BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_5042 (581 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|A0R2A4|A0R2A4_MYCS2 Tax_Id=246196 SubName: Full=ATP-dependent... 1019 0.0 tr|D5PG99|D5PG99_9MYCO Tax_Id=525368 (deaD2)SubName: Full=ATP-de... 807 0.0 tr|Q1B4W2|Q1B4W2_MYCSS Tax_Id=164756 SubName: Full=DEAD/DEAH box... 806 0.0 tr|A3Q3M9|A3Q3M9_MYCSJ Tax_Id=164757 SubName: Full=DEAD/DEAH box... 806 0.0 tr|A1UK75|A1UK75_MYCSK Tax_Id=189918 SubName: Full=DEAD/DEAH box... 806 0.0 tr|B1MLR2|B1MLR2_MYCA9 Tax_Id=561007 SubName: Full=Probable cold... 802 0.0 tr|A0QCK5|A0QCK5_MYCA1 Tax_Id=243243 SubName: Full=ATP-dependent... 801 0.0 tr|Q73WY9|Q73WY9_MYCPA Tax_Id=1770 (deaD)SubName: Full=DeaD;[Myc... 798 0.0 tr|A1TDJ5|A1TDJ5_MYCVP Tax_Id=350058 SubName: Full=DEAD/DEAH box... 796 0.0 tr|B2HRG6|B2HRG6_MYCMM Tax_Id=216594 (deaD)SubName: Full=Cold-sh... 788 0.0 tr|A4T8U3|A4T8U3_MYCGI Tax_Id=350054 SubName: Full=DEAD/DEAH box... 786 0.0 tr|Q7U0A2|Q7U0A2_MYCBO Tax_Id=1765 (deaD)SubName: Full=PROBABLE ... 755 0.0 tr|C1AMP7|C1AMP7_MYCBT Tax_Id=561275 (deaD)SubName: Full=Putativ... 755 0.0 tr|A1KI41|A1KI41_MYCBP Tax_Id=410289 (deaD)SubName: Full=Probabl... 755 0.0 tr|D6FG95|D6FG95_MYCTU Tax_Id=611303 SubName: Full=Cold shock de... 755 0.0 tr|D5YE96|D5YE96_MYCTU Tax_Id=520140 SubName: Full=Cold-shock DE... 755 0.0 sp|Q11039|DEAD_MYCTU Tax_Id=1773 (deaD)RecName: Full=Cold-shock ... 754 0.0 tr|C6DUB8|C6DUB8_MYCTK Tax_Id=478434 SubName: Full=Cold shock de... 754 0.0 tr|A5WLT3|A5WLT3_MYCTF Tax_Id=336982 SubName: Full=Cold-shock de... 754 0.0 tr|A5U1V1|A5U1V1_MYCTA Tax_Id=419947 (deaD)SubName: Full=ATP-dep... 754 0.0 tr|D6FZK0|D6FZK0_MYCTU Tax_Id=478435 SubName: Full=Cold shock de... 754 0.0 tr|D5Z2G2|D5Z2G2_MYCTU Tax_Id=537209 SubName: Full=Cold-shock de... 754 0.0 tr|D5YQN2|D5YQN2_MYCTU Tax_Id=515616 SubName: Full=ATP-dependent... 754 0.0 tr|D5Y2P3|D5Y2P3_MYCTU Tax_Id=520141 SubName: Full=Cold-shock DE... 754 0.0 tr|A2VHE8|A2VHE8_MYCTU Tax_Id=348776 SubName: Full=Cold-shock de... 754 0.0 tr|D6FR94|D6FR94_MYCTU Tax_Id=611304 SubName: Full=Cold shock de... 753 0.0 tr|D6F3K7|D6F3K7_MYCTU Tax_Id=611302 SubName: Full=Cold shock de... 753 0.0 tr|D5ZF11|D5ZF11_MYCTU Tax_Id=537210 SubName: Full=Cold shock de... 753 0.0 tr|D5XSM2|D5XSM2_MYCTU Tax_Id=515617 SubName: Full=Cold shock de... 753 0.0 tr|C1AZS3|C1AZS3_RHOOB Tax_Id=632772 (deaD)SubName: Full=ATP-dep... 744 0.0 tr|Q0S3S1|Q0S3S1_RHOSR Tax_Id=101510 SubName: Full=Probable cold... 744 0.0 tr|D5PW93|D5PW93_COREQ Tax_Id=525370 (deaD2)SubName: Full=ATP-de... 734 0.0 tr|C1A2G7|C1A2G7_RHOE4 Tax_Id=234621 (deaD)SubName: Full=Probabl... 721 0.0 tr|C3JTM9|C3JTM9_RHOER Tax_Id=596309 SubName: Full=Cold-shock DE... 721 0.0 tr|Q5YQK7|Q5YQK7_NOCFA Tax_Id=37329 (deaD)SubName: Full=Putative... 707 0.0 tr|D5UWR2|D5UWR2_TSUPA Tax_Id=521096 SubName: Full=DEAD/DEAH box... 696 0.0 tr|D0L9Q4|D0L9Q4_GORB4 Tax_Id=526226 SubName: Full=DEAD/DEAH box... 689 0.0 tr|D1VF44|D1VF44_9ACTO Tax_Id=298654 SubName: Full=DEAD/DEAH box... 640 0.0 tr|C4LJP9|C4LJP9_CORK4 Tax_Id=645127 SubName: Full=ATP-dependent... 636 e-180 tr|A1SQL1|A1SQL1_NOCSJ Tax_Id=196162 SubName: Full=DEAD/DEAH box... 635 e-180 tr|Q8FQ74|Q8FQ74_COREF Tax_Id=152794 SubName: Full=Putative cold... 628 e-178 tr|C8NKV2|C8NKV2_COREF Tax_Id=196164 (deaD)SubName: Full=ATP-dep... 628 e-178 tr|A4AJZ0|A4AJZ0_9ACTN Tax_Id=312284 SubName: Full=ATP-dependent... 624 e-177 tr|Q6NHW2|Q6NHW2_CORDI Tax_Id=1717 (deaD)SubName: Full=DEAD-box ... 622 e-176 tr|A4FMF6|A4FMF6_SACEN Tax_Id=405948 (deaD)SubName: Full=ATP-dep... 619 e-175 >tr|A0R2A4|A0R2A4_MYCS2 Tax_Id=246196 SubName: Full=ATP-dependent rna helicase, dead/deah box family protein;[Mycobacterium smegmatis] Length = 581 Score = 1019 bits (2636), Expect = 0.0 Identities = 535/581 (92%), Positives = 535/581 (92%) Query: 1 MTSQEPDPSPVTNSDSAPTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSD 60 MTSQEPDPSPVTNSDSAPTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSD Sbjct: 1 MTSQEPDPSPVTNSDSAPTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSD 60 Query: 61 VVGLAQTGTGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVN 120 VVGLAQTGTGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVN Sbjct: 61 VVGLAQTGTGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVN 120 Query: 121 VLPIYGGSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMG 180 VLPIYGGSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMG Sbjct: 121 VLPIYGGSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMG 180 Query: 181 FAEEVERILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFI 240 FAEEVERILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFI Sbjct: 181 FAEEVERILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFI 240 Query: 241 QVAGPRKMDALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRE 300 QVAGPRKMDALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRE Sbjct: 241 QVAGPRKMDALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRE 300 Query: 301 RTISALKDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHA 360 RTISALKDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHA Sbjct: 301 RTISALKDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHA 360 Query: 361 VLFVTPRERHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRR 420 VLFVTPRERHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRR Sbjct: 361 VLFVTPRERHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRR 420 Query: 421 LIEDYERESNVPLADIAAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXX 480 LIEDYERESNVPLADIAAALAVQTRNGEEFLMT Sbjct: 421 LIEDYERESNVPLADIAAALAVQTRNGEEFLMTEPPPDKRRDRDRDRDDRGDRGPRKERP 480 Query: 481 XXXXLATYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXX 540 LATYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLV Sbjct: 481 PREGLATYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVELPEKLPKKT 540 Query: 541 XXXXXNTRISGVLINLQPDRGPRREGAGKPSGKYKPHRKVK 581 NTRISGVLINLQPDRGPRREGAGKPSGKYKPHRKVK Sbjct: 541 LKALENTRISGVLINLQPDRGPRREGAGKPSGKYKPHRKVK 581 >tr|D5PG99|D5PG99_9MYCO Tax_Id=525368 (deaD2)SubName: Full=ATP-dependent RNA helicase DeaD;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 566 Score = 807 bits (2085), Expect = 0.0 Identities = 426/569 (74%), Positives = 475/569 (83%), Gaps = 10/569 (1%) Query: 11 VTNSDSAP--TEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTG 68 +T DS+P TFADLQIHP+VL+A+ DVGYESP+ IQAATIP ++AGSDVVGLAQTG Sbjct: 1 MTLPDSSPEAASTTFADLQIHPSVLRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTG 60 Query: 69 TGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGS 128 TGKTAAFAIPILSKID + + TQALVLAPTRELALQVAEAF RYG+HLP+VNVLPIYGGS Sbjct: 61 TGKTAAFAIPILSKIDVASKATQALVLAPTRELALQVAEAFSRYGAHLPKVNVLPIYGGS 120 Query: 129 SYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERI 188 SYTVQL+GLRRGAQVVVGTPGRVIDHLERGTLDLS +DYLVLDEADEMLTMGFAEEV+RI Sbjct: 121 SYTVQLAGLRRGAQVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRI 180 Query: 189 LADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKM 248 L++TPEYKQVALFSATMP AIRK+TTKYLHDP+EV+ KAKTATAENISQR+IQVAGPRKM Sbjct: 181 LSETPEYKQVALFSATMPPAIRKLTTKYLHDPLEVSTKAKTATAENISQRYIQVAGPRKM 240 Query: 249 DALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKD 308 DALTR+LEVE +AMIVFVRTKQATEEVA+RL+ARGF+AAAINGDI Q QRERT++ALKD Sbjct: 241 DALTRVLEVEPFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKD 300 Query: 309 GTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRE 368 G IDIL+ATDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A+LFV+PRE Sbjct: 301 GGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRE 360 Query: 369 RHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERE 428 RHLL++IEKATR LIEAELP+VEDVNAQRVAKF DSI+ +L PGI+LFR+L+EDYERE Sbjct: 361 RHLLRAIEKATRQTLIEAELPTVEDVNAQRVAKFADSITAALGRPGIELFRKLVEDYERE 420 Query: 429 SNVPLADIAAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATY 488 +VPLADIAAALA+Q+R+GEEFLM TY Sbjct: 421 HDVPLADIAAALALQSRDGEEFLMA-----PEPPRERRERHDDHRERAEKPRQSRPFTTY 475 Query: 489 RIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTR 548 RI VGKRHKVGPG IVGAIANEGGLHR++FGHI I D+SLV TR Sbjct: 476 RIAVGKRHKVGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPAKLSPSTLKKLERTR 535 Query: 549 ISGVLINLQPDRG---PRREGAGKPSGKY 574 ISGVLINLQPDR PR +GKP K+ Sbjct: 536 ISGVLINLQPDRSASKPRGRDSGKPRRKH 564 >tr|Q1B4W2|Q1B4W2_MYCSS Tax_Id=164756 SubName: Full=DEAD/DEAH box helicase-like protein;[Mycobacterium sp.] Length = 557 Score = 806 bits (2083), Expect = 0.0 Identities = 430/570 (75%), Positives = 473/570 (82%), Gaps = 14/570 (2%) Query: 1 MTSQEPDPSPVTNSDSAP-TEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGS 59 MTS EPD AP TE TFADLQIHP VL+AVTDVGYE+PSAIQAATIP MLAGS Sbjct: 1 MTSPEPD---------APGTETTFADLQIHPEVLRAVTDVGYETPSAIQAATIPAMLAGS 51 Query: 60 DVVGLAQTGTGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQV 119 DVVGLAQTGTGKTAAFAIPILSKID + R TQALVLAPTRELALQVAEAFGRYG+HLP V Sbjct: 52 DVVGLAQTGTGKTAAFAIPILSKIDPNSRATQALVLAPTRELALQVAEAFGRYGAHLP-V 110 Query: 120 NVLPIYGGSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTM 179 NVLP+YGGSSY Q++GL+RGAQVVVGTPGRVIDHLE+G+LDLS LDY+VLDEADEML M Sbjct: 111 NVLPVYGGSSYGPQMAGLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYMVLDEADEMLQM 170 Query: 180 GFAEEVERILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRF 239 GFAE+VERIL+DTPEYKQVALFSATMP I+KIT KYLHDPVEVTVK+KT TAENI+QR+ Sbjct: 171 GFAEDVERILSDTPEYKQVALFSATMPPGIKKITKKYLHDPVEVTVKSKTQTAENITQRY 230 Query: 240 IQVAGPRKMDALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQR 299 IQV+ PRKMDALTR+LE E+GD MIVFVRTKQATEEVA++L+ARGFAAAAINGDI QA R Sbjct: 231 IQVSYPRKMDALTRLLETEQGDGMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVR 290 Query: 300 ERTISALKDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGH 359 ERTIS LKDG+IDIL+ATDVAARGLDVERISHV+N+DIPHD ESYVHRIGRTGRAGRSG Sbjct: 291 ERTISQLKDGSIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGT 350 Query: 360 AVLFVTPRERHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFR 419 A+LFVTPRERHLL SIE+ TR KL+E +LPSVEDVNAQRV KFRDSI ++LNAPGIDLFR Sbjct: 351 ALLFVTPRERHLLNSIERVTRQKLVEIQLPSVEDVNAQRVEKFRDSIGEALNAPGIDLFR 410 Query: 420 RLIEDYERESNVPLADIAAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXX 479 RLIEDYER++NVPLADIAAALAVQ+RNGEEFLMT Sbjct: 411 RLIEDYERDNNVPLADIAAALAVQSRNGEEFLMT---EPPPEKRRERPVRDESGPRKARD 467 Query: 480 XXXXXLATYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXX 539 LATYRI VGKRHKV PG IVGAIANEGGL+R++FGHI I+ +YSLV Sbjct: 468 RTRSDLATYRIAVGKRHKVMPGAIVGAIANEGGLNRSDFGHIAIKPEYSLVELPADLPKD 527 Query: 540 XXXXXXNTRISGVLINLQPDRGPRREGAGK 569 TRI GVLINL+PDRGP+ GK Sbjct: 528 TLKKLERTRIQGVLINLEPDRGPKARYKGK 557 >tr|A3Q3M9|A3Q3M9_MYCSJ Tax_Id=164757 SubName: Full=DEAD/DEAH box helicase domain protein;[Mycobacterium sp.] Length = 557 Score = 806 bits (2083), Expect = 0.0 Identities = 430/570 (75%), Positives = 473/570 (82%), Gaps = 14/570 (2%) Query: 1 MTSQEPDPSPVTNSDSAP-TEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGS 59 MTS EPD AP TE TFADLQIHP VL+AVTDVGYE+PSAIQAATIP MLAGS Sbjct: 1 MTSPEPD---------APGTETTFADLQIHPEVLRAVTDVGYETPSAIQAATIPAMLAGS 51 Query: 60 DVVGLAQTGTGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQV 119 DVVGLAQTGTGKTAAFAIPILSKID + R TQALVLAPTRELALQVAEAFGRYG+HLP V Sbjct: 52 DVVGLAQTGTGKTAAFAIPILSKIDPNSRATQALVLAPTRELALQVAEAFGRYGAHLP-V 110 Query: 120 NVLPIYGGSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTM 179 NVLP+YGGSSY Q++GL+RGAQVVVGTPGRVIDHLE+G+LDLS LDY+VLDEADEML M Sbjct: 111 NVLPVYGGSSYGPQMAGLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYMVLDEADEMLQM 170 Query: 180 GFAEEVERILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRF 239 GFAE+VERIL+DTPEYKQVALFSATMP I+KIT KYLHDPVEVTVK+KT TAENI+QR+ Sbjct: 171 GFAEDVERILSDTPEYKQVALFSATMPPGIKKITKKYLHDPVEVTVKSKTQTAENITQRY 230 Query: 240 IQVAGPRKMDALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQR 299 IQV+ PRKMDALTR+LE E+GD MIVFVRTKQATEEVA++L+ARGFAAAAINGDI QA R Sbjct: 231 IQVSYPRKMDALTRLLETEQGDGMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVR 290 Query: 300 ERTISALKDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGH 359 ERTIS LKDG+IDIL+ATDVAARGLDVERISHV+N+DIPHD ESYVHRIGRTGRAGRSG Sbjct: 291 ERTISQLKDGSIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGT 350 Query: 360 AVLFVTPRERHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFR 419 A+LFVTPRERHLL SIE+ TR KL+E +LPSVEDVNAQRV KFRDSI ++LNAPGIDLFR Sbjct: 351 ALLFVTPRERHLLNSIERVTRQKLVEIQLPSVEDVNAQRVEKFRDSIGEALNAPGIDLFR 410 Query: 420 RLIEDYERESNVPLADIAAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXX 479 RLIEDYER++NVPLADIAAALAVQ+RNGEEFLMT Sbjct: 411 RLIEDYERDNNVPLADIAAALAVQSRNGEEFLMT---EPPPEKRRERPVRDESGPRKARD 467 Query: 480 XXXXXLATYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXX 539 LATYRI VGKRHKV PG IVGAIANEGGL+R++FGHI I+ +YSLV Sbjct: 468 RTRSDLATYRIAVGKRHKVMPGAIVGAIANEGGLNRSDFGHIAIKPEYSLVELPADLPKD 527 Query: 540 XXXXXXNTRISGVLINLQPDRGPRREGAGK 569 TRI GVLINL+PDRGP+ GK Sbjct: 528 TLKKLERTRIQGVLINLEPDRGPKARYKGK 557 >tr|A1UK75|A1UK75_MYCSK Tax_Id=189918 SubName: Full=DEAD/DEAH box helicase domain protein;[Mycobacterium sp.] Length = 557 Score = 806 bits (2083), Expect = 0.0 Identities = 430/570 (75%), Positives = 473/570 (82%), Gaps = 14/570 (2%) Query: 1 MTSQEPDPSPVTNSDSAP-TEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGS 59 MTS EPD AP TE TFADLQIHP VL+AVTDVGYE+PSAIQAATIP MLAGS Sbjct: 1 MTSPEPD---------APGTETTFADLQIHPEVLRAVTDVGYETPSAIQAATIPAMLAGS 51 Query: 60 DVVGLAQTGTGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQV 119 DVVGLAQTGTGKTAAFAIPILSKID + R TQALVLAPTRELALQVAEAFGRYG+HLP V Sbjct: 52 DVVGLAQTGTGKTAAFAIPILSKIDPNSRATQALVLAPTRELALQVAEAFGRYGAHLP-V 110 Query: 120 NVLPIYGGSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTM 179 NVLP+YGGSSY Q++GL+RGAQVVVGTPGRVIDHLE+G+LDLS LDY+VLDEADEML M Sbjct: 111 NVLPVYGGSSYGPQMAGLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYMVLDEADEMLQM 170 Query: 180 GFAEEVERILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRF 239 GFAE+VERIL+DTPEYKQVALFSATMP I+KIT KYLHDPVEVTVK+KT TAENI+QR+ Sbjct: 171 GFAEDVERILSDTPEYKQVALFSATMPPGIKKITKKYLHDPVEVTVKSKTQTAENITQRY 230 Query: 240 IQVAGPRKMDALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQR 299 IQV+ PRKMDALTR+LE E+GD MIVFVRTKQATEEVA++L+ARGFAAAAINGDI QA R Sbjct: 231 IQVSYPRKMDALTRLLETEQGDGMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVR 290 Query: 300 ERTISALKDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGH 359 ERTIS LKDG+IDIL+ATDVAARGLDVERISHV+N+DIPHD ESYVHRIGRTGRAGRSG Sbjct: 291 ERTISQLKDGSIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGT 350 Query: 360 AVLFVTPRERHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFR 419 A+LFVTPRERHLL SIE+ TR KL+E +LPSVEDVNAQRV KFRDSI ++LNAPGIDLFR Sbjct: 351 ALLFVTPRERHLLNSIERVTRQKLVEIQLPSVEDVNAQRVEKFRDSIGEALNAPGIDLFR 410 Query: 420 RLIEDYERESNVPLADIAAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXX 479 RLIEDYER++NVPLADIAAALAVQ+RNGEEFLMT Sbjct: 411 RLIEDYERDNNVPLADIAAALAVQSRNGEEFLMT---EPPPEKRRERPVRDESGPRKARD 467 Query: 480 XXXXXLATYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXX 539 LATYRI VGKRHKV PG IVGAIANEGGL+R++FGHI I+ +YSLV Sbjct: 468 RTRSDLATYRIAVGKRHKVMPGAIVGAIANEGGLNRSDFGHIAIKPEYSLVELPADLPKD 527 Query: 540 XXXXXXNTRISGVLINLQPDRGPRREGAGK 569 TRI GVLINL+PDRGP+ GK Sbjct: 528 TLKKLERTRIQGVLINLEPDRGPKARYKGK 557 >tr|B1MLR2|B1MLR2_MYCA9 Tax_Id=561007 SubName: Full=Probable cold-shock DEAD box protein A homolog (ATP-dependent RNA helicase DEAD homolog);[Mycobacterium abscessus] Length = 598 Score = 802 bits (2071), Expect = 0.0 Identities = 427/575 (74%), Positives = 477/575 (82%), Gaps = 9/575 (1%) Query: 8 PSPVTNSDSAPTEP---TFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGL 64 P+P T SAP TFADL I P VL+AV+DVGYE+PSAIQAATIPP+LAGSDVVGL Sbjct: 7 PTPDTGDSSAPPADDTVTFADLHIAPEVLRAVSDVGYETPSAIQAATIPPLLAGSDVVGL 66 Query: 65 AQTGTGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPI 124 AQTGTGKTAAFAIPILSKID + +DTQALVLAPTRELALQVAEAFGRYG+H+P++NVLPI Sbjct: 67 AQTGTGKTAAFAIPILSKIDLTSKDTQALVLAPTRELALQVAEAFGRYGAHMPKLNVLPI 126 Query: 125 YGGSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEE 184 YGG SY VQL+GL+RGAQVVVGTPGRVIDHLERGTLDLS LDYLVLDEADEMLTMGFAE+ Sbjct: 127 YGGQSYVVQLAGLKRGAQVVVGTPGRVIDHLERGTLDLSHLDYLVLDEADEMLTMGFAED 186 Query: 185 VERILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAG 244 VERILADTPEYKQVALFSATMP IR++T KYLHDPVE+ + AKT+TAENI+QRFIQVAG Sbjct: 187 VERILADTPEYKQVALFSATMPTTIRRLTKKYLHDPVEIKIDAKTSTAENITQRFIQVAG 246 Query: 245 PRKMDALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTIS 304 PRKMDALTRILEVE +AMIVFVRTKQATEEVAD+LKARGFAAAAINGDINQ+QRERTI+ Sbjct: 247 PRKMDALTRILEVETFEAMIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQRERTIN 306 Query: 305 ALKDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFV 364 ALK GTIDIL+ATDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG AVLFV Sbjct: 307 ALKAGTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTAVLFV 366 Query: 365 TPRERHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIED 424 +PRERHLLK+IEK T +KL E LPSVEDVNAQRV KFRD+I+ +L AP ++LFRRL+ED Sbjct: 367 SPRERHLLKAIEKTTGAKLAEEPLPSVEDVNAQRVTKFRDAITAALAAPEVELFRRLVED 426 Query: 425 YERESNVPLADIAAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 484 YER++NVP+ADIAAALAV +R+GE+FL+ Sbjct: 427 YERDNNVPVADIAAALAVLSRDGEQFLL---QPDPPREPRHERGERPDRGPRGERPRTPG 483 Query: 485 LATYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXX 544 LATYRI VGKRHKV PG IVGAIANEGGLHR++FGHITIR D+SLV Sbjct: 484 LATYRIAVGKRHKVMPGAIVGAIANEGGLHRSDFGHITIRPDHSLVELPAKLSPKTLKAL 543 Query: 545 XNTRISGVLINLQPDRGPRREGAGKPSGKYKPHRK 579 NTRISGVLI+L+P GP +GA +P KY R+ Sbjct: 544 ENTRISGVLIDLRPAGGP--DGA-RPDRKYTERRR 575 >tr|A0QCK5|A0QCK5_MYCA1 Tax_Id=243243 SubName: Full=ATP-dependent rna helicase, dead/deah box family protein;[Mycobacterium avium] Length = 566 Score = 801 bits (2069), Expect = 0.0 Identities = 419/565 (74%), Positives = 468/565 (82%), Gaps = 8/565 (1%) Query: 13 NSDSAPTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKT 72 +S + PTFADLQIHP+VL+A+ DVGYE+P+ IQAATIP ++AGSDVVGLAQTGTGKT Sbjct: 5 DSSTEAASPTFADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKT 64 Query: 73 AAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTV 132 AAFAIPILSKID + TQALVLAPTRELALQVAEAF RYG+HLP++NVLPIYGGSSY V Sbjct: 65 AAFAIPILSKIDVASTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAV 124 Query: 133 QLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADT 192 QL+GL+RGA VVVGTPGRVIDHLERGTLDLS +DYLVLDEADEMLTMGFAEEV+RIL++T Sbjct: 125 QLAGLKRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSET 184 Query: 193 PEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALT 252 PEYKQVALFSATMP AIRK+T KYLHDP+EV+ KAKT TAENISQR+IQVAGPRKMDALT Sbjct: 185 PEYKQVALFSATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALT 244 Query: 253 RILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTID 312 R+LEVE +AMIVFVRTKQATEEVA+RL+ARGF+AAAINGDI Q QRERT++ALKDG ID Sbjct: 245 RVLEVEPFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGID 304 Query: 313 ILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLL 372 IL+ATDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A+LFV+PRERHLL Sbjct: 305 ILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLL 364 Query: 373 KSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVP 432 K+IEKATR L EAELP+VEDVNAQRVAKF DSI+ +L APGIDLFR+L++DYERE +VP Sbjct: 365 KAIEKATRQPLTEAELPTVEDVNAQRVAKFADSITAALGAPGIDLFRKLVQDYEREHDVP 424 Query: 433 LADIAAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDV 492 +ADIAAALAVQ+R+GEEFLM LATYRI V Sbjct: 425 MADIAAALAVQSRDGEEFLMA-----PEPPRERRERHTERRERTEKPRSTRPLATYRIAV 479 Query: 493 GKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGV 552 GKRHK+GPG IVGAIANEGGLHR++FGHI I D+SLV TRISGV Sbjct: 480 GKRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPDFSLVELPAKLPKSTLKRLEQTRISGV 539 Query: 553 LINLQPDRG---PRREGAGKPSGKY 574 LINLQPDR R GKP KY Sbjct: 540 LINLQPDRAAAKARGRDGGKPRRKY 564 >tr|Q73WY9|Q73WY9_MYCPA Tax_Id=1770 (deaD)SubName: Full=DeaD;[Mycobacterium paratuberculosis] Length = 566 Score = 798 bits (2062), Expect = 0.0 Identities = 418/565 (73%), Positives = 467/565 (82%), Gaps = 8/565 (1%) Query: 13 NSDSAPTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKT 72 +S + PTFADLQIHP+VL+A+ DVGYE+P+ IQAATIP ++AGSDVVGLAQTGTGKT Sbjct: 5 DSSTEAASPTFADLQIHPSVLRAIADVGYETPTGIQAATIPALMAGSDVVGLAQTGTGKT 64 Query: 73 AAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTV 132 AAFAIPILSKID + TQALVLAPTRELALQVAEAF RYG+HLP++NVLPIYGGSSY V Sbjct: 65 AAFAIPILSKIDAASTATQALVLAPTRELALQVAEAFSRYGAHLPKINVLPIYGGSSYAV 124 Query: 133 QLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADT 192 QL+GL+RGA VVVGTPGRVIDHLERGTLDLS +DYLVLDEADEMLTMGFAEEV+RIL++T Sbjct: 125 QLAGLKRGAHVVVGTPGRVIDHLERGTLDLSHVDYLVLDEADEMLTMGFAEEVDRILSET 184 Query: 193 PEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALT 252 PEYKQVALFSATMP AIRK+T KYLHDP+EV+ KAKT TAENISQR+IQVAGPRKMDALT Sbjct: 185 PEYKQVALFSATMPPAIRKLTAKYLHDPLEVSTKAKTTTAENISQRYIQVAGPRKMDALT 244 Query: 253 RILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTID 312 R+LEVE +AMIVFVRTKQATEEVA+RL+ARGF+AAAINGDI Q QRERT++ALKDG ID Sbjct: 245 RVLEVEPFEAMIVFVRTKQATEEVAERLRARGFSAAAINGDIPQGQRERTVAALKDGGID 304 Query: 313 ILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLL 372 IL+ATDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A+LFV+PRERHLL Sbjct: 305 ILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGTALLFVSPRERHLL 364 Query: 373 KSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVP 432 K+IEKATR L EAELP+VEDVNAQRVAKF DSI+ +L APGIDLFR+L++DYERE +VP Sbjct: 365 KAIEKATRQPLTEAELPTVEDVNAQRVAKFADSITAALGAPGIDLFRKLVQDYEREHDVP 424 Query: 433 LADIAAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDV 492 +ADIAAALAVQ+R+GEEFLM LATYRI V Sbjct: 425 MADIAAALAVQSRDGEEFLMA-----PEPPRERRERHTERRERTEKPRSTRPLATYRIAV 479 Query: 493 GKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGV 552 GKRHK+GPG IVGAIANEGGLHR++FGHI I +SLV TRISGV Sbjct: 480 GKRHKIGPGAIVGAIANEGGLHRSDFGHIAIGPGFSLVELPAKLPKSTLKRLEQTRISGV 539 Query: 553 LINLQPDRG---PRREGAGKPSGKY 574 LINLQPDR R GKP KY Sbjct: 540 LINLQPDRAAAKARGRDGGKPRRKY 564 >tr|A1TDJ5|A1TDJ5_MYCVP Tax_Id=350058 SubName: Full=DEAD/DEAH box helicase domain protein;[Mycobacterium vanbaalenii] Length = 564 Score = 796 bits (2057), Expect = 0.0 Identities = 420/563 (74%), Positives = 470/563 (83%), Gaps = 3/563 (0%) Query: 12 TNSDSAPTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGK 71 +N+++ + TFADLQIHPAVLQAV DVGYE+PS IQAATIP +L GSDVVGLAQTGTGK Sbjct: 4 SNAETESADLTFADLQIHPAVLQAVADVGYETPSPIQAATIPAILDGSDVVGLAQTGTGK 63 Query: 72 TAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYT 131 TAAFAIPILSKIDT R+TQALVLAPTRELALQVAEAFGRYG+HL +VNVLPIYGG+SY Sbjct: 64 TAAFAIPILSKIDTDSRNTQALVLAPTRELALQVAEAFGRYGAHL-RVNVLPIYGGASYV 122 Query: 132 VQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILAD 191 QLSGL+RGAQVVVGTPGRVIDHLE+G+LDLS LDYLVLDEADEML MGFAE+VERILAD Sbjct: 123 PQLSGLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILAD 182 Query: 192 TPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDAL 251 TPEYKQVALFSATMP AI+KIT KYLHDPVEVTVK+KT TAENI+QR+ V+ PRKMDAL Sbjct: 183 TPEYKQVALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMDAL 242 Query: 252 TRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTI 311 TR+LEVE+GDAMIVFVRTKQATEEVA++L++RGFAAAAINGDI QA RERTIS LKDGTI Sbjct: 243 TRLLEVEQGDAMIVFVRTKQATEEVAEKLRSRGFAAAAINGDIPQAVRERTISQLKDGTI 302 Query: 312 DILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHL 371 DIL+ATDVAARGLDVERISHV+N+DIPHD ESYVHRIGRTGRAGRSG A+LFVTPRERHL Sbjct: 303 DILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHL 362 Query: 372 LKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNV 431 L +IE+ TR KL+E+ELPSVEDVN +RVAKFRDSI+D+L PGIDLFR LIE YER+ +V Sbjct: 363 LGAIERVTRQKLVESELPSVEDVNEKRVAKFRDSITDALEKPGIDLFRTLIEGYERDHDV 422 Query: 432 PLADIAAALAVQTRNGEEFLMT-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRI 490 P+ADIAAALA+Q+RNGEEFLMT LATYRI Sbjct: 423 PMADIAAALALQSRNGEEFLMTEPPPEKRRERRERDGRDGDDRGPRKPRERRSDLATYRI 482 Query: 491 DVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRIS 550 VGKRHKV PG IVGAIANEGGLHR++FGHITI++DYSLV NTRI Sbjct: 483 AVGKRHKVAPGAIVGAIANEGGLHRSDFGHITIKVDYSLVELPAKLSHKTLKALENTRIQ 542 Query: 551 GVLINLQPDRGPRREGAGKPSGK 573 G LI+L+PDRGP+ G+P K Sbjct: 543 GQLIHLEPDRGPKPH-RGRPQSK 564 >tr|B2HRG6|B2HRG6_MYCMM Tax_Id=216594 (deaD)SubName: Full=Cold-shock DEAD-Box protein, DeaD;[Mycobacterium marinum] Length = 571 Score = 788 bits (2035), Expect = 0.0 Identities = 416/571 (72%), Positives = 470/571 (82%), Gaps = 11/571 (1%) Query: 11 VTNSDSAPTEP--TFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTG 68 + N ++ P P TFADLQIHP+V++A+ DVGYESP+ IQAATIP ++AGSDVVGLAQTG Sbjct: 1 MANPENPPAVPPATFADLQIHPSVMRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTG 60 Query: 69 TGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGS 128 TGKTAAFAIPILSKIDT+ TQALVLAPTRELALQVAEAF RYG+HL ++NVLP+YGGS Sbjct: 61 TGKTAAFAIPILSKIDTTSTATQALVLAPTRELALQVAEAFSRYGAHLSRLNVLPVYGGS 120 Query: 129 SYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERI 188 SY +QL+GLRRGAQVVVGTPGRVIDHLER TLDLS++DYLVLDEADEMLTMGFAE+VERI Sbjct: 121 SYAIQLAGLRRGAQVVVGTPGRVIDHLERRTLDLSRVDYLVLDEADEMLTMGFAEDVERI 180 Query: 189 LADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKM 248 L++TPEYKQVALFSATMP AIRKITT+YLHDP+EV +AKTATAENISQR+IQVAGPRKM Sbjct: 181 LSETPEYKQVALFSATMPPAIRKITTRYLHDPLEVKSEAKTATAENISQRYIQVAGPRKM 240 Query: 249 DALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKD 308 DALTR+LEVE +AMIVFVRTKQATEEVA++L+ARGF+AAAINGDI Q QRERTI+AL+D Sbjct: 241 DALTRVLEVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTITALRD 300 Query: 309 GTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRE 368 G IDIL+ATDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A+LFV+PRE Sbjct: 301 GGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALLFVSPRE 360 Query: 369 RHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERE 428 RHLLK IEKATR L EAELP+VEDVNAQRVAKF DSI+ +L+ GI+LFRRL+EDYERE Sbjct: 361 RHLLKLIEKATRQTLTEAELPTVEDVNAQRVAKFADSITHALSNTGIELFRRLVEDYERE 420 Query: 429 SNVPLADIAAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATY 488 NVP+ADIAAALA+Q+R+GEEFL+ +TY Sbjct: 421 HNVPMADIAAALALQSRDGEEFLLA---PDPPPDQRERHPRNERKERPERRRSGGAFSTY 477 Query: 489 RIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTR 548 RI VGKRHKVGPG IVGAIANEGGLHR++FGHITI D+SLV TR Sbjct: 478 RISVGKRHKVGPGAIVGAIANEGGLHRSDFGHITIGPDFSLVELPVKLPRETLKKLEQTR 537 Query: 549 ISGVLINLQPDR------GPRREGAGKPSGK 573 ISGVLINL+PDR RR GKP K Sbjct: 538 ISGVLINLRPDRPADKAYKARRNDGGKPRRK 568 >tr|A4T8U3|A4T8U3_MYCGI Tax_Id=350054 SubName: Full=DEAD/DEAH box helicase domain protein;[Mycobacterium gilvum] Length = 559 Score = 786 bits (2030), Expect = 0.0 Identities = 414/559 (74%), Positives = 466/559 (83%), Gaps = 6/559 (1%) Query: 12 TNSDSAPTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGK 71 +N++ P + TFADLQIHPAVL+AV DVGYESPS IQAATIP +L GSDVVGLAQTGTGK Sbjct: 4 SNAEPDPADLTFADLQIHPAVLKAVADVGYESPSPIQAATIPAILEGSDVVGLAQTGTGK 63 Query: 72 TAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYT 131 TAAFAIPILSKIDT R+TQALVLAPTRELALQVAEAFGRYG+ L +VNVLPIYGGSSY Sbjct: 64 TAAFAIPILSKIDTDSRNTQALVLAPTRELALQVAEAFGRYGAQL-RVNVLPIYGGSSYV 122 Query: 132 VQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILAD 191 QL+GL+RGAQVVVGTPGRVIDHLE+G+LDLS LDYLVLDEADEML MGFAE+VERILAD Sbjct: 123 PQLAGLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYLVLDEADEMLQMGFAEDVERILAD 182 Query: 192 TPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDAL 251 TPEYKQVALFSATMP AI+KIT KYLHDPVEVTVK+KT TAENI+QR+ V+ PRKMDAL Sbjct: 183 TPEYKQVALFSATMPPAIKKITAKYLHDPVEVTVKSKTQTAENITQRYFLVSYPRKMDAL 242 Query: 252 TRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTI 311 TR+LE E+GDAMIVFVRTKQATEEVA++L+ARGFAA+AINGDI QA RERTI+ LKDGTI Sbjct: 243 TRLLETEQGDAMIVFVRTKQATEEVAEKLRARGFAASAINGDIPQAVRERTIAQLKDGTI 302 Query: 312 DILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHL 371 DIL+ATDVAARGLDVERISHV+N+DIPHD ESYVHRIGRTGRAGRSG A+LFVTPRERHL Sbjct: 303 DILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRERHL 362 Query: 372 LKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNV 431 L +IE+ TR KL+E+ELPSV+DVN +RVAKFRDSI+D+L+ PGIDLFR L+E YER+ +V Sbjct: 363 LGAIERVTRQKLVESELPSVDDVNEKRVAKFRDSITDALDKPGIDLFRTLVEGYERDHDV 422 Query: 432 PLADIAAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRID 491 P+ADIAAALA+Q+RNGEEFLMT LATYRI Sbjct: 423 PMADIAAALALQSRNGEEFLMT----EPPPEKRRERPERGDASPRKPRERRSDLATYRIA 478 Query: 492 VGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISG 551 VGKRHKV PG IVGAIANEGGLHR++FGHITI++D+SLV NT+I G Sbjct: 479 VGKRHKVAPGAIVGAIANEGGLHRSDFGHITIKMDHSLVELPAKLPGKTLKALQNTKIQG 538 Query: 552 VLINLQPDRGPRREGAGKP 570 LI LQPDRG + GKP Sbjct: 539 QLIQLQPDRGAKPH-RGKP 556 >tr|Q7U0A2|Q7U0A2_MYCBO Tax_Id=1765 (deaD)SubName: Full=PROBABLE COLD-SHOCK DEAD-BOX PROTEIN A HOMOLOG DEAD (ATP-dependent RNA helicase deaD homolog);[Mycobacterium bovis] Length = 563 Score = 755 bits (1949), Expect = 0.0 Identities = 399/561 (71%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGRVIDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct: 129 LRRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+E+YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >tr|C1AMP7|C1AMP7_MYCBT Tax_Id=561275 (deaD)SubName: Full=Putative cold-shock dead-box protein a homolog;[Mycobacterium bovis] Length = 563 Score = 755 bits (1949), Expect = 0.0 Identities = 399/561 (71%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGRVIDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct: 129 LRRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+E+YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >tr|A1KI41|A1KI41_MYCBP Tax_Id=410289 (deaD)SubName: Full=Probable cold-shock dead-box protein a homolog deaD;[Mycobacterium bovis] Length = 563 Score = 755 bits (1949), Expect = 0.0 Identities = 399/561 (71%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGRVIDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct: 129 LRRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+E+YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >tr|D6FG95|D6FG95_MYCTU Tax_Id=611303 SubName: Full=Cold shock deaD-box protein A deaD;[Mycobacterium tuberculosis CPHL_A] Length = 563 Score = 755 bits (1949), Expect = 0.0 Identities = 399/561 (71%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGRVIDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct: 129 LRRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+E+YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >tr|D5YE96|D5YE96_MYCTU Tax_Id=520140 SubName: Full=Cold-shock DEAD-box protein A;[Mycobacterium tuberculosis EAS054] Length = 563 Score = 755 bits (1949), Expect = 0.0 Identities = 399/561 (71%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGRVIDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct: 129 LRRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+E+YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >sp|Q11039|DEAD_MYCTU Tax_Id=1773 (deaD)RecName: Full=Cold-shock DEAD box protein A homolog; EC=3.6.4.13; AltName: Full=ATP-dependent RNA helicase deaD homolog;[Mycobacterium tuberculosis] Length = 563 Score = 754 bits (1946), Expect = 0.0 Identities = 398/561 (70%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGR+IDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+E+YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >tr|C6DUB8|C6DUB8_MYCTK Tax_Id=478434 SubName: Full=Cold shock deaD-box protein A deaD;[Mycobacterium tuberculosis] Length = 563 Score = 754 bits (1946), Expect = 0.0 Identities = 398/561 (70%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGR+IDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+E+YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >tr|A5WLT3|A5WLT3_MYCTF Tax_Id=336982 SubName: Full=Cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase);[Mycobacterium tuberculosis] Length = 563 Score = 754 bits (1946), Expect = 0.0 Identities = 398/561 (70%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGR+IDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+E+YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >tr|A5U1V1|A5U1V1_MYCTA Tax_Id=419947 (deaD)SubName: Full=ATP-dependent RNA helicase DeaD;[Mycobacterium tuberculosis] Length = 563 Score = 754 bits (1946), Expect = 0.0 Identities = 398/561 (70%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGR+IDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+E+YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >tr|D6FZK0|D6FZK0_MYCTU Tax_Id=478435 SubName: Full=Cold shock deaD-box protein A deaD;[Mycobacterium tuberculosis KZN 605] Length = 563 Score = 754 bits (1946), Expect = 0.0 Identities = 398/561 (70%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGR+IDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+E+YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >tr|D5Z2G2|D5Z2G2_MYCTU Tax_Id=537209 SubName: Full=Cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase);[Mycobacterium tuberculosis GM 1503] Length = 563 Score = 754 bits (1946), Expect = 0.0 Identities = 398/561 (70%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGR+IDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+E+YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >tr|D5YQN2|D5YQN2_MYCTU Tax_Id=515616 SubName: Full=ATP-dependent RNA helicase DeaD;[Mycobacterium tuberculosis 02_1987] Length = 563 Score = 754 bits (1946), Expect = 0.0 Identities = 398/561 (70%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGR+IDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+E+YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >tr|D5Y2P3|D5Y2P3_MYCTU Tax_Id=520141 SubName: Full=Cold-shock DEAD-box protein A;[Mycobacterium tuberculosis T85] Length = 563 Score = 754 bits (1946), Expect = 0.0 Identities = 398/561 (70%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGR+IDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+E+YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >tr|A2VHE8|A2VHE8_MYCTU Tax_Id=348776 SubName: Full=Cold-shock deaD-box protein A deaD (ATP-dependent RNA helicase);[Mycobacterium tuberculosis C] Length = 563 Score = 754 bits (1946), Expect = 0.0 Identities = 398/561 (70%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGR+IDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct: 129 LRRGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+E+YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >tr|D6FR94|D6FR94_MYCTU Tax_Id=611304 SubName: Full=Cold shock deaD-box protein A deaD;[Mycobacterium tuberculosis K85] Length = 563 Score = 753 bits (1945), Expect = 0.0 Identities = 398/561 (70%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGRVIDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TP+YK Sbjct: 129 LRRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPKYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+E+YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >tr|D6F3K7|D6F3K7_MYCTU Tax_Id=611302 SubName: Full=Cold shock deaD-box protein A deaD;[Mycobacterium tuberculosis T46] Length = 563 Score = 753 bits (1945), Expect = 0.0 Identities = 398/561 (70%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGRVIDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct: 129 LRRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+++YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVKEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >tr|D5ZF11|D5ZF11_MYCTU Tax_Id=537210 SubName: Full=Cold shock deaD-box protein A deaD;[Mycobacterium tuberculosis T17] Length = 563 Score = 753 bits (1945), Expect = 0.0 Identities = 398/561 (70%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGRVIDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct: 129 LRRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+++YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVKEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >tr|D5XSM2|D5XSM2_MYCTU Tax_Id=515617 SubName: Full=Cold shock deaD-box protein A deaD;[Mycobacterium tuberculosis T92] Length = 563 Score = 753 bits (1945), Expect = 0.0 Identities = 398/561 (70%), Positives = 457/561 (81%), Gaps = 11/561 (1%) Query: 17 APTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFA 76 A + TFADLQIHP VL+A+ DVGYESP+AIQAATIP ++AGSDVVGLAQTGTGKTAAFA Sbjct: 9 AASAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFA 68 Query: 77 IPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSG 136 IP+LSKID + + QALVL PTRELALQVAEAFGRYG++L Q+NVLPIYGGSSY VQL+G Sbjct: 69 IPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAG 128 Query: 137 LRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYK 196 LRRGAQVVVGTPGRVIDHLER TLDLS++D+LVLDEADEMLTMGFA++VERIL++TPEYK Sbjct: 129 LRRGAQVVVGTPGRVIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYK 188 Query: 197 QVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILE 256 QVALFSATMP AIRK++ KYLHDP EVT KAKTA AENISQ +IQVA RKMDALTR+LE Sbjct: 189 QVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLE 246 Query: 257 VEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIA 316 VE +AMIVFVRTKQATEE+A++L+ARGF+AAAI+GD+ QAQRERTI+AL+DG IDIL+A Sbjct: 247 VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVA 306 Query: 317 TDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIE 376 TDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A++FV+PRE HLLK+IE Sbjct: 307 TDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIE 366 Query: 377 KATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADI 436 KATR L EA+LP+VEDVN QRVAKF DSI+++L PGI+LFRRL+++YERE +VP+ADI Sbjct: 367 KATRQTLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVKEYEREHDVPMADI 426 Query: 437 AAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRH 496 AAALAVQ R GE FLM L TYR+ VGKRH Sbjct: 427 AAALAVQCRGGEAFLMA------PDPPLSRRNRDQRRDRPQRPKRRPDLTTYRVAVGKRH 480 Query: 497 KVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINL 556 K+GPG IVGAIANEGGLHR++FG I I D+SLV TRISGVLI+L Sbjct: 481 KIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDL 540 Query: 557 QPDRGP---RREGAGKPSGKY 574 +P R P RR GKP K+ Sbjct: 541 RPYRPPDAARRHNGGKPRRKH 561 >tr|C1AZS3|C1AZS3_RHOOB Tax_Id=632772 (deaD)SubName: Full=ATP-dependent DEAD-box RNA helicase DeaD; EC=3.6.1.-;[Rhodococcus opacus] Length = 587 Score = 744 bits (1922), Expect = 0.0 Identities = 394/572 (68%), Positives = 456/572 (79%), Gaps = 11/572 (1%) Query: 18 PTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFAI 77 P PTFADL I VL+A++DVGYESPS IQAATIPP+LAG+DVVGLAQTGTGKTAAFA+ Sbjct: 8 PEPPTFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAV 67 Query: 78 PILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSGL 137 PILSKID +++ QALVLAPTRELALQVAEAFG+Y +H+P ++VLPIYGG SY VQLSGL Sbjct: 68 PILSKIDLTQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGL 127 Query: 138 RRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYKQ 197 RRGA VVVGTPGRVIDHLE+GTLDLSKL YLVLDEADEML MGF E+VERIL+DTPEYKQ Sbjct: 128 RRGAHVVVGTPGRVIDHLEKGTLDLSKLAYLVLDEADEMLKMGFQEDVERILSDTPEYKQ 187 Query: 198 VALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILEV 257 VALFSATMP AIRKI+ +YLHDPVE+TVK+KT+TA NISQR++QVA RK+DALTR+LEV Sbjct: 188 VALFSATMPGAIRKISKQYLHDPVEITVKSKTSTASNISQRYVQVAHQRKLDALTRVLEV 247 Query: 258 EEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIAT 317 E+ AMI+FVRTKQATE++A+RL++RGF+AAAINGDI QAQRERTI LK G +DIL+AT Sbjct: 248 EDFGAMIIFVRTKQATEDLAERLRSRGFSAAAINGDIVQAQRERTIGQLKSGALDILVAT 307 Query: 318 DVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIEK 377 DVAARGLDV+RISHV+NYDIPHDTESYVHRIGRTGRAGR+G A+LFV PRERHLLK+IEK Sbjct: 308 DVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIEK 367 Query: 378 ATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADIA 437 ATR L E +LPSV+DVNAQRV+KF DSI++SL + + LFR++IEDYE+E +VPLADIA Sbjct: 368 ATRQPLAEMQLPSVDDVNAQRVSKFGDSITESLTSDNLALFRKMIEDYEQEHDVPLADIA 427 Query: 438 AALAVQTRNGEEFLMT-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDV 492 AALAVQ+R+GE FLM LATYRI V Sbjct: 428 AALAVQSRDGEAFLMAPEPPPAPRREREPRERPARRFDDGPPTRSRGPEGQELATYRIAV 487 Query: 493 GKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGV 552 GKRH+V PG IVGAIANEGGL R++FGHI+IR D+SLV TRISGV Sbjct: 488 GKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPADLSSETLEALRRTRISGV 547 Query: 553 LINLQPDRGP--RREGAG----KPSGKYKPHR 578 LI LQPD GP R G G + GK++ R Sbjct: 548 LIQLQPDSGPPSGRPGRGGRDDRAGGKFQRDR 579 >tr|Q0S3S1|Q0S3S1_RHOSR Tax_Id=101510 SubName: Full=Probable cold-shock DEAD-box protein;[Rhodococcus sp.] Length = 586 Score = 744 bits (1921), Expect = 0.0 Identities = 388/560 (69%), Positives = 453/560 (80%), Gaps = 8/560 (1%) Query: 18 PTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFAI 77 P PTFADL I VL+A++DVGYESPS IQAATIPP+LAG+DVVGLAQTGTGKTAAFA+ Sbjct: 8 PEPPTFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAV 67 Query: 78 PILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSGL 137 PILSKID +++ QALVLAPTRELALQVAEAFG+Y +H+P ++VLPIYGG SY VQLSGL Sbjct: 68 PILSKIDLTQKSPQALVLAPTRELALQVAEAFGKYSAHIPGLHVLPIYGGQSYGVQLSGL 127 Query: 138 RRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYKQ 197 RRGA VVVGTPGRVIDHLE+GTLDLSKL YLVLDEADEML MGF E+VERILADTPEYKQ Sbjct: 128 RRGAHVVVGTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILADTPEYKQ 187 Query: 198 VALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILEV 257 VALFSATMP AIRKI+ +Y+HDPVE+T+K+KT+TA NISQR++QVA RK+DALTR+LEV Sbjct: 188 VALFSATMPGAIRKISKQYMHDPVEITMKSKTSTASNISQRYVQVAHQRKLDALTRVLEV 247 Query: 258 EEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIAT 317 E+ +AMI+FVRTKQATE++A++L++RGF+A+AINGDI QAQRERTI LK G +DIL+AT Sbjct: 248 EDFEAMIIFVRTKQATEDLAEKLRSRGFSASAINGDIVQAQRERTIGQLKSGALDILVAT 307 Query: 318 DVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIEK 377 DVAARGLDV+RISHV+NYDIPHDTESYVHRIGRTGRAGR+G A+LFV PRERHLLK+IEK Sbjct: 308 DVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERHLLKAIEK 367 Query: 378 ATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADIA 437 ATR L E +LPSV+DVNAQRV+KF DSI++SL + + LFR++IEDYE+E +VPLADIA Sbjct: 368 ATRQPLAEMQLPSVDDVNAQRVSKFGDSITESLTSDNLALFRKMIEDYEQEHDVPLADIA 427 Query: 438 AALAVQTRNGEEFLMT-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDV 492 AALAVQ+R+GE FLM LATYRI V Sbjct: 428 AALAVQSRDGEAFLMAPEPPPAPRREREPRERPARRFDEGPPTRSRGPEGQELATYRIAV 487 Query: 493 GKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGV 552 GKRH+V PG IVGAIANEGGL R++FGHI+IR D+SLV TRISGV Sbjct: 488 GKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPADLSSETLEALRRTRISGV 547 Query: 553 LINLQPDRGPRREGAGKPSG 572 LI LQPD GP +G+P G Sbjct: 548 LIQLQPDSGP---PSGRPRG 564 >tr|D5PW93|D5PW93_COREQ Tax_Id=525370 (deaD2)SubName: Full=ATP-dependent RNA helicase DeaD;[Rhodococcus equi ATCC 33707] Length = 616 Score = 734 bits (1894), Expect = 0.0 Identities = 396/590 (67%), Positives = 457/590 (77%), Gaps = 18/590 (3%) Query: 1 MTSQEPDPSPVTNSDSAPTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSD 60 M+ E DP +D P TFADLQI VL+A++DVGYESPS IQAATIP +L G D Sbjct: 1 MSDTERDPQ----TDDNPI--TFADLQIDERVLKALSDVGYESPSPIQAATIPTLLEGKD 54 Query: 61 VVGLAQTGTGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVN 120 VVGLAQTGTGKTAAFAIPILS++D R+ QAL+LAPTRELALQVAEAFG+Y +H+P + Sbjct: 55 VVGLAQTGTGKTAAFAIPILSRLDVDRKVPQALILAPTRELALQVAEAFGKYSAHIPGLQ 114 Query: 121 VLPIYGGSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMG 180 VLPIYGG +Y VQLSGLRRGAQ++VGTPGRVIDHLE+GTLDLS L+YLVLDEADEML MG Sbjct: 115 VLPIYGGQAYGVQLSGLRRGAQIIVGTPGRVIDHLEKGTLDLSNLEYLVLDEADEMLKMG 174 Query: 181 FAEEVERILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFI 240 F ++VERILADTPEYKQVALFSATMP AIRKI+ +YLHDPVE+TVKAKTATA NI+QR++ Sbjct: 175 FQDDVERILADTPEYKQVALFSATMPPAIRKISKQYLHDPVEITVKAKTATASNITQRWV 234 Query: 241 QVAGPRKMDALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRE 300 QVA RK+DALTRILEVE +AMI+FVRTKQATE++A+RL+ARGF+AAAINGDI QAQRE Sbjct: 235 QVAHQRKLDALTRILEVESFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRE 294 Query: 301 RTISALKDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHA 360 RTI LK G +DIL+ATDVAARGLDV+RISHV+NYDIPHDTESYVHRIGRTGRAGR+G A Sbjct: 295 RTIGQLKSGALDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRTGDA 354 Query: 361 VLFVTPRERHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRR 420 +LFV PRERHLLKSIE+ TR L E +LP+VEDVNAQRV+KF DSI++SLN+ + LFR+ Sbjct: 355 LLFVAPRERHLLKSIERTTRQPLTEIQLPTVEDVNAQRVSKFGDSITESLNSENLALFRK 414 Query: 421 LIEDYERESNVPLADIAAALAVQTRNGEEFLMT------XXXXXXXXXXXXXXXXXXXXX 474 LIEDYERE +VPLADIAAALAVQ+R+GE FLM Sbjct: 415 LIEDYEREHDVPLADIAAALAVQSRDGESFLMAPEPPAPPRREREPRERPARRFDDGGPS 474 Query: 475 XXXXXXXXXXLATYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXX 534 ATYRI VGKRHKV PG IVGAIANEGGL R++FGHI+IR D+SLV Sbjct: 475 GPRVGRDGQEFATYRIAVGKRHKVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPA 534 Query: 535 XXXXXXXXXXXNTRISGVLINLQPDRG--PRREGAG----KPSGKYKPHR 578 TRISGVLI LQ D+G R+G G + GK+ R Sbjct: 535 NLPKETVEALRATRISGVLIQLQLDQGAPTGRQGRGGREDRAGGKFSRDR 584 >tr|C1A2G7|C1A2G7_RHOE4 Tax_Id=234621 (deaD)SubName: Full=Probable ATP-dependent RNA helicase DeaD; EC=3.6.1.-;[Rhodococcus erythropolis] Length = 591 Score = 721 bits (1862), Expect = 0.0 Identities = 379/562 (67%), Positives = 447/562 (79%), Gaps = 9/562 (1%) Query: 18 PTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFAI 77 P PTFADL I VL+A++DVGYESPS IQAATIPP+L G DVVGLAQTGTGKTAAFA+ Sbjct: 8 PEPPTFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTGKTAAFAV 67 Query: 78 PILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSGL 137 P+LS+IDTS + TQALVLAPTRELALQVAEAFG+Y +H+P +NVLPIYGG SY VQLSGL Sbjct: 68 PVLSRIDTSIKQTQALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQSYGVQLSGL 127 Query: 138 RRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYKQ 197 RRGA VVVGTPGRVIDHLE+GTLDL+ L YLVLDEADEML MGF E+VERIL DTP KQ Sbjct: 128 RRGAHVVVGTPGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVERILRDTPGDKQ 187 Query: 198 VALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILEV 257 VALFSATMP +IR+I+ +YL++PVE+TVK+KT+TA NI+QR+IQVA RK+DALTR+LEV Sbjct: 188 VALFSATMPGSIRRISKQYLNNPVEITVKSKTSTASNITQRYIQVAHQRKLDALTRVLEV 247 Query: 258 EEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIAT 317 E +AMI+FVRTKQATE++A++L+ARG +AAAINGDI QAQRERTI LK+G +DIL+AT Sbjct: 248 EAFEAMIIFVRTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGALDILVAT 307 Query: 318 DVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIEK 377 DVAARGLDV+RISHV+NYDIPHDTESYVHRIGRTGRAGR G A+LFV PRERHLLKSIEK Sbjct: 308 DVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRQGDALLFVAPRERHLLKSIEK 367 Query: 378 ATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADIA 437 ATR L E +LPSV+DVNAQRVAKF DSI++SL + + +FR++IEDY++E +VPL DIA Sbjct: 368 ATRQPLAEMQLPSVDDVNAQRVAKFGDSITESLASENLAMFRKMIEDYDQEHDVPLIDIA 427 Query: 438 AALAVQTRNGEEFLMT------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRID 491 AALA+Q+R+GE FL++ LA YRI Sbjct: 428 AALALQSRDGEAFLLSPEPPAPPRREREPREPRPPRRFDDGPAPRSRGPEGQELAAYRIA 487 Query: 492 VGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISG 551 VGKRH+V PG IVGAIANEGGL R++FGHI+IR D+S+V TRISG Sbjct: 488 VGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSIVELPADLSNETLEALRRTRISG 547 Query: 552 VLINLQPDRGPRREGAGKPSGK 573 VLI LQPD GP + G+PSG+ Sbjct: 548 VLIQLQPDFGPPQ---GRPSGR 566 >tr|C3JTM9|C3JTM9_RHOER Tax_Id=596309 SubName: Full=Cold-shock DEAD box protein A; EC=3.6.1.-;[Rhodococcus erythropolis SK121] Length = 591 Score = 721 bits (1862), Expect = 0.0 Identities = 379/562 (67%), Positives = 447/562 (79%), Gaps = 9/562 (1%) Query: 18 PTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFAI 77 P PTFADL I VL+A++DVGYESPS IQAATIPP+L G DVVGLAQTGTGKTAAFA+ Sbjct: 8 PEPPTFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLEGKDVVGLAQTGTGKTAAFAV 67 Query: 78 PILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSGL 137 P+LS+IDTS + TQALVLAPTRELALQVAEAFG+Y +H+P +NVLPIYGG SY VQLSGL Sbjct: 68 PVLSRIDTSIKQTQALVLAPTRELALQVAEAFGKYSAHIPGLNVLPIYGGQSYGVQLSGL 127 Query: 138 RRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYKQ 197 RRGA VVVGTPGRVIDHLE+GTLDL+ L YLVLDEADEML MGF E+VERIL DTP KQ Sbjct: 128 RRGAHVVVGTPGRVIDHLEKGTLDLTNLKYLVLDEADEMLKMGFQEDVERILRDTPGDKQ 187 Query: 198 VALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILEV 257 VALFSATMP +IR+I+ +YL++PVE+TVK+KT+TA NI+QR+IQVA RK+DALTR+LEV Sbjct: 188 VALFSATMPGSIRRISKQYLNNPVEITVKSKTSTASNITQRYIQVAHQRKLDALTRVLEV 247 Query: 258 EEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIAT 317 E +AMI+FVRTKQATE++A++L+ARG +AAAINGDI QAQRERTI LK+G +DIL+AT Sbjct: 248 EAFEAMIIFVRTKQATEDLAEKLRARGHSAAAINGDIVQAQRERTIGQLKNGALDILVAT 307 Query: 318 DVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIEK 377 DVAARGLDV+RISHV+NYDIPHDTESYVHRIGRTGRAGR G A+LFV PRERHLLKSIEK Sbjct: 308 DVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRQGDALLFVAPRERHLLKSIEK 367 Query: 378 ATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADIA 437 ATR L E +LPSV+DVNAQRVAKF DSI++SL + + +FR++IEDY++E +VPL DIA Sbjct: 368 ATRQPLAEMQLPSVDDVNAQRVAKFGDSITESLASENLAMFRKMIEDYDQEHDVPLIDIA 427 Query: 438 AALAVQTRNGEEFLMT------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRID 491 AALA+Q+R+GE FL++ LA YRI Sbjct: 428 AALALQSRDGEAFLLSPEPPAPPRREREPREPRPPRRFDDGPAPRSRGPEGQELAAYRIA 487 Query: 492 VGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISG 551 VGKRH+V PG IVGAIANEGGL R++FGHI+IR D+S+V TRISG Sbjct: 488 VGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSIVELPADLSNETLEALRRTRISG 547 Query: 552 VLINLQPDRGPRREGAGKPSGK 573 VLI LQPD GP + G+PSG+ Sbjct: 548 VLIQLQPDFGPPQ---GRPSGR 566 >tr|Q5YQK7|Q5YQK7_NOCFA Tax_Id=37329 (deaD)SubName: Full=Putative ATP-dependent RNA helicase;[Nocardia farcinica] Length = 602 Score = 707 bits (1825), Expect = 0.0 Identities = 380/579 (65%), Positives = 443/579 (76%), Gaps = 16/579 (2%) Query: 14 SDSAPTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTA 73 S S P+FADL I +L+A+ DVGYESPS IQAATIPP+L G+DVVGLAQTGTGKTA Sbjct: 22 SGSGSAGPSFADLGIDDRILRAIADVGYESPSPIQAATIPPLLDGADVVGLAQTGTGKTA 81 Query: 74 AFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQ 133 AFAIPIL ++ + R +ALVLAPTRELA+QVAEAFGRY +H+P ++VLPIYGG SY VQ Sbjct: 82 AFAIPILMGLEVTGRQPRALVLAPTRELAIQVAEAFGRYAAHMPGLHVLPIYGGQSYGVQ 141 Query: 134 LSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTP 193 LSGLRRGA VVVGTPGRVIDHLE+GTLDLS+L YLVLDEADEML MGF E+VERILADTP Sbjct: 142 LSGLRRGAHVVVGTPGRVIDHLEKGTLDLSQLQYLVLDEADEMLKMGFQEDVERILADTP 201 Query: 194 EYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTR 253 KQVALFSATMPAAIRKI+ +YL +PVE+TVKAKT T NI+QR++QV+ RK+DALTR Sbjct: 202 REKQVALFSATMPAAIRKISKQYLREPVEITVKAKTQTNTNITQRWVQVSHQRKLDALTR 261 Query: 254 ILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDI 313 +LEVE +AMI+FVRTKQ TEE+A++L+ARGF+AAAINGDI Q QRERTI LK G +DI Sbjct: 262 VLEVEPFEAMIIFVRTKQGTEELAEKLRARGFSAAAINGDIAQNQRERTIGQLKSGALDI 321 Query: 314 LIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLK 373 L+ATDVAARGLDV+RISHV+NYDIPHDTESYVHRIGRTGRAGRSG A+LFV PRERHLLK Sbjct: 322 LVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGQALLFVAPRERHLLK 381 Query: 374 SIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPL 433 +IE+ATR L E +LPSVEDVNAQRV+KF D+I+++L++ + LFR+LIEDYERE N+PL Sbjct: 382 AIERATRHPLEEMQLPSVEDVNAQRVSKFGDAITENLSSANLPLFRKLIEDYEREHNIPL 441 Query: 434 ADIAAALAVQTRNGEEFLM-----TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATY 488 DIAAALAV + +G+ F M LATY Sbjct: 442 VDIAAALAVGSYDGDNFFMEAEPEPERRERVPRERPARRFDEERGGGSHHRATGTELATY 501 Query: 489 RIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTR 548 RI VGKRH+V PG IVGAIANEGGL R++FGHI+IR D+SLV TR Sbjct: 502 RISVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPAQLPAETLEALRRTR 561 Query: 549 ISGVLINLQPD----------RGPRRE-GAGKPSGKYKP 576 ISGVLI LQ D RGPRR+ AGK + KP Sbjct: 562 ISGVLIQLQLDQGPPAQRAFSRGPRRDRDAGKRPERRKP 600 >tr|D5UWR2|D5UWR2_TSUPA Tax_Id=521096 SubName: Full=DEAD/DEAH box helicase domain protein;[Tsukamurella paurometabola DSM 20162] Length = 602 Score = 696 bits (1796), Expect = 0.0 Identities = 370/566 (65%), Positives = 429/566 (75%), Gaps = 18/566 (3%) Query: 22 TFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFAIPILS 81 TF DL I VL+A+ +VGYE+PS IQAATIPP+LAG+DVVGLAQTGTGKTAAFA+P+LS Sbjct: 29 TFLDLGIDERVLRALAEVGYENPSPIQAATIPPLLAGNDVVGLAQTGTGKTAAFAVPVLS 88 Query: 82 KIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSGLRRGA 141 KID R QALVLAPTRELALQV+EAFG+Y H+P + VLPIYGG SY VQLSGLRRGA Sbjct: 89 KIDGESRTPQALVLAPTRELALQVSEAFGKYAVHMPNITVLPIYGGQSYGVQLSGLRRGA 148 Query: 142 QVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYKQVALF 201 Q++VGTPGRVIDHLE+GTLDLS L++LVLDEADEMLTMGF E+VERILADTPE+KQVALF Sbjct: 149 QIIVGTPGRVIDHLEKGTLDLSNLEFLVLDEADEMLTMGFQEDVERILADTPEFKQVALF 208 Query: 202 SATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILEVEEGD 261 SATMP AIRKI KYLHDPVE++VKAKTAT NI+QR++QVA RK+DALTR+LEVEE D Sbjct: 209 SATMPPAIRKIAKKYLHDPVEISVKAKTATGSNITQRYLQVAHQRKLDALTRLLEVEEFD 268 Query: 262 AMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIATDVAA 321 MI+FVRTK ATEE+A++L+ARG AAAAINGDI QAQRERTI LKDG +DIL+ATDVAA Sbjct: 269 GMIIFVRTKSATEELAEKLRARGHAAAAINGDIVQAQRERTIGQLKDGKVDILVATDVAA 328 Query: 322 RGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIEKATRS 381 RGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGR G A+LFVTPRERHLL++IEKATR Sbjct: 329 RGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRKGDALLFVTPRERHLLRAIEKATRQ 388 Query: 382 KLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADIAAALA 441 L E LPSVEDVNA RV KF +SI+++L+ + +FRRLIEDY ++VPL D+AAALA Sbjct: 389 PLTEIGLPSVEDVNAHRVEKFGESITENLSNDHLQMFRRLIEDYVGANDVPLVDLAAALA 448 Query: 442 VQTRNGEEFLM---------------TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLA 486 +Q+R+G FL+ +A Sbjct: 449 LQSRDGSSFLLQPDPPERERNSRDRKDRDFGDRDDRGRGRRDRDRDREPSVHRKTGRPMA 508 Query: 487 TYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXN 546 YRI VGKR P IVGAIANEGGL R++FGHI+IR D+S+V Sbjct: 509 PYRIAVGKRQHATPSAIVGAIANEGGLRRSDFGHISIRPDHSIVELPDDLPREVFDALER 568 Query: 547 TRISGVLINLQPDRGPRREGAGKPSG 572 TRISG LINL+ D G G+PSG Sbjct: 569 TRISGQLINLEVDPG---APTGRPSG 591 >tr|D0L9Q4|D0L9Q4_GORB4 Tax_Id=526226 SubName: Full=DEAD/DEAH box helicase domain protein;[Gordonia bronchialis] Length = 597 Score = 689 bits (1779), Expect = 0.0 Identities = 371/578 (64%), Positives = 449/578 (77%), Gaps = 21/578 (3%) Query: 2 TSQEPDPSPVTNSDSAPTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDV 61 T PSP AP TF DL I V AV+DVGYE+PS IQAATIPP++AG DV Sbjct: 3 TDDTASPSP-----DAPDGLTFDDLDIDSRVRAAVSDVGYETPSPIQAATIPPLMAGRDV 57 Query: 62 VGLAQTGTGKTAAFAIPILSKID-----TSRRDTQALVLAPTRELALQVAEAFGRYGSHL 116 VGLAQTGTGKTAAFAIPILS+++ + R QALVLAPTRELALQVAEAFGRY +H+ Sbjct: 58 VGLAQTGTGKTAAFAIPILSRLEGAGDGSGPRKPQALVLAPTRELALQVAEAFGRYSAHM 117 Query: 117 PQVNVLPIYGGSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEM 176 P+V VLPIYGG SY VQL+GLRRGAQV+VGTPGRVIDHL+RGTLD+S+L +LVLDEADEM Sbjct: 118 PEVRVLPIYGGQSYGVQLAGLRRGAQVIVGTPGRVIDHLDRGTLDISELRFLVLDEADEM 177 Query: 177 LTMGFAEEVERILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENIS 236 LTMGFAE+VERILA+TP+ KQVALFSATMP+AIR++ +YL+DP E+TVK+KTATA+NI+ Sbjct: 178 LTMGFAEDVERILAETPDDKQVALFSATMPSAIRRLAQRYLNDPQEITVKSKTATAQNIT 237 Query: 237 QRFIQVAGPRKMDALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQ 296 QR++QV+ RK+DALTR LEVE DAMIVFVRTKQATEE+A++L++RGF+A AINGD+ Q Sbjct: 238 QRYLQVSHQRKLDALTRFLEVETFDAMIVFVRTKQATEELAEKLRSRGFSAVAINGDMAQ 297 Query: 297 AQRERTISALKDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGR 356 AQRERTI+ LK G IDIL+ATDVAARGLDV+RISHV+NYDIPHDTESYVHRIGRTGRAGR Sbjct: 298 AQRERTINQLKSGGIDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGR 357 Query: 357 SGHAVLFVTPRERHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGID 416 +G+A+LFV+PRERHLL+SIE+ATRS L E LPSVEDVNAQRVA+F DSI+++L++ +D Sbjct: 358 AGNALLFVSPRERHLLRSIERATRSTLTEIGLPSVEDVNAQRVARFADSITENLSSDNLD 417 Query: 417 LFRRLIEDYERESNVPLADIAAALAVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXX 476 +FR+LIE+Y R+++V +ADIAAALA++TR+G FLM Sbjct: 418 MFRQLIENYARDNDVAMADIAAALALETRDG-GFLMA---------PDPPEGDRPPRRER 467 Query: 477 XXXXXXXXLATYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXX 536 ATYRI VG++HKV PG IVGAIANEGGL R +FG+I+IR D+SLV Sbjct: 468 APRRAGGSFATYRIAVGRKHKVSPGAIVGAIANEGGLTRGDFGNISIRDDFSLVELPDDL 527 Query: 537 XXXXXXXXXNTRISGVLINLQPDRG-PRREGAGKPSGK 573 +TRI I+++ D G PR G K G+ Sbjct: 528 DNETLSALRDTRIGRNPIDIRRDLGAPRARGGAKRGGQ 565 >tr|D1VF44|D1VF44_9ACTO Tax_Id=298654 SubName: Full=DEAD/DEAH box helicase domain protein;[Frankia sp. EuI1c] Length = 566 Score = 640 bits (1652), Expect = 0.0 Identities = 346/549 (63%), Positives = 407/549 (74%), Gaps = 11/549 (2%) Query: 20 EPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFAIPI 79 +PTF DL + VL+A+T++GYE PS IQA TIP +L G DVVGLAQTGTGKTAAFA+PI Sbjct: 7 QPTFHDLGLGSPVLRALTELGYEVPSPIQAGTIPALLDGRDVVGLAQTGTGKTAAFALPI 66 Query: 80 LSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSGLRR 139 LS+ID TQALVLAPTREL LQVAEAFGRY HL ++VLP+YGG +Y QL+G RR Sbjct: 67 LSRIDARSTATQALVLAPTRELVLQVAEAFGRYAHHLTGLHVLPVYGGQAYAPQLAGFRR 126 Query: 140 GAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYKQVA 199 GAQVVVGTPGRVIDHLERGTLDL L LVLDEADEML MGF EEV+RILADTP+ KQVA Sbjct: 127 GAQVVVGTPGRVIDHLERGTLDLGGLRMLVLDEADEMLRMGFQEEVDRILADTPDAKQVA 186 Query: 200 LFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILEVEE 259 LFSATMPA IR+I+ +YL DPVE+TV+A+T TA N QRF+ VAGPRKMDALTR+LEVE Sbjct: 187 LFSATMPAPIRRISRQYLRDPVEITVRARTVTAANTRQRFLTVAGPRKMDALTRVLEVEP 246 Query: 260 GDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIATDV 319 +AMI+FVRTK ATE+VA+RL++RGFA AINGD++Q QRE+ I+ L+DGT+D+L+ATDV Sbjct: 247 FEAMIIFVRTKSATEDVAERLRSRGFATEAINGDLSQPQREKLIAQLRDGTLDLLVATDV 306 Query: 320 AARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIEKAT 379 AARGLDVERI+HV+NYDIP D ESYVHRIGRTGRAGRSG A+L VTPRE+ LL +IEKAT Sbjct: 307 AARGLDVERITHVVNYDIPTDPESYVHRIGRTGRAGRSGEALLLVTPREKGLLAAIEKAT 366 Query: 380 RSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADIAAA 439 R L E ELP+ DVNA+RVAKF D+I+ +L+AP +FR L+ Y E +VPLADIAAA Sbjct: 367 RQPLTEMELPTPADVNARRVAKFHDAITAALDAPAHAVFRDLVLGYVGEHDVPLADIAAA 426 Query: 440 LAVQTRNGE-EFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRHKV 498 LAV TR EFL+ A+YRI VG +V Sbjct: 427 LAVMTRQEPGEFLL----------PPDTAPPAREKPARGAGRPRPVYASYRIGVGHYQRV 476 Query: 499 GPGHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINLQP 558 PG IVGA+ANEGGL R +FG I IR DYSLV TRI+G +NL+P Sbjct: 477 TPGQIVGALANEGGLDRADFGRIDIRADYSLVELPADLSKDAQRALTRTRIAGQPLNLRP 536 Query: 559 DRGPRREGA 567 +R R GA Sbjct: 537 ERPGRDSGA 545 >tr|C4LJP9|C4LJP9_CORK4 Tax_Id=645127 SubName: Full=ATP-dependent RNA helicase;[Corynebacterium kroppenstedtii] Length = 823 Score = 636 bits (1640), Expect = e-180 Identities = 346/592 (58%), Positives = 427/592 (72%), Gaps = 20/592 (3%) Query: 3 SQEPDPSPVTNSDSAPTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVV 62 S + D S T+ D P+F DL + V++AV VG+E+PS IQAATIP + G DVV Sbjct: 137 SSDKDASTDTDDDD-DEGPSFDDLDLSDDVVRAVKKVGFETPSPIQAATIPILAQGRDVV 195 Query: 63 GLAQTGTGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVL 122 GLAQTGTGKTAAFA+PILS++D S++ QALVL+PTRELALQVA+AF + HL V+VL Sbjct: 196 GLAQTGTGKTAAFALPILSRLDRSQKKPQALVLSPTRELALQVADAFQEFADHLGGVHVL 255 Query: 123 PIYGGSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFA 182 PIYGG SY +QLSGLRRGA +VVGTPGRVIDHLERG+LDLS+L YLVLDEADEML MGF Sbjct: 256 PIYGGQSYGIQLSGLRRGAHIVVGTPGRVIDHLERGSLDLSELKYLVLDEADEMLNMGFQ 315 Query: 183 EEVERILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQV 242 E+VERILADTPE+KQ ALFSATMPA+IR+++ +YL DP EVT+K++ TA+NI Q+++ V Sbjct: 316 EDVERILADTPEHKQTALFSATMPASIRRLSKQYLEDPREVTIKSQQRTADNIHQQYLLV 375 Query: 243 AGPRKMDALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERT 302 K+DALTRILEV E DAMI+F RTKQ TEE+A++L+ARGF+AAAINGD+ Q QRERT Sbjct: 376 NHHYKLDALTRILEVTEFDAMIMFARTKQNTEELAEKLRARGFSAAAINGDMAQNQRERT 435 Query: 303 ISALKDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVL 362 + L+DG +DIL+ATDVAARGLDVERISHV+NYDIPHDTESYVHRIGRTGRAGRSG A+L Sbjct: 436 VDQLRDGRLDILVATDVAARGLDVERISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAIL 495 Query: 363 FVTPRERHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLI 422 FVTPRER LL+SIE+AT+S + E +LP+V++VN R AKF SI++SL P +DLFR LI Sbjct: 496 FVTPRERRLLRSIERATKSSIEEMQLPTVDEVNETRKAKFAQSITESLADPQVDLFRGLI 555 Query: 423 EDYERESNVPLADIAAALAVQTRNGEEFLMT---------------XXXXXXXXXXXXXX 467 Y E PLADIAAALA Q+++G+EFL+ Sbjct: 556 NSYAEEHETPLADIAAALATQSQSGDEFLLKEDTIRRNDRRNDRRGRRNDREPDTRSLNE 615 Query: 468 XXXXXXXXXXXXXXXXXLATYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDY 527 +A Y+I VGKR +V PG IVGAIANEGGL+ +FG I+I ++ Sbjct: 616 RFSGKEPPRFTDRTGKEMAVYKIAVGKRQQVRPGAIVGAIANEGGLNSRDFGKISIFSEH 675 Query: 528 SLVXXXXXXXXXXXXXXXNTRISGVLINLQPDRGPRREGAGKPSGKYKPHRK 579 SLV +TR+SG LI ++PD G AG+P G +K R+ Sbjct: 676 SLVELPADLPMEVFEALEDTRVSGQLIKIEPDPG---APAGRP-GAHKRDRQ 723 >tr|A1SQL1|A1SQL1_NOCSJ Tax_Id=196162 SubName: Full=DEAD/DEAH box helicase domain protein;[Nocardioides sp.] Length = 589 Score = 635 bits (1638), Expect = e-180 Identities = 351/600 (58%), Positives = 420/600 (70%), Gaps = 30/600 (5%) Query: 1 MTSQEPDPSPVTNSDSAPTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSD 60 M+S E D D+ E TFADL + VL+A+ DVGYE PSAIQAATIPP+LAG D Sbjct: 1 MSSDEQD-------DTTTPEVTFADLGLSDQVLKALADVGYEKPSAIQAATIPPLLAGRD 53 Query: 61 VVGLAQTGTGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVN 120 VVGLAQTGTGKTAAFA+PILS++D ++ QALVLAPTRELALQV EAF RY +H+ V+ Sbjct: 54 VVGLAQTGTGKTAAFALPILSRLDLTQTTPQALVLAPTRELALQVCEAFERYAAHVKGVH 113 Query: 121 VLPIYGGSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMG 180 VLP+YGG Y VQLS LRRG VVVGTPGR++DHLE+GTLDLS+L +LVLDEADEML MG Sbjct: 114 VLPVYGGQGYGVQLSALRRGVHVVVGTPGRIMDHLEKGTLDLSELRFLVLDEADEMLNMG 173 Query: 181 FAEEVERILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFI 240 FAE+VE ILADTP+ K VALFSATMPA IR+I+ KYL DP E+TVK KTATA NI+QR++ Sbjct: 174 FAEDVETILADTPDDKNVALFSATMPAQIRRISKKYLDDPAEITVKGKTATASNITQRYL 233 Query: 241 QVAGPRKMDALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRE 300 V+ P+K+DALTRILEVE + MIVFVRTK TE +A++L+ARG +A AINGD+ QAQRE Sbjct: 234 TVSYPQKVDALTRILEVENFEGMIVFVRTKNETETLAEKLRARGLSAMAINGDVAQAQRE 293 Query: 301 RTISALKDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHA 360 RT++ LK G +DIL+ATDVAARGLDVERISHV+NYDIP DTESYVHRIGRTGRAGRSG A Sbjct: 294 RTVNQLKSGKLDILVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDA 353 Query: 361 VLFVTPRERHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLN-APGIDLFR 419 + FVTPRER+LLK IEKATR L + +LP+VEDVN+ R+++F D+I+++L+ ID FR Sbjct: 354 ISFVTPRERYLLKHIEKATRQPLTQMQLPTVEDVNSTRLSRFDDAITEALSQTQRIDAFR 413 Query: 420 RLIEDYERESNVPLADIAAALAVQTRNGEEFLM------------------TXXXXXXXX 461 ++ Y RE +VP AD+AAALAV + L+ Sbjct: 414 DIVAHYVREHDVPEADVAAALAVVAQGETPLLLDPADRANELRAPREERAGQGTRRDRHD 473 Query: 462 XXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHI 521 +ATYRI VGKRHKV P IVGAIANEGGL R +FGHI Sbjct: 474 HGGPGGHGGPPRERRPRGRSDVPMATYRIAVGKRHKVEPRQIVGAIANEGGLSRQDFGHI 533 Query: 522 TIRLDYSLVXXXXXXXXXXXXXXXNTRISGVLINLQPDRGPRREGAGKPSGKYKPHRKVK 581 IR D+SLV +TRISG LI L D G G + KP K + Sbjct: 534 DIRGDHSLVELPADLPAGAWDSLRSTRISGKLIELTRDGG----GPAADTRHKKPRHKTR 589 >tr|Q8FQ74|Q8FQ74_COREF Tax_Id=152794 SubName: Full=Putative cold shock DEAD-box protein A;[Corynebacterium efficiens] Length = 736 Score = 628 bits (1619), Expect = e-178 Identities = 339/574 (59%), Positives = 418/574 (72%), Gaps = 15/574 (2%) Query: 5 EPDPSPVTNS--DSAPTEPT--FADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSD 60 E VT S +S+ TE + F L + VL AV VG+E+PS IQA TIP ++ G D Sbjct: 85 EDSSEDVTQSSHESSSTEASTGFDALGLPQQVLDAVRKVGFETPSPIQAQTIPVLMDGHD 144 Query: 61 VVGLAQTGTGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVN 120 VVGLAQTGTGKTAAFA+P+LS+ID S R QALVLAPTRELALQVA++F + HL +N Sbjct: 145 VVGLAQTGTGKTAAFALPVLSRIDKSVRSPQALVLAPTRELALQVADSFQSFADHLGGLN 204 Query: 121 VLPIYGGSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMG 180 VLPIYGG +Y +QLSGLRRGA +VVGTPGR+IDHLE+G+LD+S L +LVLDEADEML MG Sbjct: 205 VLPIYGGQAYGIQLSGLRRGAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMG 264 Query: 181 FAEEVERILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFI 240 F E+VERILADTP+ KQVALFSATMP IR+++ +YL++P E++VK++T TA NI+QRF+ Sbjct: 265 FQEDVERILADTPDDKQVALFSATMPNGIRRLSKQYLNNPQEISVKSETRTATNITQRFL 324 Query: 241 QVAGPRKMDALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRE 300 VA KMDALTRILEV E +AMI+FVRTK TEEVA++L+ARGF+AAAINGDI QAQRE Sbjct: 325 SVAHRNKMDALTRILEVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRE 384 Query: 301 RTISALKDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHA 360 RT+ LKDG +DIL+ATDVAARGLDVERISHV+NYDIP+DTESYVHRIGRTGRAGR+G A Sbjct: 385 RTVDQLKDGRLDILVATDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEA 444 Query: 361 VLFVTPRERHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRR 420 +LFVTPRER +L+SIE+AT + L+E ELP+V++VN R KF DSI+++L P + LFR Sbjct: 445 ILFVTPRERRMLRSIERATNAPLVEMELPTVDEVNEYRKVKFADSITEALENPQVALFRT 504 Query: 421 LIEDYERESNVPLADIAAALAVQTRNGEEFLMT-----------XXXXXXXXXXXXXXXX 469 LI++Y +++VPL D+AAALA Q + G +F +T Sbjct: 505 LIKEYAEKNDVPLEDVAAALATQAQAGNDFFLTEQAADRDRGRGDRRRDRDFDDRGGRGR 564 Query: 470 XXXXXXXXXXXXXXXLATYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSL 529 LATYRI VGKR V PG IVGA+ANEGGL+ +FG ITI D++L Sbjct: 565 DRGDRPSRFDRDDANLATYRIAVGKRQHVRPGAIVGALANEGGLNSKDFGRITIAADHTL 624 Query: 530 VXXXXXXXXXXXXXXXNTRISGVLINLQPDRGPR 563 V +TRISG LIN++ D G R Sbjct: 625 VELPKDLPQSVLDNLRDTRISGQLINIERDSGGR 658 >tr|C8NKV2|C8NKV2_COREF Tax_Id=196164 (deaD)SubName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.1.-;[Corynebacterium efficiens YS-314] Length = 736 Score = 628 bits (1619), Expect = e-178 Identities = 339/574 (59%), Positives = 418/574 (72%), Gaps = 15/574 (2%) Query: 5 EPDPSPVTNS--DSAPTEPT--FADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSD 60 E VT S +S+ TE + F L + VL AV VG+E+PS IQA TIP ++ G D Sbjct: 85 EDSSEDVTQSSHESSSTEASTGFDALGLPQQVLDAVRKVGFETPSPIQAQTIPVLMDGHD 144 Query: 61 VVGLAQTGTGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVN 120 VVGLAQTGTGKTAAFA+P+LS+ID S R QALVLAPTRELALQVA++F + HL +N Sbjct: 145 VVGLAQTGTGKTAAFALPVLSRIDKSVRSPQALVLAPTRELALQVADSFQSFADHLGGLN 204 Query: 121 VLPIYGGSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMG 180 VLPIYGG +Y +QLSGLRRGA +VVGTPGR+IDHLE+G+LD+S L +LVLDEADEML MG Sbjct: 205 VLPIYGGQAYGIQLSGLRRGAHIVVGTPGRIIDHLEKGSLDISGLRFLVLDEADEMLNMG 264 Query: 181 FAEEVERILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFI 240 F E+VERILADTP+ KQVALFSATMP IR+++ +YL++P E++VK++T TA NI+QRF+ Sbjct: 265 FQEDVERILADTPDDKQVALFSATMPNGIRRLSKQYLNNPQEISVKSETRTATNITQRFL 324 Query: 241 QVAGPRKMDALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRE 300 VA KMDALTRILEV E +AMI+FVRTK TEEVA++L+ARGF+AAAINGDI QAQRE Sbjct: 325 SVAHRNKMDALTRILEVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRE 384 Query: 301 RTISALKDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHA 360 RT+ LKDG +DIL+ATDVAARGLDVERISHV+NYDIP+DTESYVHRIGRTGRAGR+G A Sbjct: 385 RTVDQLKDGRLDILVATDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEA 444 Query: 361 VLFVTPRERHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRR 420 +LFVTPRER +L+SIE+AT + L+E ELP+V++VN R KF DSI+++L P + LFR Sbjct: 445 ILFVTPRERRMLRSIERATNAPLVEMELPTVDEVNEYRKVKFADSITEALENPQVALFRT 504 Query: 421 LIEDYERESNVPLADIAAALAVQTRNGEEFLMT-----------XXXXXXXXXXXXXXXX 469 LI++Y +++VPL D+AAALA Q + G +F +T Sbjct: 505 LIKEYAEKNDVPLEDVAAALATQAQAGNDFFLTEQAADRDRGRGDRRRDRDFDDRGGRGR 564 Query: 470 XXXXXXXXXXXXXXXLATYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSL 529 LATYRI VGKR V PG IVGA+ANEGGL+ +FG ITI D++L Sbjct: 565 DRGDRPSRFDRDDANLATYRIAVGKRQHVRPGAIVGALANEGGLNSKDFGRITIAADHTL 624 Query: 530 VXXXXXXXXXXXXXXXNTRISGVLINLQPDRGPR 563 V +TRISG LIN++ D G R Sbjct: 625 VELPKDLPQSVLDNLRDTRISGQLINIERDSGGR 658 >tr|A4AJZ0|A4AJZ0_9ACTN Tax_Id=312284 SubName: Full=ATP-dependent RNA helicase;[marine actinobacterium PHSC20C1] Length = 638 Score = 624 bits (1610), Expect = e-177 Identities = 335/584 (57%), Positives = 413/584 (70%), Gaps = 16/584 (2%) Query: 7 DPSPVTNSDSAPTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQ 66 D SD+ T TF+DL + AVL+AV ++GYE+PSAIQAATIP +L G DVVGLAQ Sbjct: 3 DSDSTATSDTTETAITFSDLALSDAVLKAVREIGYETPSAIQAATIPTLLEGRDVVGLAQ 62 Query: 67 TGTGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYG 126 TGTGKTAAFA+PILS++D S+ QALVL+PTRELALQV EAF +Y +H+ V+VLP+YG Sbjct: 63 TGTGKTAAFALPILSRLDVSQSKPQALVLSPTRELALQVCEAFEKYATHMRGVHVLPVYG 122 Query: 127 GSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVE 186 G +Y VQLS LRRG VVVGTPGR++DHL +GTLDLS+L YLVLDEADEML MGFAE+VE Sbjct: 123 GQAYGVQLSALRRGVHVVVGTPGRIMDHLAKGTLDLSELKYLVLDEADEMLKMGFAEDVE 182 Query: 187 RILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPR 246 ILADTPE KQVALFSATMPA IR+I+ KYL D E+TVK++T T+ N SQR++ V+ P+ Sbjct: 183 TILADTPEDKQVALFSATMPAQIRRISKKYLRDAEEITVKSQTTTSANTSQRYLVVSYPQ 242 Query: 247 KMDALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISAL 306 K+DALTRILEVE + MIVFVRTK TE +A++L+ARG++AAAI+GD+ QAQRERT++ L Sbjct: 243 KVDALTRILEVENFEGMIVFVRTKSETENLAEKLRARGYSAAAISGDVAQAQRERTVNQL 302 Query: 307 KDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTP 366 K G +DIL+ATDVAARGLDV+RISHV+N+DIP DTESYVHRIGRTGRAGRSG A+ FVTP Sbjct: 303 KSGKLDILVATDVAARGLDVDRISHVVNFDIPVDTESYVHRIGRTGRAGRSGSAISFVTP 362 Query: 367 RERHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLN-APGIDLFRRLIEDY 425 RER LL +IEKATR L + +LPSVEDVN+ R+ +F D+I+++LN P I FR +I Y Sbjct: 363 RERRLLTAIEKATRQPLTQMQLPSVEDVNSTRLTRFDDAITEALNQQPRISAFRDIIAHY 422 Query: 426 ERESNVPLADIAAALAVQTRNGEEFLMT---------------XXXXXXXXXXXXXXXXX 470 ++P D+AAALAV + L++ Sbjct: 423 VEHHDIPETDVAAALAVVAQGDTPLLLSAEEERAQRFSEREERNSRTDRPERGGDRGGDR 482 Query: 471 XXXXXXXXXXXXXXLATYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLV 530 + YRI+VGKR +V P IVGA+ANEGGL R++FGHI IR D+SLV Sbjct: 483 GGDRPERRPRSTKPMTAYRIEVGKRQRVEPRQIVGALANEGGLSRDDFGHIQIRPDFSLV 542 Query: 531 XXXXXXXXXXXXXXXNTRISGVLINLQPDRGPRREGAGKPSGKY 574 +TRISG LI + PDR GA GKY Sbjct: 543 ELPADMSKDVLERLRDTRISGKLIEISPDRKANGGGARGADGKY 586 >tr|Q6NHW2|Q6NHW2_CORDI Tax_Id=1717 (deaD)SubName: Full=DEAD-box helicase;[Corynebacterium diphtheriae] Length = 680 Score = 622 bits (1603), Expect = e-176 Identities = 336/584 (57%), Positives = 413/584 (70%), Gaps = 15/584 (2%) Query: 3 SQEPDPSPVTNSDSAPTEPTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVV 62 + E S +DSA + F L + A+L+AV VG+E+PS IQA TIP ++ G DV+ Sbjct: 50 TSEATDSAQQEADSAEKDG-FEALGLPDAILKAVAKVGFETPSPIQAQTIPVLMQGHDVM 108 Query: 63 GLAQTGTGKTAAFAIPILSKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVL 122 GLAQTGTGKTAAFA+PILS+ID +R QAL+LAPTRELALQVA++F + HL ++VL Sbjct: 109 GLAQTGTGKTAAFALPILSRIDVKKRHPQALILAPTRELALQVADSFQSFADHLGDIHVL 168 Query: 123 PIYGGSSYTVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFA 182 PIYGG +Y +QLSGLRRGAQ++VGTPGRVIDHLE+G+LD+S L +LVLDEADEML MGF Sbjct: 169 PIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISNLRFLVLDEADEMLNMGFQ 228 Query: 183 EEVERILADTPEYKQVALFSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQV 242 E+VERIL DTPE KQVALFSATMP IR+++ Y+ DP E+ VK++T T NI+QR++ V Sbjct: 229 EDVERILEDTPEDKQVALFSATMPNGIRRLSRDYMKDPHEIQVKSQTRTNTNITQRYLNV 288 Query: 243 AGPRKMDALTRILEVEEGDAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERT 302 A K+DALTRILEV E +AMI+FVRTK TEEVA++L+ARGF+AAAINGDI QAQRERT Sbjct: 289 AHRNKLDALTRILEVTEFEAMIMFVRTKHETEEVAEKLRARGFSAAAINGDIAQAQRERT 348 Query: 303 ISALKDGTIDILIATDVAARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVL 362 + LKDG +DIL+ATDVAARGLDVERI+HV NYDIP+DTESYVHRIGRTGRAGRSG A+L Sbjct: 349 VDQLKDGRLDILVATDVAARGLDVERITHVFNYDIPNDTESYVHRIGRTGRAGRSGEAIL 408 Query: 363 FVTPRERHLLKSIEKATRSKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLI 422 FVTPRER +L+SIE+AT +KLIE +LP+V++VN R AKF DSI++SL + +FR LI Sbjct: 409 FVTPRERRMLRSIERATNAKLIEMDLPTVDEVNESRKAKFADSITESLEDDQVAIFRSLI 468 Query: 423 EDYERESNVPLADIAAALAVQTRNGEEFLM------------TXXXXXXXXXXXXXXXXX 470 + Y E +VPL DIAAALA Q R G EFLM Sbjct: 469 KSYAEEHDVPLEDIAAALATQARAGSEFLMKEPPPEKRRERRDRDDRRGGRDRFDRDDRR 528 Query: 471 XXXXXXXXXXXXXXLATYRIDVGKRHKVGPGHIVGAIANEGGLHRNEFGHITIRLDYSLV 530 + YR+ VGKR V PG IVGA+ANEGGL +FG I I +D++LV Sbjct: 529 GGRDRGSRFERNDDMQLYRLAVGKRQHVRPGAIVGALANEGGLSNKDFGRINIFVDHTLV 588 Query: 531 XXXXXXXXXXXXXXXNTRISGVLINLQPDRG--PRREGAGKPSG 572 +TRISG LI+++ D G PRR G G Sbjct: 589 ELPKNMDPSVIDRLSDTRISGQLIHIEKDNGRPPRRNDDGDRGG 632 >tr|A4FMF6|A4FMF6_SACEN Tax_Id=405948 (deaD)SubName: Full=ATP-dependent RNA helicase;[Saccharopolyspora erythraea] Length = 578 Score = 619 bits (1597), Expect = e-175 Identities = 328/561 (58%), Positives = 406/561 (72%), Gaps = 8/561 (1%) Query: 21 PTFADLQIHPAVLQAVTDVGYESPSAIQAATIPPMLAGSDVVGLAQTGTGKTAAFAIPIL 80 P+F +L + P VLQ ++++GYE+PS IQA TIPP+L G DV+GLAQTGTGKTAAFA+PIL Sbjct: 2 PSFDELDLDPRVLQVLSEIGYETPSPIQAQTIPPLLEGHDVMGLAQTGTGKTAAFALPIL 61 Query: 81 SKIDTSRRDTQALVLAPTRELALQVAEAFGRYGSHLPQVNVLPIYGGSSYTVQLSGLRRG 140 S++D + QALVLAPTRELA+QVAEAF RY +HLP +VLPIYGG SY QL+GL+RG Sbjct: 62 SRLDLDAKTPQALVLAPTRELAIQVAEAFQRYAAHLPGFHVLPIYGGQSYGPQLAGLKRG 121 Query: 141 AQVVVGTPGRVIDHLERGTLDLSKLDYLVLDEADEMLTMGFAEEVERILADTPEYKQVAL 200 A VVVGTPGRVIDHL +G+LDL+ L LVLDEADEML MGF E+VE IL PE +QVAL Sbjct: 122 AHVVVGTPGRVIDHLNKGSLDLTGLKNLVLDEADEMLRMGFIEDVETILQSVPEQRQVAL 181 Query: 201 FSATMPAAIRKITTKYLHDPVEVTVKAKTATAENISQRFIQVAGPRKMDALTRILEVEEG 260 FSATMP IRKI+ YL++PVE++VK KT TA NI+QR+I V GP K+DALTRILEVE Sbjct: 182 FSATMPPQIRKISQSYLNEPVEISVKTKTTTATNITQRYIPVRGPAKLDALTRILEVETF 241 Query: 261 DAMIVFVRTKQATEEVADRLKARGFAAAAINGDINQAQRERTISALKDGTIDILIATDVA 320 DAMIVFVRTKQ TEE+A++L+ARGF+AAAINGDI QA RERTI L++G +DIL+ATDVA Sbjct: 242 DAMIVFVRTKQLTEELAEKLQARGFSAAAINGDIPQAARERTIGHLREGRVDILVATDVA 301 Query: 321 ARGLDVERISHVINYDIPHDTESYVHRIGRTGRAGRSGHAVLFVTPRERHLLKSIEKATR 380 ARGLDVERISHV+NYDIPHD+ESYVHRIGRTGRAGRSG A+LFV+PRERH+L+SIEKATR Sbjct: 302 ARGLDVERISHVLNYDIPHDSESYVHRIGRTGRAGRSGEAILFVSPRERHMLRSIEKATR 361 Query: 381 SKLIEAELPSVEDVNAQRVAKFRDSISDSLNAPGIDLFRRLIEDYERESNVPLADIAAAL 440 + + ELPS+E VN QR+AKF I+D+L ++LF+ L+E+YER +VP A+IAAAL Sbjct: 362 QSIGQMELPSIEAVNDQRLAKFAQGITDTLAKGDLELFKGLVEEYERTHDVPAAEIAAAL 421 Query: 441 AVQTRNGEEFLMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLATYRIDVGKRHKVGP 500 A + + LM TYR++VG+R++V P Sbjct: 422 ASMVQGDQPLLM------EREPEPEPNRRGRDGGAAKFQPTSSDTETYRVEVGRRNRVTP 475 Query: 501 GHIVGAIANEGGLHRNEFGHITIRLDYSLVXXXXXXXXXXXXXXXNTRIS--GVLINLQP 558 +VGA+ANEGGL GHI IR ++L+ T+++ G+ I+L Sbjct: 476 SALVGALANEGGLPSKHIGHIDIRDGHTLIELPADLPDDMLRKLRKTQVAGRGLRISLAD 535 Query: 559 DRGPRREGAGKPSGKYKPHRK 579 R G K +PHRK Sbjct: 536 GEFVARRPHGPGRDKPRPHRK 556 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.317 0.134 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 4,191,189,365 Number of extensions: 160406050 Number of successful extensions: 602739 Number of sequences better than 10.0: 26955 Number of HSP's gapped: 569505 Number of HSP's successfully gapped: 29375 Length of query: 581 Length of database: 4,236,830,644 Length adjustment: 144 Effective length of query: 437 Effective length of database: 2,435,698,228 Effective search space: 1064400125636 Effective search space used: 1064400125636 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 84 (37.0 bits)