BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MSMEG_6931 (208 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 12,507,864 sequences; 4,236,830,644 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|A0R7I6|A0R7I6_MYCS2 Tax_Id=246196 SubName: Full=RNA polymeras... 386 e-106 tr|A3Q8R3|A3Q8R3_MYCSJ Tax_Id=164757 SubName: Full=Transcription... 219 1e-55 tr|Q1B0T3|Q1B0T3_MYCSS Tax_Id=164756 SubName: Full=RNA polymeras... 219 2e-55 tr|A1UPB7|A1UPB7_MYCSK Tax_Id=189918 SubName: Full=Transcription... 219 2e-55 tr|C6DPE1|C6DPE1_MYCTK Tax_Id=478434 SubName: Full=RNA polymeras... 214 4e-54 tr|C1AJ51|C1AJ51_MYCBT Tax_Id=561275 (sigMa)SubName: Full=RNA po... 214 4e-54 tr|A5WUD2|A5WUD2_MYCTF Tax_Id=336982 SubName: Full=Alternative R... 214 4e-54 tr|A5U9N9|A5U9N9_MYCTA Tax_Id=419947 (sigM)SubName: Full=RNA pol... 214 4e-54 tr|A1KEF5|A1KEF5_MYCBP Tax_Id=410289 (sigMa_2)SubName: Full=Poss... 214 4e-54 tr|D6G6H5|D6G6H5_MYCTU Tax_Id=478435 SubName: Full=Alternative R... 214 4e-54 tr|D6FV97|D6FV97_MYCTU Tax_Id=611304 SubName: Full=Alternative R... 214 4e-54 tr|D6FC39|D6FC39_MYCTU Tax_Id=611303 SubName: Full=Alternative R... 214 4e-54 tr|D6EZS2|D6EZS2_MYCTU Tax_Id=611302 SubName: Full=Alternative R... 214 4e-54 tr|D5ZB19|D5ZB19_MYCTU Tax_Id=537210 SubName: Full=Alternative R... 214 4e-54 tr|D5YYI9|D5YYI9_MYCTU Tax_Id=515616 SubName: Full=RNA polymeras... 214 4e-54 tr|D5YM17|D5YM17_MYCTU Tax_Id=520140 SubName: Full=Alternative R... 214 4e-54 tr|D5YAH6|D5YAH6_MYCTU Tax_Id=520141 SubName: Full=Alternative R... 214 4e-54 tr|D5XP85|D5XP85_MYCTU Tax_Id=515617 SubName: Full=Alternative R... 214 4e-54 tr|Q7TVD0|Q7TVD0_MYCBO Tax_Id=1765 (sigMa)SubName: Full=POSSIBLE... 213 9e-54 tr|Q8VIQ8|Q8VIQ8_MYCTU Tax_Id=1773 (sigM)SubName: Full=RNA polym... 213 1e-53 tr|A4KN19|A4KN19_MYCTU Tax_Id=395095 SubName: Full=Alternative R... 213 1e-53 tr|A2VMT2|A2VMT2_MYCTU Tax_Id=348776 SubName: Full=Alternative R... 213 1e-53 tr|A1TI17|A1TI17_MYCVP Tax_Id=350058 SubName: Full=Transcription... 212 2e-53 tr|A4T4S7|A4T4S7_MYCGI Tax_Id=350054 SubName: Full=Transcription... 206 1e-51 tr|Q73RU1|Q73RU1_MYCPA Tax_Id=1770 (sigM)SubName: Full=SigM;[Myc... 202 3e-50 tr|A0QNC1|A0QNC1_MYCA1 Tax_Id=243243 SubName: Full=RNA polymeras... 202 3e-50 tr|D5PA10|D5PA10_9MYCO Tax_Id=525368 (sigM)SubName: Full=RNA pol... 197 8e-49 tr|B2HNS6|B2HNS6_MYCMM Tax_Id=216594 (sigM)SubName: Full=Alterna... 194 7e-48 tr|A0PX58|A0PX58_MYCUA Tax_Id=362242 (sigM)SubName: Full=Alterna... 187 5e-46 tr|B1MMM1|B1MMM1_MYCA9 Tax_Id=561007 SubName: Full=Possible alte... 182 2e-44 tr|Q0SAI8|Q0SAI8_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,... 172 2e-41 tr|O53590|O53590_MYCTU Tax_Id=1773 (sigM)SubName: Full=POSSIBLE ... 170 1e-40 tr|C1B7Q9|C1B7Q9_RHOOB Tax_Id=632772 (sigM)SubName: Full=RNA pol... 170 1e-40 tr|D5PUR9|D5PUR9_COREQ Tax_Id=525370 (sigM)SubName: Full=RNA pol... 166 2e-39 tr|D1S3X0|D1S3X0_9ACTO Tax_Id=644283 SubName: Full=RNA polymeras... 164 8e-39 tr|A4XDI9|A4XDI9_SALTO Tax_Id=369723 SubName: Full=Sigma-70 regi... 163 1e-38 tr|D3CGR2|D3CGR2_9ACTO Tax_Id=648999 SubName: Full=RNA polymeras... 161 5e-38 tr|C6WSK4|C6WSK4_ACTMD Tax_Id=446462 SubName: Full=RNA polymeras... 159 3e-37 tr|C0ZVN0|C0ZVN0_RHOE4 Tax_Id=234621 (sigM)SubName: Full=Putativ... 159 3e-37 tr|A8LXI9|A8LXI9_SALAI Tax_Id=391037 SubName: Full=RNA polymeras... 159 3e-37 tr|C4RHK6|C4RHK6_9ACTO Tax_Id=219305 SubName: Full=Sigma-70 regi... 158 3e-37 tr|Q5YMS9|Q5YMS9_NOCFA Tax_Id=37329 SubName: Full=Putative sigma... 157 7e-37 tr|C3JLB9|C3JLB9_RHOER Tax_Id=596309 SubName: Full=RNA polymeras... 157 7e-37 tr|C7MS50|C7MS50_SACVD Tax_Id=471857 SubName: Full=RNA polymeras... 155 3e-36 tr|D0L9B9|D0L9B9_GORB4 Tax_Id=526226 SubName: Full=RNA polymeras... 147 6e-34 >tr|A0R7I6|A0R7I6_MYCS2 Tax_Id=246196 SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium smegmatis] Length = 208 Score = 386 bits (992), Expect = e-106 Identities = 196/208 (94%), Positives = 196/208 (94%) Query: 1 MGRGEFAGAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQ 60 MGRGEFAGAAHTRSDAELLAAHVAGDRYAFEE AYLTSNHLDDADDAVQ Sbjct: 1 MGRGEFAGAAHTRSDAELLAAHVAGDRYAFEELVLRHHRQLRRLAYLTSNHLDDADDAVQ 60 Query: 61 EALLKAHRTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPA 120 EALLKAHRTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPA Sbjct: 61 EALLKAHRTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPA 120 Query: 121 ADPAPRVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARAR 180 ADPAPRVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARAR Sbjct: 121 ADPAPRVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARAR 180 Query: 181 AKLARTLQYFDGDEPQPATSAHRGAAHP 208 AKLARTLQYFDGDEPQPATSAHRGAAHP Sbjct: 181 AKLARTLQYFDGDEPQPATSAHRGAAHP 208 >tr|A3Q8R3|A3Q8R3_MYCSJ Tax_Id=164757 SubName: Full=Transcriptional regulator, Fis family;[Mycobacterium sp.] Length = 225 Score = 219 bits (559), Expect = 1e-55 Identities = 122/196 (62%), Positives = 141/196 (71%), Gaps = 8/196 (4%) Query: 13 RSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHRTAAT 72 RSDA+LLA HVAGDRYAF E A +TS++ +DA DA+QEA+L AHR AA+ Sbjct: 9 RSDAQLLADHVAGDRYAFAELFVRHQRQLERLARITSSNREDAADALQEAMLSAHRKAAS 68 Query: 73 FRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAADPAPRVTTAIT 132 FRFD AVSSWLYRIVVNACLDRLR RT ++T ++G A DP RV TAI Sbjct: 69 FRFDSAVSSWLYRIVVNACLDRLRTNRTHATSTLVDDVG-------SAGDPTARVDTAIV 121 Query: 133 VERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLARTLQYFDG 192 +ERALL+LPV+QRAAVVAVDMQGYSVAETAR+LGVAEGT+KSRC+R RAKLA TL+ D Sbjct: 122 IERALLRLPVEQRAAVVAVDMQGYSVAETARMLGVAEGTVKSRCSRGRAKLAETLRGLDE 181 Query: 193 DEPQPATSAHRGAAHP 208 E A RG HP Sbjct: 182 TETASPPPAGRG-CHP 196 >tr|Q1B0T3|Q1B0T3_MYCSS Tax_Id=164756 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 225 Score = 219 bits (558), Expect = 2e-55 Identities = 121/196 (61%), Positives = 141/196 (71%), Gaps = 8/196 (4%) Query: 13 RSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHRTAAT 72 RSDA+LLA HVAGDRYAF E A +TS++ +DA DA+QEA+L AHR AA+ Sbjct: 9 RSDAQLLADHVAGDRYAFAELFVRHQRQLERLARITSSNREDAADALQEAMLSAHRKAAS 68 Query: 73 FRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAADPAPRVTTAIT 132 FRFD AVSSWLYRIVVNACLDRLR RT ++T ++G A DP RV TAI Sbjct: 69 FRFDSAVSSWLYRIVVNACLDRLRTNRTHATSTLVDDVG-------SAGDPTSRVDTAIV 121 Query: 133 VERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLARTLQYFDG 192 +ERALL+LPV+QRAA+VAVDMQGYSVAETAR+LGVAEGT+KSRC+R RAKLA TL+ D Sbjct: 122 IERALLRLPVEQRAAIVAVDMQGYSVAETARMLGVAEGTVKSRCSRGRAKLAETLRGLDE 181 Query: 193 DEPQPATSAHRGAAHP 208 E A RG HP Sbjct: 182 TETASPPPAGRG-CHP 196 >tr|A1UPB7|A1UPB7_MYCSK Tax_Id=189918 SubName: Full=Transcriptional regulator, Fis family;[Mycobacterium sp.] Length = 225 Score = 219 bits (558), Expect = 2e-55 Identities = 121/196 (61%), Positives = 141/196 (71%), Gaps = 8/196 (4%) Query: 13 RSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHRTAAT 72 RSDA+LLA HVAGDRYAF E A +TS++ +DA DA+QEA+L AHR AA+ Sbjct: 9 RSDAQLLADHVAGDRYAFAELFVRHQRQLERLARITSSNREDAADALQEAMLSAHRKAAS 68 Query: 73 FRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAADPAPRVTTAIT 132 FRFD AVSSWLYRIVVNACLDRLR RT ++T ++G A DP RV TAI Sbjct: 69 FRFDSAVSSWLYRIVVNACLDRLRTNRTHATSTLVDDVG-------SAGDPTSRVDTAIV 121 Query: 133 VERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLARTLQYFDG 192 +ERALL+LPV+QRAA+VAVDMQGYSVAETAR+LGVAEGT+KSRC+R RAKLA TL+ D Sbjct: 122 IERALLRLPVEQRAAIVAVDMQGYSVAETARMLGVAEGTVKSRCSRGRAKLAETLRGLDE 181 Query: 193 DEPQPATSAHRGAAHP 208 E A RG HP Sbjct: 182 TETASPPPAGRG-CHP 196 >tr|C6DPE1|C6DPE1_MYCTK Tax_Id=478434 SubName: Full=RNA polymerase sigma factor sigM;[Mycobacterium tuberculosis] Length = 196 Score = 214 bits (546), Expect = 4e-54 Identities = 115/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RSDAELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+TAR+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|C1AJ51|C1AJ51_MYCBT Tax_Id=561275 (sigMa)SubName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 196 Score = 214 bits (546), Expect = 4e-54 Identities = 115/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RSDAELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+TAR+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|A5WUD2|A5WUD2_MYCTF Tax_Id=336982 SubName: Full=Alternative RNA polymerase sigma factor sigM;[Mycobacterium tuberculosis] Length = 196 Score = 214 bits (546), Expect = 4e-54 Identities = 115/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RSDAELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+TAR+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|A5U9N9|A5U9N9_MYCTA Tax_Id=419947 (sigM)SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium tuberculosis] Length = 196 Score = 214 bits (546), Expect = 4e-54 Identities = 115/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RSDAELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+TAR+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|A1KEF5|A1KEF5_MYCBP Tax_Id=410289 (sigMa_2)SubName: Full=Possible alternative RNA polymerase sigma factor sigMa [first part]; SubName: Full=Possible alternative rna polymerase sigma factor sigMa [FIRST PART];[Mycobacterium bovis] Length = 196 Score = 214 bits (546), Expect = 4e-54 Identities = 115/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RSDAELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+TAR+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|D6G6H5|D6G6H5_MYCTU Tax_Id=478435 SubName: Full=Alternative RNA polymerase sigma factor sigM;[Mycobacterium tuberculosis KZN 605] Length = 196 Score = 214 bits (546), Expect = 4e-54 Identities = 115/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RSDAELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+TAR+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|D6FV97|D6FV97_MYCTU Tax_Id=611304 SubName: Full=Alternative RNA polymerase sigma factor sigM;[Mycobacterium tuberculosis K85] Length = 196 Score = 214 bits (546), Expect = 4e-54 Identities = 115/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RSDAELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+TAR+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|D6FC39|D6FC39_MYCTU Tax_Id=611303 SubName: Full=Alternative RNA polymerase sigma factor sigM;[Mycobacterium tuberculosis CPHL_A] Length = 196 Score = 214 bits (546), Expect = 4e-54 Identities = 115/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RSDAELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+TAR+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|D6EZS2|D6EZS2_MYCTU Tax_Id=611302 SubName: Full=Alternative RNA polymerase sigma factor sigM;[Mycobacterium tuberculosis T46] Length = 196 Score = 214 bits (546), Expect = 4e-54 Identities = 115/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RSDAELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+TAR+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|D5ZB19|D5ZB19_MYCTU Tax_Id=537210 SubName: Full=Alternative RNA polymerase sigma factor sigM;[Mycobacterium tuberculosis T17] Length = 196 Score = 214 bits (546), Expect = 4e-54 Identities = 115/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RSDAELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+TAR+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|D5YYI9|D5YYI9_MYCTU Tax_Id=515616 SubName: Full=RNA polymerase sigma factor SigM;[Mycobacterium tuberculosis 02_1987] Length = 196 Score = 214 bits (546), Expect = 4e-54 Identities = 115/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RSDAELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+TAR+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|D5YM17|D5YM17_MYCTU Tax_Id=520140 SubName: Full=Alternative RNA polymerase sigma factor sigM;[Mycobacterium tuberculosis EAS054] Length = 196 Score = 214 bits (546), Expect = 4e-54 Identities = 115/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RSDAELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+TAR+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|D5YAH6|D5YAH6_MYCTU Tax_Id=520141 SubName: Full=Alternative RNA polymerase sigma factor sigM;[Mycobacterium tuberculosis T85] Length = 196 Score = 214 bits (546), Expect = 4e-54 Identities = 115/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RSDAELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+TAR+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|D5XP85|D5XP85_MYCTU Tax_Id=515617 SubName: Full=Alternative RNA polymerase sigma factor sigM;[Mycobacterium tuberculosis T92] Length = 196 Score = 214 bits (546), Expect = 4e-54 Identities = 115/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RSDAELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+TAR+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|Q7TVD0|Q7TVD0_MYCBO Tax_Id=1765 (sigMa)SubName: Full=POSSIBLE ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGMa [FIRST PART];[Mycobacterium bovis] Length = 196 Score = 213 bits (543), Expect = 9e-54 Identities = 114/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RSDAELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+T+R+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTSRMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|Q8VIQ8|Q8VIQ8_MYCTU Tax_Id=1773 (sigM)SubName: Full=RNA polymerase sigma-70 factor, ECF subfamily;[Mycobacterium tuberculosis] Length = 196 Score = 213 bits (541), Expect = 1e-53 Identities = 114/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RS+AELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSNAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+TAR+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|A4KN19|A4KN19_MYCTU Tax_Id=395095 SubName: Full=Alternative RNA polymerase sigma factor sigM;[Mycobacterium tuberculosis str. Haarlem] Length = 196 Score = 213 bits (541), Expect = 1e-53 Identities = 114/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RS+AELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSNAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+TAR+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|A2VMT2|A2VMT2_MYCTU Tax_Id=348776 SubName: Full=Alternative RNA polymerase sigma factor sigM;[Mycobacterium tuberculosis C] Length = 196 Score = 213 bits (541), Expect = 1e-53 Identities = 114/186 (61%), Positives = 137/186 (73%), Gaps = 12/186 (6%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RS+AELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSNAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+TAR+LGVAEGT+KSRCARARA+LAR Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTARMLGVAEGTVKSRCARARARLAR 183 Query: 186 TLQYFD 191 L Y + Sbjct: 184 LLGYLN 189 >tr|A1TI17|A1TI17_MYCVP Tax_Id=350058 SubName: Full=Transcriptional regulator, Fis family;[Mycobacterium vanbaalenii] Length = 191 Score = 212 bits (540), Expect = 2e-53 Identities = 115/178 (64%), Positives = 131/178 (73%), Gaps = 7/178 (3%) Query: 13 RSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHRTAAT 72 R+DAELLAAHVAGDRYAFEE A LTS DDA DA+Q+ALL AHRTA T Sbjct: 16 RTDAELLAAHVAGDRYAFEELFHRHHRQLYRLAQLTSRDPDDAADALQDALLAAHRTART 75 Query: 73 FRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAADPAPRVTTAIT 132 FR D AVSSWLYRIVVNACLDRLRR R++ ++ P DP RV TAI Sbjct: 76 FRHDSAVSSWLYRIVVNACLDRLRRNRSRACE-------ELDDQAGPVVDPTGRVDTAIV 128 Query: 133 VERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLARTLQYF 190 VERAL++LP++QRAAVVAVDMQGYS+AETAR+LGVAEGT+KSRC+RAR KLA +L F Sbjct: 129 VERALMRLPLEQRAAVVAVDMQGYSIAETARMLGVAEGTVKSRCSRARTKLAASLDCF 186 >tr|A4T4S7|A4T4S7_MYCGI Tax_Id=350054 SubName: Full=Transcriptional regulator, Fis family;[Mycobacterium gilvum] Length = 189 Score = 206 bits (525), Expect = 1e-51 Identities = 115/178 (64%), Positives = 129/178 (72%), Gaps = 7/178 (3%) Query: 13 RSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHRTAAT 72 R+DAELLAAHVAGDRYAFEE A+LTS DDA DA+Q+A+L AHRTA T Sbjct: 15 RTDAELLAAHVAGDRYAFEELFHRHHRQLYRLAHLTSRDPDDAADALQDAMLAAHRTART 74 Query: 73 FRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAADPAPRVTTAIT 132 FR DCAVSSWLYRIVVNACLDRLRR +T+ ++ A DP V TAI Sbjct: 75 FRQDCAVSSWLYRIVVNACLDRLRRNKTRAWDV-------LDDESAGAFDPTGHVDTAIV 127 Query: 133 VERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLARTLQYF 190 VERALL LPV+QRAAVVAVDMQG+SVAETAR+LGV EGT+KSRC+RAR KLA L F Sbjct: 128 VERALLCLPVEQRAAVVAVDMQGFSVAETARMLGVPEGTVKSRCSRARTKLAAALDCF 185 >tr|Q73RU1|Q73RU1_MYCPA Tax_Id=1770 (sigM)SubName: Full=SigM;[Mycobacterium paratuberculosis] Length = 195 Score = 202 bits (513), Expect = 3e-50 Identities = 114/194 (58%), Positives = 135/194 (69%), Gaps = 12/194 (6%) Query: 13 RSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHRTAAT 72 RSDAELLAAHVAGDRYAF E A LT+ +DA+DA+Q+A+L AHR A Sbjct: 11 RSDAELLAAHVAGDRYAFGELFVRHQRHLHRLARLTTRSPEDAEDALQDAMLSAHRGAGA 70 Query: 73 FRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAADPAPRVTTAIT 132 FR D AV SWL+RIVVNACLDRLRRT+ P+ V L + P AD +V T + Sbjct: 71 FRHDAAVGSWLHRIVVNACLDRLRRTKAHPT----VPLEDIY----PVADRTAQVETTLA 122 Query: 133 VERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLARTLQYFDG 192 V+RAL++LPV+QRAA+VAVDMQGYSVA+TARLLGVAEGT+KSRCARAR +LA L Y D Sbjct: 123 VQRALMRLPVEQRAAIVAVDMQGYSVADTARLLGVAEGTVKSRCARARVRLAELLGYLDA 182 Query: 193 DEPQPATSAHRGAA 206 A +A GAA Sbjct: 183 G----AHAAAEGAA 192 >tr|A0QNC1|A0QNC1_MYCA1 Tax_Id=243243 SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium avium] Length = 195 Score = 202 bits (513), Expect = 3e-50 Identities = 114/194 (58%), Positives = 135/194 (69%), Gaps = 12/194 (6%) Query: 13 RSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHRTAAT 72 RSDAELLAAHVAGDRYAF E A LT+ +DA+DA+Q+A+L AHR A Sbjct: 11 RSDAELLAAHVAGDRYAFGELFVRHQRHLHRLARLTTRSPEDAEDALQDAMLSAHRGAGA 70 Query: 73 FRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAADPAPRVTTAIT 132 FR D AV SWL+RIVVNACLDRLRRT+ P+ V L + P AD +V T + Sbjct: 71 FRHDAAVGSWLHRIVVNACLDRLRRTKAHPT----VPLEDIY----PVADRTAQVETTLA 122 Query: 133 VERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLARTLQYFDG 192 V+RAL++LPV+QRAA+VAVDMQGYSVA+TARLLGVAEGT+KSRCARAR +LA L Y D Sbjct: 123 VQRALMRLPVEQRAAIVAVDMQGYSVADTARLLGVAEGTVKSRCARARVRLAELLGYLDA 182 Query: 193 DEPQPATSAHRGAA 206 A +A GAA Sbjct: 183 G----AHAAAEGAA 192 >tr|D5PA10|D5PA10_9MYCO Tax_Id=525368 (sigM)SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium parascrofulaceum ATCC BAA-614] Length = 203 Score = 197 bits (500), Expect = 8e-49 Identities = 109/177 (61%), Positives = 129/177 (72%), Gaps = 8/177 (4%) Query: 13 RSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHRTAAT 72 RSDAELLAAHV GDR+AF E A LT+ +DA+DA+Q+A+L AHR A + Sbjct: 11 RSDAELLAAHVDGDRHAFGELFLRHQRQLHRLARLTTRTAEDAEDALQDAMLSAHRAAGS 70 Query: 73 FRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAADPAPRVTTAIT 132 FR D AV SWL+RIVVNACLDRLRRT+ P+ V L V P AD +V TA+ Sbjct: 71 FRHDAAVDSWLHRIVVNACLDRLRRTKAHPT----VPLEDVY----PVADRTAQVETAVV 122 Query: 133 VERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLARTLQY 189 V+RAL++LPV+QRAAVVAVDMQGYSVA+TA LLGVAEGT+KSRCARARA+LA L Y Sbjct: 123 VQRALMRLPVEQRAAVVAVDMQGYSVADTAALLGVAEGTVKSRCARARARLAGLLGY 179 >tr|B2HNS6|B2HNS6_MYCMM Tax_Id=216594 (sigM)SubName: Full=Alternative RNA polymerase sigma factor SigM;[Mycobacterium marinum] Length = 195 Score = 194 bits (492), Expect = 7e-48 Identities = 108/192 (56%), Positives = 133/192 (69%), Gaps = 8/192 (4%) Query: 2 GRGEFAGAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQE 61 G+ + A R+DAELLAA VAG++ AFEE A LTS +DA+DA+QE Sbjct: 5 GKRQRRDTARQRTDAELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQE 64 Query: 62 ALLKAHRTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAA 121 A++ H A +FR D AV+SWL+RIVVNACLDRLRR +++P+ V L V P Sbjct: 65 AMISVHNCAGSFRQDAAVTSWLHRIVVNACLDRLRRAKSRPT----VPLEDVY----PVP 116 Query: 122 DPAPRVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARA 181 D RV TAI V RAL++LPV+QRAAVVAVDMQGYS+A+TA LLGVA+GT+KSRCAR RA Sbjct: 117 DATTRVETAILVRRALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRCARGRA 176 Query: 182 KLARTLQYFDGD 193 +LAR L Y D D Sbjct: 177 RLARLLGYLDAD 188 >tr|A0PX58|A0PX58_MYCUA Tax_Id=362242 (sigM)SubName: Full=Alternative RNA polymerase sigma factor SigM;[Mycobacterium ulcerans] Length = 195 Score = 187 bits (476), Expect = 5e-46 Identities = 105/192 (54%), Positives = 130/192 (67%), Gaps = 8/192 (4%) Query: 2 GRGEFAGAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQE 61 G+ + A R+DAELLAA VAG++ AFEE A LTS +DA+DA+QE Sbjct: 5 GKRQRRNTARQRTDAELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQE 64 Query: 62 ALLKAHRTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAA 121 A++ H A +FR D AV+SWL+RIVVNACL+RLRR ++P+ V L V P Sbjct: 65 AMISVHNCAGSFRQDAAVTSWLHRIVVNACLERLRRAESRPT----VPLEDVY----PVP 116 Query: 122 DPAPRVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARA 181 D RV TAI V RAL++LPV+QRAAVVAVDMQ YS+ +TA LLGVA+GT+KSRCAR RA Sbjct: 117 DATTRVETAILVRRALMRLPVEQRAAVVAVDMQRYSIPDTALLLGVAQGTVKSRCARGRA 176 Query: 182 KLARTLQYFDGD 193 +LAR L Y D D Sbjct: 177 RLARLLSYLDAD 188 >tr|B1MMM1|B1MMM1_MYCA9 Tax_Id=561007 SubName: Full=Possible alternative RNA polymerase sigma factor SigM;[Mycobacterium abscessus] Length = 194 Score = 182 bits (463), Expect = 2e-44 Identities = 103/178 (57%), Positives = 124/178 (69%), Gaps = 7/178 (3%) Query: 14 SDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHRTAATF 73 SDAELLAAHVAGD AFE+ A TS +DA DA+QEA+L AHR AA F Sbjct: 12 SDAELLAAHVAGDPSAFEQLFRRHHRRLYRLARATSRTPEDAADALQEAMLSAHRGAANF 71 Query: 74 RFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAADPAPRVTTAITV 133 R D AV+SWLYRIVVNACLDR+RR + A +EL + + DP+ V T+I + Sbjct: 72 RNDAAVTSWLYRIVVNACLDRMRRNK----AHIPIELEEDVYTLE---DPSTNVDTSIVI 124 Query: 134 ERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLARTLQYFD 191 ++ALL+LP +QRAAV+AVDMQGYSVA+ A LLGV EGT+KSRCARARA+LA L Y D Sbjct: 125 QKALLRLPAEQRAAVIAVDMQGYSVADAAELLGVPEGTVKSRCARARARLAVALHYLD 182 >tr|Q0SAI8|Q0SAI8_RHOSR Tax_Id=101510 SubName: Full=Sigma factor, sigma 70 type, group 4 (ECF);[Rhodococcus sp.] Length = 193 Score = 172 bits (436), Expect = 2e-41 Identities = 96/177 (54%), Positives = 118/177 (66%), Gaps = 3/177 (1%) Query: 14 SDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHRTAATF 73 SD +LLAAHVAGDR+AFE A TS +DA DA+QEALL AHR A +F Sbjct: 13 SDVDLLAAHVAGDRHAFETLLARHYDHLWHVAKRTSYTTEDAADALQEALLSAHRNAGSF 72 Query: 74 RFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAADPAPRVTTAITV 133 R D AV SWL+ IVVNACLDR+RR + +P+ + + + RD A D V ++ V Sbjct: 73 RRDAAVRSWLHTIVVNACLDRIRRNKARPAVS--LSADEDDEPRD-ARDYVSEVELSLVV 129 Query: 134 ERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLARTLQYF 190 ERAL QLP DQR A+VAVD++G S +E A LLGV EGT+KSRCAR R KLA +L+YF Sbjct: 130 ERALAQLPADQRTAIVAVDLEGRSTSEAAILLGVPEGTVKSRCARGRKKLAASLEYF 186 >tr|O53590|O53590_MYCTU Tax_Id=1773 (sigM)SubName: Full=POSSIBLE ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGM;[Mycobacterium tuberculosis] Length = 222 Score = 170 bits (430), Expect = 1e-40 Identities = 94/165 (56%), Positives = 112/165 (67%), Gaps = 12/165 (7%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G H RSDAELLAAHVAGDRYAF++ A LTS +DADDA+Q+A+L AH Sbjct: 14 GGRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAH 73 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRD--PAADPAP 125 R A +FR+D AVSSWL+RIVVNACLDRLRR + P+A L D P AD Sbjct: 74 RGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAP----------LEDVYPVADRTA 123 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEG 170 +V TAI V+RAL++LPV+QRAAVVAVDMQGYS+A+T G G Sbjct: 124 QVETAIAVQRALMRLPVEQRAAVVAVDMQGYSIADTRPDAGRGRG 168 >tr|C1B7Q9|C1B7Q9_RHOOB Tax_Id=632772 (sigM)SubName: Full=RNA polymerase ECF-type sigma factor SigM;[Rhodococcus opacus] Length = 193 Score = 170 bits (430), Expect = 1e-40 Identities = 95/177 (53%), Positives = 117/177 (66%), Gaps = 3/177 (1%) Query: 14 SDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHRTAATF 73 SD +LLAAHVAGDR+AFE A TS +DA DA+QEALL AHR A +F Sbjct: 13 SDVDLLAAHVAGDRHAFETLLGRHYDHLWHVAKRTSYTTEDAADALQEALLSAHRNAGSF 72 Query: 74 RFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAADPAPRVTTAITV 133 R D AV SWL+ IVVNACLDR+RR + +P+ + + + RD D V ++ V Sbjct: 73 RRDAAVRSWLHTIVVNACLDRIRRNKARPAVS--LSADEDDEPRD-TRDYVSEVELSLVV 129 Query: 134 ERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLARTLQYF 190 ERAL QLP DQR A+VAVD++G S +E A LLGV EGT+KSRCAR R KLA +L+YF Sbjct: 130 ERALAQLPPDQRTAIVAVDLEGRSTSEAAVLLGVPEGTVKSRCARGRKKLAASLEYF 186 >tr|D5PUR9|D5PUR9_COREQ Tax_Id=525370 (sigM)SubName: Full=RNA polymerase sigma-70 factor;[Rhodococcus equi ATCC 33707] Length = 193 Score = 166 bits (420), Expect = 2e-39 Identities = 100/182 (54%), Positives = 119/182 (65%), Gaps = 15/182 (8%) Query: 14 SDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHRTAATF 73 SD+ELLAAH +GD AF E A TS +DA DA+QEALL AHRTA +F Sbjct: 13 SDSELLAAHASGDGDAFAELLNRHYDHLWHVARRTSYTAEDAADALQEALLSAHRTAGSF 72 Query: 74 RFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAADPA---PRVT-- 128 R D AV SWL+ IVVNACLDR+RR R + + V+ D A DP R++ Sbjct: 73 REDAAVRSWLHTIVVNACLDRIRRNRVRQT---------VSLSNDDAEDPGDDRDRISER 123 Query: 129 -TAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLARTL 187 T+I V++AL +L DQRAAVVAVDM+GYSVAE AR LGV EGT+KSRCARAR KLA L Sbjct: 124 ETSILVDQALQRLSPDQRAAVVAVDMEGYSVAEAARRLGVPEGTVKSRCARARTKLASHL 183 Query: 188 QY 189 +Y Sbjct: 184 EY 185 >tr|D1S3X0|D1S3X0_9ACTO Tax_Id=644283 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Micromonospora aurantiaca ATCC 27029] Length = 234 Score = 164 bits (414), Expect = 8e-39 Identities = 101/202 (50%), Positives = 121/202 (59%), Gaps = 7/202 (3%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 GA RSD ELL AH AGDR AF E A T ++A DA+Q+A+L AH Sbjct: 6 GAQPGRSDLELLRAHAAGDRDAFTELFRRHRDRLWAVALRTIGDREEAADALQDAMLSAH 65 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQ-----PSATHY-VELGHVNHLRDPAA 121 R AA FR D AV++WL+RIVVNACLDR+RR +T P H E G +PAA Sbjct: 66 RAAARFRGDSAVTTWLHRIVVNACLDRIRRRQTHATVPLPDGVHTDGEPGRHTGGPEPAA 125 Query: 122 DPAPRVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARA 181 PA TA+ V +AL LP +QRAA+V VD+QGY VAE A +LGVAEGT+KSRCAR RA Sbjct: 126 -PAHDHDTALVVRQALAALPAEQRAALVLVDVQGYPVAEVAAMLGVAEGTVKSRCARGRA 184 Query: 182 KLARTLQYFDGDEPQPATSAHR 203 +LA L + PA R Sbjct: 185 RLAVLLGHLRTGADAPAADVPR 206 >tr|A4XDI9|A4XDI9_SALTO Tax_Id=369723 SubName: Full=Sigma-70 region 2 domain protein;[Salinispora tropica] Length = 244 Score = 163 bits (413), Expect = 1e-38 Identities = 95/192 (49%), Positives = 118/192 (61%), Gaps = 4/192 (2%) Query: 9 AAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHR 68 A SD +LL AHVAGDR AF E A T ++A DA+Q+ALL AHR Sbjct: 18 ATEPASDLDLLRAHVAGDRDAFAELLHRHQDRLWAVALRTLGDREEAADALQDALLSAHR 77 Query: 69 TAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSA---THYVELGHVNHLRDPAADPAP 125 A FR D AV++WL+RIVVNACLDR+RR + P+ ++ +PAA PAP Sbjct: 78 AAGRFRGDSAVTTWLHRIVVNACLDRIRRRQAHPTVPLPDGVHDVAGATGGAEPAA-PAP 136 Query: 126 RVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLAR 185 TA+ V AL LPV+QRAA++ VD+QGY VAE AR+L VAEGT+KSRCAR RA+LA Sbjct: 137 DHDTALVVREALAALPVEQRAALILVDVQGYPVAEVARILDVAEGTVKSRCARGRARLAA 196 Query: 186 TLQYFDGDEPQP 197 L + QP Sbjct: 197 ALGHLRTAPEQP 208 >tr|D3CGR2|D3CGR2_9ACTO Tax_Id=648999 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Micromonospora sp. L5] Length = 234 Score = 161 bits (407), Expect = 5e-38 Identities = 99/202 (49%), Positives = 120/202 (59%), Gaps = 7/202 (3%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 GA RSD ELL AH AGDR AF E A T ++A DA+Q+A+L AH Sbjct: 6 GAQPGRSDLELLRAHAAGDRDAFTELFRRHRDRLWAVALRTIGDREEAADALQDAMLSAH 65 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQ-----PSATHY-VELGHVNHLRDPAA 121 R AA FR D AV++WL+RIVVNACLDR+RR +T P H E G +PAA Sbjct: 66 RAAARFRGDSAVTTWLHRIVVNACLDRIRRRQTHATVPLPDGVHTDGEPGRHTGGPEPAA 125 Query: 122 DPAPRVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARA 181 P+ TA+ V +AL LP +QRAA+V VD+QGY V E A +LGVAEGT+KSRCAR RA Sbjct: 126 -PSHDHDTALVVRQALAALPAEQRAALVLVDVQGYPVVEVAAMLGVAEGTVKSRCARGRA 184 Query: 182 KLARTLQYFDGDEPQPATSAHR 203 +LA L + PA R Sbjct: 185 RLAVLLGHLRTGTDAPAADVPR 206 >tr|C6WSK4|C6WSK4_ACTMD Tax_Id=446462 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Actinosynnema mirum] Length = 203 Score = 159 bits (401), Expect = 3e-37 Identities = 93/183 (50%), Positives = 116/183 (63%), Gaps = 13/183 (7%) Query: 10 AHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHRT 69 A SDAEL++AH AGD +AF E A T D+A DA+QEA + A R Sbjct: 3 AAASSDAELISAHAAGDPHAFSELVKRHRDRMWAVALRTLRDPDEAADALQEAFISAFRA 62 Query: 70 AATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAADPAPRVT- 128 AA FR + V++WL+RIVVNACLDRLRR +T+P+ E G P APR Sbjct: 63 AAGFRAESQVTTWLHRIVVNACLDRLRRRQTRPTVP-LPEAG-------PGEPVAPRDAM 114 Query: 129 ----TAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLA 184 T + V+ AL +LP +QRA +V VD++GYSVAETARLLG+AEGT+KSRCAR RAKLA Sbjct: 115 SERETRLVVQAALNELPEEQRAPIVLVDVEGYSVAETARLLGIAEGTVKSRCARGRAKLA 174 Query: 185 RTL 187 + L Sbjct: 175 KVL 177 >tr|C0ZVN0|C0ZVN0_RHOE4 Tax_Id=234621 (sigM)SubName: Full=Putative RNA polymerase ECF-type sigma factor SigM;[Rhodococcus erythropolis] Length = 208 Score = 159 bits (401), Expect = 3e-37 Identities = 100/198 (50%), Positives = 120/198 (60%), Gaps = 12/198 (6%) Query: 2 GRGEFAGAAHTRS---------DAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHL 52 G G AG +RS D ELL AHVAGDR+AF E A TS Sbjct: 7 GTGGGAGNFESRSFENKNLEPTDFELLTAHVAGDRHAFRELLVRHQDHLWHVARRTSYSD 66 Query: 53 DDADDAVQEALLKAHRTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGH 112 +DA DA+QE LL AHR AA FR D AV SWL+ IVVNACLDR+RR +++ A + + Sbjct: 67 EDAADALQEGLLSAHRKAAKFRGDAAVRSWLHTIVVNACLDRIRRNKSR--AAFSLSSEN 124 Query: 113 VNHLRDPAADPAPRVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTI 172 RD D A V ++TVE+AL LP +QRAAVVAVD++GY VAE A LGV GT+ Sbjct: 125 AEEPRD-HRDYAAGVDMSLTVEQALASLPPEQRAAVVAVDVEGYPVAEAAERLGVPVGTV 183 Query: 173 KSRCARARAKLARTLQYF 190 KSRCARAR +LA L+ F Sbjct: 184 KSRCARARKRLAAQLEDF 201 >tr|A8LXI9|A8LXI9_SALAI Tax_Id=391037 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Salinispora arenicola] Length = 246 Score = 159 bits (401), Expect = 3e-37 Identities = 98/198 (49%), Positives = 123/198 (62%), Gaps = 10/198 (5%) Query: 9 AAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHR 68 AA SD +LL AHVAGDR AF A T ++A DA+Q+ALL AHR Sbjct: 18 AADPPSDLDLLRAHVAGDRDAFAGLFHRHRDRLWAVALRTLGDREEAADALQDALLSAHR 77 Query: 69 TAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHL-----RDPAADP 123 A FR D AV++WL+RIVVNACLDR+RR + P+ + G +H +PAA P Sbjct: 78 AAGRFRGDSAVTTWLHRIVVNACLDRIRRRQAHPTVP--LPDGVRDHTGATGGTEPAA-P 134 Query: 124 APRVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKL 183 TA+ V AL LPV+QRAA+V VD+QGY VAE AR+L VAEGT+KSRCAR RA+L Sbjct: 135 VADHDTALVVREALAALPVEQRAALVLVDVQGYPVAEVARILDVAEGTVKSRCARGRARL 194 Query: 184 ARTLQYF--DGDEPQPAT 199 A TL + ++ QPA+ Sbjct: 195 AATLGHLRTAPEQEQPAS 212 >tr|C4RHK6|C4RHK6_9ACTO Tax_Id=219305 SubName: Full=Sigma-70 region 2 domain-containing protein;[Micromonospora sp. ATCC 39149] Length = 258 Score = 158 bits (400), Expect = 3e-37 Identities = 98/208 (47%), Positives = 122/208 (58%), Gaps = 11/208 (5%) Query: 8 GAAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAH 67 G SD +LL AHVAGDR AF E A T ++A DA+Q+ALL AH Sbjct: 3 GHGERTSDVDLLRAHVAGDRDAFTELFHRHRDRLWAVALRTIGDREEAADALQDALLSAH 62 Query: 68 RTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAADPAPRV 127 R AA FR D AV++WL+RIV+NACLDR+RR + P+ V L H A P P Sbjct: 63 RAAARFRGDSAVTTWLHRIVMNACLDRIRRRQAHPT----VPLPDGTHGGPFAGGPEPAA 118 Query: 128 -----TTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAK 182 TA+ V +AL +LP +QRAA++ D+QGY VAE AR+L VAEGT+KSRCAR RA+ Sbjct: 119 PVQDHDTALVVRQALAELPAEQRAALILFDVQGYPVAEVARILDVAEGTVKSRCARGRAR 178 Query: 183 LARTLQYF-DGDEP-QPATSAHRGAAHP 208 LA L + G P PAT A + P Sbjct: 179 LAVALGHLRTGALPDDPATDATGRSGQP 206 >tr|Q5YMS9|Q5YMS9_NOCFA Tax_Id=37329 SubName: Full=Putative sigma factor;[Nocardia farcinica] Length = 212 Score = 157 bits (397), Expect = 7e-37 Identities = 90/182 (49%), Positives = 115/182 (63%), Gaps = 5/182 (2%) Query: 9 AAHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHR 68 A H SD ELL AH AG +AF E A TS +DA D++Q+ALL AHR Sbjct: 27 ALHELSDVELLQAHAAGRGHAFAELLRRHNDHLWQTALRTSYTREDAADSLQDALLSAHR 86 Query: 69 TAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVE-LGHVNHLRDPAADPAPRV 127 TA TFR + V SWL+ IVVNACLDR+RR +T+ + + E L RD A+ + Sbjct: 87 TAGTFRAEAEVRSWLHAIVVNACLDRIRRNKTRRAVSFAPESLPERTEERDAFAE----L 142 Query: 128 TTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLARTL 187 ++ V+RAL LP DQR A+VAVD++GYSVA+ A +LGV EGTIKSRCARAR +L L Sbjct: 143 EMSLVVDRALFSLPPDQRTALVAVDLEGYSVADAAAMLGVPEGTIKSRCARARQRLQERL 202 Query: 188 QY 189 ++ Sbjct: 203 EF 204 >tr|C3JLB9|C3JLB9_RHOER Tax_Id=596309 SubName: Full=RNA polymerase sigma factor SigM;[Rhodococcus erythropolis SK121] Length = 208 Score = 157 bits (397), Expect = 7e-37 Identities = 99/198 (50%), Positives = 120/198 (60%), Gaps = 12/198 (6%) Query: 2 GRGEFAGAAHTRS---------DAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHL 52 G G AG +RS D ELL AHV GDR+AF E A TS Sbjct: 7 GTGGGAGKFESRSFENNNLEATDFELLTAHVEGDRHAFRELLTRHQDHLWHVARRTSYSD 66 Query: 53 DDADDAVQEALLKAHRTAATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGH 112 +DA DA+QE LL AHR AA FR D AV SWL+ IVVNACLDR+RR +++ + + E + Sbjct: 67 EDAADALQEGLLSAHRKAAKFRGDAAVRSWLHTIVVNACLDRIRRNKSRSAFSLSSE--N 124 Query: 113 VNHLRDPAADPAPRVTTAITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTI 172 RD D A V ++TVE+AL LP +QRAAVVAVD++GY VAE A LGV GT+ Sbjct: 125 AEEPRD-HRDYAATVDMSLTVEQALASLPPEQRAAVVAVDVEGYPVAEAAERLGVPVGTV 183 Query: 173 KSRCARARAKLARTLQYF 190 KSRCARAR +LA L+ F Sbjct: 184 KSRCARARKRLAAQLEDF 201 >tr|C7MS50|C7MS50_SACVD Tax_Id=471857 SubName: Full=RNA polymerase, sigma subunit, ECF family;[Saccharomonospora viridis] Length = 200 Score = 155 bits (392), Expect = 3e-36 Identities = 86/191 (45%), Positives = 120/191 (62%), Gaps = 7/191 (3%) Query: 14 SDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHRTAATF 73 +DA+L+AAH AGD +AF E A T ++A DA+Q+A + A R A+ F Sbjct: 7 TDADLIAAHAAGDPHAFNELVRRHRDRMWAVALRTVRDPEEAADALQDAFISAFRAASNF 66 Query: 74 RFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAA--DPAPRVTTAI 131 R + V++WL+RIVVNACLDR+RR + +P+ V L +H ++PA D T + Sbjct: 67 RAESQVTTWLHRIVVNACLDRVRRRQARPT----VPLPDTSH-QEPAVPRDSMAERETRL 121 Query: 132 TVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLARTLQYFD 191 +++AL QLP +QR +V VD++GYSVAETA+LLG+AEGT+KSRCAR RAKLA+ L Y Sbjct: 122 IIKQALEQLPEEQRVPIVLVDVEGYSVAETAQLLGIAEGTVKSRCARGRAKLAKLLGYLR 181 Query: 192 GDEPQPATSAH 202 + H Sbjct: 182 NPSSEGGVPTH 192 >tr|D0L9B9|D0L9B9_GORB4 Tax_Id=526226 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Gordonia bronchialis] Length = 196 Score = 147 bits (372), Expect = 6e-34 Identities = 87/178 (48%), Positives = 109/178 (61%), Gaps = 3/178 (1%) Query: 10 AHTRSDAELLAAHVAGDRYAFEEXXXXXXXXXXXXAYLTSNHLDDADDAVQEALLKAHRT 69 A TR+D +LL AH GD AF A T+ + DDA DA+Q+ALL AHR+ Sbjct: 16 ADTRTDEQLLTAHTTGDPDAFTTLIHRHLPYLWSVALRTTGNHDDAADALQDALLSAHRS 75 Query: 70 AATFRFDCAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAADPAPRVTT 129 A FR D V SWL+RI+VN+CLD RR+R +P T + V + D D V Sbjct: 76 APNFRADAKVQSWLHRILVNSCLDSYRRSRARP--TIPLPTWEVPEMAD-TTDHTVAVDL 132 Query: 130 AITVERALLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRCARARAKLARTL 187 ++++ AL L QRAA+VAVD++GYSVAE A LLGV EGTIKSRCAR R +LA TL Sbjct: 133 SMSIGDALTTLTDGQRAAIVAVDIEGYSVAEAATLLGVPEGTIKSRCARGRLRLAETL 190 Database: Amellifera_nr Posted date: Jul 23, 2010 5:10 AM Number of letters in database: 4,236,830,644 Number of sequences in database: 12,507,864 Lambda K H 0.320 0.130 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 12507864 Number of Hits to DB: 1,506,154,582 Number of extensions: 50319181 Number of successful extensions: 143046 Number of sequences better than 10.0: 8345 Number of HSP's gapped: 138972 Number of HSP's successfully gapped: 8353 Length of query: 208 Length of database: 4,236,830,644 Length adjustment: 132 Effective length of query: 76 Effective length of database: 2,585,792,596 Effective search space: 196520237296 Effective search space used: 196520237296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 77 (34.3 bits)