BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSMEG_6254
         (156 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           12,507,864 sequences; 4,236,830,644 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|A0R5N5|A0R5N5_MYCS2 Tax_Id=246196 SubName: Full=Putative unch...   100   6e-20

>tr|A0R5N5|A0R5N5_MYCS2 Tax_Id=246196 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium smegmatis]
          Length = 156

 Score =  100 bits (249), Expect = 6e-20
 Identities = 64/156 (41%), Positives = 64/156 (41%)

Query: 1   MSETPSDHPTTPVGTPAETPTATSGXXXXXXXXXXXXXXXXXXXXXXRRHSRXXXXXXXX 60
           MSETPSDHPTTPVGTPAETPTATSG                      RRHSR        
Sbjct: 1   MSETPSDHPTTPVGTPAETPTATSGPVAPPPVAPPPAAVPVAPAEAPRRHSRVVQAAAWV 60

Query: 61  XXXXXXXXXXXXXXXXXXXLGKNSXXXXXXXXXXXXEIXXXXXXXXXXXXXXXXXXXXXX 120
                              LGKNS            EI                      
Sbjct: 61  GIVAGVVFIVAVVFGTGFVLGKNSGPGHHHRGHDRPEIMMFHRGGPPPMMPGMGPGHMRP 120

Query: 121 XXXXXXXXXAPAERGEFRGPQAPDRSETPTTAPARP 156
                    APAERGEFRGPQAPDRSETPTTAPARP
Sbjct: 121 GGGMFGPGGAPAERGEFRGPQAPDRSETPTTAPARP 156


  Database: Amellifera_nr
    Posted date:  Jul 23, 2010  5:10 AM
  Number of letters in database: 4,236,830,644
  Number of sequences in database:  12,507,864
  
Lambda     K      H
   0.304    0.123    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 12507864
Number of Hits to DB: 625,181,978
Number of extensions: 11931329
Number of successful extensions: 30500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30609
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 4,236,830,644
Length adjustment: 118
Effective length of query: 38
Effective length of database: 2,760,902,692
Effective search space: 104914302296
Effective search space used: 104914302296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 75 (33.5 bits)