVIATALVETGSAGDSVIFEEFK 619 Query: 574 GTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAI 633 GTGNAELKLDRKIA++R FPAVDV+ SGTRK++LLLSPDE A++HKLRRVL LD QAI Sbjct: 620 GTGNAELKLDRKIADKRTFPAVDVDSSGTRKEDLLLSPDELAVMHKLRRVLHALDGQQAI 679 Query: 634 DLLISQLRKTKTNYEFLVQVSKTAPGS 660 DLL+ +LRKT+TN EFL+QV+KT PG+ Sbjct: 680 DLLLDRLRKTRTNIEFLMQVAKTTPGA 706 Score = 62.0 bits (149), Expect = 3e-07 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 8/92 (8%) Query: 1 MTETDLFTADNASDTGDLSGAVKSNT--------APRARSASLSTMVLPELRALAKEIGV 52 M+ TD+ ++D+A+ S + N AP + A LS MVL ELR LA ++G+ Sbjct: 1 MSNTDVLSSDSAAPNAAASSGAEENALSTPTNGGAPARKRAGLSGMVLAELRELAGQLGI 60 Query: 53 EGASGLRKSELIAAIRAHRGESNGRTAEASSP 84 + + LRK +LIAAI+ +G ++GR + A+ P Sbjct: 61 DSTAKLRKGDLIAAIKERQGGTSGRGSAATPP 92 >tr|D3M497|D3M497_9ACTO Tax_Id=656024 SubName: Full=Transcription termination factor Rho;[Frankia symbiont of Datisca glomerata] Length = 788 Score = 610 bits (1572), Expect = e-172 Identities = 306/383 (79%), Positives = 346/383 (90%), Gaps = 4/383 (1%) Query: 277 LREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAVRVP 336 +REDDV+ PVAGILDVLDNYAFVRTSGYL GP DVYVS+ VR++GLRRGDA+TG VR P Sbjct: 408 VREDDVLVPVAGILDVLDNYAFVRTSGYLTGPTDVYVSLAQVRRHGLRRGDAITGVVRAP 467 Query: 337 REGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPERLST 396 +EG+ +R K+N LVRLDTVNG E+A+ RPEF KLTPLYP ERLRLET P+ L+T Sbjct: 468 QEGEQ----RRDKYNALVRLDTVNGLEPEEARSRPEFTKLTPLYPQERLRLETEPQLLTT 523 Query: 397 RVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDM 456 RVIDL+MP+GKGQRALIVSPPKAGKT +LQ IANAIT NNPECHLMVVLVDERPEEVTDM Sbjct: 524 RVIDLVMPLGKGQRALIVSPPKAGKTMVLQAIANAITTNNPECHLMVVLVDERPEEVTDM 583 Query: 457 QRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASP 516 QRSVKGEVIASTFDRPPSDHT AEL+IERAKRLVE G+DVVVLLDSITRLGRAYN A+P Sbjct: 584 QRSVKGEVIASTFDRPPSDHTSVAELSIERAKRLVELGEDVVVLLDSITRLGRAYNLAAP 643 Query: 517 ASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFKGTG 576 ASGRILSGGVDSTALYPPKRFLGAARNIE+GGSLTIIATA+VETGST DTVIFEEFKGTG Sbjct: 644 ASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATALVETGSTMDTVIFEEFKGTG 703 Query: 577 NAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLL 636 NAELKLDRKIA++RVFPA+DVNPSGTR++E+LL+PDE I+HKLRRVL L+S QA+DLL Sbjct: 704 NAELKLDRKIADKRVFPAIDVNPSGTRREEILLAPDELVIMHKLRRVLHTLESQQALDLL 763 Query: 637 ISQLRKTKTNYEFLVQVSKTAPG 659 + +L++T+TNYEFL+Q++KT PG Sbjct: 764 LDRLKQTRTNYEFLMQIAKTTPG 786 Score = 49.3 bits (116), Expect = 0.002 Identities = 27/80 (33%), Positives = 44/80 (55%) Query: 10 DNASDTGDLSGAVKSNTAPRARSASLSTMVLPELRALAKEIGVEGASGLRKSELIAAIRA 69 ++A S +T R LS M+LPEL+A+A +G++G LRK +LIAAI+ Sbjct: 40 ESAGSQTPTSSVDTGSTRRRRSGTGLSAMLLPELQAMAASLGIQGVGRLRKGQLIAAIQN 99 Query: 70 HRGESNGRTAEASSPATADA 89 + ++ EAS+ ++ A Sbjct: 100 VQAPNSAAGGEASAVTSSAA 119 >tr|C4LJM6|C4LJM6_CORK4 Tax_Id=645127 SubName: Full=Transcription termination factor;[Corynebacterium kroppenstedtii] Length = 673 Score = 609 bits (1571), Expect = e-172 Identities = 314/397 (79%), Positives = 348/397 (87%), Gaps = 5/397 (1%) Query: 273 NDTELREDDVVQPVAGILDVLDNY-AFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTG 331 N +LRE + QP+AGILDV+DN AF+RTSGY +GPNDVYVSMNMVR G+RRGDAVTG Sbjct: 274 NPNQLREGETFQPIAGILDVVDNNTAFIRTSGYQSGPNDVYVSMNMVRSQGMRRGDAVTG 333 Query: 332 AVRVPREGDSGGQN----QRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRL 387 ++V +G S Q+ RQKF PL R+DTVNG + E+AK RPEF KLTPLYPN+RLRL Sbjct: 334 QIKVREDGSSRPQHGRGRNRQKFAPLARVDTVNGMTPEEAKARPEFAKLTPLYPNQRLRL 393 Query: 388 ETSPERLSTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVD 447 ET ++L+TRVIDLIMPIGKGQRALIVSPPKAGKTTILQD+ANAIT NN EC+LMVVLVD Sbjct: 394 ETDQKKLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDVANAITTNNQECYLMVVLVD 453 Query: 448 ERPEEVTDMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRL 507 ERPEEVTDMQRSV GEVIASTFDRPPS+HT AELAIERAKRLVE G+DVVVLLDSITRL Sbjct: 454 ERPEEVTDMQRSVNGEVIASTFDRPPSEHTTVAELAIERAKRLVEAGQDVVVLLDSITRL 513 Query: 508 GRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTV 567 GRAYNN+SPASGRILSGGVDS ALYPPKRFLGAARNIE+GGSLTIIATAMVETGS GDTV Sbjct: 514 GRAYNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTV 573 Query: 568 IFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGL 627 IFEEFKGTGNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLL+PDE ++HKLRR+LS L Sbjct: 574 IFEEFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLAPDEARVMHKLRRILSAL 633 Query: 628 DSHQAIDLLISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 D QAIDLLI QLRKTK N EFL+Q++ +AP S+ D Sbjct: 634 DPQQAIDLLIKQLRKTKNNGEFLMQIASSAPMSVPDD 670 Score = 44.7 bits (104), Expect = 0.045 Identities = 21/36 (58%), Positives = 29/36 (80%) Query: 34 SLSTMVLPELRALAKEIGVEGASGLRKSELIAAIRA 69 +L+ M +PEL+ALA E G+ G SGLRK ++IAAI+A Sbjct: 8 NLAAMRIPELKALAAEKGIRGLSGLRKGDIIAAIQA 43 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.313 0.130 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 4,026,884,619 Number of extensions: 161464196 Number of successful extensions: 446409 Number of sequences better than 10.0: 17187 Number of HSP's gapped: 432623 Number of HSP's successfully gapped: 17391 Length of query: 664 Length of database: 4,236,830,644 Length adjustment: 145 Effective length of query: 519 Effective length of database: 2,423,190,364 Effective search space: 1257635798916 Effective search space used: 1257635798916 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 84 (37.0 bits)