BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSMEG_5072
         (257 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           12,507,864 sequences; 4,236,830,644 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|A0R2D4|A0R2D4_MYCS2 Tax_Id=246196 SubName: Full=Extracytoplas...   518   e-145
tr|O05767|O05767_MYCSM Tax_Id=1772 (sigE)SubName: Full=Extracyto...   416   e-114
tr|A1TDM1|A1TDM1_MYCVP Tax_Id=350058 SubName: Full=RNA polymeras...   403   e-110
tr|Q1B4T5|Q1B4T5_MYCSS Tax_Id=164756 SubName: Full=RNA polymeras...   402   e-110
tr|A3Q3Q6|A3Q3Q6_MYCSJ Tax_Id=164757 SubName: Full=RNA polymeras...   402   e-110
tr|A1UKA2|A1UKA2_MYCSK Tax_Id=189918 SubName: Full=RNA polymeras...   402   e-110
tr|A4T8X0|A4T8X0_MYCGI Tax_Id=350054 SubName: Full=RNA polymeras...   397   e-109
tr|Q7U0C9|Q7U0C9_MYCBO Tax_Id=1765 (sigE)SubName: Full=ALTERNATI...   369   e-100
tr|O06289|O06289_MYCTU Tax_Id=1773 (sigE)SubName: Full=ALTERNATI...   369   e-100
tr|C6DUF1|C6DUF1_MYCTK Tax_Id=478434 SubName: Full=Alternative R...   369   e-100
tr|C1AML5|C1AML5_MYCBT Tax_Id=561275 (sigE)SubName: Full=RNA pol...   369   e-100
tr|A5WLP9|A5WLP9_MYCTF Tax_Id=336982 SubName: Full=Alternative R...   369   e-100
tr|A5U1R9|A5U1R9_MYCTA Tax_Id=419947 (sigE)SubName: Full=RNA pol...   369   e-100
tr|A1KI09|A1KI09_MYCBP Tax_Id=410289 (sigE)SubName: Full=Alterna...   369   e-100
tr|D6FZN3|D6FZN3_MYCTU Tax_Id=478435 SubName: Full=Alternative R...   369   e-100
tr|D6FR61|D6FR61_MYCTU Tax_Id=611304 SubName: Full=Alternative R...   369   e-100
tr|D6FG61|D6FG61_MYCTU Tax_Id=611303 SubName: Full=Alternative R...   369   e-100
tr|D6F3H2|D6F3H2_MYCTU Tax_Id=611302 SubName: Full=Alternative R...   369   e-100
tr|D5ZEX5|D5ZEX5_MYCTU Tax_Id=537210 SubName: Full=Alternative R...   369   e-100
tr|D5YQK0|D5YQK0_MYCTU Tax_Id=515616 SubName: Full=Alternative R...   369   e-100
tr|D5YE62|D5YE62_MYCTU Tax_Id=520140 SubName: Full=Alternative R...   369   e-100
tr|D5Y2L0|D5Y2L0_MYCTU Tax_Id=520141 SubName: Full=Alternative R...   369   e-100
tr|D5XSI9|D5XSI9_MYCTU Tax_Id=515617 SubName: Full=Alternative R...   369   e-100
tr|A4KGE5|A4KGE5_MYCTU Tax_Id=395095 SubName: Full=Alternative R...   369   e-100
tr|A2VHC1|A2VHC1_MYCTU Tax_Id=348776 SubName: Full=Alternative R...   369   e-100
tr|D5PG71|D5PG71_9MYCO Tax_Id=525368 (sigE)SubName: Full=RNA pol...   363   1e-98
tr|B2HS46|B2HS46_MYCMM Tax_Id=216594 (sigE)SubName: Full=Alterna...   362   3e-98
tr|A0PVW3|A0PVW3_MYCUA Tax_Id=362242 (sigE)SubName: Full=Alterna...   362   3e-98
tr|Q73WV3|Q73WV3_MYCPA Tax_Id=1770 (sigE)SubName: Full=SigE;[Myc...   361   4e-98
tr|A0QCH1|A0QCH1_MYCA1 Tax_Id=243243 SubName: Full=RNA polymeras...   361   4e-98
tr|O05735|O05735_MYCAV Tax_Id=1764 (sigE)SubName: Full=Extracyto...   361   4e-98
tr|Q9CCA6|Q9CCA6_MYCLE Tax_Id=1769 (sigE)SubName: Full=ECF subfa...   350   1e-94
tr|B8ZQZ2|B8ZQZ2_MYCLB Tax_Id=561304 (sigE)SubName: Full=ECF sub...   350   1e-94
tr|B1MLM1|B1MLM1_MYCA9 Tax_Id=561007 SubName: Full=Probable alte...   348   5e-94
tr|D5PWF4|D5PWF4_COREQ Tax_Id=525370 (sigE)SubName: Full=SigE pr...   324   6e-87
tr|Q5YQG0|Q5YQG0_NOCFA Tax_Id=37329 SubName: Full=Putative sigma...   322   2e-86
tr|Q0S3Y2|Q0S3Y2_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,...   317   1e-84
tr|C1AZL3|C1AZL3_RHOOB Tax_Id=632772 (sigE)SubName: Full=RNA pol...   316   2e-84
tr|C1A2N1|C1A2N1_RHOE4 Tax_Id=234621 (sigE)SubName: Full=Putativ...   309   2e-82
tr|C3JTT3|C3JTT3_RHOER Tax_Id=596309 SubName: Full=Sigma factor,...   309   2e-82
tr|D0L8U6|D0L8U6_GORB4 Tax_Id=526226 SubName: Full=RNA polymeras...   300   1e-79
tr|Q49971|Q49971_MYCLE Tax_Id=1769 SubName: Full=RpoE;[Mycobacte...   293   2e-77
tr|D5UVA9|D5UVA9_TSUPA Tax_Id=521096 SubName: Full=RNA polymeras...   290   9e-77
tr|C6WL01|C6WL01_ACTMD Tax_Id=446462 SubName: Full=RNA polymeras...   274   9e-72
tr|A4F8J4|A4F8J4_SACEN Tax_Id=405948 SubName: Full=Putative ECF ...   272   3e-71

>tr|A0R2D4|A0R2D4_MYCS2 Tax_Id=246196 SubName: Full=Extracytoplasmic
           function alternative sigma factor;[Mycobacterium
           smegmatis]
          Length = 257

 Score =  518 bits (1334), Expect = e-145
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MEHDDRRASQVRAGNNRVVIRVEQIENNAVHEQEGSTTIASQPVTATHAAPVSMAHLEQF 60
           MEHDDRRASQVRAGNNRVVIRVEQIENNAVHEQEGSTTIASQPVTATHAAPVSMAHLEQF
Sbjct: 1   MEHDDRRASQVRAGNNRVVIRVEQIENNAVHEQEGSTTIASQPVTATHAAPVSMAHLEQF 60

Query: 61  TDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQ 120
           TDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQ
Sbjct: 61  TDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQ 120

Query: 121 ETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPAEDPNPE 180
           ETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPAEDPNPE
Sbjct: 121 ETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPAEDPNPE 180

Query: 181 QIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQ 240
           QIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQ
Sbjct: 181 QIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQ 240

Query: 241 QLRDYLAKHSSETAQSA 257
           QLRDYLAKHSSETAQSA
Sbjct: 241 QLRDYLAKHSSETAQSA 257


>tr|O05767|O05767_MYCSM Tax_Id=1772 (sigE)SubName:
           Full=Extracytoplasmic function alternative sigma
           factor;[Mycobacterium smegmatis]
          Length = 204

 Score =  416 bits (1069), Expect = e-114
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 54  MAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQH 113
           MAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQH
Sbjct: 1   MAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQH 60

Query: 114 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVP 173
           DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVP
Sbjct: 61  DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVP 120

Query: 174 AEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 233
           AEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS
Sbjct: 121 AEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 180

Query: 234 RIHRGRQQLRDYLAKHSSETAQSA 257
           RIHRGRQQLRDYLAKHSSETAQSA
Sbjct: 181 RIHRGRQQLRDYLAKHSSETAQSA 204


>tr|A1TDM1|A1TDM1_MYCVP Tax_Id=350058 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Mycobacterium
           vanbaalenii]
          Length = 269

 Score =  403 bits (1035), Expect = e-110
 Identities = 208/261 (79%), Positives = 220/261 (84%), Gaps = 10/261 (3%)

Query: 7   RASQVRAGNN----RVVIRVEQIENNAVH-EQEGSTTIASQPVTATHAAPVSMAHLEQFT 61
           R    R GNN    RVV       ++  H E E  TT    P  A  AAPV+MAHLEQFT
Sbjct: 9   RPDHARLGNNIPTGRVVAFERSSPSDRTHLETEDPTTTTQAPTAAPVAAPVTMAHLEQFT 68

Query: 62  DSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQE 121
           D+ WVEP+DE TGTAVFDATGD+AAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQE
Sbjct: 69  DAAWVEPADELTGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQE 128

Query: 122 TFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPAEDPNPEQ 181
           TFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPA++PNPEQ
Sbjct: 129 TFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPADEPNPEQ 188

Query: 182 IYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQQ 241
           IYHDSRLG DLQAALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQ 
Sbjct: 189 IYHDSRLGPDLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQA 248

Query: 242 LRDYLAKHSS-----ETAQSA 257
           LR+YLA+HS      +TA+SA
Sbjct: 249 LREYLARHSDAGAGRDTARSA 269


>tr|Q1B4T5|Q1B4T5_MYCSS Tax_Id=164756 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Mycobacterium sp.]
          Length = 260

 Score =  402 bits (1032), Expect = e-110
 Identities = 208/266 (78%), Positives = 221/266 (83%), Gaps = 15/266 (5%)

Query: 1   MEHDDRRASQVRAGNNRVVIRVEQIEN-----NAVHEQEGSTTIASQPVTAT----HAAP 51
           MEH  R    +R GN     RV + +      +A H+  G       P T T     AAP
Sbjct: 1   MEHGRR----LRFGNRNTADRVARNDQPTTMTDAGHDSAGPDL--EDPTTTTTAAAQAAP 54

Query: 52  VSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGN 111
           VSMAHLEQF+DSDWVEP+DE TGTAVFDATGD+  MPSWDELVRQHADRVYRLAYRLSGN
Sbjct: 55  VSMAHLEQFSDSDWVEPTDELTGTAVFDATGDKTTMPSWDELVRQHADRVYRLAYRLSGN 114

Query: 112 QHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDR 171
           QHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDR
Sbjct: 115 QHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDR 174

Query: 172 VPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTV 231
           VPA+DPNPEQIYHDSRLG DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTV
Sbjct: 175 VPADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTV 234

Query: 232 RSRIHRGRQQLRDYLAKHSSETAQSA 257
           RSRIHRGRQ LRD+LA+H+ + A SA
Sbjct: 235 RSRIHRGRQALRDHLARHAPDAATSA 260


>tr|A3Q3Q6|A3Q3Q6_MYCSJ Tax_Id=164757 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Mycobacterium sp.]
          Length = 253

 Score =  402 bits (1032), Expect = e-110
 Identities = 205/259 (79%), Positives = 220/259 (84%), Gaps = 8/259 (3%)

Query: 1   MEHDDRRASQVRAGNNRVVIRVEQIENNAVHEQEGSTT--IASQPVTATHAAPVSMAHLE 58
           MEH  R    +R GN     RV +  N+A  +  G     + +    A  AAPVSMAHLE
Sbjct: 1   MEHGRR----LRFGNRNSADRVAR--NDAGQDSAGPDMEDLTTTTTAAAQAAPVSMAHLE 54

Query: 59  QFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDL 118
           QF+DSDWVEP+DE TGTAVFDATGD+  MPSWDELVRQHADRVYRLAYRLSGNQHDAEDL
Sbjct: 55  QFSDSDWVEPTDELTGTAVFDATGDKTTMPSWDELVRQHADRVYRLAYRLSGNQHDAEDL 114

Query: 119 TQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPAEDPN 178
           TQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPA+DPN
Sbjct: 115 TQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPADDPN 174

Query: 179 PEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRG 238
           PEQI+HDSRLG DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRG
Sbjct: 175 PEQIFHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRG 234

Query: 239 RQQLRDYLAKHSSETAQSA 257
           RQ LR+YLA+H+ + A SA
Sbjct: 235 RQALREYLARHAPDAATSA 253


>tr|A1UKA2|A1UKA2_MYCSK Tax_Id=189918 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Mycobacterium sp.]
          Length = 260

 Score =  402 bits (1032), Expect = e-110
 Identities = 208/266 (78%), Positives = 221/266 (83%), Gaps = 15/266 (5%)

Query: 1   MEHDDRRASQVRAGNNRVVIRVEQIEN-----NAVHEQEGSTTIASQPVTAT----HAAP 51
           MEH  R    +R GN     RV + +      +A H+  G       P T T     AAP
Sbjct: 1   MEHGRR----LRFGNRNTADRVARNDQPTTMTDAGHDSAGPDL--EDPTTTTTAAAQAAP 54

Query: 52  VSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGN 111
           VSMAHLEQF+DSDWVEP+DE TGTAVFDATGD+  MPSWDELVRQHADRVYRLAYRLSGN
Sbjct: 55  VSMAHLEQFSDSDWVEPTDELTGTAVFDATGDKTTMPSWDELVRQHADRVYRLAYRLSGN 114

Query: 112 QHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDR 171
           QHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDR
Sbjct: 115 QHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDR 174

Query: 172 VPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTV 231
           VPA+DPNPEQIYHDSRLG DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTV
Sbjct: 175 VPADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTV 234

Query: 232 RSRIHRGRQQLRDYLAKHSSETAQSA 257
           RSRIHRGRQ LRD+LA+H+ + A SA
Sbjct: 235 RSRIHRGRQALRDHLARHAPDAATSA 260


>tr|A4T8X0|A4T8X0_MYCGI Tax_Id=350054 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Mycobacterium gilvum]
          Length = 282

 Score =  397 bits (1020), Expect = e-109
 Identities = 198/227 (87%), Positives = 211/227 (92%), Gaps = 5/227 (2%)

Query: 36  STTIASQPVTATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVR 95
           S+  A+ PV A  AAPVSMAH EQFT+++WVEP+DE TGTAVFDATGD+AAMPSWDELVR
Sbjct: 56  SSVSAAAPVAAPVAAPVSMAHREQFTEAEWVEPTDELTGTAVFDATGDKAAMPSWDELVR 115

Query: 96  QHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVR 155
           QHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVR
Sbjct: 116 QHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVR 175

Query: 156 RRGRIRMEALPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGL 215
           RRGRIRMEALPEDYDRVPA++PNPEQIYHDSRLGADLQAALDSL PEFRAAVVLCDIEGL
Sbjct: 176 RRGRIRMEALPEDYDRVPADEPNPEQIYHDSRLGADLQAALDSLAPEFRAAVVLCDIEGL 235

Query: 216 SYEEIGATLGVKLGTVRSRIHRGRQQLRDYLAKHSS-----ETAQSA 257
           SYEEIGATLGVKLGTVRSRIHRGRQ LRD+LA+HS      +TA+SA
Sbjct: 236 SYEEIGATLGVKLGTVRSRIHRGRQALRDHLARHSDVGAGRDTAKSA 282


>tr|Q7U0C9|Q7U0C9_MYCBO Tax_Id=1765 (sigE)SubName: Full=ALTERNATIVE
           RNA POLYMERASE SIGMA FACTOR SIGE;[Mycobacterium bovis]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|O06289|O06289_MYCTU Tax_Id=1773 (sigE)SubName: Full=ALTERNATIVE
           RNA POLYMERASE SIGMA FACTOR SIGE; SubName: Full=RNA
           polymerase sigma-70 factor, ECF subfamily; SubName:
           Full=SigE;[Mycobacterium tuberculosis]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|C6DUF1|C6DUF1_MYCTK Tax_Id=478434 SubName: Full=Alternative RNA
           polymerase sigma factor sigE;[Mycobacterium
           tuberculosis]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|C1AML5|C1AML5_MYCBT Tax_Id=561275 (sigE)SubName: Full=RNA
           polymerase sigma factor;[Mycobacterium bovis]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|A5WLP9|A5WLP9_MYCTF Tax_Id=336982 SubName: Full=Alternative RNA
           polymerase sigma factor sigE;[Mycobacterium
           tuberculosis]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|A5U1R9|A5U1R9_MYCTA Tax_Id=419947 (sigE)SubName: Full=RNA
           polymerase sigma-70 factor;[Mycobacterium tuberculosis]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|A1KI09|A1KI09_MYCBP Tax_Id=410289 (sigE)SubName:
           Full=Alternative RNA polymerase sigma factor
           sigE;[Mycobacterium bovis]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|D6FZN3|D6FZN3_MYCTU Tax_Id=478435 SubName: Full=Alternative RNA
           polymerase sigma factor sigE;[Mycobacterium tuberculosis
           KZN 605]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|D6FR61|D6FR61_MYCTU Tax_Id=611304 SubName: Full=Alternative RNA
           polymerase sigma factor sigE;[Mycobacterium tuberculosis
           K85]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|D6FG61|D6FG61_MYCTU Tax_Id=611303 SubName: Full=Alternative RNA
           polymerase sigma factor sigE;[Mycobacterium tuberculosis
           CPHL_A]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|D6F3H2|D6F3H2_MYCTU Tax_Id=611302 SubName: Full=Alternative RNA
           polymerase sigma factor sigE;[Mycobacterium tuberculosis
           T46]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|D5ZEX5|D5ZEX5_MYCTU Tax_Id=537210 SubName: Full=Alternative RNA
           polymerase sigma factor sigE;[Mycobacterium tuberculosis
           T17]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|D5YQK0|D5YQK0_MYCTU Tax_Id=515616 SubName: Full=Alternative RNA
           polymerase sigma factor sige;[Mycobacterium tuberculosis
           02_1987]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|D5YE62|D5YE62_MYCTU Tax_Id=520140 SubName: Full=Alternative RNA
           polymerase sigma factor sigE;[Mycobacterium tuberculosis
           EAS054]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|D5Y2L0|D5Y2L0_MYCTU Tax_Id=520141 SubName: Full=Alternative RNA
           polymerase sigma factor sigE;[Mycobacterium tuberculosis
           T85]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|D5XSI9|D5XSI9_MYCTU Tax_Id=515617 SubName: Full=Alternative RNA
           polymerase sigma factor sigE;[Mycobacterium tuberculosis
           T92]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|A4KGE5|A4KGE5_MYCTU Tax_Id=395095 SubName: Full=Alternative RNA
           polymerase sigma factor sigE;[Mycobacterium tuberculosis
           str. Haarlem]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|A2VHC1|A2VHC1_MYCTU Tax_Id=348776 SubName: Full=Alternative RNA
           polymerase sigma factor sigE;[Mycobacterium tuberculosis
           C]
          Length = 257

 Score =  369 bits (948), Expect = e-100
 Identities = 180/205 (87%), Positives = 188/205 (91%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +P SM+H +Q  D  WVEPSD+  GTAVFDATGD+A MPSWDELVRQHADRVYRL
Sbjct: 39  TITTLSPTSMSHPQQVRDDQWVEPSDQLQGTAVFDATGDKATMPSWDELVRQHADRVYRL 98

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 99  AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEA 158

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA++PNPEQIYHD+RLG DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 159 LPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDIEGLSYEEIGATL 218

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKH 249
           GVKLGTVRSRIHRGRQ LRDYLA H
Sbjct: 219 GVKLGTVRSRIHRGRQALRDYLAAH 243


>tr|D5PG71|D5PG71_9MYCO Tax_Id=525368 (sigE)SubName: Full=RNA
           polymerase sigma-70 factor;[Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 253

 Score =  363 bits (932), Expect = 1e-98
 Identities = 176/214 (82%), Positives = 190/214 (88%)

Query: 41  SQPVTATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADR 100
           S+ +  T  +P SM+H +     +WVEP+D   GTAVFDATGD++ MPSWDELVRQHADR
Sbjct: 30  SEEIITTLLSPTSMSHAQDCPADEWVEPADGLQGTAVFDATGDKSTMPSWDELVRQHADR 89

Query: 101 VYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRI 160
           VYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RI
Sbjct: 90  VYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARI 149

Query: 161 RMEALPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEI 220
           RMEALP+DY+RVPA++PNPEQIYHD+RLG DLQAALDSLPPEFRAAVVLCDIEGLSYEEI
Sbjct: 150 RMEALPDDYERVPADEPNPEQIYHDARLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEI 209

Query: 221 GATLGVKLGTVRSRIHRGRQQLRDYLAKHSSETA 254
           GATLGVKLGTVRSRIHRGRQ LRDYLA H    A
Sbjct: 210 GATLGVKLGTVRSRIHRGRQALRDYLAAHPERGA 243


>tr|B2HS46|B2HS46_MYCMM Tax_Id=216594 (sigE)SubName:
           Full=Alternative RNA polymerase sigma factor
           SigE;[Mycobacterium marinum]
          Length = 255

 Score =  362 bits (928), Expect = 3e-98
 Identities = 179/212 (84%), Positives = 187/212 (88%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +  +M+H +   D +W E SD   GTAVFDATGD+AAMPSWDELVRQHADRVYRL
Sbjct: 36  TITTLSTTTMSHPQLVRDDEWAETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRL 95

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQ DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 96  AYRLSGNQQDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEA 155

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA+DPNPEQIYHDSRLG DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 156 LPEDYDRVPADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 215

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKHSSETAQS 256
           GVKLGTVRSRIHRGRQ LRDYLA H   +  S
Sbjct: 216 GVKLGTVRSRIHRGRQALRDYLAAHPEHSELS 247


>tr|A0PVW3|A0PVW3_MYCUA Tax_Id=362242 (sigE)SubName:
           Full=Alternative RNA polymerase sigma factor
           SigE;[Mycobacterium ulcerans]
          Length = 255

 Score =  362 bits (928), Expect = 3e-98
 Identities = 179/212 (84%), Positives = 187/212 (88%)

Query: 45  TATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRL 104
           T T  +  +M+H +   D +W E SD   GTAVFDATGD+AAMPSWDELVRQHADRVYRL
Sbjct: 36  TITTLSTTTMSHPQLVRDDEWAETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRL 95

Query: 105 AYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEA 164
           AYRLSGNQ DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEA
Sbjct: 96  AYRLSGNQQDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEA 155

Query: 165 LPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 224
           LPEDYDRVPA+DPNPEQIYHDSRLG DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL
Sbjct: 156 LPEDYDRVPADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATL 215

Query: 225 GVKLGTVRSRIHRGRQQLRDYLAKHSSETAQS 256
           GVKLGTVRSRIHRGRQ LRDYLA H   +  S
Sbjct: 216 GVKLGTVRSRIHRGRQALRDYLAAHPEHSELS 247


>tr|Q73WV3|Q73WV3_MYCPA Tax_Id=1770 (sigE)SubName:
           Full=SigE;[Mycobacterium paratuberculosis]
          Length = 251

 Score =  361 bits (927), Expect = 4e-98
 Identities = 178/214 (83%), Positives = 187/214 (87%)

Query: 44  VTATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYR 103
           +  T  +P SM+H    +   W EPSD   GTAVFDATGD+ AMPSWDELVRQHADRVYR
Sbjct: 35  IITTLLSPSSMSHAHDPSADGWAEPSDGLQGTAVFDATGDKTAMPSWDELVRQHADRVYR 94

Query: 104 LAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRME 163
           LAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRME
Sbjct: 95  LAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRME 154

Query: 164 ALPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGAT 223
           ALPEDY+RVPA++PNPE+IYHDSRLG DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGAT
Sbjct: 155 ALPEDYERVPADEPNPEEIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGAT 214

Query: 224 LGVKLGTVRSRIHRGRQQLRDYLAKHSSETAQSA 257
           LGVKLGTVRSRIHRGRQ LRDYLA H    A  A
Sbjct: 215 LGVKLGTVRSRIHRGRQALRDYLAAHPDHDALRA 248


>tr|A0QCH1|A0QCH1_MYCA1 Tax_Id=243243 SubName: Full=RNA polymerase
           sigma-70 factor;[Mycobacterium avium]
          Length = 424

 Score =  361 bits (927), Expect = 4e-98
 Identities = 178/214 (83%), Positives = 187/214 (87%)

Query: 44  VTATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYR 103
           +  T  +P SM+H    +   W EPSD   GTAVFDATGD+ AMPSWDELVRQHADRVYR
Sbjct: 35  IITTLLSPSSMSHAHDPSADGWAEPSDGLQGTAVFDATGDKTAMPSWDELVRQHADRVYR 94

Query: 104 LAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRME 163
           LAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRME
Sbjct: 95  LAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRME 154

Query: 164 ALPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGAT 223
           ALPEDY+RVPA++PNPE+IYHDSRLG DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGAT
Sbjct: 155 ALPEDYERVPADEPNPEEIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGAT 214

Query: 224 LGVKLGTVRSRIHRGRQQLRDYLAKHSSETAQSA 257
           LGVKLGTVRSRIHRGRQ LRDYLA H    A  A
Sbjct: 215 LGVKLGTVRSRIHRGRQALRDYLAAHPDHDALRA 248


>tr|O05735|O05735_MYCAV Tax_Id=1764 (sigE)SubName:
           Full=Extracytoplasmic function alternative sigma
           factor;[Mycobacterium avium]
          Length = 251

 Score =  361 bits (927), Expect = 4e-98
 Identities = 178/214 (83%), Positives = 187/214 (87%)

Query: 44  VTATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYR 103
           +  T  +P SM+H    +   W EPSD   GTAVFDATGD+ AMPSWDELVRQHADRVYR
Sbjct: 35  IITTLLSPSSMSHAHDPSADGWAEPSDGLQGTAVFDATGDKTAMPSWDELVRQHADRVYR 94

Query: 104 LAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRME 163
           LAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRME
Sbjct: 95  LAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRME 154

Query: 164 ALPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGAT 223
           ALPEDY+RVPA++PNPE+IYHDSRLG DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGAT
Sbjct: 155 ALPEDYERVPADEPNPEEIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGAT 214

Query: 224 LGVKLGTVRSRIHRGRQQLRDYLAKHSSETAQSA 257
           LGVKLGTVRSRIHRGRQ LRDYLA H    A  A
Sbjct: 215 LGVKLGTVRSRIHRGRQALRDYLAAHPDHDALRA 248


>tr|Q9CCA6|Q9CCA6_MYCLE Tax_Id=1769 (sigE)SubName: Full=ECF
           subfamily sigma subunit;[Mycobacterium leprae]
          Length = 263

 Score =  350 bits (897), Expect = 1e-94
 Identities = 171/197 (86%), Positives = 179/197 (90%)

Query: 50  APVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLS 109
           +P  M+H     D DWVEP D   GTAVFDATGD+A MPSW+ELVRQHA RVY LAYRLS
Sbjct: 48  SPTIMSHPPPSRDDDWVEPFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLS 107

Query: 110 GNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDY 169
           GNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRM+ALP+DY
Sbjct: 108 GNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDY 167

Query: 170 DRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLG 229
           DRVPA++PNPEQIYHDSRLG DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLG
Sbjct: 168 DRVPADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLG 227

Query: 230 TVRSRIHRGRQQLRDYL 246
           TVRSRIHRGRQ LRDYL
Sbjct: 228 TVRSRIHRGRQALRDYL 244


>tr|B8ZQZ2|B8ZQZ2_MYCLB Tax_Id=561304 (sigE)SubName: Full=ECF
           subfamily sigma subunit;[Mycobacterium leprae]
          Length = 263

 Score =  350 bits (897), Expect = 1e-94
 Identities = 171/197 (86%), Positives = 179/197 (90%)

Query: 50  APVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLS 109
           +P  M+H     D DWVEP D   GTAVFDATGD+A MPSW+ELVRQHA RVY LAYRLS
Sbjct: 48  SPTIMSHPPPSRDDDWVEPFDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLS 107

Query: 110 GNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDY 169
           GNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRM+ALP+DY
Sbjct: 108 GNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDY 167

Query: 170 DRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLG 229
           DRVPA++PNPEQIYHDSRLG DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLG
Sbjct: 168 DRVPADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLG 227

Query: 230 TVRSRIHRGRQQLRDYL 246
           TVRSRIHRGRQ LRDYL
Sbjct: 228 TVRSRIHRGRQALRDYL 244


>tr|B1MLM1|B1MLM1_MYCA9 Tax_Id=561007 SubName: Full=Probable
           alternative RNA polymerase sigma factor;[Mycobacterium
           abscessus]
          Length = 256

 Score =  348 bits (892), Expect = 5e-94
 Identities = 181/245 (73%), Positives = 199/245 (81%), Gaps = 6/245 (2%)

Query: 13  AGNNRVVIRVEQIENNAVHEQEGSTTIASQPVTATHAAPVSMAHLEQFTDSDWVEPSDEP 72
           +GNN   I VEQ +        G   +  Q   A     +S     +F D+     +DE 
Sbjct: 16  SGNNTDGIWVEQADGLPTG---GEAAVTEQEEHAISLTRISEPDYTEFVDA---ANADEL 69

Query: 73  TGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQN 132
           +GTAVFDATGDQAAMPSWDELVR+HADRVYRLAYRLSG+Q DAEDLTQETFIRVFRS+QN
Sbjct: 70  SGTAVFDATGDQAAMPSWDELVREHADRVYRLAYRLSGSQQDAEDLTQETFIRVFRSLQN 129

Query: 133 YQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPAEDPNPEQIYHDSRLGADL 192
           YQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPA DP+PEQIYHD++LGADL
Sbjct: 130 YQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPATDPDPEQIYHDAQLGADL 189

Query: 193 QAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQQLRDYLAKHSSE 252
           QAALDSL PEFRAAVVLCDIEGLSYEEIGATL VKLGTVRSRIHRGRQ +R+YLA HSS 
Sbjct: 190 QAALDSLAPEFRAAVVLCDIEGLSYEEIGATLDVKLGTVRSRIHRGRQAIREYLAAHSSA 249

Query: 253 TAQSA 257
           +A +A
Sbjct: 250 SALAA 254


>tr|D5PWF4|D5PWF4_COREQ Tax_Id=525370 (sigE)SubName: Full=SigE
           protein;[Rhodococcus equi ATCC 33707]
          Length = 224

 Score =  324 bits (831), Expect = 6e-87
 Identities = 157/184 (85%), Positives = 169/184 (91%)

Query: 71  EPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 130
           EPTGTA FDATGD++AMPSWDELVR+H DRVYRLAYRLSGN  DAEDLTQ+TFIRVFRS+
Sbjct: 35  EPTGTAAFDATGDKSAMPSWDELVREHGDRVYRLAYRLSGNAQDAEDLTQDTFIRVFRSL 94

Query: 131 QNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPAEDPNPEQIYHDSRLGA 190
           QNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVP++ PNPEQIYHD+RL  
Sbjct: 95  QNYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRVPSDSPNPEQIYHDARLAP 154

Query: 191 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQQLRDYLAKHS 250
           DLQ+ALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQ LR++LA + 
Sbjct: 155 DLQSALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALREHLAANG 214

Query: 251 SETA 254
              A
Sbjct: 215 KVDA 218


>tr|Q5YQG0|Q5YQG0_NOCFA Tax_Id=37329 SubName: Full=Putative sigma
           factor;[Nocardia farcinica]
          Length = 255

 Score =  322 bits (826), Expect = 2e-86
 Identities = 162/218 (74%), Positives = 182/218 (83%), Gaps = 1/218 (0%)

Query: 40  ASQPVTATHAAPVSMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHAD 99
           A+ P+    AA  +      F  +D +  ++E +GTA FDATGD++ MPSWDELVR+HAD
Sbjct: 34  ATTPIDDEPAASGADPATADFATAD-LATAEELSGTAAFDATGDRSVMPSWDELVREHAD 92

Query: 100 RVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGR 159
           RVYRLAYRLSG+  DAEDLTQETFIRVFRS+ NYQPGTFEGWLHRITTNLFLDMVRRR R
Sbjct: 93  RVYRLAYRLSGDAQDAEDLTQETFIRVFRSLSNYQPGTFEGWLHRITTNLFLDMVRRRNR 152

Query: 160 IRMEALPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEE 219
           IRMEALPEDYDRVPAE P PEQ+YHD+RL  DLQ+ALDSL PEFRAAVVLCDIEGLSYEE
Sbjct: 153 IRMEALPEDYDRVPAEGPGPEQVYHDARLDPDLQSALDSLAPEFRAAVVLCDIEGLSYEE 212

Query: 220 IGATLGVKLGTVRSRIHRGRQQLRDYLAKHSSETAQSA 257
           IGATLGVKLGTVRSRIHRGRQ LR+YLA + S+   +A
Sbjct: 213 IGATLGVKLGTVRSRIHRGRQALREYLAHNGSQQRYTA 250


>tr|Q0S3Y2|Q0S3Y2_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,
           sigma 70 type, group 4 (ECF);[Rhodococcus sp.]
          Length = 210

 Score =  317 bits (811), Expect = 1e-84
 Identities = 154/177 (87%), Positives = 167/177 (94%)

Query: 71  EPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 130
           E TGTAVFDATG+++AMPSWDELVR+H DRVYRLAYRLSG+  DAEDLTQ+TFIRVFRS+
Sbjct: 21  ELTGTAVFDATGEKSAMPSWDELVREHGDRVYRLAYRLSGDAQDAEDLTQDTFIRVFRSL 80

Query: 131 QNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPAEDPNPEQIYHDSRLGA 190
            +YQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVPA+ PNPE+IYHD+RL A
Sbjct: 81  SDYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRVPADGPNPEEIYHDARLDA 140

Query: 191 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQQLRDYLA 247
           DLQAALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQ LR++LA
Sbjct: 141 DLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALREHLA 197


>tr|C1AZL3|C1AZL3_RHOOB Tax_Id=632772 (sigE)SubName: Full=RNA
           polymerase ECF-type sigma factor SigE;[Rhodococcus
           opacus]
          Length = 210

 Score =  316 bits (810), Expect = 2e-84
 Identities = 158/195 (81%), Positives = 175/195 (89%), Gaps = 2/195 (1%)

Query: 53  SMAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQ 112
           +MA  E+ TD    +   + TGTAVFDATG+++AMPSWDELVR+H DRVYRLAYRLSG+ 
Sbjct: 5   TMAPDERTTDEQLSDA--KLTGTAVFDATGEKSAMPSWDELVREHGDRVYRLAYRLSGDA 62

Query: 113 HDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRV 172
            DAEDLTQ+TFIRVFRS+ +YQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRV
Sbjct: 63  QDAEDLTQDTFIRVFRSLSDYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRV 122

Query: 173 PAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVR 232
           PA+ PNPE+IYHD+RL ADLQAALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVR
Sbjct: 123 PADGPNPEEIYHDARLDADLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVR 182

Query: 233 SRIHRGRQQLRDYLA 247
           SRIHRGRQ LR++LA
Sbjct: 183 SRIHRGRQALREHLA 197


>tr|C1A2N1|C1A2N1_RHOE4 Tax_Id=234621 (sigE)SubName: Full=Putative
           RNA polymerase ECF-type sigma factor SigE;[Rhodococcus
           erythropolis]
          Length = 273

 Score =  309 bits (792), Expect = 2e-82
 Identities = 151/177 (85%), Positives = 164/177 (92%)

Query: 71  EPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 130
           E  GTAVFDATG++++MPSWDELVRQH DRVYRLAYRLSG+  DAEDLTQ+TFIRVFRS+
Sbjct: 85  ELIGTAVFDATGEKSSMPSWDELVRQHGDRVYRLAYRLSGDAQDAEDLTQDTFIRVFRSL 144

Query: 131 QNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPAEDPNPEQIYHDSRLGA 190
            +YQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVP+  P+PEQIYHD+RL A
Sbjct: 145 SDYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRVPSPGPDPEQIYHDARLDA 204

Query: 191 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQQLRDYLA 247
            LQAALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQ +RD+LA
Sbjct: 205 GLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAIRDHLA 261


>tr|C3JTT3|C3JTT3_RHOER Tax_Id=596309 SubName: Full=Sigma factor,
           sigma 70 type, group 4;[Rhodococcus erythropolis SK121]
          Length = 273

 Score =  309 bits (792), Expect = 2e-82
 Identities = 151/177 (85%), Positives = 164/177 (92%)

Query: 71  EPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 130
           E  GTAVFDATG++++MPSWDELVRQH DRVYRLAYRLSG+  DAEDLTQ+TFIRVFRS+
Sbjct: 85  ELIGTAVFDATGEKSSMPSWDELVRQHGDRVYRLAYRLSGDAQDAEDLTQDTFIRVFRSL 144

Query: 131 QNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPAEDPNPEQIYHDSRLGA 190
            +YQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVP+  P+PEQIYHD+RL A
Sbjct: 145 SDYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRVPSPGPDPEQIYHDARLDA 204

Query: 191 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQQLRDYLA 247
            LQAALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQ +RD+LA
Sbjct: 205 GLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAIRDHLA 261


>tr|D0L8U6|D0L8U6_GORB4 Tax_Id=526226 SubName: Full=RNA polymerase
           sigma factor, sigma-70 family;[Gordonia bronchialis]
          Length = 201

 Score =  300 bits (767), Expect = 1e-79
 Identities = 148/195 (75%), Positives = 167/195 (85%), Gaps = 1/195 (0%)

Query: 63  SDWVEPSDE-PTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQE 121
           +D +E +D  P GTA FDATG+   MPSWDELVR+HADRVYRLAYRLSGNQHDAEDLTQE
Sbjct: 2   TDPLESADTVPAGTAGFDATGNDLLMPSWDELVREHADRVYRLAYRLSGNQHDAEDLTQE 61

Query: 122 TFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPAEDPNPEQ 181
           TFIRVFRS+ NY+PGTFEGWLHRITTNLFLDMVRRR +IRMEALPE+YDRVPA+ P+P+Q
Sbjct: 62  TFIRVFRSLSNYRPGTFEGWLHRITTNLFLDMVRRRNKIRMEALPEEYDRVPADTPDPQQ 121

Query: 182 IYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQQ 241
           ++  + L  DLQ ALDSL PEFRAAVVLCDIEGLSYEEI  TLGVKLGTVRSRIHRGRQ 
Sbjct: 122 VFDATNLDPDLQRALDSLAPEFRAAVVLCDIEGLSYEEIATTLGVKLGTVRSRIHRGRQT 181

Query: 242 LRDYLAKHSSETAQS 256
           +RD LA     +++S
Sbjct: 182 IRDALAAQGHTSSRS 196


>tr|Q49971|Q49971_MYCLE Tax_Id=1769 SubName:
           Full=RpoE;[Mycobacterium leprae]
          Length = 172

 Score =  293 bits (749), Expect = 2e-77
 Identities = 143/153 (93%), Positives = 148/153 (96%)

Query: 94  VRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDM 153
           +RQHA RVY LAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDM
Sbjct: 1   MRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDM 60

Query: 154 VRRRGRIRMEALPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIE 213
           VRRR RIRM+ALP+DYDRVPA++PNPEQIYHDSRLG DLQAALDSLPPEFRAAVVLCDIE
Sbjct: 61  VRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIE 120

Query: 214 GLSYEEIGATLGVKLGTVRSRIHRGRQQLRDYL 246
           GLSYEEIGATLGVKLGTVRSRIHRGRQ LRDYL
Sbjct: 121 GLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 153


>tr|D5UVA9|D5UVA9_TSUPA Tax_Id=521096 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Tsukamurella
           paurometabola DSM 20162]
          Length = 215

 Score =  290 bits (743), Expect = 9e-77
 Identities = 142/190 (74%), Positives = 161/190 (84%)

Query: 67  EPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRV 126
           E + E  GTA FDATGD++ MPSWDELVR+HADRVYRLAYRLSGN  DAEDLTQ+TFIRV
Sbjct: 23  ERATETAGTAAFDATGDRSDMPSWDELVREHADRVYRLAYRLSGNAQDAEDLTQDTFIRV 82

Query: 127 FRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPAEDPNPEQIYHDS 186
           FRS+Q+Y+PGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDY+RVP+ DP+P QIY D+
Sbjct: 83  FRSLQSYEPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYERVPSGDPDPGQIYADA 142

Query: 187 RLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQQLRDYL 246
            L   LQ ALD+L PEFRAAVVL DIEGLSYEE+ ATLGVKLGTVRSRIHRGR+ +R+ L
Sbjct: 143 NLNPQLQVALDALSPEFRAAVVLADIEGLSYEEVAATLGVKLGTVRSRIHRGRKSIREAL 202

Query: 247 AKHSSETAQS 256
                 ++ S
Sbjct: 203 ENQGLTSSAS 212


>tr|C6WL01|C6WL01_ACTMD Tax_Id=446462 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Actinosynnema mirum]
          Length = 194

 Score =  274 bits (700), Expect = 9e-72
 Identities = 130/170 (76%), Positives = 149/170 (87%)

Query: 88  PSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITT 147
           P+WDE+VR+HADRVYRLAYRL+GNQHDAEDLTQETFIRVFRS+ +Y+PGTFEGWLHRITT
Sbjct: 25  PTWDEVVREHADRVYRLAYRLTGNQHDAEDLTQETFIRVFRSLASYKPGTFEGWLHRITT 84

Query: 148 NLFLDMVRRRGRIRMEALPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAV 207
           NLFLDM RRR R+RME LPED DR+  +DP+PEQ+Y ++ L  DLQAALD LPPEFRAAV
Sbjct: 85  NLFLDMARRRSRLRMEGLPEDTDRLAGDDPSPEQVYTETHLDPDLQAALDELPPEFRAAV 144

Query: 208 VLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQQLRDYLAKHSSETAQSA 257
           VLCD+EGLSYEEIGATLGVKLGTVRSRIHRGRQ LR  L +  ++  + A
Sbjct: 145 VLCDVEGLSYEEIGATLGVKLGTVRSRIHRGRQALRVALERRRAQQREDA 194


>tr|A4F8J4|A4F8J4_SACEN Tax_Id=405948 SubName: Full=Putative ECF
           family RNA polymerase sigma factor;[Saccharopolyspora
           erythraea]
          Length = 201

 Score =  272 bits (696), Expect = 3e-71
 Identities = 130/171 (76%), Positives = 150/171 (87%), Gaps = 3/171 (1%)

Query: 88  PSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITT 147
           PSWDE+VRQHADR+YRLAYRL+GNQHDAEDLTQETFIRVFRS+ +Y+PGTFEGWLHRITT
Sbjct: 31  PSWDEVVRQHADRIYRLAYRLTGNQHDAEDLTQETFIRVFRSLASYKPGTFEGWLHRITT 90

Query: 148 NLFLDMVRRRGRIRMEALPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAV 207
           NLFLDM RRR R+RME LPED DR+P   P+PEQ+++D+ L  DLQAALD +PPEFRAAV
Sbjct: 91  NLFLDMARRRARLRMEGLPEDTDRLPGGGPSPEQVFNDTHLDPDLQAALDEMPPEFRAAV 150

Query: 208 VLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQQLRDYL---AKHSSETAQ 255
           VLCD+EGLSYEEIGATLGVKLGTVRSRIHRGRQ L+  L    +H+ E ++
Sbjct: 151 VLCDVEGLSYEEIGATLGVKLGTVRSRIHRGRQMLKATLEARREHAREDSE 201


  Database: Amellifera_nr
    Posted date:  Jul 23, 2010  5:10 AM
  Number of letters in database: 4,236,830,644
  Number of sequences in database:  12,507,864
  
Lambda     K      H
   0.317    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 12507864
Number of Hits to DB: 2,108,506,623
Number of extensions: 87535901
Number of successful extensions: 260302
Number of sequences better than 10.0: 11530
Number of HSP's gapped: 253282
Number of HSP's successfully gapped: 11537
Length of query: 257
Length of database: 4,236,830,644
Length adjustment: 135
Effective length of query: 122
Effective length of database: 2,548,269,004
Effective search space: 310888818488
Effective search space used: 310888818488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)