BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSMEG_6920
         (122 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           12,507,864 sequences; 4,236,830,644 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|A0R7H7|A0R7H7_MYCS2 Tax_Id=246196 SubName: Full=Putative unch...    71   5e-11

>tr|A0R7H7|A0R7H7_MYCS2 Tax_Id=246196 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium smegmatis]
          Length = 122

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 40/99 (40%), Positives = 40/99 (40%)

Query: 24  TRPHYGDPVRGVLRAVXXXXXXXXXXXXXXXXXXXXXXXXTGLMXXXXXXXXXXXXXXXG 83
           TRPHYGDPVRGVLRAV                        TGLM               G
Sbjct: 24  TRPHYGDPVRGVLRAVAPTQLAAAVMLAAGGVTALAAAPQTGLMVVVVCVIGAVATVAAG 83

Query: 84  CWXXXXXXXXXXXXXXXXXXXXGGCAPEACAACTLSCSK 122
           CW                    GGCAPEACAACTLSCSK
Sbjct: 84  CWQSAKAVAVSQAASEAARAESGGCAPEACAACTLSCSK 122


  Database: Amellifera_nr
    Posted date:  Jul 23, 2010  5:10 AM
  Number of letters in database: 4,236,830,644
  Number of sequences in database:  12,507,864
  
Lambda     K      H
   0.326    0.139    0.511 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 12507864
Number of Hits to DB: 330,026,376
Number of extensions: 3065743
Number of successful extensions: 5696
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5695
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 4,236,830,644
Length adjustment: 88
Effective length of query: 34
Effective length of database: 3,136,138,612
Effective search space: 106628712808
Effective search space used: 106628712808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 75 (33.5 bits)