BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_5423 (1215 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|A0R3C5|A0R3C5_MYCS2 Tax_Id=246196 (mfd)SubName: Full=Transcri... 2195 0.0 tr|A3Q5G2|A3Q5G2_MYCSJ Tax_Id=164757 SubName: Full=Transcription... 1927 0.0 tr|Q1B434|Q1B434_MYCSS Tax_Id=164756 SubName: Full=Transcription... 1924 0.0 tr|A1UL14|A1UL14_MYCSK Tax_Id=189918 SubName: Full=Transcription... 1924 0.0 tr|A1TEF0|A1TEF0_MYCVP Tax_Id=350058 SubName: Full=Transcription... 1896 0.0 tr|A4T6M5|A4T6M5_MYCGI Tax_Id=350054 SubName: Full=Transcription... 1880 0.0 tr|B2HDI8|B2HDI8_MYCMM Tax_Id=216594 (mfd)SubName: Full=Transcri... 1826 0.0 tr|Q741V0|Q741V0_MYCPA Tax_Id=1770 (mfd)SubName: Full=Mfd;[Mycob... 1819 0.0 tr|A0PW58|A0PW58_MYCUA Tax_Id=362242 (mfd)SubName: Full=Transcri... 1818 0.0 tr|D5PFK2|D5PFK2_9MYCO Tax_Id=525368 (trcF)SubName: Full=Transcr... 1793 0.0 sp|P64326|MFD_MYCTU Tax_Id=1773 (mfd)RecName: Full=Transcription... 1778 0.0 sp|P64327|MFD_MYCBO Tax_Id=1765 (mfd)RecName: Full=Transcription... 1778 0.0 tr|C6DVT3|C6DVT3_MYCTK Tax_Id=478434 SubName: Full=Transcription... 1778 0.0 tr|C1AM11|C1AM11_MYCBT Tax_Id=561275 (mfd)SubName: Full=Putative... 1778 0.0 tr|A5WL42|A5WL42_MYCTF Tax_Id=336982 SubName: Full=Transcription... 1778 0.0 tr|A5U163|A5U163_MYCTA Tax_Id=419947 (mfd)SubName: Full=Transcri... 1778 0.0 tr|A1KHF8|A1KHF8_MYCBP Tax_Id=410289 (mfd)SubName: Full=Probable... 1778 0.0 tr|D6FFK2|D6FFK2_MYCTU Tax_Id=611303 SubName: Full=Transcription... 1778 0.0 tr|D6F2V9|D6F2V9_MYCTU Tax_Id=611302 SubName: Full=Transcription... 1778 0.0 tr|D5YPZ0|D5YPZ0_MYCTU Tax_Id=515616 SubName: Full=Transcription... 1778 0.0 tr|D5YDK2|D5YDK2_MYCTU Tax_Id=520140 SubName: Full=Transcription... 1778 0.0 tr|A4KFW0|A4KFW0_MYCTU Tax_Id=395095 SubName: Full=Transcription... 1778 0.0 tr|D6FPS2|D6FPS2_MYCTU Tax_Id=611304 SubName: Full=Transcription... 1777 0.0 tr|D5Z1R3|D5Z1R3_MYCTU Tax_Id=537209 SubName: Full=Transcription... 1776 0.0 tr|B8ZU68|B8ZU68_MYCLB Tax_Id=561304 (mfd)SubName: Full=Putative... 1702 0.0 tr|Q9CD43|Q9CD43_MYCLE Tax_Id=1769 (mfd)SubName: Full=Putative t... 1701 0.0 tr|B1MKF3|B1MKF3_MYCA9 Tax_Id=561007 SubName: Full=Probable tran... 1655 0.0 tr|Q5YQ14|Q5YQ14_NOCFA Tax_Id=37329 (mfd)SubName: Full=Putative ... 1573 0.0 tr|C1AY76|C1AY76_RHOOB Tax_Id=632772 (mfd)SubName: Full=Transcri... 1559 0.0 tr|D5PWZ3|D5PWZ3_COREQ Tax_Id=525370 (trcF)SubName: Full=Transcr... 1558 0.0 tr|Q0S4J8|Q0S4J8_RHOSR Tax_Id=101510 SubName: Full=Transcription... 1555 0.0 tr|C1A324|C1A324_RHOE4 Tax_Id=234621 (mfd)SubName: Full=Transcri... 1540 0.0 tr|C3JX01|C3JX01_RHOER Tax_Id=596309 (mfd)SubName: Full=Transcri... 1538 0.0 tr|D5UVJ4|D5UVJ4_TSUPA Tax_Id=521096 SubName: Full=Transcription... 1491 0.0 tr|D0L750|D0L750_GORB4 Tax_Id=526226 SubName: Full=Transcription... 1422 0.0 tr|A4F7Z2|A4F7Z2_SACEN Tax_Id=405948 (mfd)SubName: Full=Transcri... 1351 0.0 tr|C7MZH3|C7MZH3_SACVD Tax_Id=471857 SubName: Full=Transcription... 1342 0.0 tr|C6WJJ6|C6WJJ6_ACTMD Tax_Id=446462 SubName: Full=Transcription... 1340 0.0 tr|Q8FQT5|Q8FQT5_COREF Tax_Id=152794 SubName: Full=Putative tran... 1287 0.0 tr|C8NN51|C8NN51_COREF Tax_Id=196164 (mfd)SubName: Full=Transcri... 1287 0.0 tr|C5VBF1|C5VBF1_9CORY Tax_Id=553207 (mfd)SubName: Full=Transcri... 1282 0.0 tr|A4QCT9|A4QCT9_CORGB Tax_Id=340322 SubName: Full=Putative unch... 1281 0.0 tr|Q6M6I8|Q6M6I8_CORGL Tax_Id=1718 (mfd)SubName: Full=PUTATIVE T... 1280 0.0 tr|C0E7P9|C0E7P9_9CORY Tax_Id=566549 SubName: Full=Putative unch... 1278 0.0 tr|Q8NRS9|Q8NRS9_CORGL Tax_Id=1718 SubName: Full=Transcription-r... 1276 0.0 >tr|A0R3C5|A0R3C5_MYCS2 Tax_Id=246196 (mfd)SubName: Full=Transcription-repair coupling factor;[Mycobacterium smegmatis] Length = 1215 Score = 2195 bits (5688), Expect = 0.0 Identities = 1131/1215 (93%), Positives = 1131/1215 (93%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPGHTSVQTPIAGLVELALSDPSLQDVI VGP QNG Sbjct: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIRRAADRPADLALVGPASARVLVAAALAQNG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVG Sbjct: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGARLMLLRRLAR 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD Sbjct: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV Sbjct: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE Sbjct: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALGAS 360 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALGAS Sbjct: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALGAS 360 Query: 361 GFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRAHVA 420 GFVTF GGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRAHVA Sbjct: 361 GFVTFEEAREAAREGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRAHVA 420 Query: 421 TGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPGAN 480 TGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPGAN Sbjct: 421 TGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPGAN 480 Query: 481 LVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVG 540 LVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVG Sbjct: 481 LVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVG 540 Query: 541 GARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANTKTKAR 600 GARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANTKTKAR Sbjct: 541 GARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANTKTKAR 600 Query: 601 RAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKSDMEK 660 RAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKSDMEK Sbjct: 601 RAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKSDMEK 660 Query: 661 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFPV 720 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFPV Sbjct: 661 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFPV 720 Query: 721 TVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGVEH 780 TVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGVEH Sbjct: 721 TVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGVEH 780 Query: 781 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV Sbjct: 781 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 Query: 841 AAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKTVEGFW 900 AAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKTVEGFW Sbjct: 841 AAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKTVEGFW 900 Query: 901 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP Sbjct: 901 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 Query: 961 NKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL 1020 NKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL Sbjct: 961 NKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL 1020 Query: 1021 VGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXXXXXXXXXX 1080 VGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGS Sbjct: 1021 VGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSDRLRLEAYRRLAAAADD 1080 Query: 1081 XXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRLSPMVLPDS 1140 IDRYGPLPEPAQ EFGITEIGAVSASTVRLSPMVLPDS Sbjct: 1081 DAVASVVDELIDRYGPLPEPAQRLVAVARLRLLCREFGITEIGAVSASTVRLSPMVLPDS 1140 Query: 1141 AQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLVLVLNGKGQGD 1200 AQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLVLVLNGKGQGD Sbjct: 1141 AQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLVLVLNGKGQGD 1200 Query: 1201 VDMSKFSNPAGEAKR 1215 VDMSKFSNPAGEAKR Sbjct: 1201 VDMSKFSNPAGEAKR 1215 >tr|A3Q5G2|A3Q5G2_MYCSJ Tax_Id=164757 SubName: Full=Transcription-repair coupling factor;[Mycobacterium sp.] Length = 1211 Score = 1927 bits (4991), Expect = 0.0 Identities = 981/1206 (81%), Positives = 1043/1206 (86%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MT G VQTPIAGL+ELAL DP L D+ VGP Q G Sbjct: 1 MTVSGLHHVQTPIAGLIELALRDPCLADLSARAADKPDDLAMVGPASARLLVTAALAQAG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+LTAELRGV GDS ALFPSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLTAELRGVIGDSAALFPSWETLPHERLSPGVDTVGARMMLLRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PLRVVVTT RSL+QPMAP L ++EPVTL+VGAEM+F+ V+ RLVDL+YTR D Sbjct: 121 PDDARLGPPLRVVVTTARSLVQPMAPGLAEVEPVTLTVGAEMDFDGVIKRLVDLAYTRCD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MV KRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMR FA+ADQRSIPE+ V TV+AV Sbjct: 181 MVAKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRMFAVADQRSIPEIEVDTVIAV 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 PCRELLM+D+VR RAA LAAEHPT EN+VPG+VPDMLAKLAEGIPVDGMEALLPLL P + Sbjct: 241 PCRELLMSDEVRSRAAVLAAEHPTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLLRPTD 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALGAS 360 L+ HLP+GAP+LVCDPEKVRTRA DLIKTGREFLEASWSTAAVGG APIDLEA+GAS Sbjct: 301 LAMLSDHLPDGAPILVCDPEKVRTRAGDLIKTGREFLEASWSTAAVGGAAPIDLEAMGAS 360 Query: 361 GFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRAHVA 420 GF+ F GGHPWWTLSQLSDE A+ELDIRSAPSARG Q ++EEIFAMLRAHVA Sbjct: 361 GFLGFEEVRTGARAGGHPWWTLSQLSDEKAIELDIRSAPSARGQQSSVEEIFAMLRAHVA 420 Query: 421 TGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPGAN 480 TGGY AVVTPG GTAHRVVEQLGE DT AT+LEPG PKAGVVGVLKGPL GVVLPGAN Sbjct: 421 TGGYGAVVTPGAGTAHRVVEQLGENDTPATMLEPGEEPKAGVVGVLKGPLHDGVVLPGAN 480 Query: 481 LVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVG 540 LVI+TE DLTG+RVTA EG++LAAKRRNVVDPLALTAGDLVVHDQHGIG+FVEMTERVVG Sbjct: 481 LVIVTEADLTGSRVTATEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERVVG 540 Query: 541 GARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANTKTKAR 600 GARREYLVLEYASSKRGGG+D+LYVPMDSLDQLSRYVGGEAPSLS+LGGSDWANTKTKAR Sbjct: 541 GARREYLVLEYASSKRGGGSDRLYVPMDSLDQLSRYVGGEAPSLSKLGGSDWANTKTKAR 600 Query: 601 RAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKSDMEK 660 RAVREIASELVALYAKRQ+APGHAF PDTPWQ EMEDAFGFTET+DQLTAI+EVK+DMEK Sbjct: 601 RAVREIASELVALYAKRQAAPGHAFSPDTPWQNEMEDAFGFTETVDQLTAIEEVKADMEK 660 Query: 661 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFPV 720 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT RMAGFPV Sbjct: 661 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARMAGFPV 720 Query: 721 TVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGVEH 780 TVKGLSRFTDPAESRA +EG+KDGSVD+VIGTHRLLQTGV WKDLGLIIVDEEQRFGVEH Sbjct: 721 TVKGLSRFTDPAESRAALEGMKDGSVDIVIGTHRLLQTGVVWKDLGLIIVDEEQRFGVEH 780 Query: 781 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP DDKQV Sbjct: 781 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPQDDKQV 840 Query: 841 AAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKTVEGFW 900 AAALRRELLRDGQAFYIHNRVRTID+AA+++ LVPEARVVVAHGQM EE LE+TVEGFW Sbjct: 841 AAALRRELLRDGQAFYIHNRVRTIDQAASKIAALVPEARVVVAHGQMPEELLERTVEGFW 900 Query: 901 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP Sbjct: 901 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 Query: 961 NKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL 1020 +PLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL Sbjct: 961 EQPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL 1020 Query: 1021 VGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXXXXXXXXXX 1080 VGEAVEAYRAAADGKTVATPQE KDVRIDLPVDA+LPP+YIGS Sbjct: 1021 VGEAVEAYRAAADGKTVATPQETKDVRIDLPVDANLPPDYIGSDRLRLEAYRRLAAAQDD 1080 Query: 1081 XXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRLSPMVLPDS 1140 +DRYGPLPEPAQ E+GIT++ +VSASTV+LSPM LPDS Sbjct: 1081 AGVDAVIDELVDRYGPLPEPAQRLVGVARLRLVCREYGITDVSSVSASTVKLSPMELPDS 1140 Query: 1141 AQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLVLVLNGKGQGD 1200 AQLRLKRMYPG YRATT TV VP+PRA + VGAPRIRD ELV VAGLVL LNGK Q Sbjct: 1141 AQLRLKRMYPGATYRATTGTVSVPIPRATDSVGAPRIRDAELVAMVAGLVLALNGKPQAQ 1200 Query: 1201 VDMSKF 1206 +D +KF Sbjct: 1201 IDTAKF 1206 >tr|Q1B434|Q1B434_MYCSS Tax_Id=164756 SubName: Full=Transcription-repair coupling factor;[Mycobacterium sp.] Length = 1211 Score = 1924 bits (4984), Expect = 0.0 Identities = 980/1206 (81%), Positives = 1042/1206 (86%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MT G VQTPIAGL+ELAL DP L D+ VGP Q G Sbjct: 1 MTVSGLHHVQTPIAGLIELALRDPCLADLSARAADKPDDLAMVGPASARLLVTAALAQAG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+LTAELRGV GDS ALFPSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLTAELRGVIGDSAALFPSWETLPHERLSPGVDTVGARMMLLRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PLRVVVTT RSL+QPMAP L ++EPVTL+VGAEM+F+ V+ RLVDL+YTR D Sbjct: 121 PDDARLGPPLRVVVTTARSLVQPMAPGLAEVEPVTLTVGAEMDFDGVIKRLVDLAYTRCD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MV KRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMR FA+ADQRSIPE+ V TV+AV Sbjct: 181 MVAKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRMFAVADQRSIPEIEVDTVIAV 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 PCRELLM+D+VR RAA LAAEHPT EN+VPG+VPDMLAKLAEGIPVDGMEALLPLL P + Sbjct: 241 PCRELLMSDEVRSRAAVLAAEHPTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLLRPTD 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALGAS 360 L+ HLP+GAP+LVCDPEKVRTRA DLIKTGREFLEASWSTAAVGG APIDLEA+GAS Sbjct: 301 LAMLSDHLPDGAPILVCDPEKVRTRAGDLIKTGREFLEASWSTAAVGGAAPIDLEAMGAS 360 Query: 361 GFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRAHVA 420 GF+ F GGHPWWTLSQLSDE A+ELDIRSAPSARG Q ++EEIFAMLRAHVA Sbjct: 361 GFLGFEEVRTGARAGGHPWWTLSQLSDEKAIELDIRSAPSARGQQSSVEEIFAMLRAHVA 420 Query: 421 TGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPGAN 480 TGGY AVVTPG GTAHRVVEQLGE DT AT+LEPG PKAGVVGVLKGPL GVVLPGAN Sbjct: 421 TGGYGAVVTPGAGTAHRVVEQLGENDTPATMLEPGEEPKAGVVGVLKGPLHDGVVLPGAN 480 Query: 481 LVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVG 540 LVI+TE DLTG+RVTA EG++LAAKRRNVVDPLALTAGDLVVHDQHGIG+FVEMTERVVG Sbjct: 481 LVIVTEADLTGSRVTATEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERVVG 540 Query: 541 GARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANTKTKAR 600 GARREYLVLEYASSKRGGG+D+LYVPMDSLDQLSRYVGGEAPSLS+LGGSDWANTKTKAR Sbjct: 541 GARREYLVLEYASSKRGGGSDRLYVPMDSLDQLSRYVGGEAPSLSKLGGSDWANTKTKAR 600 Query: 601 RAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKSDMEK 660 RAVREIASELVALYAKRQ+APGHAF PDTPWQ EMEDAFGFTET+DQLTAI+EVK+DMEK Sbjct: 601 RAVREIASELVALYAKRQAAPGHAFSPDTPWQNEMEDAFGFTETVDQLTAIEEVKADMEK 660 Query: 661 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFPV 720 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT RMAGFPV Sbjct: 661 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARMAGFPV 720 Query: 721 TVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGVEH 780 TVKGLSRFTDPAESRA +EG+KDGSVD+VIGTHRLLQTGV WKDLGLIIVDEEQRFGVEH Sbjct: 721 TVKGLSRFTDPAESRAALEGMKDGSVDIVIGTHRLLQTGVVWKDLGLIIVDEEQRFGVEH 780 Query: 781 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP DDKQV Sbjct: 781 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPQDDKQV 840 Query: 841 AAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKTVEGFW 900 AAALRRELLRDGQAFYIHNRVRTID+AA+++ LVPEARVVVAHGQM EE LE+TVEGFW Sbjct: 841 AAALRRELLRDGQAFYIHNRVRTIDQAASKIAALVPEARVVVAHGQMPEELLERTVEGFW 900 Query: 901 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP Sbjct: 901 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 Query: 961 NKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL 1020 +PLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL Sbjct: 961 EQPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL 1020 Query: 1021 VGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXXXXXXXXXX 1080 VGEAVEAYRAAADGKTVATPQE KDVRIDLPVDA+LPP+YIGS Sbjct: 1021 VGEAVEAYRAAADGKTVATPQETKDVRIDLPVDANLPPDYIGSDRLRLEAYRRLAAAQDD 1080 Query: 1081 XXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRLSPMVLPDS 1140 +DRYGPLPEPAQ E+GIT++ +VSASTV+LSPM LPDS Sbjct: 1081 AGVDAVIDELVDRYGPLPEPAQRLVGVARLRLVCREYGITDVSSVSASTVKLSPMELPDS 1140 Query: 1141 AQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLVLVLNGKGQGD 1200 A LRLKRMYPG YRATT TV VP+PRA + VGAPRIRD ELV VAGLVL LNGK Q Sbjct: 1141 ALLRLKRMYPGATYRATTGTVSVPIPRATDSVGAPRIRDAELVAMVAGLVLALNGKPQAQ 1200 Query: 1201 VDMSKF 1206 +D +KF Sbjct: 1201 IDTAKF 1206 >tr|A1UL14|A1UL14_MYCSK Tax_Id=189918 SubName: Full=Transcription-repair coupling factor;[Mycobacterium sp.] Length = 1211 Score = 1924 bits (4984), Expect = 0.0 Identities = 980/1206 (81%), Positives = 1042/1206 (86%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MT G VQTPIAGL+ELAL DP L D+ VGP Q G Sbjct: 1 MTVSGLHHVQTPIAGLIELALRDPCLADLSARAADKPDDLAMVGPASARLLVTAALAQAG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+LTAELRGV GDS ALFPSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLTAELRGVIGDSAALFPSWETLPHERLSPGVDTVGARMMLLRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PLRVVVTT RSL+QPMAP L ++EPVTL+VGAEM+F+ V+ RLVDL+YTR D Sbjct: 121 PDDARLGPPLRVVVTTARSLVQPMAPGLAEVEPVTLTVGAEMDFDGVIKRLVDLAYTRCD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MV KRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMR FA+ADQRSIPE+ V TV+AV Sbjct: 181 MVAKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRMFAVADQRSIPEIEVDTVIAV 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 PCRELLM+D+VR RAA LAAEHPT EN+VPG+VPDMLAKLAEGIPVDGMEALLPLL P + Sbjct: 241 PCRELLMSDEVRSRAAVLAAEHPTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLLRPTD 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALGAS 360 L+ HLP+GAP+LVCDPEKVRTRA DLIKTGREFLEASWSTAAVGG APIDLEA+GAS Sbjct: 301 LAMLSDHLPDGAPILVCDPEKVRTRAGDLIKTGREFLEASWSTAAVGGAAPIDLEAMGAS 360 Query: 361 GFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRAHVA 420 GF+ F GGHPWWTLSQLSDE A+ELDIRSAPSARG Q ++EEIFAMLRAHVA Sbjct: 361 GFLGFEEVRTGARAGGHPWWTLSQLSDEKAIELDIRSAPSARGQQSSVEEIFAMLRAHVA 420 Query: 421 TGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPGAN 480 TGGY AVVTPG GTAHRVVEQLGE DT AT+LEPG PKAGVVGVLKGPL GVVLPGAN Sbjct: 421 TGGYGAVVTPGAGTAHRVVEQLGENDTPATMLEPGEEPKAGVVGVLKGPLHDGVVLPGAN 480 Query: 481 LVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVG 540 LVI+TE DLTG+RVTA EG++LAAKRRNVVDPLALTAGDLVVHDQHGIG+FVEMTERVVG Sbjct: 481 LVIVTEADLTGSRVTATEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERVVG 540 Query: 541 GARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANTKTKAR 600 GARREYLVLEYASSKRGGG+D+LYVPMDSLDQLSRYVGGEAPSLS+LGGSDWANTKTKAR Sbjct: 541 GARREYLVLEYASSKRGGGSDRLYVPMDSLDQLSRYVGGEAPSLSKLGGSDWANTKTKAR 600 Query: 601 RAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKSDMEK 660 RAVREIASELVALYAKRQ+APGHAF PDTPWQ EMEDAFGFTET+DQLTAI+EVK+DMEK Sbjct: 601 RAVREIASELVALYAKRQAAPGHAFSPDTPWQNEMEDAFGFTETVDQLTAIEEVKADMEK 660 Query: 661 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFPV 720 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT RMAGFPV Sbjct: 661 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARMAGFPV 720 Query: 721 TVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGVEH 780 TVKGLSRFTDPAESRA +EG+KDGSVD+VIGTHRLLQTGV WKDLGLIIVDEEQRFGVEH Sbjct: 721 TVKGLSRFTDPAESRAALEGMKDGSVDIVIGTHRLLQTGVVWKDLGLIIVDEEQRFGVEH 780 Query: 781 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP DDKQV Sbjct: 781 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPQDDKQV 840 Query: 841 AAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKTVEGFW 900 AAALRRELLRDGQAFYIHNRVRTID+AA+++ LVPEARVVVAHGQM EE LE+TVEGFW Sbjct: 841 AAALRRELLRDGQAFYIHNRVRTIDQAASKIAALVPEARVVVAHGQMPEELLERTVEGFW 900 Query: 901 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP Sbjct: 901 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 Query: 961 NKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL 1020 +PLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL Sbjct: 961 EQPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL 1020 Query: 1021 VGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXXXXXXXXXX 1080 VGEAVEAYRAAADGKTVATPQE KDVRIDLPVDA+LPP+YIGS Sbjct: 1021 VGEAVEAYRAAADGKTVATPQETKDVRIDLPVDANLPPDYIGSDRLRLEAYRRLAAAQDD 1080 Query: 1081 XXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRLSPMVLPDS 1140 +DRYGPLPEPAQ E+GIT++ +VSASTV+LSPM LPDS Sbjct: 1081 AGVDAVIDELVDRYGPLPEPAQRLVGVARLRLVCREYGITDVSSVSASTVKLSPMELPDS 1140 Query: 1141 AQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLVLVLNGKGQGD 1200 A LRLKRMYPG YRATT TV VP+PRA + VGAPRIRD ELV VAGLVL LNGK Q Sbjct: 1141 ALLRLKRMYPGATYRATTGTVSVPIPRATDSVGAPRIRDAELVAMVAGLVLALNGKPQAQ 1200 Query: 1201 VDMSKF 1206 +D +KF Sbjct: 1201 IDTAKF 1206 >tr|A1TEF0|A1TEF0_MYCVP Tax_Id=350058 SubName: Full=Transcription-repair coupling factor;[Mycobacterium vanbaalenii] Length = 1212 Score = 1896 bits (4912), Expect = 0.0 Identities = 961/1212 (79%), Positives = 1039/1212 (85%), Gaps = 2/1212 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MT G V TPIAGLV+LAL DP+LQ++ VGP Q G Sbjct: 1 MTVSGTLHVHTPIAGLVDLALRDPALQEIARRAGDRPADLNLVGPASARVFVASALAQPG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 LLVV ATGREAD+LTAELRGVFGD+VALFPSWETLPHERLSPGV+TVG Sbjct: 61 LLLVVTATGREADDLTAELRGVFGDAVALFPSWETLPHERLSPGVDTVGARMMLLRRLTH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PLR+VVTT RSLLQPMAPDL +++PVTL+VG E +F+ VVARLVDL+Y+RVD Sbjct: 121 PDDARLGPPLRIVVTTARSLLQPMAPDLAEVDPVTLTVGGEADFDAVVARLVDLAYSRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDE+SEMR F++ADQRSIPE+ + T++AV Sbjct: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEIEIDTLIAV 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 PCRELL+T +VR+RAAALA+EHP EN+V G+VPDMLAKLAEGIPVDGMEALLPLL P + Sbjct: 241 PCRELLLTAEVRDRAAALASEHPVLENSVTGSVPDMLAKLAEGIPVDGMEALLPLLRPSD 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALGAS 360 TL HLPEG P+LVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGD PID+EALG S Sbjct: 301 FATLPDHLPEGTPLLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDVPIDIEALGVS 360 Query: 361 GFVTFXXXXXXXXXGGHPWWTLSQLSDES--AVELDIRSAPSARGSQHNLEEIFAMLRAH 418 G+V + GGHPWWTLSQL + + LDIR APSARG QHNL+EIFAMLRAH Sbjct: 361 GYVGYGDARDAARAGGHPWWTLSQLDSGAGESTALDIRPAPSARGQQHNLDEIFAMLRAH 420 Query: 419 VATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPG 478 VATGG+ VVTPG GTA RVVEQL E+D AT+LEPG P GVVGV+KGPL GVV+PG Sbjct: 421 VATGGFGVVVTPGSGTAMRVVEQLSESDIPATVLEPGAVPGEGVVGVIKGPLHDGVVIPG 480 Query: 479 ANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERV 538 ANLV+ITETDLTGNR A EG+KLAAKRRNVVDPLALTAGDLVVHDQHGIG+FVEMTERV Sbjct: 481 ANLVVITETDLTGNRAAATEGKKLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERV 540 Query: 539 VGGARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANTKTK 598 +GGARREYLVLEYAS+KRGGG+D+LYVPMDSLDQLSRYVGGEAP+LSRLGGSDWANTKTK Sbjct: 541 IGGARREYLVLEYASAKRGGGSDRLYVPMDSLDQLSRYVGGEAPTLSRLGGSDWANTKTK 600 Query: 599 ARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKSDM 658 AR+AVREIA+ELVALYAKRQ++ GHAF PDTPWQ EMEDAFGFTET+DQLTAI EVKSDM Sbjct: 601 ARKAVREIAAELVALYAKRQASAGHAFAPDTPWQREMEDAFGFTETVDQLTAITEVKSDM 660 Query: 659 EKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGF 718 EKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRM GF Sbjct: 661 EKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMTGF 720 Query: 719 PVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGV 778 PVTVKGLSRFTDPAESRA IEG+KDGSVD+VIGTHRLLQTGVTWKDLGL+IVDEEQRFGV Sbjct: 721 PVTVKGLSRFTDPAESRATIEGMKDGSVDIVIGTHRLLQTGVTWKDLGLVIVDEEQRFGV 780 Query: 779 EHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK 838 EHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK Sbjct: 781 EHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK 840 Query: 839 QVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKTVEG 898 QVAAALRRE+LRDGQAFYIHNRVRTID AAA+VRQLVPEARVVVAHGQM EE LEKTVEG Sbjct: 841 QVAAALRREMLRDGQAFYIHNRVRTIDSAAAKVRQLVPEARVVVAHGQMPEEQLEKTVEG 900 Query: 899 FWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY 958 FWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY Sbjct: 901 FWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY 960 Query: 959 PPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYV 1018 PP PLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYV Sbjct: 961 PPEVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYV 1020 Query: 1019 RLVGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXXXXXXXX 1078 RLVGEAVEAYRAAADGKTVA P+E KDVRIDLPVDAHLPP+YIGS Sbjct: 1021 RLVGEAVEAYRAAADGKTVAAPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEAYRRLAAAP 1080 Query: 1079 XXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRLSPMVLP 1138 +DRYGPLPEPAQ G+TEIGA SA+T+R+SPM LP Sbjct: 1081 DDAAVDAVIEELVDRYGPLPEPAQRLVAVARLRLLARAHGVTEIGAPSATTLRISPMTLP 1140 Query: 1139 DSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLVLVLNGKGQ 1198 DSAQLRLKR+Y G +YRATTSTVQVP+PRAG GVG+PRIRDLELV +VAGL+L ++GK Sbjct: 1141 DSAQLRLKRLYSGANYRATTSTVQVPVPRAGSGVGSPRIRDLELVAFVAGLLLAIDGKPG 1200 Query: 1199 GDVDMSKFSNPA 1210 +VD++KF A Sbjct: 1201 EEVDITKFGGGA 1212 >tr|A4T6M5|A4T6M5_MYCGI Tax_Id=350054 SubName: Full=Transcription-repair coupling factor;[Mycobacterium gilvum] Length = 1198 Score = 1880 bits (4870), Expect = 0.0 Identities = 962/1197 (80%), Positives = 1026/1197 (85%), Gaps = 5/1197 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTA G V TPIAGLV LAL DPSLQ++ VGP Q G Sbjct: 1 MTASGTLHVHTPIAGLVGLALRDPSLQEIARRGVDRPADLHFVGPASARLFVASALAQAG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 LLVV ATGREAD+LTAELRGVFGD+VA+FPSWETLPHERLSPGV+TVG Sbjct: 61 LLLVVTATGREADDLTAELRGVFGDAVAMFPSWETLPHERLSPGVDTVGARMMLLRRLAF 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PLRVVVTT RSLLQPMAPDL I+PVTL+VG E +F++ VARLVDL+YTRVD Sbjct: 121 PDDARLGEPLRVVVTTARSLLQPMAPDLARIDPVTLTVGGEADFDETVARLVDLAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVGKRGEFAVRGGILD+FPPTAEHPVRVEFWGDEISEMR F++ADQRSIPE+ + TV+AV Sbjct: 181 MVGKRGEFAVRGGILDLFPPTAEHPVRVEFWGDEISEMRMFSVADQRSIPEIEIDTVIAV 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 PCRELL+T DVRERAAALA EHP +EN VPG+VPDMLA+LAEGIPVDGMEALLPLL P + Sbjct: 241 PCRELLLTADVRERAAALAEEHPVSENNVPGSVPDMLARLAEGIPVDGMEALLPLLRPSD 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALGAS 360 TL HLPEG P+LVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGD PIDLEALGAS Sbjct: 301 FATLPDHLPEGTPLLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDVPIDLEALGAS 360 Query: 361 GFVTFXXXXXXXXXGGHPWWTLSQLSDES--AVELDIRSAPSARGSQHNLEEIFAMLRAH 418 G+VT+ GGH WWTLSQL + + LDIR APSARG QHNLEEIFAMLRAH Sbjct: 361 GYVTYNEARDAARDGGHGWWTLSQLDSGAGESTALDIRPAPSARG-QHNLEEIFAMLRAH 419 Query: 419 VATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPG 478 VATGG VVTPG GT RVVEQL E+DT A ILEPG APK GVVGVLKGPL GVV+PG Sbjct: 420 VATGGCGVVVTPGAGTCQRVVEQLSESDTPAMILEPGMAPKDGVVGVLKGPLHDGVVIPG 479 Query: 479 ANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERV 538 ANLV+ITETDLTGNR A EG+KLAAKRRNVVDPLALTAGDLVVHDQHGIG+FVEMTERV Sbjct: 480 ANLVVITETDLTGNRAAATEGKKLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERV 539 Query: 539 VGGARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANTKTK 598 +GGARREYLVLEYAS+KRGGG D+LYVPMDSLDQLSRYVGGEAP+LSRLGGSDWANTKTK Sbjct: 540 IGGARREYLVLEYASAKRGGGADRLYVPMDSLDQLSRYVGGEAPTLSRLGGSDWANTKTK 599 Query: 599 ARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKSDM 658 ARRAVREIA+ELV LYAKRQ++PGHAF PDTPWQ EMEDAFGFTET+DQLTAI EVKSDM Sbjct: 600 ARRAVREIAAELVTLYAKRQASPGHAFSPDTPWQVEMEDAFGFTETVDQLTAITEVKSDM 659 Query: 659 EKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGF 718 EKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT RM GF Sbjct: 660 EKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARMTGF 719 Query: 719 PVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGV 778 PVTV+GLSRFTDPA SRA +EG+KDGSVD+VIGTHRL+QTGVTWKDLGL+IVDEEQRFGV Sbjct: 720 PVTVRGLSRFTDPASSRATLEGMKDGSVDIVIGTHRLIQTGVTWKDLGLVIVDEEQRFGV 779 Query: 779 EHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK 838 EHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVG HDDK Sbjct: 780 EHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGQHDDK 839 Query: 839 QVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKTVEG 898 QVAAALRRE+LRDGQAFYIHNRVRTID AAA++RQLVPEARVVVAHGQM EE LEKTVEG Sbjct: 840 QVAAALRREMLRDGQAFYIHNRVRTIDSAAAKIRQLVPEARVVVAHGQMPEEQLEKTVEG 899 Query: 899 FWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY 958 FWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY Sbjct: 900 FWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY 959 Query: 959 PPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYV 1018 PP PLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYV Sbjct: 960 PPEVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYV 1019 Query: 1019 RLVGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXXXXXXXX 1078 RLVGEAVEAYRAAADGKTVATP+E KDVRIDLPVDAHLPP+YIGS Sbjct: 1020 RLVGEAVEAYRAAADGKTVATPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEGYRRLAAAP 1079 Query: 1079 XXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAV--SASTVRLSPMV 1136 +DRYGPLPEPA+ GITE+GAV SAST+R+SP+ Sbjct: 1080 DDAAVDAVVEELVDRYGPLPEPAELLVAVARLRLLARAAGITEVGAVSASASTLRISPLT 1139 Query: 1137 LPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLVLVL 1193 LPDSAQLRLKR+Y G +YRATTSTVQVP+PRAG+GVGAPRIRD ELV +VAGL+ VL Sbjct: 1140 LPDSAQLRLKRLYSGANYRATTSTVQVPIPRAGQGVGAPRIRDRELVDFVAGLIKVL 1196 >tr|B2HDI8|B2HDI8_MYCMM Tax_Id=216594 (mfd)SubName: Full=Transcription-repair coupling factor Mfd (TrcF);[Mycobacterium marinum] Length = 1222 Score = 1826 bits (4729), Expect = 0.0 Identities = 925/1207 (76%), Positives = 1018/1207 (84%), Gaps = 1/1207 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG S TPIAGLV+LAL+ P+ Q +I VGP Q G Sbjct: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD++TAELRGVFG++VALFPSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGARLLLLRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 P+D LG PLRVVVT RSLLQPM P L EPV+LSVG E+ F++V+ARLV+L+YTRVD Sbjct: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ V T+VAV Sbjct: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 CRELL+T+DVR RAAALAA+HP +ENTV G+V DMLAKLAEGIP DGMEALLP+L P + Sbjct: 241 ACRELLLTEDVRARAAALAAQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALGAS 360 LT L EG PVLVCDPEKVRTRAADLIKTGREFLEASWS AA+G DAP+D+EALG S Sbjct: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGS 360 Query: 361 GFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRAHVA 420 GF GHPWWTLSQLS+ESA EL++R+APSARG Q ++++IFAMLRAHV+ Sbjct: 361 GFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVS 420 Query: 421 TGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPGAN 480 TGGYA +V PG GTAHR+VE+L E+D A +LEPG APK GVVGVLKGPL GV++PGAN Sbjct: 421 TGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN 480 Query: 481 LVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVG 540 LV++TET+LTGNR TA EG++LAAKRRN VDPLALTAGDLVVHDQHGIG+FVEM ER VG Sbjct: 481 LVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG 540 Query: 541 GARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANTKTKAR 600 GARREYLVLEYAS+KRGGG+DKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDW NTKTKAR Sbjct: 541 GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKAR 600 Query: 601 RAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKSDMEK 660 +AVREIA ELVALYAKRQ++PGHAF PDTPWQAEMEDAFGFTET+DQLTAI EVK DMEK Sbjct: 601 KAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEK 660 Query: 661 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFPV 720 +PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT+RMAGFPV Sbjct: 661 SIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPV 720 Query: 721 TVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGVEH 780 TVKGLSRFTDPAESR VIEG+ DGSVDVVIGTHRLLQTGV WKDLGL++VDEEQRFGVEH Sbjct: 721 TVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEH 780 Query: 781 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 KEHIKS+R+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV Sbjct: 781 KEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 Query: 841 AAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKTVEGFW 900 AAALRRELLRDGQAFY+HNRV +ID+ AAR+R+LVPEARVVVAHGQM E+ LE+TV+GFW Sbjct: 841 AAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGFW 900 Query: 901 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 RE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP Sbjct: 901 QREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 Query: 961 NKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL 1020 PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGFDLYVRL Sbjct: 961 QAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRL 1020 Query: 1021 VGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXXXXXXXXXX 1080 VGEAVEAYRAAADGKTV TP+E KDVRIDLPVDAHLPP+YIGS Sbjct: 1021 VGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEAYRRLAAATSD 1080 Query: 1081 XXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRLSPMVLPDS 1140 IDRYG LPEPA GIT++ A S++TVRL+PM LPDS Sbjct: 1081 SGVAAVVDELIDRYGALPEPALRLVAVARLRLLCRASGITDVSAPSSATVRLAPMDLPDS 1140 Query: 1141 AQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLVLVLNGKGQGD 1200 AQ+RLKRMYPGGHYRATTSTVQVP+PR G GVGAPRIRD+ELVQ VA LV L GK Q D Sbjct: 1141 AQVRLKRMYPGGHYRATTSTVQVPIPRDG-GVGAPRIRDVELVQMVANLVTALAGKPQQD 1199 Query: 1201 VDMSKFS 1207 + + S Sbjct: 1200 IGRTSLS 1206 >tr|Q741V0|Q741V0_MYCPA Tax_Id=1770 (mfd)SubName: Full=Mfd;[Mycobacterium paratuberculosis] Length = 1221 Score = 1819 bits (4711), Expect = 0.0 Identities = 929/1206 (77%), Positives = 1017/1206 (84%), Gaps = 6/1206 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG +TPIAGLVELAL+ P+ Q +I VGP + G Sbjct: 1 MTAPGAARPETPIAGLVELALTAPTFQQLIDTAAASPADLSLVGPASTRLFVASALARLG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+LTAELRGV GD+VA+FPSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLTAELRGVVGDAVAVFPSWETLPHERLSPGVDTVGARLTVLRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PL+VVVT RSLLQPM P L +EPVTLSVG E+EFE V+ARLV+L+Y+RVD Sbjct: 121 PDDARLGPPLQVVVTAVRSLLQPMTPQLGLVEPVTLSVGQEIEFEHVIARLVELAYSRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILDVFPPTAEHPVRVEFWGDE+SEMR F++ADQRSIPE+ V TV++V Sbjct: 181 MVGRRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEIAVDTVISV 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 PCRELL+T+DVR RAA LAA+HP +E + G+V DMLAK+A+GI VDGMEALLP+L P + Sbjct: 241 PCRELLLTEDVRARAAELAAQHPASEPAITGSVSDMLAKIADGIAVDGMEALLPVLRPGK 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDAPIDLEAL 357 LT L + PVL+CDPEK+RTRAADLIKTGREFLEASWS AA+G APID+E L Sbjct: 301 QVLLTDQLADRTPVLLCDPEKIRTRAADLIKTGREFLEASWSVAALGTLENQAPIDVEQL 360 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRA 417 G SGF GGHPWWTLSQLSDESAVELD+R+APSARG QH+++ IFAMLRA Sbjct: 361 GGSGFAELDEVRAAAVRGGHPWWTLSQLSDESAVELDVRAAPSARGHQHDIDGIFAMLRA 420 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477 HV+TGG+AAVV PG GTAHRVVE+L E DT A +LE G AP+AGVVGVLKGPL G+V+P Sbjct: 421 HVSTGGHAAVVAPGTGTAHRVVERLAECDTPAAMLESGAAPRAGVVGVLKGPLHDGIVIP 480 Query: 478 GANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTER 537 GANLV+ITETDLTG+RV A EG++LAAKRRN VDPLALTAGDLVVHDQHGIG+FVEMTER Sbjct: 481 GANLVVITETDLTGSRVAAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTER 540 Query: 538 VVGGARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANTKT 597 VGGARREYLVLEYASSKRGGG+DKLYVPMDSLDQLSRYVGG+AP+LS+LGGSDWANTKT Sbjct: 541 TVGGARREYLVLEYASSKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDWANTKT 600 Query: 598 KARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKSD 657 KARRAVREIA ELV+LYAKRQ++PGHAF PDTPWQAEMEDAFG+TET+DQLTAI EVKSD Sbjct: 601 KARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAEMEDAFGYTETVDQLTAITEVKSD 660 Query: 658 MEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAG 717 MEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT+RMAG Sbjct: 661 MEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAG 720 Query: 718 FPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFG 777 FPVTVKGLSRFTD AESRAVIEGL DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQRFG Sbjct: 721 FPVTVKGLSRFTDAAESRAVIEGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFG 780 Query: 778 VEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDD 837 VEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDD Sbjct: 781 VEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDD 840 Query: 838 KQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEAR--VVVAHGQMNEETLEKT 895 KQVAAALRRELLRDGQAFY+HNRV +ID AAARVR+LVPEAR VVVAHGQM EE LE+T Sbjct: 841 KQVAAALRRELLRDGQAFYVHNRVSSIDRAAARVRELVPEARVVVVVAHGQMPEERLERT 900 Query: 896 VEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAY 955 V+GFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAY Sbjct: 901 VQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAY 960 Query: 956 FLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFD 1015 FLYPP+ PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGFD Sbjct: 961 FLYPPHAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFD 1020 Query: 1016 LYVRLVGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXXXXX 1075 LYVRLVGEAVEAYRAAADG+TV T +E KDVRIDLPVDAHLPP+YI S Sbjct: 1021 LYVRLVGEAVEAYRAAADGQTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEAYRRLA 1080 Query: 1076 XXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRLSPM 1135 +DRYG LPEPA GITE+ A SA+TVRLSP+ Sbjct: 1081 AAGSDDEIDAVVEELVDRYGALPEPALRLVAVARLRLLCRAAGITEVSAPSAATVRLSPI 1140 Query: 1136 VLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLVLVLNG 1195 LPDSAQ+RLKRMYP YRATTSTVQVP+PRAG GVGAPR+RD+ELVQ VA LV L G Sbjct: 1141 TLPDSAQVRLKRMYPAASYRATTSTVQVPIPRAG-GVGAPRLRDVELVQMVANLVTALQG 1199 Query: 1196 KGQGDV 1201 K Q DV Sbjct: 1200 KPQTDV 1205 >tr|A0PW58|A0PW58_MYCUA Tax_Id=362242 (mfd)SubName: Full=Transcription-repair coupling factor Mfd (TrcF);[Mycobacterium ulcerans] Length = 1222 Score = 1818 bits (4710), Expect = 0.0 Identities = 921/1207 (76%), Positives = 1015/1207 (84%), Gaps = 1/1207 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG S TPIAGLV+LAL+ P+ Q +I VGP Q G Sbjct: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD++TAELRGVFG++VALFPSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGARLLLLRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PLRVVVT RSLLQPM P L EPV+LSVG E+ F++V+ARLV+L+YTRVD Sbjct: 121 PDDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ V T+VAV Sbjct: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 CRELL+T+DVR RAAALAA+HP +ENTV G+V DMLAKLAEGIP DGMEALLP+L P + Sbjct: 241 ACRELLLTEDVRARAAALAAQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALGAS 360 LT L EG PVLVCDPEKVRTRAADLIKTGREFLEASWS AA+G DAP+D+EALG S Sbjct: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGS 360 Query: 361 GFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRAHVA 420 GF GHPWWTLSQLS+ESA EL++R+APSARG Q ++++IFAMLRAHV+ Sbjct: 361 GFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVS 420 Query: 421 TGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPGAN 480 TGGYA +V PG GTAHR+VE+L E+D A +LEPG APK GVVGVLKGPL GV++PGAN Sbjct: 421 TGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN 480 Query: 481 LVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVG 540 LV++TET+LTGNR TA EG++LAAKRRN VDPLALTAGDLVVHDQHGIG+FVEM ER VG Sbjct: 481 LVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG 540 Query: 541 GARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANTKTKAR 600 GARREYLVLEYAS++RGGG+DKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDW NTKTKAR Sbjct: 541 GARREYLVLEYASARRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKAR 600 Query: 601 RAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKSDMEK 660 +AVREIA ELVALYAKRQ++PGHAF PDTPWQAEMEDAFGFTET+DQLTAI EVK DMEK Sbjct: 601 KAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKRDMEK 660 Query: 661 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFPV 720 +PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT+RMAGFPV Sbjct: 661 SIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPV 720 Query: 721 TVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGVEH 780 TVKGLSRFTDPAESR VIEG+ DGSVDVVIGTHRLLQTGV WKDLGL++VDEEQRFGVEH Sbjct: 721 TVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEH 780 Query: 781 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 KEHIKS+R+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV Sbjct: 781 KEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 Query: 841 AAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKTVEGFW 900 AAALRRELLRDGQAFY+HNR +ID+ AAR+R+LVPEARVV AHGQM E+ LE+TV+GFW Sbjct: 841 AAALRRELLRDGQAFYVHNRASSIDDTAARIRKLVPEARVVAAHGQMPEDLLERTVQGFW 900 Query: 901 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 RE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP Sbjct: 901 QREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 Query: 961 NKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL 1020 PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGFDLY+RL Sbjct: 961 QAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYLRL 1020 Query: 1021 VGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXXXXXXXXXX 1080 VGEAVEAYRAAADGK V TP+E KDVRIDLPVDAHLPP+YIGS Sbjct: 1021 VGEAVEAYRAAADGKMVTTPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEAYRRLATATSD 1080 Query: 1081 XXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRLSPMVLPDS 1140 IDRYG LPEPA GIT++ A S++TVRL+PM LPDS Sbjct: 1081 SGVAAVVDELIDRYGALPEPALRLVAVARLRLLCRASGITDVSAPSSATVRLAPMDLPDS 1140 Query: 1141 AQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLVLVLNGKGQGD 1200 AQ+RLKRMYPGGHYRATTSTVQVP+PR G GVGAPRIRD+ELVQ VA LV L GK Q D Sbjct: 1141 AQVRLKRMYPGGHYRATTSTVQVPIPRDG-GVGAPRIRDVELVQMVANLVTALAGKLQQD 1199 Query: 1201 VDMSKFS 1207 + + S Sbjct: 1200 IGRTSLS 1206 >tr|D5PFK2|D5PFK2_9MYCO Tax_Id=525368 (trcF)SubName: Full=Transcription-repair coupling factor; EC=3.6.1.-;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 1201 Score = 1793 bits (4643), Expect = 0.0 Identities = 919/1189 (77%), Positives = 997/1189 (83%), Gaps = 4/1189 (0%) Query: 19 LALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNGPLLVVAATGREADELTAE 78 +AL+ P+ Q +I VGP + GPLLVV ATGREAD+LTAE Sbjct: 1 MALTAPTFQQLIESAADRPPELHLVGPASARLFVASALARLGPLLVVTATGREADDLTAE 60 Query: 79 LRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXXPDDETLGAPLRVVVTTTR 138 LRGVFGD+VA FPSWETLPHERLSPGV+TVG P+D LG PLRVVVT R Sbjct: 61 LRGVFGDAVAAFPSWETLPHERLSPGVDTVGTRLTVLRRLAHPEDARLGPPLRVVVTAVR 120 Query: 139 SLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVDMVGKRGEFAVRGGILDVF 198 SLLQPM P L +EPVT SVG EM FE+VVARLV+L+YTRVDMVG+RGEFAVRGGILDVF Sbjct: 121 SLLQPMTPQLGLVEPVTFSVGQEMAFEEVVARLVELAYTRVDMVGRRGEFAVRGGILDVF 180 Query: 199 PPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAVPCRELLMTDDVRERAAAL 258 PPTAEHPVR+EFWGDE+SEMR FA+ADQRSIPE+ V+TV+AV CRELL++DDVRERAAAL Sbjct: 181 PPTAEHPVRIEFWGDEVSEMRMFAVADQRSIPEIEVETVIAVACRELLLSDDVRERAAAL 240 Query: 259 AAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIEPTTLTRHLPEGAPVLVCD 318 AA H E + G+V DMLAKLAEGI VDGMEALLP+L P E LT L +G PVL+CD Sbjct: 241 AARHSGAEPAITGSVTDMLAKLAEGIAVDGMEALLPVLRPGEHVLLTDQLAQGTPVLLCD 300 Query: 319 PEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALGASGFVTFXXXXXXXXXGGHP 378 PEKVRTRAADLIKTG EFLEASWS AA+G DAP+D+ G SGF GHP Sbjct: 301 PEKVRTRAADLIKTGSEFLEASWSVAALGTDAPVDVAQFGGSGFTELEDVRAAAATSGHP 360 Query: 379 WWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRAHVATGGYAAVVTPGIGTAHRV 438 WWTLSQLSDESAVELDIR+APSARG QH+++EIFAMLRAHV+TGGYAAVV PGIGTAHRV Sbjct: 361 WWTLSQLSDESAVELDIRAAPSARGHQHDIDEIFAMLRAHVSTGGYAAVVAPGIGTAHRV 420 Query: 439 VEQLGEADTAATILEPGTAP---KAGVVGVLKGPLCSGVVLPGANLVIITETDLTGNRVT 495 VE+L ++DT AT+LEP A K GVV VLKGPL GVV+PGANLV+ITETDLTG+R T Sbjct: 421 VERLADSDTPATMLEPDAADTTLKPGVVCVLKGPLHDGVVVPGANLVVITETDLTGSRAT 480 Query: 496 ANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVGGARREYLVLEYASSK 555 A EG++LAAKRRN VDPLALTAGDLVVHDQHGIG+FVEMTER VGGARREYLVLEYASSK Sbjct: 481 AVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTERTVGGARREYLVLEYASSK 540 Query: 556 RGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANTKTKARRAVREIASELVALYA 615 RGGG+DKLYVPMDSLDQLSRYVGG+AP+LS+LGGSDWANTKTKARRAVREIA ELVALYA Sbjct: 541 RGGGSDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDWANTKTKARRAVREIAGELVALYA 600 Query: 616 KRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKSDMEKPVPMDRVICGDVGYG 675 KRQ++PGHAF PDTPWQAEMEDAFGFTET+DQLTAI EVK+DMEKP+PMDRVICGDVGYG Sbjct: 601 KRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKADMEKPIPMDRVICGDVGYG 660 Query: 676 KTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFPVTVKGLSRFTDPAESR 735 KTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT+RMAGFPVTVKGLSRFTD AESR Sbjct: 661 KTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPVTVKGLSRFTDNAESR 720 Query: 736 AVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGVEHKEHIKSMRTHVDVLT 795 AVIEGL DGSVDVVIGTHRLLQTGV WKDLGL++VDEEQRFGVEHKEHIKS+RTHVDVLT Sbjct: 721 AVIEGLADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLT 780 Query: 796 MSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAF 855 MSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP DDKQVAAALRRELLRDGQ F Sbjct: 781 MSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPQDDKQVAAALRRELLRDGQVF 840 Query: 856 YIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKTVEGFWNREYDILVCTTIVET 915 Y+HNRV +ID AAR+R+LVPEARVVVAHGQM EE LE+TV+GFWNREYDILVCTTIVET Sbjct: 841 YVHNRVSSIDRTAARIRELVPEARVVVAHGQMPEERLERTVQGFWNREYDILVCTTIVET 900 Query: 916 GLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPNKPLTETAYDRLATI 975 GLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP+ PLTETAYDRLATI Sbjct: 901 GLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPHAPLTETAYDRLATI 960 Query: 976 AQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGK 1035 AQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGFDLYVRLVGEAVEAYRAAADG+ Sbjct: 961 AQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGQ 1020 Query: 1036 TVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXXXXXXXXXXXXXXXXXXXXIDRYG 1095 TV T +E KDVRIDLPVDAHLPP+YI S +DRYG Sbjct: 1021 TVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAAPDDAAVDAVVEELVDRYG 1080 Query: 1096 PLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRLSPMVLPDSAQLRLKRMYPGGHYR 1155 LPEPA GITE+ A SA+TVRLSPM LPDSAQ+RLKRMYP YR Sbjct: 1081 ALPEPALRLVAVARLRLLCRAAGITEVSAPSAATVRLSPMTLPDSAQVRLKRMYPSASYR 1140 Query: 1156 ATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLVLVLNGKGQGDVDMS 1204 ATTSTVQVP+PR G GVGA RIRD+ELVQ VA LV L GK Q D+ ++ Sbjct: 1141 ATTSTVQVPIPRDG-GVGAARIRDVELVQMVANLVTALQGKPQTDIGIT 1188 >sp|P64326|MFD_MYCTU Tax_Id=1773 (mfd)RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; AltName: Full=ATP-dependent helicase mfd;[Mycobacterium tuberculosis] Length = 1234 Score = 1778 bits (4606), Expect = 0.0 Identities = 909/1224 (74%), Positives = 1013/1224 (82%), Gaps = 11/1224 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG TPIAGLVELALS P+ Q ++ + P + G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+L AELRGVFGD+VAL PSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PL VVVT+ RSLLQPM P L +EP+TL+VG E F+ VVARLV+L+YTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ + T+VA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 CRELL+++DVR RAA LAA HP E+TV G+ DMLAKLAEGI VDGMEA+LP+L Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDAPIDLEAL 357 LT LP+G PVLVCDPEKVRTRAADLI+TGREFLEASWS AA+G AP+D+E L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRA 417 G SGFV GHPWWTLSQLSDESA+ELD+R+APSARG Q +++EIFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477 H+ATGGYAA+V PG GTAHRVVE+L E+DT A +L+PG APK GVVGVL+GPL GV++P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTER 537 GANLV+ITETDLTG+RV+A EG++LAAKRRN+VDPLALTAGDLVVHDQHGIG+FVEM ER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 VVGGARREYLVLEYASSKRGGG---TDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWAN 594 VGGARREYLVLEYAS+KRGGG TDKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDWAN Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEV 654 TKTKARRAVREIA ELV+LYAKRQ++PGHAF PDTPWQAE+EDAFGFTET+DQLTAI+EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 714 K+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQ 774 M+GFPVT+KGLSRFTD AESRAVI+GL DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEK 894 HDDKQ+AAALRRELLRDGQAFY+HNRV +ID AAARVR+LVPEARVVVAHGQM E+ LE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014 YFLYPP PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T +E KDVRIDLPVDAHLPP+YI S Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYG LPEPA+ GIT++ A SA+TV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 RLSP+ LPDSAQ+RLKRMYPG HYRATT+TVQVP+PRAG G+GAPRIRD+ELVQ VA L+ Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVELVQMVADLI 1199 Query: 1191 LVLNGKGQGDVDMSKFSNPAGEAK 1214 L GK + + ++ S P + + Sbjct: 1200 TALAGKPRQHIGITNPSPPGEDGR 1223 >sp|P64327|MFD_MYCBO Tax_Id=1765 (mfd)RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; AltName: Full=ATP-dependent helicase mfd;[Mycobacterium bovis] Length = 1234 Score = 1778 bits (4606), Expect = 0.0 Identities = 909/1224 (74%), Positives = 1013/1224 (82%), Gaps = 11/1224 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG TPIAGLVELALS P+ Q ++ + P + G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+L AELRGVFGD+VAL PSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PL VVVT+ RSLLQPM P L +EP+TL+VG E F+ VVARLV+L+YTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ + T+VA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 CRELL+++DVR RAA LAA HP E+TV G+ DMLAKLAEGI VDGMEA+LP+L Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDAPIDLEAL 357 LT LP+G PVLVCDPEKVRTRAADLI+TGREFLEASWS AA+G AP+D+E L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRA 417 G SGFV GHPWWTLSQLSDESA+ELD+R+APSARG Q +++EIFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477 H+ATGGYAA+V PG GTAHRVVE+L E+DT A +L+PG APK GVVGVL+GPL GV++P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTER 537 GANLV+ITETDLTG+RV+A EG++LAAKRRN+VDPLALTAGDLVVHDQHGIG+FVEM ER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 VVGGARREYLVLEYASSKRGGG---TDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWAN 594 VGGARREYLVLEYAS+KRGGG TDKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDWAN Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEV 654 TKTKARRAVREIA ELV+LYAKRQ++PGHAF PDTPWQAE+EDAFGFTET+DQLTAI+EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 714 K+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQ 774 M+GFPVT+KGLSRFTD AESRAVI+GL DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEK 894 HDDKQ+AAALRRELLRDGQAFY+HNRV +ID AAARVR+LVPEARVVVAHGQM E+ LE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014 YFLYPP PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T +E KDVRIDLPVDAHLPP+YI S Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYG LPEPA+ GIT++ A SA+TV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 RLSP+ LPDSAQ+RLKRMYPG HYRATT+TVQVP+PRAG G+GAPRIRD+ELVQ VA L+ Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVELVQMVADLI 1199 Query: 1191 LVLNGKGQGDVDMSKFSNPAGEAK 1214 L GK + + ++ S P + + Sbjct: 1200 TALAGKPRQHIGITNPSPPGEDGR 1223 >tr|C6DVT3|C6DVT3_MYCTK Tax_Id=478434 SubName: Full=Transcription-repair coupling factor mfd;[Mycobacterium tuberculosis] Length = 1234 Score = 1778 bits (4606), Expect = 0.0 Identities = 909/1224 (74%), Positives = 1013/1224 (82%), Gaps = 11/1224 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG TPIAGLVELALS P+ Q ++ + P + G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+L AELRGVFGD+VAL PSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PL VVVT+ RSLLQPM P L +EP+TL+VG E F+ VVARLV+L+YTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ + T+VA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 CRELL+++DVR RAA LAA HP E+TV G+ DMLAKLAEGI VDGMEA+LP+L Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDAPIDLEAL 357 LT LP+G PVLVCDPEKVRTRAADLI+TGREFLEASWS AA+G AP+D+E L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRA 417 G SGFV GHPWWTLSQLSDESA+ELD+R+APSARG Q +++EIFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477 H+ATGGYAA+V PG GTAHRVVE+L E+DT A +L+PG APK GVVGVL+GPL GV++P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTER 537 GANLV+ITETDLTG+RV+A EG++LAAKRRN+VDPLALTAGDLVVHDQHGIG+FVEM ER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 VVGGARREYLVLEYASSKRGGG---TDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWAN 594 VGGARREYLVLEYAS+KRGGG TDKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDWAN Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEV 654 TKTKARRAVREIA ELV+LYAKRQ++PGHAF PDTPWQAE+EDAFGFTET+DQLTAI+EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 714 K+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQ 774 M+GFPVT+KGLSRFTD AESRAVI+GL DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEK 894 HDDKQ+AAALRRELLRDGQAFY+HNRV +ID AAARVR+LVPEARVVVAHGQM E+ LE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014 YFLYPP PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T +E KDVRIDLPVDAHLPP+YI S Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYG LPEPA+ GIT++ A SA+TV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 RLSP+ LPDSAQ+RLKRMYPG HYRATT+TVQVP+PRAG G+GAPRIRD+ELVQ VA L+ Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVELVQMVADLI 1199 Query: 1191 LVLNGKGQGDVDMSKFSNPAGEAK 1214 L GK + + ++ S P + + Sbjct: 1200 TALAGKPRQHIGITNPSPPGEDGR 1223 >tr|C1AM11|C1AM11_MYCBT Tax_Id=561275 (mfd)SubName: Full=Putative transcription-repair coupling factor;[Mycobacterium bovis] Length = 1234 Score = 1778 bits (4606), Expect = 0.0 Identities = 909/1224 (74%), Positives = 1013/1224 (82%), Gaps = 11/1224 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG TPIAGLVELALS P+ Q ++ + P + G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+L AELRGVFGD+VAL PSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PL VVVT+ RSLLQPM P L +EP+TL+VG E F+ VVARLV+L+YTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ + T+VA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 CRELL+++DVR RAA LAA HP E+TV G+ DMLAKLAEGI VDGMEA+LP+L Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDAPIDLEAL 357 LT LP+G PVLVCDPEKVRTRAADLI+TGREFLEASWS AA+G AP+D+E L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRA 417 G SGFV GHPWWTLSQLSDESA+ELD+R+APSARG Q +++EIFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477 H+ATGGYAA+V PG GTAHRVVE+L E+DT A +L+PG APK GVVGVL+GPL GV++P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTER 537 GANLV+ITETDLTG+RV+A EG++LAAKRRN+VDPLALTAGDLVVHDQHGIG+FVEM ER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 VVGGARREYLVLEYASSKRGGG---TDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWAN 594 VGGARREYLVLEYAS+KRGGG TDKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDWAN Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEV 654 TKTKARRAVREIA ELV+LYAKRQ++PGHAF PDTPWQAE+EDAFGFTET+DQLTAI+EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 714 K+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQ 774 M+GFPVT+KGLSRFTD AESRAVI+GL DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEK 894 HDDKQ+AAALRRELLRDGQAFY+HNRV +ID AAARVR+LVPEARVVVAHGQM E+ LE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014 YFLYPP PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T +E KDVRIDLPVDAHLPP+YI S Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYG LPEPA+ GIT++ A SA+TV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 RLSP+ LPDSAQ+RLKRMYPG HYRATT+TVQVP+PRAG G+GAPRIRD+ELVQ VA L+ Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVELVQMVADLI 1199 Query: 1191 LVLNGKGQGDVDMSKFSNPAGEAK 1214 L GK + + ++ S P + + Sbjct: 1200 TALAGKPRQHIGITNPSPPGEDGR 1223 >tr|A5WL42|A5WL42_MYCTF Tax_Id=336982 SubName: Full=Transcription-repair coupling factor mfd;[Mycobacterium tuberculosis] Length = 1234 Score = 1778 bits (4606), Expect = 0.0 Identities = 909/1224 (74%), Positives = 1013/1224 (82%), Gaps = 11/1224 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG TPIAGLVELALS P+ Q ++ + P + G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+L AELRGVFGD+VAL PSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PL VVVT+ RSLLQPM P L +EP+TL+VG E F+ VVARLV+L+YTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ + T+VA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 CRELL+++DVR RAA LAA HP E+TV G+ DMLAKLAEGI VDGMEA+LP+L Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDAPIDLEAL 357 LT LP+G PVLVCDPEKVRTRAADLI+TGREFLEASWS AA+G AP+D+E L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRA 417 G SGFV GHPWWTLSQLSDESA+ELD+R+APSARG Q +++EIFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477 H+ATGGYAA+V PG GTAHRVVE+L E+DT A +L+PG APK GVVGVL+GPL GV++P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTER 537 GANLV+ITETDLTG+RV+A EG++LAAKRRN+VDPLALTAGDLVVHDQHGIG+FVEM ER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 VVGGARREYLVLEYASSKRGGG---TDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWAN 594 VGGARREYLVLEYAS+KRGGG TDKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDWAN Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEV 654 TKTKARRAVREIA ELV+LYAKRQ++PGHAF PDTPWQAE+EDAFGFTET+DQLTAI+EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 714 K+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQ 774 M+GFPVT+KGLSRFTD AESRAVI+GL DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEK 894 HDDKQ+AAALRRELLRDGQAFY+HNRV +ID AAARVR+LVPEARVVVAHGQM E+ LE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014 YFLYPP PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T +E KDVRIDLPVDAHLPP+YI S Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYG LPEPA+ GIT++ A SA+TV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 RLSP+ LPDSAQ+RLKRMYPG HYRATT+TVQVP+PRAG G+GAPRIRD+ELVQ VA L+ Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVELVQMVADLI 1199 Query: 1191 LVLNGKGQGDVDMSKFSNPAGEAK 1214 L GK + + ++ S P + + Sbjct: 1200 TALAGKPRQHIGITNPSPPGEDGR 1223 >tr|A5U163|A5U163_MYCTA Tax_Id=419947 (mfd)SubName: Full=Transcription-repair coupling factor;[Mycobacterium tuberculosis] Length = 1234 Score = 1778 bits (4606), Expect = 0.0 Identities = 909/1224 (74%), Positives = 1013/1224 (82%), Gaps = 11/1224 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG TPIAGLVELALS P+ Q ++ + P + G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+L AELRGVFGD+VAL PSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PL VVVT+ RSLLQPM P L +EP+TL+VG E F+ VVARLV+L+YTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ + T+VA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 CRELL+++DVR RAA LAA HP E+TV G+ DMLAKLAEGI VDGMEA+LP+L Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDAPIDLEAL 357 LT LP+G PVLVCDPEKVRTRAADLI+TGREFLEASWS AA+G AP+D+E L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRA 417 G SGFV GHPWWTLSQLSDESA+ELD+R+APSARG Q +++EIFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477 H+ATGGYAA+V PG GTAHRVVE+L E+DT A +L+PG APK GVVGVL+GPL GV++P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTER 537 GANLV+ITETDLTG+RV+A EG++LAAKRRN+VDPLALTAGDLVVHDQHGIG+FVEM ER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 VVGGARREYLVLEYASSKRGGG---TDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWAN 594 VGGARREYLVLEYAS+KRGGG TDKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDWAN Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEV 654 TKTKARRAVREIA ELV+LYAKRQ++PGHAF PDTPWQAE+EDAFGFTET+DQLTAI+EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 714 K+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQ 774 M+GFPVT+KGLSRFTD AESRAVI+GL DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEK 894 HDDKQ+AAALRRELLRDGQAFY+HNRV +ID AAARVR+LVPEARVVVAHGQM E+ LE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014 YFLYPP PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T +E KDVRIDLPVDAHLPP+YI S Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYG LPEPA+ GIT++ A SA+TV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 RLSP+ LPDSAQ+RLKRMYPG HYRATT+TVQVP+PRAG G+GAPRIRD+ELVQ VA L+ Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVELVQMVADLI 1199 Query: 1191 LVLNGKGQGDVDMSKFSNPAGEAK 1214 L GK + + ++ S P + + Sbjct: 1200 TALAGKPRQHIGITNPSPPGEDGR 1223 >tr|A1KHF8|A1KHF8_MYCBP Tax_Id=410289 (mfd)SubName: Full=Probable transcription-repair coupling factor mfd;[Mycobacterium bovis] Length = 1234 Score = 1778 bits (4606), Expect = 0.0 Identities = 909/1224 (74%), Positives = 1013/1224 (82%), Gaps = 11/1224 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG TPIAGLVELALS P+ Q ++ + P + G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+L AELRGVFGD+VAL PSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PL VVVT+ RSLLQPM P L +EP+TL+VG E F+ VVARLV+L+YTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ + T+VA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 CRELL+++DVR RAA LAA HP E+TV G+ DMLAKLAEGI VDGMEA+LP+L Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDAPIDLEAL 357 LT LP+G PVLVCDPEKVRTRAADLI+TGREFLEASWS AA+G AP+D+E L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRA 417 G SGFV GHPWWTLSQLSDESA+ELD+R+APSARG Q +++EIFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477 H+ATGGYAA+V PG GTAHRVVE+L E+DT A +L+PG APK GVVGVL+GPL GV++P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTER 537 GANLV+ITETDLTG+RV+A EG++LAAKRRN+VDPLALTAGDLVVHDQHGIG+FVEM ER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 VVGGARREYLVLEYASSKRGGG---TDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWAN 594 VGGARREYLVLEYAS+KRGGG TDKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDWAN Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEV 654 TKTKARRAVREIA ELV+LYAKRQ++PGHAF PDTPWQAE+EDAFGFTET+DQLTAI+EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 714 K+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQ 774 M+GFPVT+KGLSRFTD AESRAVI+GL DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEK 894 HDDKQ+AAALRRELLRDGQAFY+HNRV +ID AAARVR+LVPEARVVVAHGQM E+ LE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014 YFLYPP PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T +E KDVRIDLPVDAHLPP+YI S Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYG LPEPA+ GIT++ A SA+TV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 RLSP+ LPDSAQ+RLKRMYPG HYRATT+TVQVP+PRAG G+GAPRIRD+ELVQ VA L+ Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVELVQMVADLI 1199 Query: 1191 LVLNGKGQGDVDMSKFSNPAGEAK 1214 L GK + + ++ S P + + Sbjct: 1200 TALAGKPRQHIGITNPSPPGEDGR 1223 >tr|D6FFK2|D6FFK2_MYCTU Tax_Id=611303 SubName: Full=Transcription-repair coupling factor mfd;[Mycobacterium tuberculosis CPHL_A] Length = 1234 Score = 1778 bits (4606), Expect = 0.0 Identities = 909/1224 (74%), Positives = 1013/1224 (82%), Gaps = 11/1224 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG TPIAGLVELALS P+ Q ++ + P + G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+L AELRGVFGD+VAL PSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PL VVVT+ RSLLQPM P L +EP+TL+VG E F+ VVARLV+L+YTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ + T+VA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 CRELL+++DVR RAA LAA HP E+TV G+ DMLAKLAEGI VDGMEA+LP+L Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDAPIDLEAL 357 LT LP+G PVLVCDPEKVRTRAADLI+TGREFLEASWS AA+G AP+D+E L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRA 417 G SGFV GHPWWTLSQLSDESA+ELD+R+APSARG Q +++EIFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477 H+ATGGYAA+V PG GTAHRVVE+L E+DT A +L+PG APK GVVGVL+GPL GV++P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTER 537 GANLV+ITETDLTG+RV+A EG++LAAKRRN+VDPLALTAGDLVVHDQHGIG+FVEM ER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 VVGGARREYLVLEYASSKRGGG---TDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWAN 594 VGGARREYLVLEYAS+KRGGG TDKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDWAN Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEV 654 TKTKARRAVREIA ELV+LYAKRQ++PGHAF PDTPWQAE+EDAFGFTET+DQLTAI+EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 714 K+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQ 774 M+GFPVT+KGLSRFTD AESRAVI+GL DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEK 894 HDDKQ+AAALRRELLRDGQAFY+HNRV +ID AAARVR+LVPEARVVVAHGQM E+ LE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014 YFLYPP PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T +E KDVRIDLPVDAHLPP+YI S Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYG LPEPA+ GIT++ A SA+TV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 RLSP+ LPDSAQ+RLKRMYPG HYRATT+TVQVP+PRAG G+GAPRIRD+ELVQ VA L+ Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVELVQMVADLI 1199 Query: 1191 LVLNGKGQGDVDMSKFSNPAGEAK 1214 L GK + + ++ S P + + Sbjct: 1200 TALAGKPRQHIGITNPSPPGEDGR 1223 >tr|D6F2V9|D6F2V9_MYCTU Tax_Id=611302 SubName: Full=Transcription-repair coupling factor mfd;[Mycobacterium tuberculosis T46] Length = 1234 Score = 1778 bits (4606), Expect = 0.0 Identities = 909/1224 (74%), Positives = 1013/1224 (82%), Gaps = 11/1224 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG TPIAGLVELALS P+ Q ++ + P + G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+L AELRGVFGD+VAL PSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDTVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PL VVVT+ RSLLQPM P L +EP+TL+VG E F+ VVARLV+L+YTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ + T+VA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 CRELL+++DVR RAA LAA HP E+TV G+ DMLAKLAEGI VDGMEA+LP+L Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDAPIDLEAL 357 LT LP+G PVLVCDPEKVRTRAADLI+TGREFLEASWS AA+G AP+D+E L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRA 417 G SGFV GHPWWTLSQLSDESA+ELD+R+APSARG Q +++EIFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477 H+ATGGYAA+V PG GTAHRVVE+L E+DT A +L+PG APK GVVGVL+GPL GV++P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTER 537 GANLV+ITETDLTG+RV+A EG++LAAKRRN+VDPLALTAGDLVVHDQHGIG+FVEM ER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 VVGGARREYLVLEYASSKRGGG---TDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWAN 594 VGGARREYLVLEYAS+KRGGG TDKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDWAN Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEV 654 TKTKARRAVREIA ELV+LYAKRQ++PGHAF PDTPWQAE+EDAFGFTET+DQLTAI+EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 714 K+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQ 774 M+GFPVT+KGLSRFTD AESRAVI+GL DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEK 894 HDDKQ+AAALRRELLRDGQAFY+HNRV +ID AAARVR+LVPEARVVVAHGQM E+ LE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014 YFLYPP PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T +E KDVRIDLPVDAHLPP+YI S Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYG LPEPA+ GIT++ A SA+TV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 RLSP+ LPDSAQ+RLKRMYPG HYRATT+TVQVP+PRAG G+GAPRIRD+ELVQ VA L+ Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVELVQMVADLI 1199 Query: 1191 LVLNGKGQGDVDMSKFSNPAGEAK 1214 L GK + + ++ S P + + Sbjct: 1200 TALAGKPRQHIGITNPSPPGEDGR 1223 >tr|D5YPZ0|D5YPZ0_MYCTU Tax_Id=515616 SubName: Full=Transcription-repair coupling factor mfd;[Mycobacterium tuberculosis 02_1987] Length = 1234 Score = 1778 bits (4606), Expect = 0.0 Identities = 909/1224 (74%), Positives = 1013/1224 (82%), Gaps = 11/1224 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG TPIAGLVELALS P+ Q ++ + P + G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+L AELRGVFGD+VAL PSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PL VVVT+ RSLLQPM P L +EP+TL+VG E F+ VVARLV+L+YTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ + T+VA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 CRELL+++DVR RAA LAA HP E+TV G+ DMLAKLAEGI VDGMEA+LP+L Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDAPIDLEAL 357 LT LP+G PVLVCDPEKVRTRAADLI+TGREFLEASWS AA+G AP+D+E L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRA 417 G SGFV GHPWWTLSQLSDESA+ELD+R+APSARG Q +++EIFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477 H+ATGGYAA+V PG GTAHRVVE+L E+DT A +L+PG APK GVVGVL+GPL GV++P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTER 537 GANLV+ITETDLTG+RV+A EG++LAAKRRN+VDPLALTAGDLVVHDQHGIG+FVEM ER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 VVGGARREYLVLEYASSKRGGG---TDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWAN 594 VGGARREYLVLEYAS+KRGGG TDKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDWAN Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEV 654 TKTKARRAVREIA ELV+LYAKRQ++PGHAF PDTPWQAE+EDAFGFTET+DQLTAI+EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 714 K+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQ 774 M+GFPVT+KGLSRFTD AESRAVI+GL DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEK 894 HDDKQ+AAALRRELLRDGQAFY+HNRV +ID AAARVR+LVPEARVVVAHGQM E+ LE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014 YFLYPP PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T +E KDVRIDLPVDAHLPP+YI S Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYG LPEPA+ GIT++ A SA+TV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 RLSP+ LPDSAQ+RLKRMYPG HYRATT+TVQVP+PRAG G+GAPRIRD+ELVQ VA L+ Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVELVQMVADLI 1199 Query: 1191 LVLNGKGQGDVDMSKFSNPAGEAK 1214 L GK + + ++ S P + + Sbjct: 1200 TALAGKPRQHIGITNPSPPGEDGR 1223 >tr|D5YDK2|D5YDK2_MYCTU Tax_Id=520140 SubName: Full=Transcription-repair coupling factor Mfd;[Mycobacterium tuberculosis EAS054] Length = 1234 Score = 1778 bits (4606), Expect = 0.0 Identities = 909/1224 (74%), Positives = 1013/1224 (82%), Gaps = 11/1224 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG TPIAGLVELALS P+ Q ++ + P + G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+L AELRGVFGD+VAL PSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDTVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PL VVVT+ RSLLQPM P L +EP+TL+VG E F+ VVARLV+L+YTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ + T+VA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 CRELL+++DVR RAA LAA HP E+TV G+ DMLAKLAEGI VDGMEA+LP+L Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDAPIDLEAL 357 LT LP+G PVLVCDPEKVRTRAADLI+TGREFLEASWS AA+G AP+D+E L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRA 417 G SGFV GHPWWTLSQLSDESA+ELD+R+APSARG Q +++EIFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477 H+ATGGYAA+V PG GTAHRVVE+L E+DT A +L+PG APK GVVGVL+GPL GV++P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTER 537 GANLV+ITETDLTG+RV+A EG++LAAKRRN+VDPLALTAGDLVVHDQHGIG+FVEM ER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 VVGGARREYLVLEYASSKRGGG---TDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWAN 594 VGGARREYLVLEYAS+KRGGG TDKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDWAN Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEV 654 TKTKARRAVREIA ELV+LYAKRQ++PGHAF PDTPWQAE+EDAFGFTET+DQLTAI+EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 714 K+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQ 774 M+GFPVT+KGLSRFTD AESRAVI+GL DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEK 894 HDDKQ+AAALRRELLRDGQAFY+HNRV +ID AAARVR+LVPEARVVVAHGQM E+ LE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014 YFLYPP PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T +E KDVRIDLPVDAHLPP+YI S Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYG LPEPA+ GIT++ A SA+TV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 RLSP+ LPDSAQ+RLKRMYPG HYRATT+TVQVP+PRAG G+GAPRIRD+ELVQ VA L+ Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVELVQMVADLI 1199 Query: 1191 LVLNGKGQGDVDMSKFSNPAGEAK 1214 L GK + + ++ S P + + Sbjct: 1200 TALAGKPRQHIGITNPSPPGEDGR 1223 >tr|A4KFW0|A4KFW0_MYCTU Tax_Id=395095 SubName: Full=Transcription-repair coupling factor mfd;[Mycobacterium tuberculosis str. Haarlem] Length = 1234 Score = 1778 bits (4606), Expect = 0.0 Identities = 909/1224 (74%), Positives = 1013/1224 (82%), Gaps = 11/1224 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG TPIAGLVELALS P+ Q ++ + P + G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+L AELRGVFGD+VAL PSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PL VVVT+ RSLLQPM P L +EP+TL+VG E F+ VVARLV+L+YTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ + T+VA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 CRELL+++DVR RAA LAA HP E+TV G+ DMLAKLAEGI VDGMEA+LP+L Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDAPIDLEAL 357 LT LP+G PVLVCDPEKVRTRAADLI+TGREFLEASWS AA+G AP+D+E L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRA 417 G SGFV GHPWWTLSQLSDESA+ELD+R+APSARG Q +++EIFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477 H+ATGGYAA+V PG GTAHRVVE+L E+DT A +L+PG APK GVVGVL+GPL GV++P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTER 537 GANLV+ITETDLTG+RV+A EG++LAAKRRN+VDPLALTAGDLVVHDQHGIG+FVEM ER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 VVGGARREYLVLEYASSKRGGG---TDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWAN 594 VGGARREYLVLEYAS+KRGGG TDKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDWAN Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEV 654 TKTKARRAVREIA ELV+LYAKRQ++PGHAF PDTPWQAE+EDAFGFTET+DQLTAI+EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 714 K+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQ 774 M+GFPVT+KGLSRFTD AESRAVI+GL DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEK 894 HDDKQ+AAALRRELLRDGQAFY+HNRV +ID AAARVR+LVPEARVVVAHGQM E+ LE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014 YFLYPP PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T +E KDVRIDLPVDAHLPP+YI S Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYG LPEPA+ GIT++ A SA+TV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 RLSP+ LPDSAQ+RLKRMYPG HYRATT+TVQVP+PRAG G+GAPRIRD+ELVQ VA L+ Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVELVQMVADLI 1199 Query: 1191 LVLNGKGQGDVDMSKFSNPAGEAK 1214 L GK + + ++ S P + + Sbjct: 1200 TALAGKPRQHIGITNPSPPGEDGR 1223 >tr|D6FPS2|D6FPS2_MYCTU Tax_Id=611304 SubName: Full=Transcription-repair coupling factor mfd;[Mycobacterium tuberculosis K85] Length = 1234 Score = 1777 bits (4603), Expect = 0.0 Identities = 908/1224 (74%), Positives = 1013/1224 (82%), Gaps = 11/1224 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG TPIAGLVELALS P+ Q ++ + P + G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+L AELRGVFGD+VAL PSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PL VVVT+ RSLLQPM P L +EP+TL+VG E F+ VVARLV+L+YTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ + T+VA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 CRELL+++DVR RAA LAA HP E+TV G+ DMLAKLAEGI VDGMEA+LP+L Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDAPIDLEAL 357 LT LP+G PVLVCDPEKVRTRAADLI+TGREFLEASWS AA+G AP+D+E L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRA 417 G SGFV GHPWWTLSQLSDESA+ELD+R+APSARG Q +++EIFAMLRA Sbjct: 361 GGSGFVELDQARAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477 H+ATGGYAA+V PG GTAHRVVE+L E+DT A +L+PG APK GVVGVL+GPL GV++P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTER 537 GANLV+ITETDLTG+RV+A EG++LAAKRRN+VDPLALTAGDLVVHDQHGIG+FVEM ER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 VVGGARREYLVLEYASSKRGGG---TDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWAN 594 VGGARREYLVLEYAS+KRGGG TDKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDWAN Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEV 654 TKTKARRAVREIA ELV+LYAKRQ++PGHAF PDTPWQAE+EDAFGFTET+DQLTAI+EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 714 K+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQ 774 M+GFPVT+KGLSRFTD AESRAVI+GL DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEK 894 HDDKQ+AAALRRELLRDGQAFY+HNRV +ID AAARVR+LVPEARVVVAHGQM E+ LE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014 YFLYPP PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T +E KDVRIDLPVDAHLPP+YI S Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYG LPEPA+ GIT++ A SA+TV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 RLSP+ LPDSAQ+RLKRMYPG HYRATT+TVQVP+PRAG G+GAPRIRD+ELV+ VA L+ Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVELVEMVADLI 1199 Query: 1191 LVLNGKGQGDVDMSKFSNPAGEAK 1214 L GK + + ++ S P + + Sbjct: 1200 TALAGKPRQHIGITNPSPPGEDGR 1223 >tr|D5Z1R3|D5Z1R3_MYCTU Tax_Id=537209 SubName: Full=Transcription-repair coupling factor mfd;[Mycobacterium tuberculosis GM 1503] Length = 1234 Score = 1776 bits (4599), Expect = 0.0 Identities = 908/1224 (74%), Positives = 1012/1224 (82%), Gaps = 11/1224 (0%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG TPIAGLVELALS P+ Q ++ + P + G Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREAD+L AELRGVFGD+VAL PSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PL VVVT+ RSLLQPM P L +EP+TL+VG E F+ VVARLV+L+YTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ + T+VA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 CRELL+++DVR RAA LAA HP E+TV G+ DMLAKLAEGI VDGMEA+LP+L Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVG---GDAPIDLEAL 357 LT LP+G PVLVCDPEKVRTRAA LI+TGREFLEASWS AA+G AP+D+E L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAAHLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRA 417 G SGFV GHPWWTLSQLSDESA+ELD+R+APSARG Q +++EIFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477 H+ATGGYAA+V PG GTAHRVVE+L E+DT A +L+PG APK GVVGVL+GPL GV++P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTER 537 GANLV+ITETDLTG+RV+A EG++LAAKRRN+VDPLALTAGDLVVHDQHGIG+FVEM ER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 VVGGARREYLVLEYASSKRGGG---TDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWAN 594 VGGARREYLVLEYAS+KRGGG TDKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDWAN Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEV 654 TKTKARRAVREIA ELV+LYAKRQ++PGHAF PDTPWQAE+EDAFGFTET+DQLTAI+EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 714 K+DMEKP+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQ 774 M+GFPVT+KGLSRFTD AESRAVI+GL DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEK 894 HDDKQ+AAALRRELLRDGQAFY+HNRV +ID AAARVR+LVPEARVVVAHGQM E+ LE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TV+ FWNRE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014 YFLYPP PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T +E KDVRIDLPVDAHLPP+YI S Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYG LPEPA+ GIT++ A SA+TV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 RLSP+ LPDSAQ+RLKRMYPG HYRATT+TVQVP+PRAG G+GAPRIRD+ELVQ VA L+ Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAG-GLGAPRIRDVELVQMVADLI 1199 Query: 1191 LVLNGKGQGDVDMSKFSNPAGEAK 1214 L GK + + ++ S P + + Sbjct: 1200 TALAGKPRQHIGITNPSPPGEDGR 1223 >tr|B8ZU68|B8ZU68_MYCLB Tax_Id=561304 (mfd)SubName: Full=Putative transcription-repair coupling factor;[Mycobacterium leprae] Length = 1224 Score = 1702 bits (4409), Expect = 0.0 Identities = 884/1208 (73%), Positives = 969/1208 (80%), Gaps = 13/1208 (1%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG + TPIAGLVELAL+ P+ ++ GP + G Sbjct: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREA LTAELRGVFG +VA+FPSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PL+VVVT RSLLQPM L +EPVTLSVG E+ FE V+ARLV+L+YTRVD Sbjct: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ DQRSIPE+ V T+VA+ Sbjct: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 Query: 241 PCRELLMTDDVRERAAALAAE----HPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLL 296 CRELL++DDVR RA LAA+ PT E + G+V D+LAKLAEGIPVDGMEALLP+L Sbjct: 241 ACRELLLSDDVRARAVELAAQAAARRPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 Query: 297 HPIEPTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGD--APIDL 354 P + LT PVL+CDPEKVR +AADLIKT R FLEASWS AA+G D AP+D+ Sbjct: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV 360 Query: 355 EALGASGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAM 414 E L SGFV GHPWWTLSQLSDESA+ELDIR+APS RG QH ++ IFAM Sbjct: 361 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFAM 420 Query: 415 LRAHVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAP----KAGVVGVLKGPL 470 LRAHVATGGYAA+VTPG GTAHRVVE+L E+D +LEP AP + G+VGVLKGPL Sbjct: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIPGAMLEPAAAPGLGLRPGLVGVLKGPL 480 Query: 471 CSGVVLPGANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGK 530 GVV+PGANLVIITE DLTG+R T EG++LAAKRR+ DPLALTAGDLVVHDQHGIG+ Sbjct: 481 LDGVVIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGR 540 Query: 531 FVEMTERVVGGARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGS 590 FVEM ER VGGARREYLVLEYAS+K+ DKLYVPMDSLDQLSRYVGG+AP+LSRLGGS Sbjct: 541 FVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGS 600 Query: 591 DWANTKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTA 650 DWANTKTKAR AVREIA ELV+LYAKRQ++PGHAFGPDTPWQAEMEDAFGFTET+DQLTA Sbjct: 601 DWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTA 660 Query: 651 IQEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQT 710 I EVK DMEK VPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL+T Sbjct: 661 ITEVKGDMEKSVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRT 720 Query: 711 FTNRMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIV 770 FT RMAGFPVTVKGLSRFTD AESRAVI+GL +GSVD+VIGTHRLLQTGV WKDLGL++V Sbjct: 721 FTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVV 780 Query: 771 DEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 830 DEEQ FGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT Sbjct: 781 DEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 840 Query: 831 YVGPHDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEE 890 YVGPHDDKQVAAALRRELLRDGQAFY+HNRV +I +AAARV LVPEARVVVAHGQM E+ Sbjct: 841 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPED 900 Query: 891 TLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRE 950 LE T+ GFWNREYDILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVGRS E Sbjct: 901 LLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHE 960 Query: 951 RGYAYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVA 1010 RGYAYFLYPP PLTE AYDRL TIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVA Sbjct: 961 RGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1020 Query: 1011 GVGFDLYVRLVGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 GVGFDLYVRLVGEAVEAYRA ADGKT TP+E KDVRIDLPVDAHLPP+YI S Sbjct: 1021 GVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 IDRYG LPEPAQ GI E+ A SAST+ Sbjct: 1081 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM 1140 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEG---VGAPRIRDLELVQWVA 1187 RLSP+ L DSAQ+RLKRMYPG YRAT +TVQVP+PRAG +G P IRD+ELVQ VA Sbjct: 1141 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA 1200 Query: 1188 GLVLVLNG 1195 L+ L G Sbjct: 1201 DLITALQG 1208 >tr|Q9CD43|Q9CD43_MYCLE Tax_Id=1769 (mfd)SubName: Full=Putative transcription-repair coupling factor;[Mycobacterium leprae] Length = 1224 Score = 1701 bits (4404), Expect = 0.0 Identities = 883/1208 (73%), Positives = 968/1208 (80%), Gaps = 13/1208 (1%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MTAPG + TPIAGLVELAL+ P+ ++ GP + G Sbjct: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 Query: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXX 120 PLLVV ATGREA LTAELRGVFG +VA+FPSWETLPHERLSPGV+TVG Sbjct: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 Query: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 PDD LG PL+VVVT RSLLQPM L +EPVTLSVG E+ FE V+ARLV+L+YTRVD Sbjct: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 Query: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ DQRSIPE+ V T+VA+ Sbjct: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 Query: 241 PCRELLMTDDVRERAAALAAE----HPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLL 296 CRELL++DDVR RA LAA+ PT E + G+V D+LAKLAEGIPVDGMEALLP+L Sbjct: 241 ACRELLLSDDVRARAVELAAQAAARRPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 Query: 297 HPIEPTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGD--APIDL 354 P + LT PVL+CDPEKVR +AADLIKT R FLEASWS AA+G D AP+D+ Sbjct: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV 360 Query: 355 EALGASGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAM 414 E L SGFV GHPWWTLSQLSDESA+ELDIR+APS RG QH ++ IFAM Sbjct: 361 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFAM 420 Query: 415 LRAHVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAP----KAGVVGVLKGPL 470 LRAHVATGGYAA+VTPG GTAHRVVE+L E+D +LEP AP + G+VGVLKGPL Sbjct: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIPGAMLEPAAAPGLGLRPGLVGVLKGPL 480 Query: 471 CSGVVLPGANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGK 530 GVV+PGANLVIITE DLTG+R T EG++LAAKRR+ DPLALTAGDLVVHDQHGIG+ Sbjct: 481 LDGVVIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGR 540 Query: 531 FVEMTERVVGGARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGS 590 FVEM ER VGGARREYLVLEYAS+K+ DKLYVPMDSLDQLSRYVGG+AP+LSRLGGS Sbjct: 541 FVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGS 600 Query: 591 DWANTKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTA 650 DWANTKTKAR AVREIA ELV+LYAKRQ++PGHAFGPDTPWQAEMEDAFGFTET+DQLTA Sbjct: 601 DWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTA 660 Query: 651 IQEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQT 710 I EVK DMEK VPMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQHL+T Sbjct: 661 ITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRT 720 Query: 711 FTNRMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIV 770 FT RMAGFPVTVKGLSRFTD AESRAVI+GL +GSVD+VIGTHRLLQTGV WKDLGL++V Sbjct: 721 FTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVV 780 Query: 771 DEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 830 DEEQ FGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT Sbjct: 781 DEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 840 Query: 831 YVGPHDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEE 890 YVGPHDDKQVAAALRRELLRDGQAFY+HNRV +I +AAARV LVPEARVVVAHGQM E+ Sbjct: 841 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPED 900 Query: 891 TLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRE 950 LE T+ GFWNREYDILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVGRS E Sbjct: 901 LLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHE 960 Query: 951 RGYAYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVA 1010 RGYAYFLYPP PLTE AYDRL TIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVA Sbjct: 961 RGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1020 Query: 1011 GVGFDLYVRLVGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 GVGFDLYVRLVGEAVEAYRA ADGKT TP+E KDVRIDLPVDAHLPP+YI S Sbjct: 1021 GVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 IDRYG LPEPAQ GI E+ A SAST+ Sbjct: 1081 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM 1140 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEG---VGAPRIRDLELVQWVA 1187 RLSP+ L DSAQ+RLKRMYPG YRAT +TVQVP+PRAG +G P IRD+ELVQ VA Sbjct: 1141 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA 1200 Query: 1188 GLVLVLNG 1195 L+ L G Sbjct: 1201 DLITALQG 1208 >tr|B1MKF3|B1MKF3_MYCA9 Tax_Id=561007 SubName: Full=Probable transcription-repair coupling factor (TrcF);[Mycobacterium abscessus] Length = 1216 Score = 1655 bits (4287), Expect = 0.0 Identities = 854/1211 (70%), Positives = 964/1211 (79%), Gaps = 15/1211 (1%) Query: 7 TSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQ--NGPLLV 64 T+ P+AG++ AL DP+ DV+ P + P+LV Sbjct: 2 TATTPPLAGVIRTALRDPAF-DVLAPAIAAKTGLDLTAPTCARAFVVTGMADASDAPVLV 60 Query: 65 VAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXXPDDE 124 V AT REA +LTAELR V+GD+V L PSWETLPHERLSPGV+TVG P+D Sbjct: 61 VTATTREAQDLTAELRDVYGDAVTLLPSWETLPHERLSPGVDTVGARLQVLHRLAHPEDS 120 Query: 125 TLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVDMVGK 184 +G PLRVV+TT RSLLQPM+P+L D+EPV L+VGAE+EF+ V+ARLV+L+YTRVDMV Sbjct: 121 RMGVPLRVVITTVRSLLQPMSPELFDLEPVELAVGAELEFDGVIARLVELAYTRVDMVAG 180 Query: 185 RGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAVPCRE 244 RGEFAVRGGILDVF PTA+HPVRVEFWGDE+SEMR F++ADQRSIPE+ V +V+A+PCRE Sbjct: 181 RGEFAVRGGILDVFSPTADHPVRVEFWGDEVSEMRYFSVADQRSIPELQVDSVLAMPCRE 240 Query: 245 LLMTDDVRERAAALAAEHPTTENT----VPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 LL+TD VR RAA LA+ + + + V +MLAKLA+GI VDGME+LLP+LH + Sbjct: 241 LLLTDQVRARAAELASAAGVSGSEEGHRLGAGVGEMLAKLADGICVDGMESLLPVLHSGK 300 Query: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALGAS 360 T L HLP+ APVLVCDPEKVRTRAADL +TGREFLEASWS AA+G DAPID+EAL S Sbjct: 301 LTMLVDHLPDHAPVLVCDPEKVRTRAADLERTGREFLEASWSVAAIGSDAPIDVEALADS 360 Query: 361 GFVTFXXXXXXXXXGGHPWWTLSQLS--DESAVELDIRSAPSARGSQHNLEEIFAMLRAH 418 GF G+PWW+LS L ++ A+ L +R +PSARG + EIFAMLRAH Sbjct: 361 GFRELDDVKHAAGEAGYPWWSLSPLGMDNDQAIGLAVRPSPSARGHKEGAAEIFAMLRAH 420 Query: 419 VATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPG 478 V TGG AAVV G GT HR++EQL E +T AT+LEPG P GVVGVL+G L GVVL G Sbjct: 421 VMTGGRAAVVAAGAGTTHRIIEQLAETETPATLLEPGAEPAEGVVGVLRGHLTDGVVLTG 480 Query: 479 ANLVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERV 538 AN+VI+TETDLTG+RV A +G++L AKRRN VDPLAL+AGDLVVHDQHGIG+FVEM ER Sbjct: 481 ANIVIVTETDLTGSRVAATDGKRLPAKRRNQVDPLALSAGDLVVHDQHGIGRFVEMVERT 540 Query: 539 VGGARREYLVLEYASSKRG----GGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWAN 594 VGGARREYLVLEYAS KRG G +D+LYVPMDSLDQLSRYVGGE+P LSRLGGSDW N Sbjct: 541 VGGARREYLVLEYASGKRGAAAGGQSDRLYVPMDSLDQLSRYVGGESPGLSRLGGSDWTN 600 Query: 595 TKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEV 654 TKTKAR+AVREIA ELVALYA RQ+APGHAF PDTPWQ EMEDAFGF ET+DQLTAI EV Sbjct: 601 TKTKARKAVREIAGELVALYAARQAAPGHAFAPDTPWQREMEDAFGFVETVDQLTAITEV 660 Query: 655 KSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 714 KSDMEKPVPMDRV+CGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR Sbjct: 661 KSDMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 720 Query: 715 MAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQ 774 AGFPV V GLSRFTDP S+ V+EG+ DGSVD+VIGTHRLLQTGV WKDLGL+IVDEEQ Sbjct: 721 TAGFPVKVAGLSRFTDPLTSKLVVEGMADGSVDIVIGTHRLLQTGVRWKDLGLVIVDEEQ 780 Query: 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIK++RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEK 894 HDDKQVAAALRRELLRDGQAFY+HNRV TID+AAAR+R LVPEARVVVAHGQM EE LE+ Sbjct: 841 HDDKQVAAALRRELLRDGQAFYVHNRVSTIDKAAARIRDLVPEARVVVAHGQMPEEMLER 900 Query: 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TV+GFWNREYDILVCTTI+ETGLDISNANTLIVERAD FGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQGFWNREYDILVCTTIIETGLDISNANTLIVERADIFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014 YFLY P PLTETAYDRL+TIAQNN+LGAGMAVAMKDLEIRGAGNVLG EQSGHVAGVGF Sbjct: 961 YFLYSPEVPLTETAYDRLSTIAQNNDLGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXXXX 1074 DLYVRLVGEAVEAYRAAADGKTV T +E K+VRIDLPVDAHLP +YIGS Sbjct: 1021 DLYVRLVGEAVEAYRAAADGKTVLTAEEPKEVRIDLPVDAHLPTDYIGSDRLRLEAYRRL 1080 Query: 1075 XXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRLSP 1134 DRYGPLP P Q E GIT++ V + +R+ P Sbjct: 1081 AAAADAAQINAAVEELADRYGPLPLPVQRLVAVASLRLLCREMGITDLSVV-GTNIRIQP 1139 Query: 1135 MVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGE-GVGAPRIRDLELVQWVAGLVLVL 1193 + L DSAQLRLKR++P YRATTS VQVP+PRAG+ GVG+ RIRDLELV +A L++ L Sbjct: 1140 LPLLDSAQLRLKRLHPAAQYRATTSVVQVPIPRAGDGGVGSDRIRDLELVHMIAELLVAL 1199 Query: 1194 NGKGQGDVDMS 1204 +G+ G VD++ Sbjct: 1200 SGRPAGSVDIT 1210 >tr|Q5YQ14|Q5YQ14_NOCFA Tax_Id=37329 (mfd)SubName: Full=Putative transcription-repair coupling factor;[Nocardia farcinica] Length = 1205 Score = 1573 bits (4074), Expect = 0.0 Identities = 814/1204 (67%), Positives = 939/1204 (77%), Gaps = 15/1204 (1%) Query: 7 TSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNGPLLVVA 66 +S + P+AGL +A +D +L+ V V P P++VV Sbjct: 2 SSSRPPLAGLAAVAGADAALRTVADLVGTTTVDM--VAPAAARSFVAATVAGKRPVVVVT 59 Query: 67 ATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXXPDDETL 126 ATGREAD+LT EL + GDSVA FPSWETLPHERLSP +TVG PDD Sbjct: 60 ATGREADDLTVELTEILGDSVAQFPSWETLPHERLSPSADTVGRRLAVLRRLAHPDDPVF 119 Query: 127 GAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVDMVGKRG 186 PLRVVVTT RSL+QPMA L DIEP+ L GAE++F+D++ RLV+ +YTRVDMVGKRG Sbjct: 120 PVPLRVVVTTVRSLMQPMAAGLGDIEPIVLREGAELDFDDLLTRLVEFAYTRVDMVGKRG 179 Query: 187 EFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAVPCRELL 246 EFAVRGGILD+FPPTA+HPVRVEFWGDE++++RAFA+ADQRS+PE+ + TVVA PCRELL Sbjct: 180 EFAVRGGILDLFPPTADHPVRVEFWGDEVTQVRAFAVADQRSLPEIEIDTVVATPCRELL 239 Query: 247 MTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIEPTTLTR 306 +T VRERAA +AA N + +ML KLAEGIPV+GMEALLP+L P E T LT Sbjct: 240 LTAPVRERAAQVAAA-----NAADAALVEMLDKLAEGIPVEGMEALLPVLQPGELTLLTE 294 Query: 307 HLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEAL--GASGFVT 364 L G VL+CDPEK+RTRAADL++TG EFLEASW+ A+ G DAP+ L AS + Sbjct: 295 QLAAGTHVLLCDPEKIRTRAADLVRTGAEFLEASWTAASFGADAPLGGNGLDLAASSYRA 354 Query: 365 FXXXXXXXXXGGHPWWTLSQLS--DESAVELDIRSAPSARGSQHNLEEIFAMLRAHVATG 422 G WWTLS L+ D + V L + AP+ARGS + IFA LRAHV TG Sbjct: 355 LPQIREDADRHGLAWWTLSPLASGDPAEVVLPLHQAPTARGSDELVATIFASLRAHVTTG 414 Query: 423 GYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPGANLV 482 G A VV G GTA RV+E+L +A+ AT L G P GVVGVL G L GVV A LV Sbjct: 415 GRAVVVVAGHGTAQRVLERLADAEVPATALTAGAEPAPGVVGVLCGTLHDGVVFADAALV 474 Query: 483 IITETDLTGNRVTA-NEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVGG 541 ++ E+DLTGNRVTA EG++L AKRRN VDPLAL+AGD+VVHDQHGIG+FVEM ER VGG Sbjct: 475 VVAESDLTGNRVTAPGEGKRLPAKRRNQVDPLALSAGDMVVHDQHGIGRFVEMIERTVGG 534 Query: 542 ARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANTKTKARR 601 ARREYLV+EYA SKRG D+L+VPM+SLDQLSRYVGGE PSLS+LGGSDWANTK KAR+ Sbjct: 535 ARREYLVIEYAPSKRGQPGDRLFVPMESLDQLSRYVGGEMPSLSKLGGSDWANTKRKARK 594 Query: 602 AVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKSDMEKP 661 AVREIA ELV LYA RQ+APGHAFGPDTPWQ EMEDAF FTET+DQ+TAI EVK+DMEKP Sbjct: 595 AVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETVDQMTAIAEVKADMEKP 654 Query: 662 VPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFPVT 721 VPMDRV+CGDVGYGKTEIAVRAAFKAVQDGKQV VLVPTTLLA QHLQTFT R+AGFPVT Sbjct: 655 VPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHLQTFTERVAGFPVT 714 Query: 722 VKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGVEHK 781 VKGLSRFTDPAESRAV+EG+ DGSVD+V+GTHRLLQTGV WKDLGL+IVDEEQRFGVEHK Sbjct: 715 VKGLSRFTDPAESRAVLEGMADGSVDIVVGTHRLLQTGVRWKDLGLVIVDEEQRFGVEHK 774 Query: 782 EHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQVA 841 EHIK++RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEER+PVLTYVG ++DKQV Sbjct: 775 EHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPVLTYVGAYNDKQVT 834 Query: 842 AALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKTVEGFWN 901 AA+RRELLRDGQ FY+HNRV +ID+AA R+R LVPEARVVVAHGQMNE+TLE+TV+GFW Sbjct: 835 AAIRRELLRDGQVFYVHNRVSSIDKAAKRIRDLVPEARVVVAHGQMNEDTLERTVQGFWQ 894 Query: 902 REYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPN 961 REYD+LVCTTI+ETGLDISNANTLIVERADT GLSQLHQLRGRVGRSRERGYAYFLYPP Sbjct: 895 REYDVLVCTTIIETGLDISNANTLIVERADTLGLSQLHQLRGRVGRSRERGYAYFLYPPE 954 Query: 962 KPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLV 1021 KPLTETAYDRLATIAQN++LGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLV Sbjct: 955 KPLTETAYDRLATIAQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLV 1014 Query: 1022 GEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXXXXXXXXXXX 1081 GEAVEAYRAAADGK + T +E K+VRIDLPVDAH+PP+Y+ S Sbjct: 1015 GEAVEAYRAAADGKPITT-EEVKEVRIDLPVDAHIPPDYVASDRLRLEAYRKLAAAQDDS 1073 Query: 1082 XXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRLSPMV-LPDS 1140 +DRYGPLP E+GITEI AV+ +T+++SP++ LPDS Sbjct: 1074 ALASVVEELVDRYGPLPVEVGRLVSVAKLRLLAREYGITEI-AVTGTTLKISPLLNLPDS 1132 Query: 1141 AQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLVLVLNGKGQGD 1200 QLRLKR+YP Y+A + VQ+PLPR + VGA R+RD++L+Q+VA L+L L+GK QG Sbjct: 1133 KQLRLKRLYPSAGYKAASGVVQLPLPRVEDSVGAERVRDVQLLQFVADLLLALDGKAQGA 1192 Query: 1201 VDMS 1204 VD++ Sbjct: 1193 VDLT 1196 >tr|C1AY76|C1AY76_RHOOB Tax_Id=632772 (mfd)SubName: Full=Transcription-repair coupling factor;[Rhodococcus opacus] Length = 1215 Score = 1559 bits (4037), Expect = 0.0 Identities = 799/1211 (65%), Positives = 937/1211 (77%), Gaps = 23/1211 (1%) Query: 8 SVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNGPLLVVAA 67 S TP+AGL ++AL D + V V P + LL+V A Sbjct: 11 SSDTPLAGLAKIALGDAVVAQVTEALGRRHLDI--VAPAPARPFVAAALAERTHLLLVTA 68 Query: 68 TGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXXPDDETLG 127 TGREAD+LTAEL+ + GD+VA FPSWETLPHERLSP +TVG PDD + G Sbjct: 69 TGREADDLTAELQEMIGDAVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDRSYG 128 Query: 128 APLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVDMVGKRGE 187 APL+VVVTT RSL+QPMAP L +IEPVTL VG E +F+ ++ RLV+++YTRVDMVGKRGE Sbjct: 129 APLQVVVTTVRSLVQPMAPGLGEIEPVTLRVGVEHDFDGLIQRLVEMAYTRVDMVGKRGE 188 Query: 188 FAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAVPCRELLM 247 FAVRGGILD+F PTA+HPVRVEFWGDE++E+RAF++ADQRS+ E+ + V+A PCRELL+ Sbjct: 189 FAVRGGILDLFSPTADHPVRVEFWGDEVTELRAFSVADQRSLAELDIDAVIAPPCRELLL 248 Query: 248 TDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIEPTTLTRH 307 T+DVR+RAA LA + N + +ML K++ GIPV+GMEALLP+L P + LT Sbjct: 249 TEDVRDRAAQLAVD-----NQADAALVEMLDKMSAGIPVEGMEALLPVLRPGQLQLLTDV 303 Query: 308 LPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEAL-------GAS 360 LPE A VL+CDPEK+RTRA DL++TG+EFLEASW+ A++GG AP+D L GAS Sbjct: 304 LPESAHVLLCDPEKIRTRATDLVRTGQEFLEASWTAASIGGAAPLDTSVLKGDGIDLGAS 363 Query: 361 GFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELD--IRSAPSARGSQHNLEEIFAMLRAH 418 + T G PWWTLS L+ S EL+ I AP RGS L E+F LRAH Sbjct: 364 AYRTLSQVRESAETAGLPWWTLSPLASGSGEELELAITPAPQVRGSDELLSELFVSLRAH 423 Query: 419 VATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPG 478 V+TGG A +V G GTAHRV+E+L EA+ A L PG+ P G VGVL+G L G+V PG Sbjct: 424 VSTGGRAVIVVAGAGTAHRVLERLREAEVPAAELTPGSEPARGQVGVLRGSLHDGLVFPG 483 Query: 479 AN----LVIITETDLTGNRVTA-NEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVE 533 + LV++TE+DLTGNRV A +GR+L AKRRN VDPLALTAGD+VVHDQHGIG+FVE Sbjct: 484 GDTTPGLVVVTESDLTGNRVAAVGDGRRLPAKRRNQVDPLALTAGDMVVHDQHGIGRFVE 543 Query: 534 MTERVVGGARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWA 593 M ER +GGARREYLV+EYA+SKRG D+L+VPM+SLDQLSRYVGGE P+LS+LGGSDWA Sbjct: 544 MVERTIGGARREYLVIEYAASKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGSDWA 603 Query: 594 NTKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQE 653 NTK KAR+AVREIA ELV LYA RQ+APGHAFGPDTPWQ EMEDAF FTET DQLT I E Sbjct: 604 NTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETHDQLTVISE 663 Query: 654 VKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTN 713 VK+DMEK VPMDRV+ GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA QHLQTFT Sbjct: 664 VKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFTE 723 Query: 714 RMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEE 773 RMA FPV V+GLSRFTD ES+ ++ G+ DG +DVV+GTHRLLQT V WKDLGL+IVDEE Sbjct: 724 RMAAFPVKVRGLSRFTDAGESKEIVAGMADGEIDVVVGTHRLLQTAVRWKDLGLVIVDEE 783 Query: 774 QRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVG 833 QRFGVEHKEHIK++RTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+P+LTYVG Sbjct: 784 QRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYVG 843 Query: 834 PHDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLE 893 + DKQVAAA+RRELLRDGQ FY+HNRV +ID+AA R+R+LVPEARVVVAHGQMNE+TLE Sbjct: 844 AYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAQRIRELVPEARVVVAHGQMNEDTLE 903 Query: 894 KTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGY 953 +TV+GFW R+YD+LVCTTI+ETGLDISNANTLIVERAD+ GLSQLHQLRGRVGRSRERGY Sbjct: 904 RTVQGFWERDYDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRERGY 963 Query: 954 AYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVG 1013 AYFLYPP KPLTETAYDRLATI+QN++LGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVG Sbjct: 964 AYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVG 1023 Query: 1014 FDLYVRLVGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXXX 1073 FDLYVRLVGEAVEA+RAAADGK + T K+VRIDLPVDAH+PP+Y+ S Sbjct: 1024 FDLYVRLVGEAVEAFRAAADGKPITTDDAPKEVRIDLPVDAHIPPDYVTSDRLRLEGYRK 1083 Query: 1074 XXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRLS 1133 +DRYGPLPE + E+G+ EI AV + +++S Sbjct: 1084 LAAATELDGITAVVDELVDRYGPLPEEVRRLVSVAKLRLLAREYGLEEI-AVVGTQLKIS 1142 Query: 1134 PMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGE-GVGAPRIRDLELVQWVAGLVLV 1192 PM LPDS QLRLKR+YP YRATT VQ+PLPRAG G+GA R+RD+EL+Q++A LVL Sbjct: 1143 PMALPDSKQLRLKRIYPSAQYRATTGMVQLPLPRAGSGGIGAERVRDVELLQYIADLVLA 1202 Query: 1193 LNGKGQGDVDM 1203 L+GK G V M Sbjct: 1203 LDGKAAGSVVM 1213 >tr|D5PWZ3|D5PWZ3_COREQ Tax_Id=525370 (trcF)SubName: Full=Transcription-repair coupling factor; EC=3.6.1.-;[Rhodococcus equi ATCC 33707] Length = 1225 Score = 1558 bits (4034), Expect = 0.0 Identities = 802/1209 (66%), Positives = 933/1209 (77%), Gaps = 24/1209 (1%) Query: 11 TPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNGPLLVVAATGR 70 TP+AGL AL+D ++ V V P LL+V ATGR Sbjct: 15 TPLAGLASTALADGAIGRV--QDSVGRTGVDIVAPVAARPFVAAALADRTQLLLVTATGR 72 Query: 71 EADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXXPDDETLGAPL 130 EAD+LT EL+ +FGD VA FPSWETLPHERLSP +TVG PD+ G PL Sbjct: 73 EADDLTTELQEIFGDGVAQFPSWETLPHERLSPSADTVGRRLQVLRRLACPDEADYGPPL 132 Query: 131 RVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVDMVGKRGEFAV 190 RV+VTT RSL+QPMAP L DIEPV L +G+E +F ++V+RL +L+YTRVDMVGKRGEFAV Sbjct: 133 RVIVTTVRSLVQPMAPGLGDIEPVVLRIGSEHDFGELVSRLAELAYTRVDMVGKRGEFAV 192 Query: 191 RGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAVPCRELLMTDD 250 RGGILDVFPPT++HPVRVEFWGDE++E+RAF++ADQRS+PE+ + TVVA PCRELL+T+ Sbjct: 193 RGGILDVFPPTSDHPVRVEFWGDEVTELRAFSVADQRSLPELELSTVVAPPCRELLLTEA 252 Query: 251 VRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIEPTTLTRHLPE 310 VR+RAA LA TEN + +ML KL+ GIPV+GMEALLPLL P E LT LP Sbjct: 253 VRDRAAQLA-----TENPADAALVEMLDKLSAGIPVEGMEALLPLLQPGELQLLTEVLPR 307 Query: 311 GAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALG------ASGFVT 364 VL+CDPEK+RTRA DL++TG+EFLEASW+ A++GG APID LG AS + + Sbjct: 308 ETHVLLCDPEKIRTRATDLVRTGQEFLEASWTAASIGGAAPIDTSVLGGGIDLGASAYRS 367 Query: 365 FXXXXXXXXXGGHPWWTLSQLSDESAVEL--DIRSAPSARGSQHNLEEIFAMLRAHVATG 422 G PWWT+S L+ S EL ++SAP RGS+ L +F LRAHV TG Sbjct: 368 LRQVRENAEAQGRPWWTISPLASGSEDELVLPVQSAPEVRGSEELLSMLFVNLRAHVTTG 427 Query: 423 GYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPGAN-- 480 G A VV G GTAHRV+E+L EAD A L PG P G+V VL+G L G+VLPG + Sbjct: 428 GRAVVVVAGSGTAHRVLERLKEADVPAGELAPGAEPARGLVQVLRGSLHEGIVLPGDDAA 487 Query: 481 ----LVIITETDLTGNRVTA-NEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMT 535 LVI+TE+DLTGNRV A +G+K+ AKRRN VDPLALTAGD+VVHDQHGIG+FVEM Sbjct: 488 GVPGLVIVTESDLTGNRVAAAGDGKKMPAKRRNQVDPLALTAGDMVVHDQHGIGRFVEMV 547 Query: 536 ERVVGGARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANT 595 ER +GGARREYLV+EYA+SKRG D+L+VPM+SLDQLSRYVGGE P+LS+LGGSDW NT Sbjct: 548 ERTIGGARREYLVIEYAASKRGHPGDRLFVPMESLDQLSRYVGGEMPALSKLGGSDWQNT 607 Query: 596 KTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVK 655 K KAR+AVREIA ELV LYA RQ+APGHAFGPDTPWQ EMEDAF FTET DQLT I EVK Sbjct: 608 KRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETHDQLTVIDEVK 667 Query: 656 SDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRM 715 +DMEKPVPMDRV+ GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTTLLA QHLQTF+ RM Sbjct: 668 ADMEKPVPMDRVVIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFSERM 727 Query: 716 AGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQR 775 A FPV V+GLSRFTD AES+ +I L DG +D+V+GTHRLLQTGV WKDLGL+IVDEEQR Sbjct: 728 ANFPVKVRGLSRFTDAAESKEIIAQLADGEIDIVVGTHRLLQTGVRWKDLGLVIVDEEQR 787 Query: 776 FGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPH 835 FGVEHKEHIK++RTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+P+LTYVG + Sbjct: 788 FGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYVGAY 847 Query: 836 DDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKT 895 DKQVAAA+RRELLRDGQ FY+HNRV +ID+AA R+R++VPEARVVVAHGQMNEETLEKT Sbjct: 848 ADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKRIREMVPEARVVVAHGQMNEETLEKT 907 Query: 896 VEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAY 955 V+GFW RE+D+LVCTTI+ETGLDISNANTLIVERAD+ GLSQLHQLRGRVGRSRERGYAY Sbjct: 908 VQGFWEREFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRERGYAY 967 Query: 956 FLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFD 1015 FLYPP KPLTETAYDRLATI+QN++LGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFD Sbjct: 968 FLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFD 1027 Query: 1016 LYVRLVGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXXXXX 1075 LYVRLVGEAVEAYRA ADG+ V T E K+VRIDLPVDAH+PP+Y+ S Sbjct: 1028 LYVRLVGEAVEAYRAVADGRPVTTEPEVKEVRIDLPVDAHIPPDYVTSDRLRLEGYRKLA 1087 Query: 1076 XXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRLSPM 1135 +DRYGPLPE E+GI E+ AV+ + +++SPM Sbjct: 1088 AAADTDAIAAVVEELVDRYGPLPEEVGRLVSVAKLRLLCREYGIEEV-AVTGTQLKISPM 1146 Query: 1136 VLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGE-GVGAPRIRDLELVQWVAGLVLVLN 1194 LPDS QLRLKRMYP YRATT VQ+PLPRAG GVGA R+RD+EL+Q++A +L ++ Sbjct: 1147 QLPDSKQLRLKRMYPSAQYRATTGMVQMPLPRAGSGGVGAERVRDVELLQYIANFLLAMD 1206 Query: 1195 GKGQGDVDM 1203 GK VD+ Sbjct: 1207 GKAADSVDL 1215 >tr|Q0S4J8|Q0S4J8_RHOSR Tax_Id=101510 SubName: Full=Transcription repair coupling factor;[Rhodococcus sp.] Length = 1215 Score = 1555 bits (4027), Expect = 0.0 Identities = 795/1211 (65%), Positives = 935/1211 (77%), Gaps = 23/1211 (1%) Query: 8 SVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNGPLLVVAA 67 S TP+AGL ++AL D + V GP + LL+V A Sbjct: 11 SSDTPLAGLAKIALGDAVIAQVTEALGRHHLDIVAPGPARPFVAAALAERTH--LLLVTA 68 Query: 68 TGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXXPDDETLG 127 TGREAD+LTAELR + GD+VA FPSWETLPHERLSP +TVG PDD + G Sbjct: 69 TGREADDLTAELREMIGDAVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDRSYG 128 Query: 128 APLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVDMVGKRGE 187 APL+V+VTT RSL+QPMAP L +IEPVTL VG E +F+ ++ RLV+++YTRVDMVGKRGE Sbjct: 129 APLQVIVTTVRSLVQPMAPGLGEIEPVTLRVGVEHDFDGLIQRLVEMAYTRVDMVGKRGE 188 Query: 188 FAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAVPCRELLM 247 FAVRGGILD+F PTA+HPVRVEFWGDE++E+RAF++ADQRS+PE+ + V+A PCRELL+ Sbjct: 189 FAVRGGILDLFSPTADHPVRVEFWGDEVTELRAFSVADQRSLPELDIDAVIAPPCRELLL 248 Query: 248 TDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIEPTTLTRH 307 T+DVR+RAA LA + N + +ML K++ GIPV+GMEALLP+L P + LT Sbjct: 249 TEDVRDRAAQLAVD-----NQADAALVEMLDKMSAGIPVEGMEALLPVLRPGQLQLLTDV 303 Query: 308 LPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEAL-------GAS 360 LPE A VL+CDPEK+RTRA DL++TG+EFLEASW+ A++GG AP+D L GAS Sbjct: 304 LPESAHVLLCDPEKIRTRATDLVRTGQEFLEASWTAASIGGAAPLDTSVLRGDGIDLGAS 363 Query: 361 GFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELD--IRSAPSARGSQHNLEEIFAMLRAH 418 + + G PWWTLS L+ + EL+ + AP RGS L E+F LRAH Sbjct: 364 AYRSLSQVRESAEARGLPWWTLSPLASGNGEELELAVTPAPQVRGSDDLLSELFVSLRAH 423 Query: 419 VATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPG 478 V TGG A +V G GTAHRV+E+L EA+ A L PGT P G VGVL+G L G+V PG Sbjct: 424 VTTGGRAVIVVAGAGTAHRVLERLREAEVPAAELAPGTEPPRGQVGVLRGSLHDGLVFPG 483 Query: 479 ----ANLVIITETDLTGNRVTA-NEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVE 533 A LVI+TE DLTGNRV A +G++L AKRRN VDPLALTAGD+VVHDQHGIG+FVE Sbjct: 484 DDSTAGLVIVTEADLTGNRVAAVGDGKRLPAKRRNQVDPLALTAGDMVVHDQHGIGRFVE 543 Query: 534 MTERVVGGARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWA 593 M ER +GGARREYLV+EYA+SKRG D+L+VPM+SLDQLSRYVGGE P+LS+LGGSDWA Sbjct: 544 MVERTIGGARREYLVIEYAASKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGSDWA 603 Query: 594 NTKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQE 653 NTK KAR+AVREIA ELV LYA RQ+APGHAFGPDTPWQ EMEDAF FTET DQLT I E Sbjct: 604 NTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETHDQLTVISE 663 Query: 654 VKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTN 713 VK+DMEK VPMDRV+ GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA QHLQTFT Sbjct: 664 VKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFTE 723 Query: 714 RMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEE 773 RMA FPVTV+GLSRFTD +S+ I G+ DG +DVV+GTHRLLQTG+ WKDLGL+IVDEE Sbjct: 724 RMAAFPVTVRGLSRFTDAGDSKETIAGMADGEIDVVVGTHRLLQTGIRWKDLGLVIVDEE 783 Query: 774 QRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVG 833 QRFGVEHKEHIK++RTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+P+LTYVG Sbjct: 784 QRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYVG 843 Query: 834 PHDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLE 893 + DKQVAAA+RRELLRDGQ FY+HNRV +ID++A R+R+LVPEARVVVAHGQMNE+TLE Sbjct: 844 AYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKSAQRIRELVPEARVVVAHGQMNEDTLE 903 Query: 894 KTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGY 953 +TV+GFW R+YD+LVCTTI+ETGLDISNANTLIVERAD+ GLSQLHQLRGRVGRSRERGY Sbjct: 904 RTVQGFWERDYDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRERGY 963 Query: 954 AYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVG 1013 AYFLYPP KPLTETAYDRLATI+QN++LGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVG Sbjct: 964 AYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVG 1023 Query: 1014 FDLYVRLVGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXXX 1073 FDLYVRLVGEAVEA+RAAADG+ + T K+VRIDLPVDAH+PP+Y+ S Sbjct: 1024 FDLYVRLVGEAVEAFRAAADGRPITTEDAPKEVRIDLPVDAHIPPDYVTSDRLRLEGYRK 1083 Query: 1074 XXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRLS 1133 DRYGPLPE + E+G+ EI AV + ++++ Sbjct: 1084 LAAATELDGITAVVDELADRYGPLPEEVRRLVSVAKLRLLAREYGLEEI-AVVGTQLKIA 1142 Query: 1134 PMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGE-GVGAPRIRDLELVQWVAGLVLV 1192 PM LPDS QLRLKR+YP YRATT VQ+PLPRAG G+GA R+RD+EL+Q++A V+ Sbjct: 1143 PMALPDSKQLRLKRIYPSAQYRATTGMVQLPLPRAGSGGIGAERVRDVELLQYIADFVVA 1202 Query: 1193 LNGKGQGDVDM 1203 L+GK G V M Sbjct: 1203 LDGKAAGSVVM 1213 >tr|C1A324|C1A324_RHOE4 Tax_Id=234621 (mfd)SubName: Full=Transcription-repair coupling factor;[Rhodococcus erythropolis] Length = 1229 Score = 1540 bits (3986), Expect = 0.0 Identities = 783/1209 (64%), Positives = 941/1209 (77%), Gaps = 23/1209 (1%) Query: 7 TSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNGPLLVVA 66 +S QT +AGL E+AL+D + VI V P P+L+V Sbjct: 26 SSAQTALAGLAEVALADAAFTPVIDSIGAPALDI--VAPKPARPFIAAALAARTPVLLVT 83 Query: 67 ATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXXPDDETL 126 ATGREAD+LT+EL + G VA FPSWETLPHERLSP +TVG PDD + Sbjct: 84 ATGREADDLTSELTEMLGGGVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDASY 143 Query: 127 GAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVDMVGKRG 186 G+PLRV+VTT RSL+QPMAP L +IEP+TL VG E++F+ V+ RLV+++Y+RVDMVGKRG Sbjct: 144 GSPLRVIVTTVRSLVQPMAPGLGEIEPITLRVGTEIDFDSVLVRLVEMAYSRVDMVGKRG 203 Query: 187 EFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAVPCRELL 246 EFAVRGGILD+F PTA+HPVR+EFWGDE+SE+R F++ADQRS+P+V V +V+A PCREL+ Sbjct: 204 EFAVRGGILDLFSPTADHPVRIEFWGDEVSELRYFSVADQRSLPDVDVDSVIAPPCRELI 263 Query: 247 MTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIEPTTLTR 306 +T DVR+RAAALAAE N ++ +ML K++ GIPV+GMEALLP+L P E L+ Sbjct: 264 LTADVRDRAAALAAE-----NQADASLVEMLDKISAGIPVEGMEALLPVLKPGELQLLSD 318 Query: 307 HLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEAL-------GA 359 LP GA +L+CDPEKVRTRA DL++TG+EFLEASW+ A++GG AP+D L GA Sbjct: 319 VLPVGAHILLCDPEKVRTRATDLVRTGQEFLEASWTAASIGGAAPLDTSILNGGGVDLGA 378 Query: 360 SGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELDI--RSAPSARGSQHNLEEIFAMLRA 417 S + + G PWWT+S L+ + EL+I ++AP RGS L E+F LRA Sbjct: 379 SAYRSLRHVRESAEAAGRPWWTVSPLASGNGEELEIPVQAAPQVRGSDDLLAELFVSLRA 438 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477 HV+TGG AA+V G GTA RVVE+LGEA+ A +LE G P G V VL+G L G+VL Sbjct: 439 HVSTGGRAAIVVAGAGTASRVVERLGEAEVPAKMLEGGATPARGQVAVLRGSLHDGLVLA 498 Query: 478 GAN----LVIITETDLTGNRVTA-NEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFV 532 G + +VI+TE+DLTGNRV A +G++L AKRRN VDPLAL+AGD+VVHDQHGIG+FV Sbjct: 499 GDDSTPGMVIVTESDLTGNRVAAVGDGKRLPAKRRNQVDPLALSAGDMVVHDQHGIGRFV 558 Query: 533 EMTERVVGGARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDW 592 EM ER +GGARREYLV+EYA SKRG D+L+VPM+SLDQLSRYVGGE P+LS+LGGSDW Sbjct: 559 EMVERTIGGARREYLVIEYAPSKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGSDW 618 Query: 593 ANTKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQ 652 ANTK KAR+AVREIA ELV LYA RQ+APGHAFGPDTPWQ E+EDAF FTETIDQLT I Sbjct: 619 ANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKELEDAFAFTETIDQLTVIS 678 Query: 653 EVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT 712 EVK+DMEKPVPMDRV+ GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA QHLQTFT Sbjct: 679 EVKADMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFT 738 Query: 713 NRMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDE 772 RMA FPV V+GLSRFTD +S+ +I G+ +G +D+V+GTHRLLQTG+ WKDLGL+IVDE Sbjct: 739 ERMASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDIVVGTHRLLQTGIRWKDLGLVIVDE 798 Query: 773 EQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYV 832 EQRFGVEHKEHIK++RTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+P+LTYV Sbjct: 799 EQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYV 858 Query: 833 GPHDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETL 892 G + DKQVAAA+RRELLRDGQ FY+HNRV +ID+AA ++R+LVPEARVVVAHGQMNE+TL Sbjct: 859 GAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKKIRELVPEARVVVAHGQMNEDTL 918 Query: 893 EKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERG 952 EKTV+GFW R++D+LVCTTI+ETGLDISNANTLIVERAD+ GLSQLHQLRGRVGRSRERG Sbjct: 919 EKTVQGFWERDFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRERG 978 Query: 953 YAYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGV 1012 YAYFLYP KPLTETAYDRLATI+QN++LGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGV Sbjct: 979 YAYFLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGV 1038 Query: 1013 GFDLYVRLVGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXX 1072 GFDLYVRLVGEAVEA+RAAADGK + + K+VRIDLPVDAH+PP+Y+ S Sbjct: 1039 GFDLYVRLVGEAVEAFRAAADGKPITMDEGTKEVRIDLPVDAHIPPDYVTSDRLRLEGYR 1098 Query: 1073 XXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRL 1132 +DRYGPLPE + E+ + E+ AV+ + +++ Sbjct: 1099 KLAAATDSDGIAAVVEELVDRYGPLPEEVRRLISVAKLRLLCREYQLEEV-AVTGTQLKI 1157 Query: 1133 SPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLVLV 1192 SPM LPDS Q+RLKR+YP YRATT VQ+PLPR G GVG+ R+RD+EL+Q++A +L Sbjct: 1158 SPMSLPDSKQIRLKRIYPSAQYRATTGLVQLPLPRTG-GVGSDRLRDVELLQYIADFILA 1216 Query: 1193 LNGKGQGDV 1201 ++G+ G V Sbjct: 1217 IDGRAAGAV 1225 >tr|C3JX01|C3JX01_RHOER Tax_Id=596309 (mfd)SubName: Full=Transcription-repair coupling factor; EC=3.6.1.-;[Rhodococcus erythropolis SK121] Length = 1208 Score = 1538 bits (3981), Expect = 0.0 Identities = 781/1209 (64%), Positives = 940/1209 (77%), Gaps = 23/1209 (1%) Query: 7 TSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNGPLLVVA 66 +S QT +AGL E+AL+D + VI V P P+L+V Sbjct: 5 SSAQTALAGLAEVALADAAFTPVIESIGSAALDI--VAPKPARPFIAAALAARTPVLLVT 62 Query: 67 ATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXXPDDETL 126 ATGREAD+LT+EL + G VA FPSWETLPHERLSP +TVG PDD + Sbjct: 63 ATGREADDLTSELTEMLGGGVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDASY 122 Query: 127 GAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVDMVGKRG 186 G+PLRV+VTT RSL+QPMAP L +IEP+TL VG E++F+ V+ RLV+++Y+RVDMVGKRG Sbjct: 123 GSPLRVIVTTVRSLVQPMAPGLGEIEPITLRVGTEIDFDSVLVRLVEMAYSRVDMVGKRG 182 Query: 187 EFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAVPCRELL 246 EFAVRGGILD+F PTA+HPVR+EFWGDE+SE+R F++ADQRS+ +V V +V+A PCREL+ Sbjct: 183 EFAVRGGILDLFSPTADHPVRIEFWGDEVSELRYFSVADQRSLADVDVDSVIAPPCRELI 242 Query: 247 MTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIEPTTLTR 306 +T DVR+RAAALAAE N ++ +ML K++ GIPV+GMEALLP+L P E L+ Sbjct: 243 LTADVRDRAAALAAE-----NQADASLVEMLDKISAGIPVEGMEALLPVLKPGELQLLSD 297 Query: 307 HLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEAL-------GA 359 LPEGA +L+CDPEKVRTRA DL++TG+EFLEASW+ A++GG AP+D L GA Sbjct: 298 VLPEGAHILLCDPEKVRTRATDLVRTGQEFLEASWTAASIGGAAPLDTSILNGGGVDLGA 357 Query: 360 SGFVTFXXXXXXXXXGGHPWWTLSQLSDESAVELD--IRSAPSARGSQHNLEEIFAMLRA 417 S + + G PWWT+S L+ + EL+ + +AP RGS L E+F LRA Sbjct: 358 SAYRSLRHVRESAEAAGRPWWTVSPLASGNGEELELPVHAAPQVRGSDDLLAELFVSLRA 417 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLP 477 HV+TGG AA+V G GTA RVVE+LGEA+ A +L+ G P G V VL+G L G+VL Sbjct: 418 HVSTGGRAAIVVAGAGTASRVVERLGEAEVPAKMLDAGATPARGQVAVLRGSLHDGLVLA 477 Query: 478 GAN----LVIITETDLTGNRVTA-NEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFV 532 G + +VI+TE+DLTGNRV A +G++L AKRRN VDPLAL+AGD+VVHDQHGIG+FV Sbjct: 478 GDDSTPGMVIVTESDLTGNRVAAVGDGKRLPAKRRNQVDPLALSAGDMVVHDQHGIGRFV 537 Query: 533 EMTERVVGGARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDW 592 EM ER +GGARREYLV+EYA SKRG D+L+VPM+SLDQLSRYVGGE P+LS+LGGSDW Sbjct: 538 EMVERTIGGARREYLVIEYAPSKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGSDW 597 Query: 593 ANTKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQ 652 ANTK KAR+AVREIA ELV LYA RQ+APGHAFGPDTPWQ E+EDAF FTETIDQLT I Sbjct: 598 ANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKELEDAFAFTETIDQLTVIS 657 Query: 653 EVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT 712 EVK+DMEKPVPMDRV+ GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA QHLQTFT Sbjct: 658 EVKADMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFT 717 Query: 713 NRMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDE 772 RMA FPV V+GLSRFTD +S+ +I G+ +G +D+V+GTHRLLQTG+ WKDLGL+IVDE Sbjct: 718 ERMASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDIVVGTHRLLQTGIRWKDLGLVIVDE 777 Query: 773 EQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYV 832 EQRFGVEHKEHIK++RTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+P+LTYV Sbjct: 778 EQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYV 837 Query: 833 GPHDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETL 892 G + DKQVAAA+RRELLRDGQ FY+HNRV +ID+AA ++R+LVPEARVVVAHGQMNE+TL Sbjct: 838 GAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKKIRELVPEARVVVAHGQMNEDTL 897 Query: 893 EKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERG 952 EKTV+GFW R++D+LVCTTI+ETGLDISNANTLIVERAD+ GLSQLHQLRGRVGRSRERG Sbjct: 898 EKTVQGFWERDFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRERG 957 Query: 953 YAYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGV 1012 YAYFLYP KPLTETAYDRLATI+QN++LGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGV Sbjct: 958 YAYFLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGV 1017 Query: 1013 GFDLYVRLVGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXX 1072 GFDLYVRLVGEAVEA+RAAADGK + + K+VRIDLPVDAH+PP+Y+ S Sbjct: 1018 GFDLYVRLVGEAVEAFRAAADGKPITMDEGTKEVRIDLPVDAHIPPDYVTSDRLRLEGYR 1077 Query: 1073 XXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRL 1132 +DRYGPLPE + E+ + E+ AV+ + +++ Sbjct: 1078 KLAAATDSDGIAAVVEELVDRYGPLPEEVRRLISVAKLRLLCREYQLEEV-AVTGTQLKI 1136 Query: 1133 SPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLVLV 1192 SPM LPDS Q+RLKR+YP YRATT VQ+PLPR G GVG+ R+RD+EL+Q++A +L Sbjct: 1137 SPMSLPDSKQIRLKRIYPSAQYRATTGLVQLPLPRTG-GVGSDRLRDVELLQYIADFILA 1195 Query: 1193 LNGKGQGDV 1201 ++G+ G V Sbjct: 1196 IDGRAAGAV 1204 >tr|D5UVJ4|D5UVJ4_TSUPA Tax_Id=521096 SubName: Full=Transcription-repair coupling factor;[Tsukamurella paurometabola DSM 20162] Length = 1218 Score = 1491 bits (3860), Expect = 0.0 Identities = 766/1149 (66%), Positives = 892/1149 (77%), Gaps = 16/1149 (1%) Query: 61 PLLVVAATGREADELTAELRGVFG-DSVALFPSWETLPHERLSPGVETVGXXXXXXXXXX 119 P+LVV ATGREAD+LT+ELR G D+V FPSWETLPHERLSPG +TVG Sbjct: 58 PVLVVTATGREADDLTSELRETLGADAVTQFPSWETLPHERLSPGADTVGRRLQVLRRLA 117 Query: 120 XPDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRV 179 PDD GAPLR VV T RSL+QPMAP L D VTL G E +FE+++ LV+L+YTRV Sbjct: 118 WPDDAQYGAPLRAVVATVRSLVQPMAPGLGDAPSVTLREGEEFDFEELIETLVELAYTRV 177 Query: 180 DMVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVA 239 DMVGKRGEFAVRGGILD+FP T + PVRVEFWGDEI+++RAF++ADQRS PEV V TV Sbjct: 178 DMVGKRGEFAVRGGILDIFPTTTDLPVRVEFWGDEITDLRAFSVADQRSQPEVQVGTVHV 237 Query: 240 VPCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPI 299 PCRELL+T DVR+RAA L AEH + + +ML KLA+GIPV+GMEAL+P L P Sbjct: 238 YPCRELLLTADVRDRAATLKAEHESD-----AALAEMLEKLAQGIPVEGMEALIPALVPG 292 Query: 300 EPTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEA--L 357 E LT LP+G ++ DPEK+RTRAADL +TG+EFLEASW+ AA+G AP+D L Sbjct: 293 ELQLLTDVLPDGTHTVLLDPEKIRTRAADLARTGQEFLEASWTAAALGSSAPLDPSGIDL 352 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQLS-----DESAVELDIRSAPSARGSQHNLEEIF 412 GAS + GHPWWT+S L+ D+ + + AP+ RGS+ E++F Sbjct: 353 GASAYRGLDDVHASVSAQGHPWWTISPLAAGPDTDDDHLTVHAEHAPAPRGSEAEAEKLF 412 Query: 413 AMLRAHVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCS 472 A LRAH A+GG +V G GT R++E+L +A+ A+ LE G P+ G VGVL+G L + Sbjct: 413 ATLRAHAASGGSGVIVVAGRGTRARILERLRDAEVPASELEAGEGPRPGTVGVLRGSLQT 472 Query: 473 GVVLPGANLVIITETDLTGNRVTA-NEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKF 531 G+ +P LV++ E DLTGNRV +GR+L AKRRN VDPLALTAGDLVVHD+HGIGKF Sbjct: 473 GLTVPSQQLVLLAEPDLTGNRVAGVGDGRRLPAKRRNQVDPLALTAGDLVVHDEHGIGKF 532 Query: 532 VEMTERVVGGARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSD 591 VEM ER V GARREYLV+EYA SKRG DKL+VPM+SLDQLSRYVGGE P+LS++GGSD Sbjct: 533 VEMIERTVAGARREYLVIEYAPSKRGQPGDKLFVPMESLDQLSRYVGGEMPALSKMGGSD 592 Query: 592 WANTKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAI 651 W NTK KAR+AVREIA ELV LYA R +APGHAF PD+PWQ EMEDAF FTET+DQ+T I Sbjct: 593 WQNTKRKARKAVREIAGELVQLYAARNAAPGHAFAPDSPWQREMEDAFPFTETVDQMTVI 652 Query: 652 QEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 711 +VKSDMEK VPMDRV+ GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA QHL+TF Sbjct: 653 GDVKSDMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLKTF 712 Query: 712 TNRMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVD 771 +RM GFPVTVKGLSRFTD E+ V+EGL DGSVD+V+GTHRLLQTGV WKDLGL++VD Sbjct: 713 VDRMQGFPVTVKGLSRFTDRHETEQVLEGLADGSVDIVVGTHRLLQTGVRWKDLGLVVVD 772 Query: 772 EEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 831 EEQRFGVEHKEHIK++RT+VDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+PVLTY Sbjct: 773 EEQRFGVEHKEHIKALRTNVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTY 832 Query: 832 VGPHDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEET 891 VGP+D+KQVAAA+RRELLRDGQ FY+HNRV +ID+AA ++R +VPEARVVVAHGQM EE Sbjct: 833 VGPYDNKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKQIRDMVPEARVVVAHGQMGEEA 892 Query: 892 LEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 951 LE TV+GFWNRE+D+LVCTTIVETGLDISNANTLIVERA+ GLSQLHQLRGRVGRSRER Sbjct: 893 LESTVQGFWNREFDVLVCTTIVETGLDISNANTLIVERAENLGLSQLHQLRGRVGRSRER 952 Query: 952 GYAYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAG 1011 GYAYFLYP KPLTETAYDRL+TIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAG Sbjct: 953 GYAYFLYPSEKPLTETAYDRLSTIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAG 1012 Query: 1012 VGFDLYVRLVGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXX 1071 VGFDLYVRLVGEAVEA+RAAADG + P+EQK+VRIDLPVDAH+PP+Y+ S Sbjct: 1013 VGFDLYVRLVGEAVEAFRAAADGTPITLPEEQKEVRIDLPVDAHIPPDYVTSDRLRLEAY 1072 Query: 1072 XXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVR 1131 DRYGP P + G+TE+ +VS +TVR Sbjct: 1073 RKLAAAHDDSAVAEVLTELTDRYGPPPVEVERLAAIARLRSLARAAGVTEV-SVSGTTVR 1131 Query: 1132 LSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRA-GEGVGAPRIRDLELVQWVAGLV 1190 +SPM L DS QLRLKR+YPGG YRATT TV P+PR G GVG+ R+RD+ L+Q VA + Sbjct: 1132 VSPMELRDSQQLRLKRLYPGGSYRATTRTVTFPIPRVEGGGVGSERVRDIALLQVVADFL 1191 Query: 1191 LVLNGKGQG 1199 ++GKG G Sbjct: 1192 AAMDGKGAG 1200 >tr|D0L750|D0L750_GORB4 Tax_Id=526226 SubName: Full=Transcription-repair coupling factor;[Gordonia bronchialis] Length = 1195 Score = 1422 bits (3680), Expect = 0.0 Identities = 757/1191 (63%), Positives = 878/1191 (73%), Gaps = 24/1191 (2%) Query: 8 SVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNGPLLVVAA 67 S + GL ELA +D ++ + + PLLVV+A Sbjct: 2 STPRALVGLSELACADTAISGIRARRDEVHVDLTAPDAARPFVVACLAKDADAPLLVVSA 61 Query: 68 TGREADELTAELRGVFG--DSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXXPDDET 125 GREAD+LTAEL + D+VA FPSWETLPHERLSP +TVG P D Sbjct: 62 NGREADDLTAELAELLDEPDAVAQFPSWETLPHERLSPSADTVGARLAVLHRLANPGD-- 119 Query: 126 LGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVDMVGKR 185 +PLRVVVTT RSL+QPMAP L D+ ++L+ G E++F+ ++ LV+++Y RVDMVG+R Sbjct: 120 --SPLRVVVTTVRSLVQPMAPGLGDVATISLAEGFEIDFDGLLTDLVEMAYERVDMVGRR 177 Query: 186 GEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAVPCREL 245 GEFAVRGGILDVFP TA++PVRVEFWGDEI+EMRAF++ADQRS PEV V PCREL Sbjct: 178 GEFAVRGGILDVFPTTADYPVRVEFWGDEITEMRAFSVADQRSQPEVEATRVDIHPCREL 237 Query: 246 LMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIEPTTLT 305 L+TD++R RAA LA++ T+ +ML KLAEGIPV+GMEAL+P L LT Sbjct: 238 LLTDEIRTRAAELASQFEGDP-----TLAEMLTKLAEGIPVNGMEALIPALVDGRMQLLT 292 Query: 306 RHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPID---LEALG---- 358 +P G VL+ DPEKVRTRAADL KTG EFLEASW+ AA+G P+D +ALG Sbjct: 293 EVVPAGTRVLILDPEKVRTRAADLSKTGAEFLEASWTAAAMGAQGPLDGRSSQALGVDLQ 352 Query: 359 ASGFVTFXXXXXXXXXGGHPWWTLSQLS--DESAVELDIRSAPSARGSQHNLEEIFAMLR 416 AS + G WWT+S L+ D+ V LD+ P+ RG + + +FA LR Sbjct: 353 ASAYRPLDEVRETTLAAGRSWWTISPLATGDDHEVVLDLAPGPAPRGDDNEIVAVFAQLR 412 Query: 417 AHVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVL 476 AHV G AA+V G GTA RV E+L +A+ I EPG P G V V G L G+V Sbjct: 413 AHVRAGQTAAIVVAGKGTAQRVGERLADAEVPHVIAEPGHRPAPGEVSVFGGTLRHGLVC 472 Query: 477 PGANLVIITETDLTGNRVT-ANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMT 535 P A LVI+TE DLTG RV +GRKL AKRRN VDPLALTAGDLVVHDQHGIGKFVEM Sbjct: 473 PDAGLVIVTEADLTGTRVANVRDGRKLPAKRRNQVDPLALTAGDLVVHDQHGIGKFVEMI 532 Query: 536 ERVVGGARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANT 595 ER V GARREYLVLEYA SKRG D+LYVPMD+LDQLSRYVGGE PSLS+LGGSDW NT Sbjct: 533 ERTVSGARREYLVLEYAPSKRGQPGDRLYVPMDALDQLSRYVGGEQPSLSKLGGSDWQNT 592 Query: 596 KTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVK 655 K KAR+AVREIA ELV LYA R +APGHAFGPDTPWQ EMEDAF FTET+DQ+T I EVK Sbjct: 593 KRKARKAVREIAGELVQLYAARHAAPGHAFGPDTPWQQEMEDAFDFTETVDQMTVIGEVK 652 Query: 656 SDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRM 715 +DME+PVPMDRVI GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTT+LA QHLQTF+ RM Sbjct: 653 ADMERPVPMDRVIVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTILAQQHLQTFSERM 712 Query: 716 AGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQR 775 +GFPV V+GLSRFTD ESR +I+ + G VD+VIGTHRLLQTGVTWKDLGL+IVDEEQR Sbjct: 713 SGFPVRVRGLSRFTDARESREIIDAMATGEVDIVIGTHRLLQTGVTWKDLGLVIVDEEQR 772 Query: 776 FGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPH 835 FGVEHKEHIKS+RTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+PVLTYVG + Sbjct: 773 FGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAY 832 Query: 836 DDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKT 895 KQVAAA+RRELLRDGQ FY+HNRV TID+ A + +VPEARVVVAHGQMNE+ LEKT Sbjct: 833 APKQVAAAIRRELLRDGQVFYVHNRVSTIDKTARDIAAMVPEARVVVAHGQMNEDQLEKT 892 Query: 896 VEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAY 955 V GFWNRE+D+LVCTTI+ETGLDISNANTLIV+RA+ GLSQLHQLRGRVGRSRERGYAY Sbjct: 893 VSGFWNREFDVLVCTTIIETGLDISNANTLIVDRAENLGLSQLHQLRGRVGRSRERGYAY 952 Query: 956 FLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFD 1015 LY P +PLTETAYDRLATIAQNNELGAGMAVA+KDLE+RGAGNVLGAEQSGHVAGVGFD Sbjct: 953 LLYSPERPLTETAYDRLATIAQNNELGAGMAVALKDLELRGAGNVLGAEQSGHVAGVGFD 1012 Query: 1016 LYVRLVGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXXXXX 1075 LYVRLVGEAVEAYRAAADG+ V T +E ++VRIDLPVDAH+P EY+ S Sbjct: 1013 LYVRLVGEAVEAYRAAADGQPV-TSRETEEVRIDLPVDAHIPVEYVDSDRLRLEAYRKLA 1071 Query: 1076 XXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRLSPM 1135 DRYG P E GITEIG ++ + +++SP+ Sbjct: 1072 SAIDDAAVDGVIAELTDRYGEPPVETTRLAAIARLRLRCRERGITEIG-LAGTGLKISPL 1130 Query: 1136 VLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWV 1186 L DS Q+RLKR+Y +YRATTS V +P+PR G GVG+ R+RD EL+ ++ Sbjct: 1131 PLLDSEQVRLKRLYSAANYRATTSVVTLPIPRTG-GVGSARLRDDELIVYL 1180 >tr|A4F7Z2|A4F7Z2_SACEN Tax_Id=405948 (mfd)SubName: Full=Transcription-repair coupling factor;[Saccharopolyspora erythraea] Length = 1195 Score = 1351 bits (3496), Expect = 0.0 Identities = 717/1200 (59%), Positives = 864/1200 (72%), Gaps = 30/1200 (2%) Query: 12 PIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQ-NGPLLVVAATGR 70 P+ GL+E L D +++ V+ GP + P+L+V ATGR Sbjct: 6 PLRGLLETMLRDSAVRQVVEAVDRPRLVLE--GPAAARPLAAAALAAADRPVLLVTATGR 63 Query: 71 EADELTAELRGVFG-DSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXXPDDETLGAP 129 EA+E+ A + + G D V +FPSWETLPHERLSP +TVG P++ G Sbjct: 64 EAEEVAAAVSDLIGSDGVEVFPSWETLPHERLSPRADTVGRRLAVLRRLAHPEEHDHGR- 122 Query: 130 LRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVDMVGKRGEFA 189 +RV+VTT RSL+QP+AP L ++ PV L VG E +FE++V +L L+Y RVDMV KRGEFA Sbjct: 123 IRVLVTTVRSLIQPIAPGLGELAPVRLRVGDEHDFEELVEKLAALAYNRVDMVEKRGEFA 182 Query: 190 VRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAVPCRELLMTD 249 VRGGI+DVFPPT EHP+RVEFWGDE++E+R F++ADQRS+PE T+ A CRELL+T+ Sbjct: 183 VRGGIVDVFPPTEEHPLRVEFWGDEVTEVRPFSVADQRSLPEAQDTTLFAPACRELLITE 242 Query: 250 DVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIEPTTLTRHLP 309 V+ERAA LA +H + + +ML K+A G PV+GMEAL+P L E LT +P Sbjct: 243 QVQERAAKLAEQHEADAH-----LNEMLGKIAGGAPVEGMEALIPALCEGEMRLLTDLVP 297 Query: 310 EGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALGASGFVTFXXXX 369 G V+V DPEKVR RAADL++TG+EFLEASW AA GG APIDL GAS + Sbjct: 298 GGTHVVVADPEKVRARAADLVRTGQEFLEASWMVAADGGRAPIDL---GASAYRGLAEVA 354 Query: 370 XXXXXGGHPWWTLSQLS------DESAVELDIRSAPSARGSQHNLEEIFAMLRAHVATGG 423 G PWWTL+QLS D+ V L ++ + RG +E FA LRAH GG Sbjct: 355 AHTESTGLPWWTLTQLSSEDTEDDDGVVRLALKQVDAYRGE---VERAFADLRAHTTAGG 411 Query: 424 YAAVVTPGIGTAHRVVEQLGEADTAATILEPGTA--PKAGVVGVLKGPLCSGVVLPGANL 481 A +V G GTA R V+QL E + A + E G P+ GVV V +G L G P L Sbjct: 412 AAVLVVAGAGTAQRAVQQLREGELPARLAEDGLTAEPEPGVVTVARGGLEDGFAAPEVAL 471 Query: 482 VIITETDLTGNR--VTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVV 539 V++TE DLTG R + + R++ ++RRN VDPLAL AGD VVH+QHGIGK+VEM +R V Sbjct: 472 VVLTEADLTGGRGGTSTKDMRRMPSRRRNAVDPLALKAGDFVVHEQHGIGKYVEMVQRTV 531 Query: 540 GGARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANTKTKA 599 GGA REYLVLEYASSKRG D+L+VP D LD++SRYVGGE P+L++LGGSDW NTK KA Sbjct: 532 GGATREYLVLEYASSKRGQPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKA 591 Query: 600 RRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKSDME 659 R+AV+EIA+ELV LYA RQSAPGHAFG DTPWQ E+EDAF +TET DQL AI EVK+DM+ Sbjct: 592 RKAVKEIAAELVQLYAARQSAPGHAFGADTPWQRELEDAFPYTETGDQLAAIDEVKADMQ 651 Query: 660 KPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFP 719 + VPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA QHL TFT+RM FP Sbjct: 652 RAVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFTDRMRSFP 711 Query: 720 VTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGVE 779 VTVKGLSRFTDP ES GL +G+VDVVIGTHRLLQTGV +KDLGL+IVDEEQRFGVE Sbjct: 712 VTVKGLSRFTDPLESEQTTTGLAEGTVDVVIGTHRLLQTGVRYKDLGLVIVDEEQRFGVE 771 Query: 780 HKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQ 839 HKEHIK++RTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+PVLTYVG +D+KQ Sbjct: 772 HKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYDEKQ 831 Query: 840 VAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKTVEGF 899 VAAA+RRELLRDGQ F++HNRV+TI++AA +R+LVPEAR+V AHGQMNE+ LEK ++GF Sbjct: 832 VAAAIRRELLRDGQVFFVHNRVQTIEKAARHLRELVPEARIVTAHGQMNEDRLEKIIQGF 891 Query: 900 WNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYP 959 W RE+D+LVCTTIVETGLDISNANTLIVER+D GLSQLHQLRGRVGR+RERGYAYFLYP Sbjct: 892 WEREHDVLVCTTIVETGLDISNANTLIVERSDVLGLSQLHQLRGRVGRARERGYAYFLYP 951 Query: 960 PNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVR 1019 KPLT+TA+DRLATIAQN+ELGAGMAVAMKDLEIRGAGN+LGAEQSGH+AGVGFDLYVR Sbjct: 952 EEKPLTDTAHDRLATIAQNSELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVR 1011 Query: 1020 LVGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXXXXXXXXX 1079 LVGEAVEA+R A + A +E +VR+DLPVDAH+P +Y+ Sbjct: 1012 LVGEAVEAFRRHAGAEPGAGEEELPEVRVDLPVDAHIPHDYVPGERLRLEAYRKIAAAGD 1071 Query: 1080 XXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRLSPMVLPD 1139 DRYG LPEP + G+TE+ +++R +P+ L D Sbjct: 1072 TEALDAVRAELTDRYGSLPEPVERLLKVAAFRQLCRAHGVTEV-TQQGTSLRAAPLELAD 1130 Query: 1140 SAQLRLKRMYPGGHYRATTSTVQVPLP---RAGEGVGAPRIRDLELVQWVAGLVLVLNGK 1196 S +RLKR+YP Y+A TV VP P AG +GAP +RD L+ W A L+ L G+ Sbjct: 1131 SQLVRLKRLYPKAVYKAAVRTVSVPRPTEGAAGGRIGAPPLRDEALLDWCAKLLESLAGR 1190 >tr|C7MZH3|C7MZH3_SACVD Tax_Id=471857 SubName: Full=Transcription-repair coupling factor Mfd;[Saccharomonospora viridis] Length = 1199 Score = 1342 bits (3474), Expect = 0.0 Identities = 714/1204 (59%), Positives = 854/1204 (70%), Gaps = 31/1204 (2%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 MT + S ++GL+ LSDP+L+ V+ + Sbjct: 1 MTDSPNGSSSGALSGLLSALLSDPALRGVVEQAGAPLLDLDGSTATHQLVVAALAADRGA 60 Query: 61 --PLLVVAATGREADELTAELRGVFGDS-VALFPSWETLPHERLSPGVETVGXXXXXXXX 117 P+L V TGR+A+ELTA LR + G++ VA FPSWETLPHERLSP +TVG Sbjct: 61 GRPVLAVTPTGRQAEELTAALRSLLGENLVADFPSWETLPHERLSPRADTVGKRLEVLRR 120 Query: 118 XXXPDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYT 177 PD LRVVV T RSL+QPMAP L + PV L VG E +FE V+ +LV+L+YT Sbjct: 121 LAQPDH----GGLRVVVATVRSLIQPMAPGLGGLHPVELRVGQESDFEAVLDQLVELAYT 176 Query: 178 RVDMVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTV 237 RVDMV KRGEFAVRGGILD+F PTAEHP R+EFWGDE+SE+RAFA++DQRS+P V V Sbjct: 177 RVDMVEKRGEFAVRGGILDIFGPTAEHPHRIEFWGDEVSEIRAFAVSDQRSLPG-EVTEV 235 Query: 238 VAVPCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLH 297 +A PCRE+L+T DV+ RAA LA H + +ML KLA+G+P +GMEAL+P+L Sbjct: 236 IAPPCREILLTPDVKARAAELARTHADNAQ-----LSEMLTKLADGVPCEGMEALIPVLC 290 Query: 298 PIEPTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEAL 357 E LT LPEG V++ +PEK R RAADL++TG+EFLEASW +AA GG+AP+DL Sbjct: 291 EGELQLLTDALPEGTHVVLIEPEKSRARAADLVRTGQEFLEASWMSAADGGEAPLDL--- 347 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQLSDES-AVELDIRSAPSARGSQHNLEEIFAMLR 416 GAS + WWTLSQL+ ES A + I SAP+ RG LE + LR Sbjct: 348 GASAYRDLDEVRAHATETNRCWWTLSQLTSESGAHHVAIDSAPAYRGE---LERVATDLR 404 Query: 417 AHVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTA--PKAGVVGVLKGPLCSGV 474 AH A+GG A VV G GTA R V+QL A+ AT+ G PK GVV V G + G Sbjct: 405 AHTASGGAAVVVVAGAGTAKRAVDQLSGAEVPATLATEGLTEEPKPGVVTVTCGGISDGF 464 Query: 475 VLPGANLVIITETDLTGNRVTANEGR-----KLAAKRRNVVDPLALTAGDLVVHDQHGIG 529 V PG+ LV+++E D+TG TA K+ ++RRN VDPLAL +GD VVHDQHGIG Sbjct: 465 VAPGSALVVLSEADITGRGATAGRSNVDLNTKMPSRRRNAVDPLALKSGDYVVHDQHGIG 524 Query: 530 KFVEMTERVVGGARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGG 589 +FVEM R VGGA REYLV+EYA SKRG D+L+VP D LD++SRYVGGE P+L+++GG Sbjct: 525 RFVEMVRRTVGGATREYLVIEYAPSKRGHPGDRLFVPTDQLDEVSRYVGGETPTLNKMGG 584 Query: 590 SDWANTKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLT 649 +DW TK +AR+AV+EIA+ELV LYA RQ+APGHAF PDTPWQ E+EDAF FTET DQL Sbjct: 585 ADWKKTKARARKAVKEIAAELVQLYAARQAAPGHAFSPDTPWQRELEDAFPFTETADQLA 644 Query: 650 AIQEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQ 709 AI EVK DME+ VPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQV VLVPTT+LA QHL Sbjct: 645 AIDEVKRDMERDVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTILAQQHLA 704 Query: 710 TFTNRMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLII 769 TF+ RM FPVT+KGLSRFTDP E+ VI GL DG VD+VIGTHRLLQ+ V +KDLGL+I Sbjct: 705 TFSERMRSFPVTIKGLSRFTDPHEAEQVINGLADGEVDIVIGTHRLLQSNVRYKDLGLVI 764 Query: 770 VDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVL 829 VDEEQRFGVEHKEHIK++RTHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPE+R+P+L Sbjct: 765 VDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPIL 824 Query: 830 TYVGPHDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNE 889 TYVG +DDKQVAAA+RRELLRDGQ FY+HNRV +I+ AA R+R+LVPEARVV AHGQMNE Sbjct: 825 TYVGAYDDKQVAAAIRRELLRDGQVFYVHNRVSSIERAARRLRELVPEARVVTAHGQMNE 884 Query: 890 ETLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSR 949 LE+ ++GFW REYD+LVCTTIVETGLDISNANTLIVE AD GL+QLHQLRGRVGR R Sbjct: 885 HRLEQIIQGFWEREYDVLVCTTIVETGLDISNANTLIVEHADQLGLAQLHQLRGRVGRGR 944 Query: 950 ERGYAYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHV 1009 ERGYAYFLYP +KPLTETA+DRLATIAQN ELGAGMAVAMKDLEIRGAGN+LGAEQSGH+ Sbjct: 945 ERGYAYFLYPADKPLTETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNILGAEQSGHI 1004 Query: 1010 AGVGFDLYVRLVGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXX 1069 AGVGFDLYVRLVGEAVEA+R A +VR+DLPVDAH+P +Y+ Sbjct: 1005 AGVGFDLYVRLVGEAVEAFRRHAGAGEPEEEPTPTEVRVDLPVDAHIPHDYVPGERLRLE 1064 Query: 1070 XXXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSAST 1129 +DRYG LP P + E G+TE+ + + Sbjct: 1065 AYRKIAAAPDAEGLDAVREELVDRYGKLPAPVERLLAVAAFRQVCREAGVTEV-TLQGNN 1123 Query: 1130 VRLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPR---AGEGVGAPRIRDLELVQWV 1186 +R +P+ L DS +RLKR+YP ++A T+TV VP P AG +GAP +RD L+ W Sbjct: 1124 IRFTPLQLADSQLVRLKRLYPRAVFKAVTNTVSVPRPTEGPAGGRIGAPVLRDEPLLDWC 1183 Query: 1187 AGLV 1190 L+ Sbjct: 1184 TTLI 1187 >tr|C6WJJ6|C6WJJ6_ACTMD Tax_Id=446462 SubName: Full=Transcription-repair coupling factor;[Actinosynnema mirum] Length = 1187 Score = 1340 bits (3467), Expect = 0.0 Identities = 713/1206 (59%), Positives = 858/1206 (71%), Gaps = 39/1206 (3%) Query: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNG 60 M+ PG P++GL+ L D +L+ + GP + Sbjct: 1 MSQPG------PLSGLLTAVLPDKALRALADAAGSPELELE--GPPAARPLVAAALSRTS 52 Query: 61 PLLVVAATGREADELTAELRGVFG-DSVALFPSWETLPHERLSPGVETVGXXXXXXXXXX 119 P+L V ATGREA+EL + LR + G ++VA+FPSWETLPHERLSP +TVG Sbjct: 53 PVLAVTATGREAEELASVLRDLVGPEAVAIFPSWETLPHERLSPRADTVGARLQVLRRLA 112 Query: 120 XPDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRV 179 P D PLR VV T RSL+QPMAP L D+EP+ L+ G+E +F+ ++ RL +L+YTRV Sbjct: 113 HPGDR----PLRAVVATVRSLIQPMAPGLGDLEPLDLATGSEHDFDALLHRLAELAYTRV 168 Query: 180 DMVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVA 239 DMV KRGEFAVRGGILDVFPPTAEHP+RVEFWGDE++E+R F++ADQRS+P+ V A Sbjct: 169 DMVEKRGEFAVRGGILDVFPPTAEHPLRVEFWGDEVTEIRPFSVADQRSLPK-QVDAFTA 227 Query: 240 VPCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPI 299 PCRELL+T+ VR RA LAAEH + +ML KLAEGIP +GMEAL+P L Sbjct: 228 PPCRELLLTERVRARAQELAAEHEADAQ-----LAEMLTKLAEGIPSEGMEALIPALCDG 282 Query: 300 EPTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALGA 359 E LT +P+G VLV DPEK+R RA DL++TG+EFLEASW AA GG APIDL GA Sbjct: 283 ELQLLTDLVPDGTHVLVNDPEKIRARARDLVRTGQEFLEASWMAAAGGGKAPIDL---GA 339 Query: 360 SGFVTFXXXXXXXXXGGHPWWTLSQLSDESA--VELDIRSAPSARGSQHNLEEIFAMLRA 417 S + + PWWTLSQL+ E + + L+ + + +G +++ FA LRA Sbjct: 340 SAYRSLDEVADAARAADKPWWTLSQLTTEGSDVLRLEFKHVHAYQG---DVDRAFADLRA 396 Query: 418 HVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEP-GTAPKAGVVGVLKGPLCSGVVL 476 H A GG A +V PG GTA R EQL EA A ++ P+ G V V++G L G L Sbjct: 397 HTAAGGTAVLVVPGTGTAQRATEQLREAQVGAVCVDSLDEPPRTGAVTVVRGALEDGFAL 456 Query: 477 PGANLVIITETDLTGNR--VTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEM 534 P LV++TETDLTG R + + R++ ++RRN VDPLAL GD VVH+QHGIG++VEM Sbjct: 457 PELALVVLTETDLTGGRGGTSTKDMRRMPSRRRNAVDPLALRTGDYVVHEQHGIGRYVEM 516 Query: 535 TERVVGGARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWAN 594 +R V GA REYLVLEYASSKRG D+L+VP D LD++SRYVGGE P+L++LGGSDW N Sbjct: 517 VQRTVAGATREYLVLEYASSKRGQPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKN 576 Query: 595 TKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEV 654 TK KA++AV++IA+ELV LYA RQSAPGHAF PDTPWQ E+EDAF FTET+DQ+ AI EV Sbjct: 577 TKAKAKKAVKQIAAELVQLYAARQSAPGHAFAPDTPWQRELEDAFPFTETVDQMAAIDEV 636 Query: 655 KSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 714 K+DME+ VPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQV VLVPTTLLA QHL TFT R Sbjct: 637 KADMERGVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHLNTFTER 696 Query: 715 MAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQ 774 M FPV V+GLSRFTDP E+ GL +G VDVVIGTHRLLQ G+ +KDLGL+IVDEEQ Sbjct: 697 MRAFPVVVRGLSRFTDPTEAEQTTTGLAEGDVDVVIGTHRLLQKGLRYKDLGLVIVDEEQ 756 Query: 775 RFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIK++RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEER+P+LTYVG Sbjct: 757 RFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPILTYVGG 816 Query: 835 HDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEK 894 + DKQV AA+RRELLRDGQ FY+HNRV +I++AA R+R+L PEARVV AHGQMNE+ LEK Sbjct: 817 YADKQVGAAIRRELLRDGQVFYVHNRVSSIEKAARRIRELAPEARVVTAHGQMNEDKLEK 876 Query: 895 TVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 ++GFW REYD+LV TTIVETGLDISNANTLIVER D GLSQLHQLRGRVGR RERGYA Sbjct: 877 IIQGFWEREYDVLVSTTIVETGLDISNANTLIVERGDLLGLSQLHQLRGRVGRGRERGYA 936 Query: 955 YFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGF 1014 YFLYPP PL+ETA+DRLATIAQN ELGAGMAVAMKDLEIRGAGN+LGAEQSGH+AGVGF Sbjct: 937 YFLYPPESPLSETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGF 996 Query: 1015 DLYVRLVGEAVEAYR--AAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXXXX 1072 DLYVRLVGEAVEA+R A ADG+ P E VR++LPVDAH+P +Y+ Sbjct: 997 DLYVRLVGEAVEAFRRSAGADGELEVEPAE---VRVELPVDAHIPHDYVPGERLRLEAYR 1053 Query: 1073 XXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTVRL 1132 DRYG P P + G+TE+ A+ S++R Sbjct: 1054 KIAAAVDEAGLTAVRDELKDRYGAPPLPVERLLDVARLRHTCRAHGVTEV-ALQGSSIRF 1112 Query: 1133 SPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLP---RAGEGVGAPRIRDLELVQWVAGL 1189 +P+ L DS +RL+R++P Y+ ST+ P P AG +GAP +RD EL+ W A Sbjct: 1113 APLELKDSQVVRLRRLHPKAVYKQAVSTITTPRPTEGAAGGRMGAPPLRDQELLAWCAHF 1172 Query: 1190 VLVLNG 1195 + L G Sbjct: 1173 LESLAG 1178 >tr|Q8FQT5|Q8FQT5_COREF Tax_Id=152794 SubName: Full=Putative transcription-repair coupling factor;[Corynebacterium efficiens] Length = 1218 Score = 1287 bits (3331), Expect = 0.0 Identities = 684/1226 (55%), Positives = 837/1226 (68%), Gaps = 45/1226 (3%) Query: 13 IAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNGPLLVVAATGREA 72 +AGL+++A +DP L+ +I G + P+LVV ATGREA Sbjct: 5 LAGLLKVAATDPKLKGMISNVGARNLHL--TGVDQARPWVIGTLAHHAPVLVVTATGREA 62 Query: 73 DELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXXPDDETLGAPLRV 132 ++LTAELR + GD VA FPSWETLPHERLSPGV+ VG DD ++ Sbjct: 63 EDLTAELRAMMGDKVAWFPSWETLPHERLSPGVDIVGRRAQVLNKL---DDA------KI 113 Query: 133 VVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVDMVGKRGEFAVRG 192 +VT R+ QP+ + +P+ L GAE +F + LV +Y VDMV KRGEFA RG Sbjct: 114 IVTAARAFCQPVLKEAAGRQPLILREGAEADFSALGEELVFRAYKNVDMVAKRGEFATRG 173 Query: 193 GILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAVPCRELLMTDDVR 252 GILDVFP T ++PVR+EFWGDE+S++R F++ADQR+IPE+ + + P RELL+TD+V Sbjct: 174 GILDVFPTTLDYPVRIEFWGDEVSDIRQFSVADQRTIPEMTLDEIEIYPARELLITDEVA 233 Query: 253 ERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIEPTTLTRHLPEGA 312 RAA L +HP T+ +ML+++++ VDGMEAL+P L L +PE Sbjct: 234 ARAAELMVKHPGNP-----TLVEMLSRISDRTDVDGMEALIPALVDTPMVPLLELMPENT 288 Query: 313 PVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALG--ASGFVTFXXXXX 370 ++V PEKVRTR ADL T EF+ A W AA+G D P+ ++ L AS + ++ Sbjct: 289 HIMVIAPEKVRTRIADLEATDAEFMAAGWEAAAMGADGPVSVKGLDLEASSYRSYDSLEV 348 Query: 371 XXXXGGHPWWTLS-----QLSDESAVELDIRSAPSARGSQHNLEEIFAMLRAHVATGGYA 425 PWWT + + SD + LD P+ RG + E+ A+L AH GG A Sbjct: 349 SASTSNLPWWTFAPTGMFEASDAETLPLDFEPGPTPRGDLEAINEMMALLLAHTKAGGRA 408 Query: 426 AVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPGAN----- 480 A + P G R+VE+ E + PG P G V + +G+V P Sbjct: 409 AFIAPSEGAIRRMVERFAEQGIPTHVATPGWEPSPGQVTLYHALSHAGLVFPKVRKHRDA 468 Query: 481 ----LVIITETDLTGNRVTANEGRKLA-AKRRNVVDPLALTAGDLVVHDQHGIGKFVEMT 535 LV+ITETDLTGNRV G K A+RRN VDPLALT GDLVVH+ HGIG+F++MT Sbjct: 469 DALPLVVITETDLTGNRVGDIAGAKRRPARRRNKVDPLALTPGDLVVHETHGIGRFIKMT 528 Query: 536 ERVVGG----ARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSD 591 ER + +RREY+VLEYA SKRG D+LYVPMDSLD LSRYVGGE P+LS++GGSD Sbjct: 529 ERTISTGDETSRREYIVLEYAPSKRGQPGDQLYVPMDSLDMLSRYVGGEKPTLSKMGGSD 588 Query: 592 WANTKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAI 651 W NTK KAR AVREIA ELV LYAKRQ+APGHAFGPDTPWQ EMED F + ET DQ+ AI Sbjct: 589 WKNTKKKARAAVREIAGELVELYAKRQAAPGHAFGPDTPWQKEMEDNFPYVETEDQMLAI 648 Query: 652 QEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 711 VK DMEKPVPMDRVI GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTTLLA QH TF Sbjct: 649 DAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHKSTF 708 Query: 712 TNRMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVD 771 RMAGFPVT+ GLSRFT AES+ + GL G VD+V+GTHRLLQTGV WK+LGL+IVD Sbjct: 709 EERMAGFPVTIHGLSRFTSTAESKETLAGLASGEVDIVVGTHRLLQTGVQWKNLGLVIVD 768 Query: 772 EEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 831 EEQRFGVEHKEHIK++R+HVDVLTMSATPIPRTLEMS+AGIREM+T+LTPPE+R+P+LTY Sbjct: 769 EEQRFGVEHKEHIKALRSHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTY 828 Query: 832 VGPHDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEET 891 VGP++DKQVAA++RRELLRDGQ F+IHN+V I++ A +R LVPEARVVVAHGQM+EE Sbjct: 829 VGPYEDKQVAASIRRELLRDGQVFFIHNKVADIEKKARELRDLVPEARVVVAHGQMSEEL 888 Query: 892 LEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 951 LE+TV+GFW+REYD+LVCTTIVETGLDI+NANTLIVE A GLSQLHQLRGRVGRSRER Sbjct: 889 LEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRER 948 Query: 952 GYAYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAG 1011 GYAYFLYP LTET+YDRLATIAQNN+LGAGMAVAMKDLE+RGAGNVLGAEQSGH+AG Sbjct: 949 GYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAG 1008 Query: 1012 VGFDLYVRLVGEAVEAYRAAADGKTV-ATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 VGFDLYVRLVGEAVEAYRA ADGK+V T + +VR+DLPVDAH+P YI S Sbjct: 1009 VGFDLYVRLVGEAVEAYRALADGKSVDGTVKGPTEVRVDLPVDAHIPENYINSERLRLEI 1068 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYGP+PE G+T++ AV + + Sbjct: 1069 YRKLATSESESDLQLAVEEMEDRYGPIPEEVSRLLAVARLRHQMRAAGLTDV-AVQGTRI 1127 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 ++ P+ L DS Q+RLKR++P YRA +QV P+AG V P +RD++L+QWV+ + Sbjct: 1128 KIHPVELKDSQQVRLKRLFPSATYRAAAKAIQVSFPKAGRNVTDPLLRDVDLLQWVSDFI 1187 Query: 1191 LVLNGKGQGDVDMSKFSNP-AGEAKR 1215 + D+D P AG+ K+ Sbjct: 1188 AKM-----FDIDERDVRGPRAGKGKK 1208 >tr|C8NN51|C8NN51_COREF Tax_Id=196164 (mfd)SubName: Full=Transcription-repair coupling factor; EC=3.6.1.-;[Corynebacterium efficiens YS-314] Length = 1215 Score = 1287 bits (3331), Expect = 0.0 Identities = 684/1226 (55%), Positives = 837/1226 (68%), Gaps = 45/1226 (3%) Query: 13 IAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNGPLLVVAATGREA 72 +AGL+++A +DP L+ +I G + P+LVV ATGREA Sbjct: 2 LAGLLKVAATDPKLKGMISNVGARNLHL--TGVDQARPWVIGTLAHHAPVLVVTATGREA 59 Query: 73 DELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXXPDDETLGAPLRV 132 ++LTAELR + GD VA FPSWETLPHERLSPGV+ VG DD ++ Sbjct: 60 EDLTAELRAMMGDKVAWFPSWETLPHERLSPGVDIVGRRAQVLNKL---DDA------KI 110 Query: 133 VVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVDMVGKRGEFAVRG 192 +VT R+ QP+ + +P+ L GAE +F + LV +Y VDMV KRGEFA RG Sbjct: 111 IVTAARAFCQPVLKEAAGRQPLILREGAEADFSALGEELVFRAYKNVDMVAKRGEFATRG 170 Query: 193 GILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAVPCRELLMTDDVR 252 GILDVFP T ++PVR+EFWGDE+S++R F++ADQR+IPE+ + + P RELL+TD+V Sbjct: 171 GILDVFPTTLDYPVRIEFWGDEVSDIRQFSVADQRTIPEMTLDEIEIYPARELLITDEVA 230 Query: 253 ERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIEPTTLTRHLPEGA 312 RAA L +HP T+ +ML+++++ VDGMEAL+P L L +PE Sbjct: 231 ARAAELMVKHPGNP-----TLVEMLSRISDRTDVDGMEALIPALVDTPMVPLLELMPENT 285 Query: 313 PVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALG--ASGFVTFXXXXX 370 ++V PEKVRTR ADL T EF+ A W AA+G D P+ ++ L AS + ++ Sbjct: 286 HIMVIAPEKVRTRIADLEATDAEFMAAGWEAAAMGADGPVSVKGLDLEASSYRSYDSLEV 345 Query: 371 XXXXGGHPWWTLS-----QLSDESAVELDIRSAPSARGSQHNLEEIFAMLRAHVATGGYA 425 PWWT + + SD + LD P+ RG + E+ A+L AH GG A Sbjct: 346 SASTSNLPWWTFAPTGMFEASDAETLPLDFEPGPTPRGDLEAINEMMALLLAHTKAGGRA 405 Query: 426 AVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPGAN----- 480 A + P G R+VE+ E + PG P G V + +G+V P Sbjct: 406 AFIAPSEGAIRRMVERFAEQGIPTHVATPGWEPSPGQVTLYHALSHAGLVFPKVRKHRDA 465 Query: 481 ----LVIITETDLTGNRVTANEGRKLA-AKRRNVVDPLALTAGDLVVHDQHGIGKFVEMT 535 LV+ITETDLTGNRV G K A+RRN VDPLALT GDLVVH+ HGIG+F++MT Sbjct: 466 DALPLVVITETDLTGNRVGDIAGAKRRPARRRNKVDPLALTPGDLVVHETHGIGRFIKMT 525 Query: 536 ERVVGG----ARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSD 591 ER + +RREY+VLEYA SKRG D+LYVPMDSLD LSRYVGGE P+LS++GGSD Sbjct: 526 ERTISTGDETSRREYIVLEYAPSKRGQPGDQLYVPMDSLDMLSRYVGGEKPTLSKMGGSD 585 Query: 592 WANTKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAI 651 W NTK KAR AVREIA ELV LYAKRQ+APGHAFGPDTPWQ EMED F + ET DQ+ AI Sbjct: 586 WKNTKKKARAAVREIAGELVELYAKRQAAPGHAFGPDTPWQKEMEDNFPYVETEDQMLAI 645 Query: 652 QEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 711 VK DMEKPVPMDRVI GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTTLLA QH TF Sbjct: 646 DAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHKSTF 705 Query: 712 TNRMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVD 771 RMAGFPVT+ GLSRFT AES+ + GL G VD+V+GTHRLLQTGV WK+LGL+IVD Sbjct: 706 EERMAGFPVTIHGLSRFTSTAESKETLAGLASGEVDIVVGTHRLLQTGVQWKNLGLVIVD 765 Query: 772 EEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 831 EEQRFGVEHKEHIK++R+HVDVLTMSATPIPRTLEMS+AGIREM+T+LTPPE+R+P+LTY Sbjct: 766 EEQRFGVEHKEHIKALRSHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTY 825 Query: 832 VGPHDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEET 891 VGP++DKQVAA++RRELLRDGQ F+IHN+V I++ A +R LVPEARVVVAHGQM+EE Sbjct: 826 VGPYEDKQVAASIRRELLRDGQVFFIHNKVADIEKKARELRDLVPEARVVVAHGQMSEEL 885 Query: 892 LEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 951 LE+TV+GFW+REYD+LVCTTIVETGLDI+NANTLIVE A GLSQLHQLRGRVGRSRER Sbjct: 886 LEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRER 945 Query: 952 GYAYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAG 1011 GYAYFLYP LTET+YDRLATIAQNN+LGAGMAVAMKDLE+RGAGNVLGAEQSGH+AG Sbjct: 946 GYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAG 1005 Query: 1012 VGFDLYVRLVGEAVEAYRAAADGKTV-ATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 VGFDLYVRLVGEAVEAYRA ADGK+V T + +VR+DLPVDAH+P YI S Sbjct: 1006 VGFDLYVRLVGEAVEAYRALADGKSVDGTVKGPTEVRVDLPVDAHIPENYINSERLRLEI 1065 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYGP+PE G+T++ AV + + Sbjct: 1066 YRKLATSESESDLQLAVEEMEDRYGPIPEEVSRLLAVARLRHQMRAAGLTDV-AVQGTRI 1124 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 ++ P+ L DS Q+RLKR++P YRA +QV P+AG V P +RD++L+QWV+ + Sbjct: 1125 KIHPVELKDSQQVRLKRLFPSATYRAAAKAIQVSFPKAGRNVTDPLLRDVDLLQWVSDFI 1184 Query: 1191 LVLNGKGQGDVDMSKFSNP-AGEAKR 1215 + D+D P AG+ K+ Sbjct: 1185 AKM-----FDIDERDVRGPRAGKGKK 1205 >tr|C5VBF1|C5VBF1_9CORY Tax_Id=553207 (mfd)SubName: Full=Transcription-repair coupling factor; EC=3.6.1.-;[Corynebacterium matruchotii ATCC 14266] Length = 1238 Score = 1282 bits (3317), Expect = 0.0 Identities = 675/1221 (55%), Positives = 844/1221 (69%), Gaps = 39/1221 (3%) Query: 3 APGHTSVQTPIAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNGPL 62 AP + ++GL++ A +DP L+ +I + + PL Sbjct: 7 APTAATTPAMLSGLLKTAATDPKLKGLISHVGDPTLSIATIDQARPWAIGALA--HHTPL 64 Query: 63 LVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXXPD 122 LVV ATGREA++LTAEL+ ++GD VA FP+WETLPHERLSP + G Sbjct: 65 LVVTATGREAEDLTAELKAMWGDQVAWFPAWETLPHERLSPAADVAGTRAKILHNL---- 120 Query: 123 DETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVDMV 182 A LR+VVT R + QP+ +P+TL+VG + +F D+ LV +Y VD+V Sbjct: 121 -----ANLRIVVTAARGVCQPILETNPGRDPLTLTVGHDYDFTDLTHHLVFKAYKHVDLV 175 Query: 183 GKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAVPC 242 +RGEFA RGGI+D+FP T EHP+R EFWGDE++++RAF++ADQR+ P++ V P Sbjct: 176 ARRGEFATRGGIIDIFPTTGEHPIRAEFWGDELTDLRAFSVADQRAFPDLDYPAVDVYPA 235 Query: 243 RELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIEPT 302 RELL+TDDV RAA LA H EN T+ ++L K+A+ IP DGMEAL+P+L + T Sbjct: 236 RELLITDDVAGRAAELAVAH--RENP---TLQELLTKVADRIPADGMEALIPVLADLTAT 290 Query: 303 ---TLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEAL-- 357 TL +P G V+ PEK+RTR ADL T EFL A W AA+G P+D L Sbjct: 291 PMRTLPELMPAGTHVVAVHPEKIRTRIADLQATDAEFLAAGWEAAAMGAAGPVDSRDLDL 350 Query: 358 GASGFVTFXXXXXXXXXGGHPWWTLSQ--LSDESAVELDIRSAPSARGSQHNLEEIFAML 415 AS + ++ G WW+++ + E A+ L+ P+ RG + E+ ++L Sbjct: 351 SASSYRSYDSLVVGATKAGQSWWSVTPPGMGGEDALPLEFEPGPTPRGDLSQIGEMMSLL 410 Query: 416 RAHVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVV 475 AH GG AA + P G R+V++ E AA + +PG P+ G V + + +G+V Sbjct: 411 LAHTMAGGRAAFIAPAPGAIKRMVDRFREQGIAAAVAQPGAEPQPGEVTLYQALSHAGLV 470 Query: 476 ------LPGAN---LVIITETDLTGNRVTANEGRKLA-AKRRNVVDPLALTAGDLVVHDQ 525 LPGA LV++TETD+TGNRV G K A+RR+ VDPLAL +GD VVH+ Sbjct: 471 FPKVRKLPGAEALPLVVVTETDVTGNRVGDIAGAKRRQARRRHRVDPLALKSGDYVVHET 530 Query: 526 HGIGKFVEMTERVVG----GARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEA 581 HGIG+FV MTER + +RREY+VLEYA ++RG D+LYVPMDSLD LSRYVGGE Sbjct: 531 HGIGRFVRMTERTITMGEETSRREYIVLEYAPTRRGQPADQLYVPMDSLDLLSRYVGGEK 590 Query: 582 PSLSRLGGSDWANTKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGF 641 P+LS++GGSDW NTK KAR AVREIASELV LYAKR +APGHAF PD+PWQ E+ED F F Sbjct: 591 PTLSKMGGSDWKNTKKKARAAVREIASELVELYAKRATAPGHAFAPDSPWQQELEDNFPF 650 Query: 642 TETIDQLTAIQEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTT 701 ET DQ+ AI VK DME+PVPMDRVI GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTT Sbjct: 651 VETEDQMAAIAAVKQDMEQPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTT 710 Query: 702 LLADQHLQTFTNRMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVT 761 LLA QHL TF RMAGFPVT+KGLSRFT ++++ ++ GL+DGSVD+VIGTHRLLQTGV Sbjct: 711 LLAQQHLATFAERMAGFPVTIKGLSRFTSASDAKEILSGLRDGSVDIVIGTHRLLQTGVQ 770 Query: 762 WKDLGLIIVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTP 821 WK LGL++VDEEQRFGVEHKEHIK+MR+HVDVLTMSATPIPRTLEMS+AGIREMSTILTP Sbjct: 771 WKQLGLVVVDEEQRFGVEHKEHIKAMRSHVDVLTMSATPIPRTLEMSMAGIREMSTILTP 830 Query: 822 PEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVV 881 PE+R+P+LTYVG ++KQ+AAA+RRELLRDGQ F++HN+V I++ A +R LVPEAR+V Sbjct: 831 PEDRHPILTYVGAQEEKQIAAAIRRELLRDGQVFFVHNKVSDIEKKARELRNLVPEARIV 890 Query: 882 VAHGQMNEETLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQL 941 VAHGQM+EE LE+TV+GFW+REYD+LVCTTIVETGLDI+NANTLIVE A GLSQLHQL Sbjct: 891 VAHGQMSEEVLERTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQL 950 Query: 942 RGRVGRSRERGYAYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVL 1001 RGRVGRSR RGYAYFLYP LTET+YDRLATIAQNN+LGAGMAVAMKDLE+RGAGNVL Sbjct: 951 RGRVGRSRSRGYAYFLYPKGTTLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVL 1010 Query: 1002 GAEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKTV-ATPQEQKDVRIDLPVDAHLPPEY 1060 GA+QSGH+AGVGFDLYVRLVGEAV YRA ADGK V T Q K++RIDLPVDAH+P Y Sbjct: 1011 GAQQSGHIAGVGFDLYVRLVGEAVATYRALADGKPVDGTDQSPKEIRIDLPVDAHIPESY 1070 Query: 1061 IGSXXXXXXXXXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGIT 1120 I + DRYGP+P+ A + GIT Sbjct: 1071 INAERLRLEVYQKLAASTSETDIRLIVEEMEDRYGPIPQEASRLLAVARLRHLARQAGIT 1130 Query: 1121 EIGAVSASTVRLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDL 1180 +IG V + +++ P+ L DS Q+RLKR++PG YRA +QV +P+AG V P++RD+ Sbjct: 1131 DIG-VQGNRIKIHPVELLDSQQVRLKRLFPGATYRAVAKAIQVSIPKAGTTVTDPKLRDV 1189 Query: 1181 ELVQWVAGLVLVLNGKGQGDV 1201 +L+QWVA + + + DV Sbjct: 1190 DLIQWVADFLSAMFNLDKVDV 1210 >tr|A4QCT9|A4QCT9_CORGB Tax_Id=340322 SubName: Full=Putative uncharacterized protein;[Corynebacterium glutamicum] Length = 1214 Score = 1281 bits (3315), Expect = 0.0 Identities = 678/1200 (56%), Positives = 826/1200 (68%), Gaps = 39/1200 (3%) Query: 13 IAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNGPLLVVAATGREA 72 +AGL+++A +DP L+ ++ G + P+LVV ATGREA Sbjct: 2 LAGLLKVAATDPKLKGLMSNVGQQHLHI--TGIDQARPWAIGALAHHAPVLVVTATGREA 59 Query: 73 DELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXXPDDETLGAPLRV 132 ++LTAEL+ + GD VA PSWETLPHERLSPGV+ VG L+V Sbjct: 60 EDLTAELKAMMGDKVAWLPSWETLPHERLSPGVDIVGKRAQVLNHL---------GDLKV 110 Query: 133 VVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVDMVGKRGEFAVRG 192 VV R+ QP+ D P+TL GAE +F + LV +Y VDMV KRGEFA RG Sbjct: 111 VVAAARAFCQPVLKDAEGRAPLTLKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRG 170 Query: 193 GILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAVPCRELLMTDDVR 252 GILD+FP T ++PVRVEFWGDE+S++R F++ADQR+IPE+ ++++ P RELL+T++V Sbjct: 171 GILDIFPTTLDYPVRVEFWGDEVSDIRQFSVADQRTIPEITIKSIEIFPARELLITEEVA 230 Query: 253 ERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIEPTTLTRHLPEGA 312 RA +L ++HP T+ +ML+++A+ VDGMEAL+P L + +PE Sbjct: 231 SRAESLISKHPGNP-----TLVEMLSRIADSQDVDGMEALIPALTDTPMVPMLELMPENT 285 Query: 313 PVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALG--ASGFVTFXXXXX 370 VLV PEKVR R ADL T EFL A W AA+G D P+ E L AS + ++ Sbjct: 286 HVLVIAPEKVRRRIADLEATDAEFLMAGWEAAAMGADGPVAAEGLDLEASSYRSYESLEV 345 Query: 371 XXXXGGHPWWTLS-----QLSDESAVELDIRSAPSARGSQHNLEEIFAMLRAHVATGGYA 425 WWT + + S+E+ + LD + P+ RG ++ + A L AH GG A Sbjct: 346 SASKSDVRWWTFAPPGMFEASEEATLPLDFEAGPAPRGELPKIDAMMAQLLAHTTGGGRA 405 Query: 426 AVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPGAN----- 480 A + P G R+V++ E + PG P G V + +G+V P Sbjct: 406 AFIAPTQGAIKRMVDRFAEKGIPTHVATPGWEPTPGQVTLYHALSHAGLVFPKVRKHRDG 465 Query: 481 ----LVIITETDLTGNRVTANEGRKLA-AKRRNVVDPLALTAGDLVVHDQHGIGKFVEMT 535 LV+ITETDLTGNRV G K AKRRN VDPLAL GDLVVH+ HGIG+FV+MT Sbjct: 466 AAMPLVVITETDLTGNRVGDIAGAKRRPAKRRNKVDPLALEPGDLVVHETHGIGRFVKMT 525 Query: 536 ERVVGG----ARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSD 591 ER + +RREY+VLEYA SKRG D+LYVPMD+LD LSRYVGGE P+LS++GGSD Sbjct: 526 ERTISAGDETSRREYIVLEYAPSKRGQPGDQLYVPMDALDMLSRYVGGEKPTLSKMGGSD 585 Query: 592 WANTKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAI 651 W N K KAR AVREIA ELV LYAKRQSAPGH F PDTPWQ EMED F + ET DQ+ AI Sbjct: 586 WKNAKKKARAAVREIAGELVELYAKRQSAPGHPFAPDTPWQKEMEDNFPYVETEDQMLAI 645 Query: 652 QEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 711 VK DMEK VPMDRVI GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTTLLA QH TF Sbjct: 646 DAVKEDMEKSVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTF 705 Query: 712 TNRMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVD 771 RM GFPVT+KGLSRFT PAESR ++ GL GSVD+VIGTHRLLQTGV WK+LGL+IVD Sbjct: 706 EERMTGFPVTIKGLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLVIVD 765 Query: 772 EEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 831 EEQRFGVEHKEHIK++RTHVDVLTMSATPIPRTLEMS+AGIREM+T+LTPPE+R+P+LTY Sbjct: 766 EEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTY 825 Query: 832 VGPHDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEET 891 VGP++DKQVAA++RRELLRDGQ F+IHN+V I++ A +R LVPEARVVVAHGQM+EE Sbjct: 826 VGPYEDKQVAASIRRELLRDGQVFFIHNKVADIEKKAREIRDLVPEARVVVAHGQMSEEL 885 Query: 892 LEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 951 LE+TV+GFW+REYD+LVCTTIVETGLDISNANTLIVE A GLSQLHQLRGRVGRSRER Sbjct: 886 LEQTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRER 945 Query: 952 GYAYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAG 1011 GYAYFLYP LTE +YDRLATIAQNN+LGAGMAVAMKDLE+RGAGNVLGAEQSGH+AG Sbjct: 946 GYAYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAG 1005 Query: 1012 VGFDLYVRLVGEAVEAYRAAADGKTV-ATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 VGFDLYVRLVGEAVEAYRA ADGK V T + K++R+DLPVDAH+P +YI + Sbjct: 1006 VGFDLYVRLVGEAVEAYRALADGKVVDGTVKGPKEIRVDLPVDAHIPEKYINAERLRLEI 1065 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYGP+PE + E +T+I AV + + Sbjct: 1066 YRKLAQSESEVDLRLAVEEMEDRYGPIPEEVERLLAVSRLRHLMREAHLTDI-AVQGTRI 1124 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 ++ P+ L DS Q+RLKR++PG YRA +Q+ P+AG V P +RD++L+QWVA + Sbjct: 1125 KVHPVDLADSQQVRLKRLFPGATYRAAAKAIQLSFPKAGNKVTDPLLRDVDLLQWVANFI 1184 >tr|Q6M6I8|Q6M6I8_CORGL Tax_Id=1718 (mfd)SubName: Full=PUTATIVE TRANSCRIPTION-REPAIR COUPLING FACTOR;[Corynebacterium glutamicum] Length = 1217 Score = 1280 bits (3311), Expect = 0.0 Identities = 677/1200 (56%), Positives = 825/1200 (68%), Gaps = 39/1200 (3%) Query: 13 IAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNGPLLVVAATGREA 72 +AGL+++A +DP L+ ++ G + P+LVV ATGREA Sbjct: 5 LAGLLKVAATDPKLKGLMSNVGQQHLHI--TGIDQARPWAIGALAHHAPVLVVTATGREA 62 Query: 73 DELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXXPDDETLGAPLRV 132 ++LTAEL+ + GD VA PSWETLPHERLSPGV+ VG L+V Sbjct: 63 EDLTAELKAMMGDKVAWLPSWETLPHERLSPGVDIVGKRAQVLNHL---------GDLKV 113 Query: 133 VVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVDMVGKRGEFAVRG 192 VV R+ QP+ D P+TL GAE +F + LV +Y VDMV KRGEFA RG Sbjct: 114 VVAAARAFCQPVLKDAEGRAPLTLKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRG 173 Query: 193 GILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAVPCRELLMTDDVR 252 GILD+FP T ++PVRVEFWGDE+S++R F++ADQR+IPE+ ++++ P RELL+T++V Sbjct: 174 GILDIFPTTLDYPVRVEFWGDEVSDIRQFSVADQRTIPEITIKSIEIFPARELLITEEVA 233 Query: 253 ERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIEPTTLTRHLPEGA 312 RA +L ++HP T+ +ML+++A+ VDGMEAL+P L + +PE Sbjct: 234 SRAESLISKHPGNP-----TLVEMLSRIADSQDVDGMEALIPALTDTPMVPMLELMPENT 288 Query: 313 PVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALG--ASGFVTFXXXXX 370 VLV PEKVR R ADL T EFL A W AA+G D P+ E L AS + ++ Sbjct: 289 HVLVIAPEKVRRRIADLEATDAEFLMAGWEAAAMGADGPVAAEGLDLEASSYRSYESLEV 348 Query: 371 XXXXGGHPWWTLS-----QLSDESAVELDIRSAPSARGSQHNLEEIFAMLRAHVATGGYA 425 WWT + + S+E+ + LD + P+ RG ++ + A L AH GG A Sbjct: 349 SASKSDVRWWTFAPPGMFEASEEATLPLDFEAGPAPRGELPKIDAMMAQLLAHTTGGGRA 408 Query: 426 AVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPGAN----- 480 A + P G R+V++ E + PG P G V + +G+V P Sbjct: 409 AFIAPTQGAIKRMVDRFAEKGIPTHVATPGWEPTPGQVTLYHALSHAGLVFPKVRKHRDG 468 Query: 481 ----LVIITETDLTGNRVTANEGRKLA-AKRRNVVDPLALTAGDLVVHDQHGIGKFVEMT 535 LV+ITETDLTGNRV G K AKRRN VDPLAL GDLVVH+ HGIG+FV+MT Sbjct: 469 AAMPLVVITETDLTGNRVGDIAGAKRRPAKRRNKVDPLALEPGDLVVHETHGIGRFVKMT 528 Query: 536 ERVVGG----ARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSD 591 ER + +RREY+VLEYA SKRG D+LYVPMD+LD LSRYVGGE P+LS++GGSD Sbjct: 529 ERTISAGDETSRREYIVLEYAPSKRGQPGDQLYVPMDALDMLSRYVGGEKPTLSKMGGSD 588 Query: 592 WANTKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAI 651 W N K KAR AVREIA ELV LYAKRQSAPGH F PDTPWQ EMED F + ET DQ+ AI Sbjct: 589 WKNAKKKARAAVREIAGELVELYAKRQSAPGHPFAPDTPWQKEMEDNFPYVETEDQMLAI 648 Query: 652 QEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 711 VK DMEK VPMDRVI GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTTLLA QH TF Sbjct: 649 DAVKEDMEKSVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTF 708 Query: 712 TNRMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVD 771 RM GFPVT+KGLSRFT PAESR ++ GL GSVD+VIGTHRLLQTGV WK+LGL+IVD Sbjct: 709 EERMTGFPVTIKGLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLVIVD 768 Query: 772 EEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 831 EEQRFGVEHKEHIK++RTHVDVLTMSATPIPRTLEMS+AGIREM+T+LTPPE+R+P+LTY Sbjct: 769 EEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTY 828 Query: 832 VGPHDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEET 891 VGP++DKQVAA++RRELLRDGQ F+IHN+V I++ A +R LVPEARVVVAHGQM+EE Sbjct: 829 VGPYEDKQVAASIRRELLRDGQVFFIHNKVADIEKKAREIRDLVPEARVVVAHGQMSEEL 888 Query: 892 LEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 951 LE+TV+GFW+REYD+LVCTTIVETGLDISNANTLIVE A GLSQLHQLRGRVGRSRER Sbjct: 889 LEQTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRER 948 Query: 952 GYAYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAG 1011 GYAYFLYP LTE +YDRLATIAQNN+LGAGMAVAMKDLE+RGAGNVLGAEQSGH+AG Sbjct: 949 GYAYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAG 1008 Query: 1012 VGFDLYVRLVGEAVEAYRAAADGKTV-ATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXXX 1070 VGFDLYVRLVGEAVEAYRA ADGK V T + K++R+DLPVDAH+P +YI + Sbjct: 1009 VGFDLYVRLVGEAVEAYRALADGKVVDGTVKGPKEIRVDLPVDAHIPEKYINAERLRLEI 1068 Query: 1071 XXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSASTV 1130 DRYGP+PE + E +T+I AV + + Sbjct: 1069 YRKLAQSESEVDLRLAVEEMEDRYGPIPEEVERLLAVSRLRHLMREAHLTDI-AVQGTRI 1127 Query: 1131 RLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLV 1190 ++ P+ L DS Q+RLKR++PG YRA +Q+ P+ G V P +RD++L+QWVA + Sbjct: 1128 KVHPVDLADSQQVRLKRLFPGATYRAAAKAIQLSFPKTGNKVTDPLLRDVDLLQWVANFI 1187 >tr|C0E7P9|C0E7P9_9CORY Tax_Id=566549 SubName: Full=Putative uncharacterized protein;[Corynebacterium matruchotii ATCC 33806] Length = 1223 Score = 1278 bits (3307), Expect = 0.0 Identities = 673/1212 (55%), Positives = 843/1212 (69%), Gaps = 41/1212 (3%) Query: 13 IAGLVELALSDPSLQDVIXXXXXXXXXXXXVGPXXXXXXXXXXXXQNGPLLVVAATGREA 72 ++GL++ A +DP L+ +I + + PLLVV ATGREA Sbjct: 2 LSGLLKTAATDPKLKGLISHVGDPTLSIATIDQAQPWAIGALA--HHTPLLVVTATGREA 59 Query: 73 DELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXXXXPDDETLGAPLRV 132 ++LTAEL+ ++GD VA FP+WETLPHERLSP + G A LR+ Sbjct: 60 EDLTAELKAMWGDQVAWFPAWETLPHERLSPAADVAGTRAKILHNL---------ANLRI 110 Query: 133 VVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVDMVGKRGEFAVRG 192 VVT R + QP+ +P+TL+VG + +F D+ LV +Y VD+V +RGEFA RG Sbjct: 111 VVTAARGVCQPILETTPGRDPLTLTVGHDYDFTDLTHHLVFKAYKHVDLVARRGEFATRG 170 Query: 193 GILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAVPCRELLMTDDVR 252 GI+D+FP T EHP+R EFWGDE++++RAF++ADQR+ P++ TV P RELL+TD+V Sbjct: 171 GIIDIFPTTGEHPIRAEFWGDELTDLRAFSVADQRAFPDLDYPTVDVYPARELLITDNVA 230 Query: 253 ERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIEPTTLTRHLPE-- 310 RAA LA H EN T+ ++L K+A+ IP DGMEAL+P+L + T + R LPE Sbjct: 231 GRAAELAVAH--RENP---TLQELLTKIADRIPADGMEALIPVLADLTATPM-RTLPELM 284 Query: 311 --GAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEAL--GASGFVTFX 366 G V+ PEK+RTR ADL T EFL A W AA+G P+D L AS + ++ Sbjct: 285 LAGTHVVAVHPEKIRTRIADLQATDAEFLAAGWEAAAMGAAGPVDSRDLDLSASSYRSYD 344 Query: 367 XXXXXXXXGGHPWWTLSQ--LSDESAVELDIRSAPSARGSQHNLEEIFAMLRAHVATGGY 424 G WW+++ + E A+ L+ P+ RG + E+ ++L AH GG Sbjct: 345 SLVLGATKAGQSWWSITPPGMGGEDALPLEFEPGPTPRGDLSQIGEMMSLLLAHTMAGGR 404 Query: 425 AAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVV------LPG 478 AA + P G R+ ++ E AAT+ +PG P+ G V + + +G+V LPG Sbjct: 405 AAFIAPAPGAIKRMADRFREQGIAATVAQPGAEPQPGEVTLYQALSHAGLVFPKVRKLPG 464 Query: 479 AN---LVIITETDLTGNRVTANEGRKLA-AKRRNVVDPLALTAGDLVVHDQHGIGKFVEM 534 A LV++TETD+TGNRV G K A+RR+ VDPLAL +GD VVH+ HGIG+FV M Sbjct: 465 AEALPLVVVTETDVTGNRVGDIAGAKRRQARRRHRVDPLALKSGDYVVHETHGIGRFVRM 524 Query: 535 TERVVG----GARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGS 590 TER + +RREY+VLEYA ++RG D+LYVPMDSLD LSRYVGGE P+LS++GGS Sbjct: 525 TERTITMGEETSRREYIVLEYAPTRRGQPADQLYVPMDSLDLLSRYVGGEKPTLSKMGGS 584 Query: 591 DWANTKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTA 650 DW NTK KAR AVREIASELV LYAKR +APGHAF PD+PWQ E+ED F F ET DQ+ A Sbjct: 585 DWKNTKKKARAAVREIASELVELYAKRATAPGHAFAPDSPWQQELEDNFPFVETEDQMAA 644 Query: 651 IQEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQT 710 I VK DME+PVPMDRVI GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTTLLA QHL T Sbjct: 645 IAAVKQDMEQPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHLAT 704 Query: 711 FTNRMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIV 770 F RMAGFPVT++GLSRFT ++++ ++ GL+DGSVD+VIGTHRLLQTGV WK LGL++V Sbjct: 705 FAERMAGFPVTIRGLSRFTSASDAKEILSGLRDGSVDIVIGTHRLLQTGVQWKQLGLVVV 764 Query: 771 DEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 830 DEEQRFGVEHKEHIK+MR+HVDVLTMSATPIPRTLEMS+AGIREMSTILTPPE+R+P+LT Sbjct: 765 DEEQRFGVEHKEHIKAMRSHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILT 824 Query: 831 YVGPHDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEE 890 YVG ++KQ+AAA+RRELLRDGQ F++HN+V I++ A +R LVPEAR+VVAHGQM+EE Sbjct: 825 YVGAQEEKQIAAAIRRELLRDGQVFFVHNKVSDIEKKARELRNLVPEARIVVAHGQMSEE 884 Query: 891 TLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRE 950 LE+TV+GFW+REYD+LVCTTIVETGLDI+NANTLIVE A GLSQLHQLRGRVGRSR Sbjct: 885 VLERTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRS 944 Query: 951 RGYAYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVA 1010 RGYAYFLYP LTET+YDRLATIAQNN+LGAGMAVAMKDLE+RGAGNVLGA+QSGH+A Sbjct: 945 RGYAYFLYPKGTTLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIA 1004 Query: 1011 GVGFDLYVRLVGEAVEAYRAAADGKTV-ATPQEQKDVRIDLPVDAHLPPEYIGSXXXXXX 1069 GVGFDLYVRLVGEAV YRA ADGK V T Q K++RIDLPVDAH+P YI + Sbjct: 1005 GVGFDLYVRLVGEAVATYRALADGKPVDGTDQSPKEIRIDLPVDAHIPESYINAERLRLE 1064 Query: 1070 XXXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXEFGITEIGAVSAST 1129 DRYGP+P+ A + GIT+IG V + Sbjct: 1065 VYRKLAASTSETDIRLIVEEMEDRYGPIPQEASRLLAVARLRHLARQAGITDIG-VHGNR 1123 Query: 1130 VRLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGL 1189 +++ P+ L DS Q+RLKR++PG YRA +QV +P+AG V P++RD++L+QWVA Sbjct: 1124 IKIHPVELLDSQQVRLKRLFPGATYRAVAKAIQVSIPKAGTTVTDPKLRDVDLIQWVADF 1183 Query: 1190 VLVLNGKGQGDV 1201 + + + DV Sbjct: 1184 LSAMFNLDKVDV 1195 >tr|Q8NRS9|Q8NRS9_CORGL Tax_Id=1718 SubName: Full=Transcription-repair coupling factor-superfamily II helicase;[Corynebacterium glutamicum] Length = 1209 Score = 1276 bits (3301), Expect = 0.0 Identities = 669/1154 (57%), Positives = 809/1154 (70%), Gaps = 37/1154 (3%) Query: 59 NGPLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGXXXXXXXXX 118 + P+LVV ATGREA++LTAEL+ + GD VA PSWETLPHERLSPGV+ VG Sbjct: 41 HAPVLVVTATGREAEDLTAELKAMMGDKVAWLPSWETLPHERLSPGVDIVGKRAQVLNHL 100 Query: 119 XXPDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTR 178 L+VVV R+ QP+ D P+TL GAE +F + LV +Y Sbjct: 101 ---------GDLKVVVAAARAFCQPVLKDAEGRAPLTLKEGAEFDFSALTTELVFRAYKH 151 Query: 179 VDMVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVV 238 VDMV KRGEFA RGGILD+FP T ++PVRVEFWGDE+S++R F++ADQR+IPE+ ++++ Sbjct: 152 VDMVAKRGEFATRGGILDIFPTTLDYPVRVEFWGDEVSDIRQFSVADQRTIPEITIKSIE 211 Query: 239 AVPCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHP 298 P RELL+T++V RA +L ++HP T+ +ML+++A+ VDGMEAL+P L Sbjct: 212 IFPARELLITEEVASRAESLISKHPGNP-----TLVEMLSRIADSQDVDGMEALIPALTD 266 Query: 299 IEPTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALG 358 + +PE VLV PEKVR R ADL T EFL A W AA+G D P+ E L Sbjct: 267 TPMVPMLELMPENTHVLVIAPEKVRRRIADLEATDAEFLMAGWEAAAMGADGPVAAEGLD 326 Query: 359 --ASGFVTFXXXXXXXXXGGHPWWTLS-----QLSDESAVELDIRSAPSARGSQHNLEEI 411 AS + ++ WWT + + S+E+ + LD + P+ RG ++ + Sbjct: 327 LEASSYRSYESLEVSASKSDVRWWTFAPPGMFEASEEATLPLDFEAGPAPRGELPKIDAM 386 Query: 412 FAMLRAHVATGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLC 471 A L AH GG AA + P G R+V++ E + PG P G V + Sbjct: 387 MAQLLAHTTGGGRAAFIAPTQGAIKRMVDRFAEKGIPTHVATPGWEPTPGQVTLYHALSH 446 Query: 472 SGVVLPGAN---------LVIITETDLTGNRVTANEGRKLA-AKRRNVVDPLALTAGDLV 521 +G+V P LV+ITETDLTGNRV G K AKRRN VDPLAL GDLV Sbjct: 447 AGLVFPKVRKHRDGAAMPLVVITETDLTGNRVGDIAGAKRRPAKRRNKVDPLALEPGDLV 506 Query: 522 VHDQHGIGKFVEMTERVVGG----ARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYV 577 VH+ HGIG+FV+MTER + +RREY+VLEYA SKRG D+LYVPMD+LD LSRYV Sbjct: 507 VHETHGIGRFVKMTERTISAGDETSRREYIVLEYAPSKRGQPGDQLYVPMDALDMLSRYV 566 Query: 578 GGEAPSLSRLGGSDWANTKTKARRAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMED 637 GGE P+LS++GGSDW N K KAR AVREIA ELV LYAKRQSAPGH F PDTPWQ EMED Sbjct: 567 GGEKPTLSKMGGSDWKNAKKKARAAVREIAGELVELYAKRQSAPGHPFAPDTPWQKEMED 626 Query: 638 AFGFTETIDQLTAIQEVKSDMEKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVL 697 F + ET DQ+ AI VK DMEK VPMDRVI GDVGYGKTE+AVRAAFKAVQDGKQVAVL Sbjct: 627 NFPYVETEDQMLAIDAVKEDMEKSVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVL 686 Query: 698 VPTTLLADQHLQTFTNRMAGFPVTVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQ 757 VPTTLLA QH TF RM GFPVT+KGLSRFT PAESR ++ GL GSVD+VIGTHRLLQ Sbjct: 687 VPTTLLAQQHQSTFEERMTGFPVTIKGLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQ 746 Query: 758 TGVTWKDLGLIIVDEEQRFGVEHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMST 817 TGV WK+LGL+IVDEEQRFGVEHKEHIK++RTHVDVLTMSATPIPRTLEMS+AGIREM+T Sbjct: 747 TGVQWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMTT 806 Query: 818 ILTPPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPE 877 +LTPPE+R+P+LTYVGP++DKQVAA++RRELLRDGQ F+IHN+V I++ A +R LVPE Sbjct: 807 MLTPPEDRHPILTYVGPYEDKQVAASIRRELLRDGQVFFIHNKVADIEKKAREIRDLVPE 866 Query: 878 ARVVVAHGQMNEETLEKTVEGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQ 937 ARVVVAHGQM+EE LE+TV+GFW+REYD+LVCTTIVETGLDISNANTLIVE A GLSQ Sbjct: 867 ARVVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQ 926 Query: 938 LHQLRGRVGRSRERGYAYFLYPPNKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGA 997 LHQLRGRVGRSRERGYAYFLYP LTE +YDRLATIAQNN+LGAGMAVAMKDLE+RGA Sbjct: 927 LHQLRGRVGRSRERGYAYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGA 986 Query: 998 GNVLGAEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKTV-ATPQEQKDVRIDLPVDAHL 1056 GNVLGAEQSGH+AGVGFDLYVRLVGEAVEAYRA ADGK V T + K++R+DLPVDAH+ Sbjct: 987 GNVLGAEQSGHIAGVGFDLYVRLVGEAVEAYRALADGKVVDGTVKGPKEIRVDLPVDAHI 1046 Query: 1057 PPEYIGSXXXXXXXXXXXXXXXXXXXXXXXXXXXIDRYGPLPEPAQXXXXXXXXXXXXXE 1116 P +YI + DRYGP+PE + E Sbjct: 1047 PEKYINAERLRLEIYRKLAQSESEVDLRLAVEEMEDRYGPIPEEVERLLAVSRLRHLMRE 1106 Query: 1117 FGITEIGAVSASTVRLSPMVLPDSAQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPR 1176 +T+I AV + +++ P+ L DS Q+RLKR++PG YRA +Q+ P+ G V P Sbjct: 1107 AHLTDI-AVQGTRIKVHPVDLADSQQVRLKRLFPGATYRAAAKAIQLSFPKTGNKVTDPL 1165 Query: 1177 IRDLELVQWVAGLV 1190 +RD++L+QWVA + Sbjct: 1166 LRDVDLLQWVANFI 1179 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.317 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 9,470,102,886 Number of extensions: 393757108 Number of successful extensions: 1073061 Number of sequences better than 10.0: 11436 Number of HSP's gapped: 1061742 Number of HSP's successfully gapped: 13447 Length of query: 1215 Length of database: 4,236,830,644 Length adjustment: 150 Effective length of query: 1065 Effective length of database: 2,360,651,044 Effective search space: 2514093361860 Effective search space used: 2514093361860 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 87 (38.1 bits)