BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MMAR_0426
         (343 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,275,203 sequences; 3,846,993,858 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|B2HMV4|B2HMV4_MYCMM Tax_Id=216594 (sigG)RecName: Full=RNA pol...   656   0.0  
tr|A0PMU9|A0PMU9_MYCUA Tax_Id=362242 (sigG)RecName: Full=RNA pol...   642   0.0  
tr|Q73TU7|Q73TU7_MYCPA Tax_Id=1770 (sigG)RecName: Full=RNA polym...   513   e-143
tr|A0QMI0|A0QMI0_MYCA1 Tax_Id=243243 RecName: Full=RNA polymeras...   506   e-141
tr|Q7U2M7|Q7U2M7_MYCBO Tax_Id=1765 (sigG)RecName: Full=RNA polym...   502   e-140
tr|O07426|O07426_MYCTU Tax_Id=1773 (sigG)RecName: Full=RNA polym...   502   e-140
tr|C6DRI7|C6DRI7_MYCTK Tax_Id=478434 RecName: Full=RNA polymeras...   502   e-140
tr|C1AJK7|C1AJK7_MYCBT Tax_Id=561275 (sigG)RecName: Full=RNA pol...   502   e-140
tr|A5TYQ7|A5TYQ7_MYCTA Tax_Id=419947 (sigG)RecName: Full=RNA pol...   502   e-140
tr|A1KF02|A1KF02_MYCBP Tax_Id=410289 (sigG)RecName: Full=RNA pol...   502   e-140
tr|A5WIN7|A5WIN7_MYCTF Tax_Id=336982 RecName: Full=RNA polymeras...   502   e-140
tr|A4KNK5|A4KNK5_MYCTU Tax_Id=395095 RecName: Full=RNA polymeras...   502   e-140
tr|A2VNA7|A2VNA7_MYCTU Tax_Id=348776 RecName: Full=RNA polymeras...   502   e-140
tr|Q1BFS4|Q1BFS4_MYCSS Tax_Id=164756 RecName: Full=RNA polymeras...   413   e-113
tr|A1U958|A1U958_MYCSK Tax_Id=189918 RecName: Full=RNA polymeras...   413   e-113
tr|A3PSR5|A3PSR5_MYCSJ Tax_Id=164757 RecName: Full=RNA polymeras...   412   e-113
tr|A0QNZ6|A0QNZ6_MYCS2 Tax_Id=246196 RecName: Full=RNA polymeras...   411   e-113
tr|A4T3K9|A4T3K9_MYCGI Tax_Id=350054 RecName: Full=RNA polymeras...   410   e-112
tr|B1MKX7|B1MKX7_MYCA9 Tax_Id=561007 RecName: Full=RNA polymeras...   404   e-111
tr|A1T1F0|A1T1F0_MYCVP Tax_Id=350058 RecName: Full=RNA polymeras...   403   e-110
tr|Q0S5P5|Q0S5P5_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,...   399   e-109
tr|C1AWD1|C1AWD1_RHOOB Tax_Id=632772 (sigG)SubName: Full=RNA pol...   390   e-106
tr|C1A2E7|C1A2E7_RHOE4 Tax_Id=234621 (sigG)SubName: Full=Putativ...   383   e-104
tr|C3JTQ2|C3JTQ2_RHOER Tax_Id=596309 SubName: Full=RNA polymeras...   382   e-104
tr|D1AD13|D1AD13_THECU Tax_Id=471852 SubName: Full=RNA polymeras...   363   1e-98
tr|D0L6T7|D0L6T7_GORB4 Tax_Id=526226 SubName: Full=RNA polymeras...   361   6e-98
tr|C1YU74|C1YU74_NOCDA Tax_Id=446468 RecName: Full=RNA polymeras...   360   2e-97
tr|A8LWJ1|A8LWJ1_SALAI Tax_Id=391037 RecName: Full=RNA polymeras...   329   3e-88
tr|A1SQK3|A1SQK3_NOCSJ Tax_Id=196162 RecName: Full=RNA polymeras...   310   2e-82
tr|C1RMY4|C1RMY4_9CELL Tax_Id=446466 SubName: Full=RNA polymeras...   300   1e-79
tr|C7QBT1|C7QBT1_CATAD Tax_Id=479433 SubName: Full=RNA polymeras...   300   2e-79
tr|C2AMF4|C2AMF4_TSUPA Tax_Id=521096 SubName: Full=RNA polymeras...   296   3e-78
tr|C7PWF0|C7PWF0_CATAD Tax_Id=479433 SubName: Full=RNA polymeras...   295   7e-78
tr|C4DFI6|C4DFI6_9ACTO Tax_Id=446470 RecName: Full=RNA polymeras...   290   1e-76
tr|C1WR88|C1WR88_9ACTO Tax_Id=479435 RecName: Full=RNA polymeras...   270   1e-70
tr|C1WSW8|C1WSW8_9ACTO Tax_Id=479435 SubName: Full=RNA polymeras...   270   2e-70
tr|C1WJC7|C1WJC7_9ACTO Tax_Id=479435 RecName: Full=RNA polymeras...   267   2e-69
tr|C7Q641|C7Q641_CATAD Tax_Id=479433 RecName: Full=RNA polymeras...   263   2e-68
tr|C4RD83|C4RD83_9ACTO Tax_Id=219305 SubName: Full=RNA polymeras...   260   1e-67
tr|C7PXI3|C7PXI3_CATAD Tax_Id=479433 RecName: Full=RNA polymeras...   256   2e-66
tr|C0U5Z7|C0U5Z7_9ACTO Tax_Id=526225 SubName: Full=RNA polymeras...   252   4e-65
tr|A6WE33|A6WE33_KINRD Tax_Id=266940 SubName: Full=RNA polymeras...   251   7e-65
tr|B4VAP2|B4VAP2_9ACTO Tax_Id=465541 SubName: Full=RNA polymeras...   251   1e-64
tr|B5H528|B5H528_STRPR Tax_Id=457429 SubName: Full=RNA polymeras...   249   3e-64
tr|B5GSZ9|B5GSZ9_STRCL Tax_Id=443255 SubName: Full=RNA polymeras...   249   3e-64
tr|B5I671|B5I671_9ACTO Tax_Id=463191 RecName: Full=RNA polymeras...   248   1e-63
tr|C8X9W7|C8X9W7_NAKMY Tax_Id=479431 SubName: Full=RNA polymeras...   246   3e-63
tr|C4DQJ1|C4DQJ1_9ACTO Tax_Id=446470 RecName: Full=RNA polymeras...   246   3e-63
tr|C7QCL6|C7QCL6_CATAD Tax_Id=479433 SubName: Full=RNA polymeras...   246   4e-63
tr|C7Q586|C7Q586_CATAD Tax_Id=479433 SubName: Full=RNA polymeras...   241   9e-62

>tr|B2HMV4|B2HMV4_MYCMM Tax_Id=216594 (sigG)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium marinum]
          Length = 343

 Score =  656 bits (1692), Expect = 0.0
 Identities = 330/343 (96%), Positives = 331/343 (96%)

Query: 1   VSALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLV 60
           +SALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLV
Sbjct: 1   MSALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLV 60

Query: 61  QETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLV 120
           QETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLV
Sbjct: 61  QETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLV 120

Query: 121 ERAEVPWLEXXXXXXXXXXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKA 180
           ERAEVPWLE            SVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKA
Sbjct: 121 ERAEVPWLEPLPDLMADPADPSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKA 180

Query: 181 AEVAEAIGTTTVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDI 240
           AEVAEAIGTTTVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDI
Sbjct: 181 AEVAEAIGTTTVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDI 240

Query: 241 DRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMY 300
           DRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMY
Sbjct: 241 DRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMY 300

Query: 301 MRAGETHVPFQLHVLDMVDGRVSHVTAFLDGSLFPKFGLPASI 343
           MRAGETHVPFQLHVLDMVDGRVSHVTAFLDGSLFPKFGLPASI
Sbjct: 301 MRAGETHVPFQLHVLDMVDGRVSHVTAFLDGSLFPKFGLPASI 343


>tr|A0PMU9|A0PMU9_MYCUA Tax_Id=362242 (sigG)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium ulcerans]
          Length = 353

 Score =  642 bits (1657), Expect = 0.0
 Identities = 323/343 (94%), Positives = 327/343 (95%)

Query: 1   VSALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLV 60
           VSALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLV
Sbjct: 11  VSALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLV 70

Query: 61  QETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLV 120
           QETLLRAWKSYHRFEGKSSLRTWLHRIATNTC+SALEGRQRRPLPTGLAASGSDPTAPLV
Sbjct: 71  QETLLRAWKSYHRFEGKSSLRTWLHRIATNTCMSALEGRQRRPLPTGLAASGSDPTAPLV 130

Query: 121 ERAEVPWLEXXXXXXXXXXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKA 180
           ERAEVPWLE            SVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKA
Sbjct: 131 ERAEVPWLEPLPDLMADPADPSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKA 190

Query: 181 AEVAEAIGTTTVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDI 240
           AEVA+AIGTTTVAVNSLLQRARAQLET QPSADDGLVAPDSPEAQDLLTRYI AFEA+DI
Sbjct: 191 AEVAQAIGTTTVAVNSLLQRARAQLETVQPSADDGLVAPDSPEAQDLLTRYIAAFEAHDI 250

Query: 241 DRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMY 300
           DRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMY
Sbjct: 251 DRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMY 310

Query: 301 MRAGETHVPFQLHVLDMVDGRVSHVTAFLDGSLFPKFGLPASI 343
           MRAGET VPF LHVLDMV+GRVSHVTAFLDGSLFPKFGLPASI
Sbjct: 311 MRAGETRVPFLLHVLDMVEGRVSHVTAFLDGSLFPKFGLPASI 353


>tr|Q73TU7|Q73TU7_MYCPA Tax_Id=1770 (sigG)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium paratuberculosis]
          Length = 366

 Score =  513 bits (1320), Expect = e-143
 Identities = 256/326 (78%), Positives = 275/326 (84%)

Query: 18  APTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGK 77
           A T E +   G +F  HAEPYRRELLAHCYRMTGS+HDAEDLVQETLLRAWK+Y RFEGK
Sbjct: 32  AQTPEGDSVVGADFTAHAEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYDRFEGK 91

Query: 78  SSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLEXXXXXXXX 137
           SS+RTWLHRIATNTCLSALEGRQRRPLP GL A  +DPTA LVER EVPWLE        
Sbjct: 92  SSVRTWLHRIATNTCLSALEGRQRRPLPVGLGAPSADPTAELVERREVPWLEPLPALTDD 151

Query: 138 XXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSL 197
               SVIVGSRESVRLAFVAALQ+LSPRQRAVLLLRDVL W+AAEVAEAIGTTT AVNSL
Sbjct: 152 PADPSVIVGSRESVRLAFVAALQYLSPRQRAVLLLRDVLGWRAAEVAEAIGTTTAAVNSL 211

Query: 198 LQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPP 257
           LQRARAQL+   PSADD L  PDS E QDLL RYI AFE+YDIDRLVE+FTAEAIWEMPP
Sbjct: 212 LQRARAQLDAVGPSADDQLAQPDSAETQDLLARYIAAFESYDIDRLVELFTAEAIWEMPP 271

Query: 258 YAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGETHVPFQLHVLDM 317
           Y GWYQGAR I+TLIHQQCPAE  GDMRL+PL+ANGQPAAAMYMRAG+ H+PFQLHVLD+
Sbjct: 272 YTGWYQGARTIVTLIHQQCPAEGAGDMRLLPLIANGQPAAAMYMRAGDVHLPFQLHVLDV 331

Query: 318 VDGRVSHVTAFLDGSLFPKFGLPASI 343
              RVSHV AFLD SLF KFGLPA++
Sbjct: 332 RGDRVSHVVAFLDDSLFAKFGLPAAL 357


>tr|A0QMI0|A0QMI0_MYCA1 Tax_Id=243243 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium avium]
          Length = 327

 Score =  506 bits (1304), Expect = e-141
 Identities = 252/316 (79%), Positives = 270/316 (85%)

Query: 28  GDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRI 87
           G +F  HAEPYRRELLAHCYRMTGS+HDAEDLVQETLLRAWK+Y RFEGKSS+RTWLHRI
Sbjct: 3   GADFTAHAEPYRRELLAHCYRMTGSLHDAEDLVQETLLRAWKAYDRFEGKSSVRTWLHRI 62

Query: 88  ATNTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLEXXXXXXXXXXXXSVIVGS 147
           ATNTCLSALEGRQRRPLP GL A  +DPTA LVER EVPWLE            SVIVGS
Sbjct: 63  ATNTCLSALEGRQRRPLPVGLGAPSADPTAELVERREVPWLEPLPALSDDPADPSVIVGS 122

Query: 148 RESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLET 207
           RESVRLAFVAALQ+LSPRQRAVLLLRDVL W+AAEVAEAIGTTT AVNSLLQRARAQL+ 
Sbjct: 123 RESVRLAFVAALQYLSPRQRAVLLLRDVLGWRAAEVAEAIGTTTAAVNSLLQRARAQLDA 182

Query: 208 AQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARD 267
             PSADD    PDS E QDLL RYI AFE+YDIDRLVE+FTAEAIWEMPPY GWYQGAR 
Sbjct: 183 VGPSADDQPAQPDSAETQDLLARYIAAFESYDIDRLVELFTAEAIWEMPPYTGWYQGART 242

Query: 268 IITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGETHVPFQLHVLDMVDGRVSHVTA 327
           I+TLIHQQCPAE  GDMRL+PL+ANGQPAAAMYMRAG+ H+PFQLHVLD+   RVSHV A
Sbjct: 243 IVTLIHQQCPAEGAGDMRLLPLIANGQPAAAMYMRAGDVHLPFQLHVLDVRGDRVSHVVA 302

Query: 328 FLDGSLFPKFGLPASI 343
           FLD SLF KFGLPA++
Sbjct: 303 FLDDSLFAKFGLPAAL 318


>tr|Q7U2M7|Q7U2M7_MYCBO Tax_Id=1765 (sigG)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium bovis]
          Length = 370

 Score =  502 bits (1293), Expect = e-140
 Identities = 256/343 (74%), Positives = 280/343 (81%), Gaps = 11/343 (3%)

Query: 1   VSALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLV 60
           VS LA NS +        P  ER      +F+ H EPYRRELLAHCYRMTGS+HDAEDLV
Sbjct: 39  VSVLAENSGRE-------PADERR----GDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87

Query: 61  QETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLV 120
           QETLLRAWK+Y  F GKSSLRTWLHRIATNTCL+ALEGR+RRPLPTGL    +DP+  LV
Sbjct: 88  QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147

Query: 121 ERAEVPWLEXXXXXXXXXXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKA 180
           ER EV WLE            S IVG+RESVRLAFVAALQHLSPRQRAVLLLRDVLQWK+
Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207

Query: 181 AEVAEAIGTTTVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDI 240
           AEVA+AIGT+TVAVNSLLQRAR+QL+T +PSA D L APDSPEAQDLL RYI AFEAYDI
Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267

Query: 241 DRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMY 300
           DRLVE+FTAEAIWEMPPY GWYQGA+ I+TLIHQQCPA  PGDMRLI L+ANGQPAAAMY
Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327

Query: 301 MRAGETHVPFQLHVLDMVDGRVSHVTAFLDGSLFPKFGLPASI 343
           MRAG+ H+PFQLHVLDM   RVSHV AFLD +LFPKFGLP S+
Sbjct: 328 MRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370


>tr|O07426|O07426_MYCTU Tax_Id=1773 (sigG)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium tuberculosis]
          Length = 370

 Score =  502 bits (1293), Expect = e-140
 Identities = 256/343 (74%), Positives = 280/343 (81%), Gaps = 11/343 (3%)

Query: 1   VSALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLV 60
           VS LA NS +        P  ER      +F+ H EPYRRELLAHCYRMTGS+HDAEDLV
Sbjct: 39  VSVLAENSGRE-------PADERR----GDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87

Query: 61  QETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLV 120
           QETLLRAWK+Y  F GKSSLRTWLHRIATNTCL+ALEGR+RRPLPTGL    +DP+  LV
Sbjct: 88  QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147

Query: 121 ERAEVPWLEXXXXXXXXXXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKA 180
           ER EV WLE            S IVG+RESVRLAFVAALQHLSPRQRAVLLLRDVLQWK+
Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207

Query: 181 AEVAEAIGTTTVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDI 240
           AEVA+AIGT+TVAVNSLLQRAR+QL+T +PSA D L APDSPEAQDLL RYI AFEAYDI
Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267

Query: 241 DRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMY 300
           DRLVE+FTAEAIWEMPPY GWYQGA+ I+TLIHQQCPA  PGDMRLI L+ANGQPAAAMY
Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327

Query: 301 MRAGETHVPFQLHVLDMVDGRVSHVTAFLDGSLFPKFGLPASI 343
           MRAG+ H+PFQLHVLDM   RVSHV AFLD +LFPKFGLP S+
Sbjct: 328 MRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370


>tr|C6DRI7|C6DRI7_MYCTK Tax_Id=478434 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis]
          Length = 370

 Score =  502 bits (1293), Expect = e-140
 Identities = 256/343 (74%), Positives = 280/343 (81%), Gaps = 11/343 (3%)

Query: 1   VSALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLV 60
           VS LA NS +        P  ER      +F+ H EPYRRELLAHCYRMTGS+HDAEDLV
Sbjct: 39  VSVLAENSGRE-------PADERR----GDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87

Query: 61  QETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLV 120
           QETLLRAWK+Y  F GKSSLRTWLHRIATNTCL+ALEGR+RRPLPTGL    +DP+  LV
Sbjct: 88  QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147

Query: 121 ERAEVPWLEXXXXXXXXXXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKA 180
           ER EV WLE            S IVG+RESVRLAFVAALQHLSPRQRAVLLLRDVLQWK+
Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207

Query: 181 AEVAEAIGTTTVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDI 240
           AEVA+AIGT+TVAVNSLLQRAR+QL+T +PSA D L APDSPEAQDLL RYI AFEAYDI
Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267

Query: 241 DRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMY 300
           DRLVE+FTAEAIWEMPPY GWYQGA+ I+TLIHQQCPA  PGDMRLI L+ANGQPAAAMY
Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327

Query: 301 MRAGETHVPFQLHVLDMVDGRVSHVTAFLDGSLFPKFGLPASI 343
           MRAG+ H+PFQLHVLDM   RVSHV AFLD +LFPKFGLP S+
Sbjct: 328 MRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370


>tr|C1AJK7|C1AJK7_MYCBT Tax_Id=561275 (sigG)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium bovis]
          Length = 370

 Score =  502 bits (1293), Expect = e-140
 Identities = 256/343 (74%), Positives = 280/343 (81%), Gaps = 11/343 (3%)

Query: 1   VSALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLV 60
           VS LA NS +        P  ER      +F+ H EPYRRELLAHCYRMTGS+HDAEDLV
Sbjct: 39  VSVLAENSGRE-------PADERR----GDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87

Query: 61  QETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLV 120
           QETLLRAWK+Y  F GKSSLRTWLHRIATNTCL+ALEGR+RRPLPTGL    +DP+  LV
Sbjct: 88  QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147

Query: 121 ERAEVPWLEXXXXXXXXXXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKA 180
           ER EV WLE            S IVG+RESVRLAFVAALQHLSPRQRAVLLLRDVLQWK+
Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207

Query: 181 AEVAEAIGTTTVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDI 240
           AEVA+AIGT+TVAVNSLLQRAR+QL+T +PSA D L APDSPEAQDLL RYI AFEAYDI
Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267

Query: 241 DRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMY 300
           DRLVE+FTAEAIWEMPPY GWYQGA+ I+TLIHQQCPA  PGDMRLI L+ANGQPAAAMY
Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327

Query: 301 MRAGETHVPFQLHVLDMVDGRVSHVTAFLDGSLFPKFGLPASI 343
           MRAG+ H+PFQLHVLDM   RVSHV AFLD +LFPKFGLP S+
Sbjct: 328 MRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370


>tr|A5TYQ7|A5TYQ7_MYCTA Tax_Id=419947 (sigG)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium tuberculosis]
          Length = 370

 Score =  502 bits (1293), Expect = e-140
 Identities = 256/343 (74%), Positives = 280/343 (81%), Gaps = 11/343 (3%)

Query: 1   VSALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLV 60
           VS LA NS +        P  ER      +F+ H EPYRRELLAHCYRMTGS+HDAEDLV
Sbjct: 39  VSVLAENSGRE-------PADERR----GDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87

Query: 61  QETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLV 120
           QETLLRAWK+Y  F GKSSLRTWLHRIATNTCL+ALEGR+RRPLPTGL    +DP+  LV
Sbjct: 88  QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147

Query: 121 ERAEVPWLEXXXXXXXXXXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKA 180
           ER EV WLE            S IVG+RESVRLAFVAALQHLSPRQRAVLLLRDVLQWK+
Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207

Query: 181 AEVAEAIGTTTVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDI 240
           AEVA+AIGT+TVAVNSLLQRAR+QL+T +PSA D L APDSPEAQDLL RYI AFEAYDI
Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267

Query: 241 DRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMY 300
           DRLVE+FTAEAIWEMPPY GWYQGA+ I+TLIHQQCPA  PGDMRLI L+ANGQPAAAMY
Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327

Query: 301 MRAGETHVPFQLHVLDMVDGRVSHVTAFLDGSLFPKFGLPASI 343
           MRAG+ H+PFQLHVLDM   RVSHV AFLD +LFPKFGLP S+
Sbjct: 328 MRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370


>tr|A1KF02|A1KF02_MYCBP Tax_Id=410289 (sigG)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium bovis]
          Length = 370

 Score =  502 bits (1293), Expect = e-140
 Identities = 256/343 (74%), Positives = 280/343 (81%), Gaps = 11/343 (3%)

Query: 1   VSALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLV 60
           VS LA NS +        P  ER      +F+ H EPYRRELLAHCYRMTGS+HDAEDLV
Sbjct: 39  VSVLAENSGRE-------PADERR----GDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87

Query: 61  QETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLV 120
           QETLLRAWK+Y  F GKSSLRTWLHRIATNTCL+ALEGR+RRPLPTGL    +DP+  LV
Sbjct: 88  QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147

Query: 121 ERAEVPWLEXXXXXXXXXXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKA 180
           ER EV WLE            S IVG+RESVRLAFVAALQHLSPRQRAVLLLRDVLQWK+
Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207

Query: 181 AEVAEAIGTTTVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDI 240
           AEVA+AIGT+TVAVNSLLQRAR+QL+T +PSA D L APDSPEAQDLL RYI AFEAYDI
Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267

Query: 241 DRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMY 300
           DRLVE+FTAEAIWEMPPY GWYQGA+ I+TLIHQQCPA  PGDMRLI L+ANGQPAAAMY
Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327

Query: 301 MRAGETHVPFQLHVLDMVDGRVSHVTAFLDGSLFPKFGLPASI 343
           MRAG+ H+PFQLHVLDM   RVSHV AFLD +LFPKFGLP S+
Sbjct: 328 MRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370


>tr|A5WIN7|A5WIN7_MYCTF Tax_Id=336982 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis]
          Length = 370

 Score =  502 bits (1293), Expect = e-140
 Identities = 256/343 (74%), Positives = 280/343 (81%), Gaps = 11/343 (3%)

Query: 1   VSALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLV 60
           VS LA NS +        P  ER      +F+ H EPYRRELLAHCYRMTGS+HDAEDLV
Sbjct: 39  VSVLAENSGRE-------PADERR----GDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87

Query: 61  QETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLV 120
           QETLLRAWK+Y  F GKSSLRTWLHRIATNTCL+ALEGR+RRPLPTGL    +DP+  LV
Sbjct: 88  QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147

Query: 121 ERAEVPWLEXXXXXXXXXXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKA 180
           ER EV WLE            S IVG+RESVRLAFVAALQHLSPRQRAVLLLRDVLQWK+
Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207

Query: 181 AEVAEAIGTTTVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDI 240
           AEVA+AIGT+TVAVNSLLQRAR+QL+T +PSA D L APDSPEAQDLL RYI AFEAYDI
Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267

Query: 241 DRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMY 300
           DRLVE+FTAEAIWEMPPY GWYQGA+ I+TLIHQQCPA  PGDMRLI L+ANGQPAAAMY
Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327

Query: 301 MRAGETHVPFQLHVLDMVDGRVSHVTAFLDGSLFPKFGLPASI 343
           MRAG+ H+PFQLHVLDM   RVSHV AFLD +LFPKFGLP S+
Sbjct: 328 MRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370


>tr|A4KNK5|A4KNK5_MYCTU Tax_Id=395095 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis str. Haarlem]
          Length = 370

 Score =  502 bits (1293), Expect = e-140
 Identities = 256/343 (74%), Positives = 280/343 (81%), Gaps = 11/343 (3%)

Query: 1   VSALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLV 60
           VS LA NS +        P  ER      +F+ H EPYRRELLAHCYRMTGS+HDAEDLV
Sbjct: 39  VSVLAENSGRE-------PADERR----GDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87

Query: 61  QETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLV 120
           QETLLRAWK+Y  F GKSSLRTWLHRIATNTCL+ALEGR+RRPLPTGL    +DP+  LV
Sbjct: 88  QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147

Query: 121 ERAEVPWLEXXXXXXXXXXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKA 180
           ER EV WLE            S IVG+RESVRLAFVAALQHLSPRQRAVLLLRDVLQWK+
Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207

Query: 181 AEVAEAIGTTTVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDI 240
           AEVA+AIGT+TVAVNSLLQRAR+QL+T +PSA D L APDSPEAQDLL RYI AFEAYDI
Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267

Query: 241 DRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMY 300
           DRLVE+FTAEAIWEMPPY GWYQGA+ I+TLIHQQCPA  PGDMRLI L+ANGQPAAAMY
Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327

Query: 301 MRAGETHVPFQLHVLDMVDGRVSHVTAFLDGSLFPKFGLPASI 343
           MRAG+ H+PFQLHVLDM   RVSHV AFLD +LFPKFGLP S+
Sbjct: 328 MRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370


>tr|A2VNA7|A2VNA7_MYCTU Tax_Id=348776 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis C]
          Length = 370

 Score =  502 bits (1293), Expect = e-140
 Identities = 256/343 (74%), Positives = 280/343 (81%), Gaps = 11/343 (3%)

Query: 1   VSALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLV 60
           VS LA NS +        P  ER      +F+ H EPYRRELLAHCYRMTGS+HDAEDLV
Sbjct: 39  VSVLAENSGRE-------PADERR----GDFSAHTEPYRRELLAHCYRMTGSLHDAEDLV 87

Query: 61  QETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLV 120
           QETLLRAWK+Y  F GKSSLRTWLHRIATNTCL+ALEGR+RRPLPTGL    +DP+  LV
Sbjct: 88  QETLLRAWKAYEGFAGKSSLRTWLHRIATNTCLTALEGRRRRPLPTGLGRPSADPSGELV 147

Query: 121 ERAEVPWLEXXXXXXXXXXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKA 180
           ER EV WLE            S IVG+RESVRLAFVAALQHLSPRQRAVLLLRDVLQWK+
Sbjct: 148 ERREVSWLEPLPDVTDDPADPSTIVGNRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKS 207

Query: 181 AEVAEAIGTTTVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDI 240
           AEVA+AIGT+TVAVNSLLQRAR+QL+T +PSA D L APDSPEAQDLL RYI AFEAYDI
Sbjct: 208 AEVADAIGTSTVAVNSLLQRARSQLQTVRPSAADRLSAPDSPEAQDLLARYIAAFEAYDI 267

Query: 241 DRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMY 300
           DRLVE+FTAEAIWEMPPY GWYQGA+ I+TLIHQQCPA  PGDMRLI L+ANGQPAAAMY
Sbjct: 268 DRLVELFTAEAIWEMPPYTGWYQGAQAIVTLIHQQCPAYSPGDMRLISLIANGQPAAAMY 327

Query: 301 MRAGETHVPFQLHVLDMVDGRVSHVTAFLDGSLFPKFGLPASI 343
           MRAG+ H+PFQLHVLDM   RVSHV AFLD +LFPKFGLP S+
Sbjct: 328 MRAGDVHLPFQLHVLDMAADRVSHVVAFLDTTLFPKFGLPDSL 370


>tr|Q1BFS4|Q1BFS4_MYCSS Tax_Id=164756 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium sp.]
          Length = 337

 Score =  413 bits (1061), Expect = e-113
 Identities = 213/316 (67%), Positives = 242/316 (76%), Gaps = 6/316 (1%)

Query: 26  PAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLH 85
           P  D F   A+ YRRELLAHCYRMTGS+HDAEDLVQET LRAWKSY  F+GKSS+RTWL+
Sbjct: 22  PDEDAFLADAQKYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYKGFQGKSSVRTWLY 81

Query: 86  RIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLEXXXXXXXXXXXXSVIV 145
           RIATNT L+AL+GR RRPLPTGL A  SDP   + ERAEVPWL+            S IV
Sbjct: 82  RIATNTSLTALDGRARRPLPTGLGAPSSDPVDDIHERAEVPWLQPLPDDAGDP---SSIV 138

Query: 146 GSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQL 205
           GSRESVRLAF+AALQHLSPRQRAVL+LR+VLQWKAAEVA+A+GT+T AVNSLLQRARAQL
Sbjct: 139 GSRESVRLAFIAALQHLSPRQRAVLVLREVLQWKAAEVADALGTSTAAVNSLLQRARAQL 198

Query: 206 ETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGA 265
           +   PS DD L  P+SPEA+DLLTRYI AFE YD+DRL ++FTAEA+WEMPP+ GWYQG 
Sbjct: 199 DAIGPSEDDDLRPPESPEARDLLTRYIAAFETYDVDRLADLFTAEAVWEMPPFDGWYQGP 258

Query: 266 RDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGET--HVPFQLHVLDMVDGRVS 323
            DI+ L    CPAE  GDM+LIP  ANGQ AAA+YMR   T  H  FQLHVLD+    +S
Sbjct: 259 HDIVLLSKTHCPAERAGDMQLIPTTANGQTAAALYMRNPATGRHEAFQLHVLDVTADGIS 318

Query: 324 HVTAFLDGSLFPKFGL 339
           HV AF   + F  FGL
Sbjct: 319 HVVAF-HATTFAPFGL 333


>tr|A1U958|A1U958_MYCSK Tax_Id=189918 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium sp.]
          Length = 337

 Score =  413 bits (1061), Expect = e-113
 Identities = 213/316 (67%), Positives = 242/316 (76%), Gaps = 6/316 (1%)

Query: 26  PAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLH 85
           P  D F   A+ YRRELLAHCYRMTGS+HDAEDLVQET LRAWKSY  F+GKSS+RTWL+
Sbjct: 22  PDEDAFLADAQKYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYKGFQGKSSVRTWLY 81

Query: 86  RIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLEXXXXXXXXXXXXSVIV 145
           RIATNT L+AL+GR RRPLPTGL A  SDP   + ERAEVPWL+            S IV
Sbjct: 82  RIATNTSLTALDGRARRPLPTGLGAPSSDPVDDIHERAEVPWLQPLPDDAGDP---SSIV 138

Query: 146 GSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQL 205
           GSRESVRLAF+AALQHLSPRQRAVL+LR+VLQWKAAEVA+A+GT+T AVNSLLQRARAQL
Sbjct: 139 GSRESVRLAFIAALQHLSPRQRAVLVLREVLQWKAAEVADALGTSTAAVNSLLQRARAQL 198

Query: 206 ETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGA 265
           +   PS DD L  P+SPEA+DLLTRYI AFE YD+DRL ++FTAEA+WEMPP+ GWYQG 
Sbjct: 199 DAIGPSEDDDLRPPESPEARDLLTRYIAAFETYDVDRLADLFTAEAVWEMPPFDGWYQGP 258

Query: 266 RDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGET--HVPFQLHVLDMVDGRVS 323
            DI+ L    CPAE  GDM+LIP  ANGQ AAA+YMR   T  H  FQLHVLD+    +S
Sbjct: 259 HDIVLLSKTHCPAERAGDMQLIPTTANGQTAAALYMRNPATGRHEAFQLHVLDVTADGIS 318

Query: 324 HVTAFLDGSLFPKFGL 339
           HV AF   + F  FGL
Sbjct: 319 HVVAF-HATTFAPFGL 333


>tr|A3PSR5|A3PSR5_MYCSJ Tax_Id=164757 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium sp.]
          Length = 337

 Score =  412 bits (1058), Expect = e-113
 Identities = 212/316 (67%), Positives = 242/316 (76%), Gaps = 6/316 (1%)

Query: 26  PAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLH 85
           P  D F   A+ YRRELLAHCYRMTGS+HDAEDLVQET LRAWKSY  F+GKSS+RTWL+
Sbjct: 22  PDEDAFLADAQKYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYKGFQGKSSVRTWLY 81

Query: 86  RIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLEXXXXXXXXXXXXSVIV 145
           RIATNT L+AL+GR RRPLPTGL A  SDP   + ERAEVPWL+            S IV
Sbjct: 82  RIATNTSLTALDGRARRPLPTGLGAPSSDPVDDIHERAEVPWLQPLPDDAGDP---SSIV 138

Query: 146 GSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQL 205
           GSRESVRLAF+AALQHLSPRQRAVL+LR+VLQWKAAEVA+A+GT+T AVNSLLQRARAQL
Sbjct: 139 GSRESVRLAFIAALQHLSPRQRAVLVLREVLQWKAAEVADALGTSTAAVNSLLQRARAQL 198

Query: 206 ETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGA 265
           +   PS DD L  P+SPEA+DLLTRYI AFE YD+D+L ++FTAEA+WEMPP+ GWYQG 
Sbjct: 199 DAIGPSEDDDLRPPESPEARDLLTRYIAAFETYDVDKLADLFTAEAVWEMPPFDGWYQGP 258

Query: 266 RDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGET--HVPFQLHVLDMVDGRVS 323
            DI+ L    CPAE  GDM+LIP  ANGQ AAA+YMR   T  H  FQLHVLD+    +S
Sbjct: 259 HDIVLLSKTHCPAERAGDMQLIPTTANGQTAAALYMRNPATGRHEAFQLHVLDVTADGIS 318

Query: 324 HVTAFLDGSLFPKFGL 339
           HV AF   + F  FGL
Sbjct: 319 HVVAF-HATTFAPFGL 333


>tr|A0QNZ6|A0QNZ6_MYCS2 Tax_Id=246196 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium smegmatis]
          Length = 340

 Score =  411 bits (1056), Expect = e-113
 Identities = 210/317 (66%), Positives = 240/317 (75%), Gaps = 3/317 (0%)

Query: 29  DEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIA 88
           D F   A+ YRRELLAHCYRMTGS+HDAEDLVQET LRAWKSY  F+G+SS+RTWL+RIA
Sbjct: 25  DAFLAEAQTYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYQGFQGRSSVRTWLYRIA 84

Query: 89  TNTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLEXXXXXXXXXXXXSVIVGSR 148
           TNTCL++LEGR RRPLP+GL    S PT  + E  EVPWLE            S IVG+R
Sbjct: 85  TNTCLTSLEGRSRRPLPSGLGTPSSAPTDQITEHHEVPWLEPLPDGDDPADP-SQIVGTR 143

Query: 149 ESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLETA 208
           ESVRLAFVAALQHLSPRQRAVL++R+VLQWKA+EV EAIG +T AVNSLLQRARAQLE  
Sbjct: 144 ESVRLAFVAALQHLSPRQRAVLVMREVLQWKASEVGEAIGASTAAVNSLLQRARAQLEAV 203

Query: 209 QPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARDI 268
            P+ DD + APDSP+AQ  L RYI AFEAYDID+LVE+FT EAIWEMPP+  WYQG + I
Sbjct: 204 GPNEDDKIEAPDSPQAQATLDRYIAAFEAYDIDKLVELFTEEAIWEMPPFDSWYQGPQAI 263

Query: 269 ITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGET--HVPFQLHVLDMVDGRVSHVT 326
             L   +CPAE PGDMR +   ANGQPAAAMYM   ET  H  FQLHVLD+    +SHV 
Sbjct: 264 GDLSRYKCPAEEPGDMRFLQTTANGQPAAAMYMLNRETGRHEAFQLHVLDITADGISHVV 323

Query: 327 AFLDGSLFPKFGLPASI 343
           AF+   LF KFGLP ++
Sbjct: 324 AFMGEGLFKKFGLPETL 340


>tr|A4T3K9|A4T3K9_MYCGI Tax_Id=350054 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium gilvum]
          Length = 340

 Score =  410 bits (1054), Expect = e-112
 Identities = 211/331 (63%), Positives = 244/331 (73%), Gaps = 3/331 (0%)

Query: 16  FTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFE 75
           F    A  E  A D F   A+ YRRELLAHCYRMTGS+HDAEDLVQET LRAWKSY RFE
Sbjct: 10  FVTVLALDEGGAKDAFLADAQKYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSYDRFE 69

Query: 76  GKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLEXXXXXX 135
           GKSS+RTWL+RIATNTCL+AL+GR+RRPLP+GL    +DP A L ER E+ WLE      
Sbjct: 70  GKSSVRTWLYRIATNTCLTALDGRKRRPLPSGLGGPSADPYADLTERHEIAWLEPIPDDP 129

Query: 136 XXXXXX-SVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAV 194
                  SVI  SRESVRLA +AALQHLSPRQRAVL+LR+VLQWKAAEV E IG +T AV
Sbjct: 130 HEDPADPSVIAESRESVRLALIAALQHLSPRQRAVLVLREVLQWKAAEVGEVIGASTAAV 189

Query: 195 NSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWE 254
           NSLLQRARAQL+   PS DD  V+P+SP+A + L +YI AFE YD+DRLVE+FTA+A+WE
Sbjct: 190 NSLLQRARAQLDEVAPSRDDQPVSPESPQAAEALAKYIAAFEDYDMDRLVELFTADAVWE 249

Query: 255 MPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGET--HVPFQL 312
           MPP+ GWY G  DII L    CPA   GDMR +   ANGQP AA+YMR  ET  H  FQL
Sbjct: 250 MPPFDGWYSGPADIIALSKYHCPAAGAGDMRFLRTTANGQPVAALYMRNPETNVHEAFQL 309

Query: 313 HVLDMVDGRVSHVTAFLDGSLFPKFGLPASI 343
           HVLD+    ++HV AF+D SLF KFGLP ++
Sbjct: 310 HVLDLRTRGIAHVVAFMDVSLFRKFGLPETL 340


>tr|B1MKX7|B1MKX7_MYCA9 Tax_Id=561007 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium abscessus]
          Length = 321

 Score =  404 bits (1038), Expect = e-111
 Identities = 202/316 (63%), Positives = 239/316 (75%), Gaps = 5/316 (1%)

Query: 29  DEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIA 88
           DEF  H E YRRE+LAHCYRMTGS+HDAEDLVQET LR WK+Y RFEGKSS+RTWL+RIA
Sbjct: 8   DEFLSHTEQYRREILAHCYRMTGSIHDAEDLVQETYLRGWKAYARFEGKSSVRTWLYRIA 67

Query: 89  TNTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLEXXXXXXXXXXXXSVIVGSR 148
           TNTCL+ALEG+QRRPLPTGL A  +DP   L ER+E+PWLE            + IVG+R
Sbjct: 68  TNTCLTALEGKQRRPLPTGLGAPSADPLDELDERSEIPWLE---PLPDDATDPASIVGAR 124

Query: 149 ESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLETA 208
           ESVRLAFVAALQHL  +QRAVL+LR+VLQWKA EVAEAIG+TT AVNSLLQRARAQL   
Sbjct: 125 ESVRLAFVAALQHLPAKQRAVLVLREVLQWKAQEVAEAIGSTTAAVNSLLQRARAQLHEV 184

Query: 209 QPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARDI 268
            P  ++ L+ P+ P  ++ L +YI AFE YD++ + ++FT EAIWEMPP+ GWYQG   I
Sbjct: 185 SPH-EETLLEPEDPMLREQLRQYINAFERYDVEAIAKMFTTEAIWEMPPFTGWYQGGPSI 243

Query: 269 ITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGE-THVPFQLHVLDMVDGRVSHVTA 327
             LI +QCPAE  GDMRL+   ANGQPA  +YMR G+  H PFQ+HVLD+    V+HV  
Sbjct: 244 AALIKEQCPAEHAGDMRLVETSANGQPAIGLYMREGDGVHRPFQMHVLDVTQDGVAHVVC 303

Query: 328 FLDGSLFPKFGLPASI 343
           F D SLF KFGLPA +
Sbjct: 304 FFDISLFEKFGLPAEL 319


>tr|A1T1F0|A1T1F0_MYCVP Tax_Id=350058 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium vanbaalenii]
          Length = 340

 Score =  403 bits (1035), Expect = e-110
 Identities = 207/332 (62%), Positives = 243/332 (73%), Gaps = 3/332 (0%)

Query: 15  NFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRF 74
           +F   TA  +  A D F   A+ YRRELLAHCYRMTGS+HDAEDLVQET LRAWKS+  F
Sbjct: 9   HFVTVTALDDSSAEDAFLADAQRYRRELLAHCYRMTGSLHDAEDLVQETYLRAWKSFKGF 68

Query: 75  EGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLEXXXXX 134
           +GKSS+RTWL+RIATNTCL+AL+G +RR LP+GL    SDP   L  R EV WLE     
Sbjct: 69  QGKSSVRTWLYRIATNTCLTALDGNKRRALPSGLGQPASDPAGELFVRPEVTWLEPLPDA 128

Query: 135 XXXXXXX-SVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVA 193
                   SVI  SRESVRLAF+AALQHL PRQRAVL+LR+VLQWKAAEV EA+GT+T A
Sbjct: 129 PREDPSDPSVIAESRESVRLAFIAALQHLPPRQRAVLVLREVLQWKAAEVGEAVGTSTAA 188

Query: 194 VNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIW 253
           VNSLLQRARAQL+   PS DD  V P+SPEA +LL +YI AFE YD+DRLVE+FT +A+W
Sbjct: 189 VNSLLQRARAQLDEISPSRDDEPVPPESPEAAELLDKYIAAFEDYDMDRLVELFTDDAVW 248

Query: 254 EMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGET--HVPFQ 311
           EMPP+ GWYQG  +I+TL   QCPAE  GDMR +   ANGQP AA+YMR  ET  H  FQ
Sbjct: 249 EMPPFDGWYQGPANIVTLSKVQCPAEKAGDMRFLRTTANGQPVAALYMRNPETGVHEAFQ 308

Query: 312 LHVLDMVDGRVSHVTAFLDGSLFPKFGLPASI 343
           LHVLD     ++HV AF +  LF +FGLP ++
Sbjct: 309 LHVLDAGKAGITHVVAFKENDLFARFGLPDTL 340


>tr|Q0S5P5|Q0S5P5_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,
           sigma 70 type, group 4 (ECF);[Rhodococcus sp.]
          Length = 327

 Score =  399 bits (1025), Expect = e-109
 Identities = 200/314 (63%), Positives = 237/314 (75%), Gaps = 4/314 (1%)

Query: 30  EFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIAT 89
           +F   A+PYRRELLAHCYRM GS+HDAED +QET +RAW+ Y  ++ ++SLRTWL++IAT
Sbjct: 10  DFLALADPYRRELLAHCYRMMGSLHDAEDQMQETFIRAWRGYDGYQQQASLRTWLYKIAT 69

Query: 90  NTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLE--XXXXXXXXXXXXSVIVGS 147
           NTCL+AL+ + +RPLP+GL A  SDPTA LVER EVPWLE              + +V S
Sbjct: 70  NTCLTALQSKSKRPLPSGLGAPDSDPTADLVERHEVPWLEPLPNRLIDDDANDPATVVTS 129

Query: 148 RESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLET 207
           RESVRLAF+AALQHL  RQRAVL+LRDVLQWKA+EVA A+GTTT AVNSLLQRARAQLE 
Sbjct: 130 RESVRLAFIAALQHLPARQRAVLVLRDVLQWKASEVAAALGTTTTAVNSLLQRARAQLEL 189

Query: 208 AQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARD 267
           A P+AD  LV P+SPE +DLL RY+ AFE YDID +VE+FT +A+WEMPP+ GWY+G   
Sbjct: 190 ATPTADT-LVEPESPEERDLLDRYVAAFENYDIDAIVELFTKDAVWEMPPFDGWYRGGPS 248

Query: 268 IITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGE-THVPFQLHVLDMVDGRVSHVT 326
           I TLI   CPA  PGDMRL+P  ANGQPA  +YMR  +  H PFQLHVLD+    VSHV 
Sbjct: 249 IGTLIRGNCPANAPGDMRLVPTAANGQPALGLYMRGEDGVHRPFQLHVLDVTADGVSHVV 308

Query: 327 AFLDGSLFPKFGLP 340
            F D  LF KFGLP
Sbjct: 309 CFFDVDLFEKFGLP 322


>tr|C1AWD1|C1AWD1_RHOOB Tax_Id=632772 (sigG)SubName: Full=RNA
           polymerase ECF-type sigma factor SigG;[Rhodococcus
           opacus]
          Length = 327

 Score =  390 bits (1003), Expect = e-106
 Identities = 197/314 (62%), Positives = 237/314 (75%), Gaps = 4/314 (1%)

Query: 30  EFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIAT 89
           EF   A+PYRRELLAHCYRM GS+HDAED +QET +RAW+ Y  ++ ++SLRTWL++IAT
Sbjct: 10  EFLALADPYRRELLAHCYRMMGSLHDAEDQMQETFIRAWRGYDGYQQQASLRTWLYKIAT 69

Query: 90  NTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLE--XXXXXXXXXXXXSVIVGS 147
           NTCL+AL+ R +RPLP+GL A  SDPTA LVER EVPWL               + +V S
Sbjct: 70  NTCLTALQNRSKRPLPSGLGAPDSDPTAELVERHEVPWLGPLPNRLIDDDASDPATVVTS 129

Query: 148 RESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLET 207
           RESVRLAF+AALQHL  RQRAVL+LRDVLQWKA+EVA A+GTTT AVNSLLQRAR QLE 
Sbjct: 130 RESVRLAFIAALQHLPARQRAVLVLRDVLQWKASEVATALGTTTTAVNSLLQRARTQLEL 189

Query: 208 AQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARD 267
           A PSAD  LV P+SPE ++LL RY+ AFE YDID +VE+FT +A+WEMPP+ GWY+G   
Sbjct: 190 ATPSADT-LVEPESPEERELLDRYVAAFENYDIDGIVELFTKDAVWEMPPFEGWYRGGTA 248

Query: 268 IITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGE-THVPFQLHVLDMVDGRVSHVT 326
           I TLI ++CPA+  GDM+L+  V+NGQPA  +YMR  +  H PFQLHVLD+    VSHV 
Sbjct: 249 IGTLISEKCPAKAAGDMQLVSTVSNGQPALGLYMRGEDGVHRPFQLHVLDVTAEGVSHVV 308

Query: 327 AFLDGSLFPKFGLP 340
            F D  LF KFGLP
Sbjct: 309 CFFDVDLFEKFGLP 322


>tr|C1A2E7|C1A2E7_RHOE4 Tax_Id=234621 (sigG)SubName: Full=Putative
           RNA polymerase ECF-type sigma factor SigG;[Rhodococcus
           erythropolis]
          Length = 324

 Score =  383 bits (983), Expect = e-104
 Identities = 194/316 (61%), Positives = 236/316 (74%), Gaps = 3/316 (0%)

Query: 30  EFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIAT 89
           +F   A+PYRRELLAHCYRM GS+HDAED VQET +RAW+ +  ++G+SSLRTWL+RIAT
Sbjct: 10  DFLTLADPYRRELLAHCYRMMGSIHDAEDQVQETFIRAWRGFDGYKGQSSLRTWLYRIAT 69

Query: 90  NTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLE-XXXXXXXXXXXXSVIVGSR 148
           NTCL+ALEGR RRPLPTGL A  SDP   L+ER E+ WLE             +V+V +R
Sbjct: 70  NTCLTALEGRSRRPLPTGLGAPSSDPADDLIERNEIAWLEPIADSALGDVNDPAVMVVNR 129

Query: 149 ESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLETA 208
           +SVRLA VAALQHLS RQRAVL+LRDVLQWKA+EVAEA+ TTT AVNSLLQRARAQ+   
Sbjct: 130 DSVRLALVAALQHLSARQRAVLVLRDVLQWKASEVAEALDTTTTAVNSLLQRARAQINHI 189

Query: 209 QPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARDI 268
            P+ DD LV P +  A+ LL  Y+ +FE+YD++ +VE+FT EAIWEMPP+ GWYQG   I
Sbjct: 190 GPTEDD-LVEPSTEAARKLLRDYVHSFESYDVEAIVELFTREAIWEMPPFEGWYQGPEAI 248

Query: 269 ITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGE-THVPFQLHVLDMVDGRVSHVTA 327
             LI  +CPA+ PG MRL+P  ANGQPA  +YMR  +  H  FQLHVLD+ +  +SHVT 
Sbjct: 249 GQLIGTKCPADGPGAMRLLPTAANGQPAFGLYMREPDGVHRAFQLHVLDVTESGISHVTC 308

Query: 328 FLDGSLFPKFGLPASI 343
           F D SLF +FGLPA +
Sbjct: 309 FFDLSLFARFGLPAEL 324


>tr|C3JTQ2|C3JTQ2_RHOER Tax_Id=596309 SubName: Full=RNA polymerase
           sigma-70 factor family protein;[Rhodococcus erythropolis
           SK121]
          Length = 324

 Score =  382 bits (982), Expect = e-104
 Identities = 194/316 (61%), Positives = 236/316 (74%), Gaps = 3/316 (0%)

Query: 30  EFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIAT 89
           +F   A+PYRRELLAHCYRM GS+HDAED VQET +RAW+ +  ++G+SSLRTWL+RIAT
Sbjct: 10  DFLTLADPYRRELLAHCYRMMGSIHDAEDQVQETFIRAWRGFDGYKGQSSLRTWLYRIAT 69

Query: 90  NTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLE-XXXXXXXXXXXXSVIVGSR 148
           NTCL+ALEGR RRPLPTGL A  SDP   L+ER E+ WLE             +V+V +R
Sbjct: 70  NTCLTALEGRSRRPLPTGLGAPSSDPADDLIERNEIAWLEPIADSALGDVNDPAVMVVNR 129

Query: 149 ESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLETA 208
           +SVRLA VAALQHLS RQRAVL+LRDVLQWKA+EVAEA+ TTT AVNSLLQRARAQ+   
Sbjct: 130 DSVRLALVAALQHLSARQRAVLVLRDVLQWKASEVAEALDTTTTAVNSLLQRARAQINHI 189

Query: 209 QPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARDI 268
            P+ DD LV P +  A+ LL  Y+ +FE+YD++ +VE+FT EAIWEMPP+ GWYQG   I
Sbjct: 190 GPTEDD-LVEPTTEAARKLLRDYVHSFESYDVEAIVELFTREAIWEMPPFEGWYQGPEAI 248

Query: 269 ITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGE-THVPFQLHVLDMVDGRVSHVTA 327
             LI  +CPA+ PG MRL+P  ANGQPA  +YMR  +  H  FQLHVLD+ +  +SHVT 
Sbjct: 249 GQLIGTKCPADGPGAMRLLPTAANGQPAFGLYMREPDGVHRAFQLHVLDVTESGISHVTC 308

Query: 328 FLDGSLFPKFGLPASI 343
           F D SLF +FGLPA +
Sbjct: 309 FFDLSLFARFGLPAEL 324


>tr|D1AD13|D1AD13_THECU Tax_Id=471852 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Thermomonospora curvata
           DSM 43183]
          Length = 332

 Score =  363 bits (933), Expect = 1e-98
 Identities = 188/328 (57%), Positives = 231/328 (70%), Gaps = 6/328 (1%)

Query: 20  TAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSS 79
           TA R+RP  +EFA  A+P+RREL+AHCYRM GSVHDAEDLVQET LRAW++Y RFEG+S+
Sbjct: 2   TATRDRPGVEEFARLADPFRRELMAHCYRMLGSVHDAEDLVQETYLRAWRAYDRFEGRSA 61

Query: 80  LRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLE--XXXXXXXX 137
           LRTWL+RIAT  CL+ALE R RRP+P GL A  +DP   LVER EVPWLE          
Sbjct: 62  LRTWLYRIATRACLTALESRARRPMPAGLGAPSADPAGDLVERPEVPWLEPVPDELVGAD 121

Query: 138 XXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSL 197
               + +V SRES+RLAFVAALQHL PRQRAVLLLR+VL W+AAEVAE +G +T AVNS+
Sbjct: 122 DADPAAVVVSRESIRLAFVAALQHLPPRQRAVLLLREVLGWRAAEVAETVGVSTAAVNSM 181

Query: 198 LQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPP 257
           LQRARA+L  A P   DG   P +   +DLL RY+ AFEA D+  +V + T +A+WEMPP
Sbjct: 182 LQRARARLRRAAPGR-DGTAGPLTAGQRDLLDRYVRAFEAKDVPAIVALLTDDAVWEMPP 240

Query: 258 YAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYM--RAGETHVPFQLHVL 315
           +  WY+G   I   +  +CPA  PG +R++P+ ANGQPA A Y+  RA   + PF L VL
Sbjct: 241 FPAWYRGPAAIGHHLAHRCPAG-PGGLRIVPVAANGQPALAQYLRDRADGAYRPFNLQVL 299

Query: 316 DMVDGRVSHVTAFLDGSLFPKFGLPASI 343
            +   RVSHV  FLD +LF  FGLP  +
Sbjct: 300 TLTGDRVSHVANFLDTALFAVFGLPPQL 327


>tr|D0L6T7|D0L6T7_GORB4 Tax_Id=526226 SubName: Full=RNA polymerase
           sigma-70 factor;[Gordonia bronchialis]
          Length = 348

 Score =  361 bits (927), Expect = 6e-98
 Identities = 183/323 (56%), Positives = 232/323 (71%), Gaps = 11/323 (3%)

Query: 30  EFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIAT 89
           EF    EP+RRE++AHCYRM GS HDAEDL Q+T LRAW+ Y +F+ +SS+RTWLH+IAT
Sbjct: 13  EFLQVTEPFRREIVAHCYRMMGSHHDAEDLTQDTYLRAWRGYSKFDHRSSVRTWLHKIAT 72

Query: 90  NTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLE-----XXXXXXXXXXXXSVI 144
           NTCL+AL+ RQRRPLP+GL     DPT  L++  EVPWLE                 + +
Sbjct: 73  NTCLTALQSRQRRPLPSGLGGDAFDPTDDLLQDHEVPWLEPFTGTVDDVSPGDDADPAYV 132

Query: 145 VGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQ 204
           VG+RESVRLAF+AALQHL  RQRAVL+LRDVLQWKAAEVA+ +G TT  VNSLLQRAR Q
Sbjct: 133 VGARESVRLAFIAALQHLPERQRAVLILRDVLQWKAAEVADTLGVTTATVNSLLQRAREQ 192

Query: 205 LETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQG 264
           L++++P+ +      D  + + LL +Y++AFE YD+D +VE+FT +AIWEMPP+ GWYQG
Sbjct: 193 LKSSRPTQETSSTLDDEAQ-RALLAKYVSAFERYDVDAIVELFTDKAIWEMPPFTGWYQG 251

Query: 265 ARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGE-THVPFQLHVLDM-VDGRV 322
           A  I TLI + CPAE PGD  L+P VANGQPA  +YMR  +  H PFQL VLD+   G+V
Sbjct: 252 AEQIGTLIRRNCPAEGPGDQILLPAVANGQPAFGLYMREPDGVHRPFQLQVLDLDPSGKV 311

Query: 323 SHVTAFLDGSL---FPKFGLPAS 342
            +V AF   ++   F +FGLPA+
Sbjct: 312 QYVVAFFSDTMEEDFARFGLPAT 334


>tr|C1YU74|C1YU74_NOCDA Tax_Id=446468 RecName: Full=RNA polymerase
           sigma factor;[Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 330

 Score =  360 bits (923), Expect = 2e-97
 Identities = 184/321 (57%), Positives = 226/321 (70%), Gaps = 5/321 (1%)

Query: 24  ERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTW 83
           E  +  +F   A+PYRREL AHCYRM GSVHDAEDLVQET LRAWK+Y RFEG+SSLRTW
Sbjct: 6   EHASDQDFMSAADPYRRELFAHCYRMLGSVHDAEDLVQETYLRAWKAYDRFEGRSSLRTW 65

Query: 84  LHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLEXXXXXXXXXXXXSV 143
           LHRIAT  CL+AL+ R+RRPLPTGL    ++P   L +R E+PWLE              
Sbjct: 66  LHRIATTACLTALDRRRRRPLPTGLGGPAAEPEGELADRPELPWLEPVPDALVGADDPGT 125

Query: 144 IVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARA 203
           +V +RESVRLA VAALQHL PRQRAVL+LRDVL++ AAEVA+ +G +  AVNSLLQRARA
Sbjct: 126 VVAARESVRLALVAALQHLRPRQRAVLILRDVLRYSAAEVADTLGVSVPAVNSLLQRARA 185

Query: 204 QLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQ 263
           QL    P+ ++  VA   PE +++L RY+ AFE+YDI  + E+FTA+A++EMPP+A W +
Sbjct: 186 QLARVTPAEEE--VAEPRPEQREVLDRYVDAFESYDISAITEVFTADAVFEMPPFATWVR 243

Query: 264 GARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGE-THVPFQLHVLDMVDG-- 320
           GA  I  LI   CPA  PGDM L+P  ANGQPA A+YMR G+  H  F + VL++  G  
Sbjct: 244 GAGHIGRLIAAHCPASGPGDMALVPTGANGQPAFALYMRGGDGVHRAFGIQVLELAPGGD 303

Query: 321 RVSHVTAFLDGSLFPKFGLPA 341
            V+H   F D SLF  FGLPA
Sbjct: 304 AVAHAVMFFDTSLFRHFGLPA 324


>tr|A8LWJ1|A8LWJ1_SALAI Tax_Id=391037 RecName: Full=RNA polymerase
           sigma factor;[Salinispora arenicola]
          Length = 338

 Score =  329 bits (843), Expect = 3e-88
 Identities = 175/317 (55%), Positives = 213/317 (67%), Gaps = 5/317 (1%)

Query: 30  EFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIAT 89
           +F+  A P RRELL HCYRM GS+HDAEDLVQET LRAW+SY  FEG+SSLRTWL+RIAT
Sbjct: 10  DFSQLAAPLRRELLVHCYRMLGSMHDAEDLVQETYLRAWRSYDGFEGRSSLRTWLYRIAT 69

Query: 90  NTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLE--XXXXXXXXXXXXSVIVGS 147
             CL A+E R RRPLP GL A G+DP    +   E PWLE              + IV +
Sbjct: 70  TVCLRAMENRGRRPLPVGLGAPGADPEERPIHDGETPWLEPLPDALLRREREDPAAIVSA 129

Query: 148 RESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLET 207
           R+SVRLAFVAALQHL PRQRAVL+LRDVLQW+A EVA+ +G +  AVNSLLQRARA L  
Sbjct: 130 RQSVRLAFVAALQHLPPRQRAVLILRDVLQWRAVEVADLLGGSPAAVNSLLQRARATLGH 189

Query: 208 AQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARD 267
             P  +D +  P +   ++LL RY+TAFEA DI  LV +F ++A+WEMPPY  WY+G RD
Sbjct: 190 LSP-REDRVTEPTTAAERELLDRYVTAFEAKDIAGLVRLFASDAVWEMPPYTSWYRGPRD 248

Query: 268 IITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRA-GETHVPFQLHVLDMVDGRVSHVT 326
           I   +  +C A  PG +RL+P  ANGQPA A Y+ A G T     L VL +    ++ +T
Sbjct: 249 IGRHLALRCLA-TPGPVRLVPTAANGQPALAGYVAAGGSTFALTNLQVLSVTSTAITRIT 307

Query: 327 AFLDGSLFPKFGLPASI 343
            F D  LF  FGLPAS+
Sbjct: 308 VFSDPRLFTAFGLPASV 324


>tr|A1SQK3|A1SQK3_NOCSJ Tax_Id=196162 RecName: Full=RNA polymerase
           sigma factor;[Nocardioides sp.]
          Length = 365

 Score =  310 bits (793), Expect = 2e-82
 Identities = 173/323 (53%), Positives = 212/323 (65%), Gaps = 13/323 (4%)

Query: 20  TAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSS 79
           TA      GD F    + Y+RELLAHCYRM+GSV +AEDLVQET LRAWK+   F+G+SS
Sbjct: 23  TAAARSELGD-FPTLTQRYQRELLAHCYRMSGSVQEAEDLVQETFLRAWKASADFQGRSS 81

Query: 80  LRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLEXXXXXXXXXX 139
           +RTWL+RIATN CL+ LEGR RRPLP GL    +     L E  E+ WLE          
Sbjct: 82  VRTWLYRIATNVCLTNLEGRPRRPLPAGLGTPDAMAGDALEENHEIAWLE-------PVP 134

Query: 140 XXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQ 199
             +V+V  R+S+RLAFVAALQHL  RQRAVL+LRDVL+W AAEVAEA+ TT+ AVNS LQ
Sbjct: 135 DAAVVVAERDSIRLAFVAALQHLPARQRAVLILRDVLRWSAAEVAEALDTTSAAVNSALQ 194

Query: 200 RARAQLETAQPSADDGLVAPD-SPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPY 258
           RA AQL  A     +  V PD +P  Q LL RY+ AF   D+D +V + T+EA+WEMPP+
Sbjct: 195 RAHAQL--AGRGLTEETVEPDLTPAQQQLLERYVDAFWRKDVDAIVSLLTSEAVWEMPPF 252

Query: 259 AGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMR-AGETHVPFQLHVLDM 317
             W+ G  +I  LI + CP     DM ++   ANGQPA  +YMR A     PFQL VL++
Sbjct: 253 TNWFVGPDNIGELIDKHCPGGW-NDMPMLRTSANGQPAFGLYMRMADGGFTPFQLQVLEL 311

Query: 318 VDGRVSHVTAFLDGSLFPKFGLP 340
              RV+HV AF D +LF KFGLP
Sbjct: 312 DGSRVAHVHAFFDTALFAKFGLP 334


>tr|C1RMY4|C1RMY4_9CELL Tax_Id=446466 SubName: Full=RNA polymerase,
           sigma subunit, ECF family; Flags: Fragment;[Cellulomonas
           flavigena DSM 20109]
          Length = 362

 Score =  300 bits (769), Expect = 1e-79
 Identities = 163/315 (51%), Positives = 200/315 (63%), Gaps = 9/315 (2%)

Query: 2   SALAGNSTQNSIANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQ 61
           SA A  S   S+A  T   A     A D+F     P RRE+LAHCYRMTGSVHDAED++Q
Sbjct: 10  SATASGSV--SVAPATGAAAPAGELAEDQFEQRLAPMRREILAHCYRMTGSVHDAEDMLQ 67

Query: 62  ETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLVE 121
           ET LRAW++   FE +SSLRTW+ RIATN CL+ LEGR+RRPLPTGL A  +DP     E
Sbjct: 68  ETYLRAWRAMRGFENRSSLRTWVFRIATNACLTHLEGRRRRPLPTGLGAPAADPRHEPRE 127

Query: 122 RAEVPWLE---XXXXXXXXXXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQW 178
               PWLE               +     R+SVRLAFVAALQHL+ +QRAVLLLRDVL W
Sbjct: 128 DHGTPWLEPLPDALVWAQPPVDPAETAVHRDSVRLAFVAALQHLTAQQRAVLLLRDVLAW 187

Query: 179 KAAEVAEAIGTTTVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAY 238
            AAEVA+A+  +  A NS LQRARA +   +   D   + P  P  Q+LL RY+ AFEAY
Sbjct: 188 SAAEVADALDLSVAAANSTLQRARAHMANVK---DVTPLEPTDPRHQELLARYVAAFEAY 244

Query: 239 DIDRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAA 298
           D+  +VE+   + +WEMPP+ GWY G + +  LI   CPA+ PGDMR++P  ANG PA A
Sbjct: 245 DVAAIVELLATDVVWEMPPFPGWYAGPQAVGELIGTWCPAQVPGDMRMVPTRANGLPAFA 304

Query: 299 MYMRAGE-THVPFQL 312
           +YMR  E  H  FQ+
Sbjct: 305 LYMRGEEGRHRAFQV 319


>tr|C7QBT1|C7QBT1_CATAD Tax_Id=479433 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Catenulispora
           acidiphila]
          Length = 355

 Score =  300 bits (767), Expect = 2e-79
 Identities = 170/332 (51%), Positives = 208/332 (62%), Gaps = 13/332 (3%)

Query: 14  ANFTAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHR 73
           A +T P A R+    DEF   A+PYRRELL HCYRM GSVHDAEDLVQET LRAW+ Y R
Sbjct: 16  AQWTDPAAPRD---DDEFVRRADPYRRELLVHCYRMLGSVHDAEDLVQETFLRAWRGYDR 72

Query: 74  FEGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPL--VERAEVPWLEXX 131
           FEG+SSLR WL+RIAT+ CL+ALE R RR LPTGL A   D   PL  V  +EV WL+  
Sbjct: 73  FEGRSSLRIWLYRIATSACLTALENRSRRVLPTGLGAPEKDAERPLLTVAGSEVQWLQ-- 130

Query: 132 XXXXXXXXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTT 191
                     + IV  R+SVRLAF+AALQHLS +QRAVL+LRDV+ W AAEVA+ + TTT
Sbjct: 131 PLPDALASDPAAIVAVRDSVRLAFIAALQHLSAKQRAVLILRDVMDWHAAEVADLLDTTT 190

Query: 192 VAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEA 251
           +AVNS L+RARAQLE A PS D+ L  PD P  +DLL +Y TAFE  D+  L+ +   + 
Sbjct: 191 IAVNSALRRARAQLEKAAPSHDE-LTEPDDPRRRDLLHQYTTAFENADVPGLLRLLRDDV 249

Query: 252 IWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYM--RAGETHVP 309
           + EMPP   W+ G   + T +             ++   ANGQ AAA Y+  R G  H  
Sbjct: 250 VLEMPPNLAWFDGRTAVGTFLGANVLGR--RAFTMVTTAANGQAAAAGYLAGRDGRRHA- 306

Query: 310 FQLHVLDMVDGRVSHVTAFLDGSLFPKFGLPA 341
             + VL      +SH+ +F D  LF  FGLPA
Sbjct: 307 HAIQVLTATSSGISHIVSFNDPGLFAAFGLPA 338


>tr|C2AMF4|C2AMF4_TSUPA Tax_Id=521096 SubName: Full=RNA polymerase,
           sigma subunit, ECF family;[Tsukamurella paurometabola
           DSM 20162]
          Length = 324

 Score =  296 bits (757), Expect = 3e-78
 Identities = 161/310 (51%), Positives = 200/310 (64%), Gaps = 8/310 (2%)

Query: 37  PYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSAL 96
           P R ELLAHCYRM+GS  DAEDLVQET LRAWK++HRFEG+SS+RTW++RIATN CL+A 
Sbjct: 14  PLRAELLAHCYRMSGSASDAEDLVQETYLRAWKAFHRFEGRSSVRTWMYRIATNVCLTA- 72

Query: 97  EGRQRRPLPTGLAASGSDPTAPLVERAEVPWLEXXXXXXXXXXXXSVIVGSRESVRLAFV 156
             + RR LP GL    +DP  P+    EV WL+            S+IV  RES+ LA V
Sbjct: 73  -SQTRRVLPVGLGGEPADPLEPVAPSTEVLWLQPLPDAALGDPGESIIV--RESIGLAMV 129

Query: 157 AALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLETAQPSADDGL 216
           AALQ L  +QRA L+LRDVL + AAE A A+ TT  + NS LQRARA +    P      
Sbjct: 130 AALQGLPAKQRAALILRDVLDFSAAETAAALETTVASANSALQRARASIGAGAPQEGRKA 189

Query: 217 VAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQQC 276
              D  E + +   +  AFE +DID +V +  A+A WEMPP  GWY+GA +I  L   QC
Sbjct: 190 AELDDRE-RAVWQEFCAAFERHDIDGVVRVLAADATWEMPPIPGWYRGAEEIGMLSRTQC 248

Query: 277 PAECPGDMRLIPLVANGQPAAAMYMRAGETHV--PFQLHVLDMVDGRVSHVTAFLD-GSL 333
           PA+  GD+R+IP V NG P+AAMY+R G + V  PFQL VL   DG ++HV+AFLD   L
Sbjct: 249 PAQAAGDLRMIPTVCNGLPSAAMYLRDGGSDVWRPFQLDVLTFTDGALTHVSAFLDPAEL 308

Query: 334 FPKFGLPASI 343
           F   GLPAS+
Sbjct: 309 FVLAGLPASL 318


>tr|C7PWF0|C7PWF0_CATAD Tax_Id=479433 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Catenulispora
           acidiphila]
          Length = 351

 Score =  295 bits (754), Expect = 7e-78
 Identities = 171/334 (51%), Positives = 209/334 (62%), Gaps = 15/334 (4%)

Query: 17  TAPTA-ERERPA----GDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSY 71
           T P A ER  PA     DEF    EPYRRELL HCYRM GSVHDAEDLVQET LRAW+ Y
Sbjct: 11  TPPAAVERAGPATPRDDDEFVRLVEPYRRELLVHCYRMLGSVHDAEDLVQETYLRAWRGY 70

Query: 72  HRFEGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPT--APLVERAEVPWLE 129
            RFEG+SSLR WL+RIAT+ CL+ALE R R+ LPTGL    ++     P     EV WL+
Sbjct: 71  DRFEGRSSLRIWLYRIATSACLTALEHRSRKVLPTGLGGPDAEANRPGPTPGTGEVEWLQ 130

Query: 130 XXXXXXXXXXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGT 189
                       + IV  R+SVRLAF+AALQHLS +QRAVL+LRDV+ W AAEVA+ + T
Sbjct: 131 --PLPDLPGNDPAAIVAVRDSVRLAFIAALQHLSAKQRAVLILRDVMDWHAAEVADLLDT 188

Query: 190 TTVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTA 249
           TT+AVNS L+RARAQLE A PS DD L  PD P    +L +Y TAFE  D+  LV +   
Sbjct: 189 TTIAVNSALRRARAQLEKAAPS-DDELTEPDDPRRLAMLEQYTTAFENADVPGLVRLLRD 247

Query: 250 EAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRA--GETH 307
           E + EMPP   W++G  ++   +  +     P    ++ + ANGQPAAA Y+    G  H
Sbjct: 248 EVVLEMPPNLFWFEGRGNVTRFLDTRVLGGRP--FAMLRISANGQPAAAGYLAGTDGRWH 305

Query: 308 VPFQLHVLDMVDGRVSHVTAFLDGSLFPKFGLPA 341
               +HVL M    +SH+ +F D SLF  FGLPA
Sbjct: 306 A-HAIHVLTMTVTGISHIVSFNDPSLFDGFGLPA 338


>tr|C4DFI6|C4DFI6_9ACTO Tax_Id=446470 RecName: Full=RNA polymerase
           sigma factor;[Stackebrandtia nassauensis DSM 44728]
          Length = 322

 Score =  290 bits (743), Expect = 1e-76
 Identities = 158/325 (48%), Positives = 208/325 (64%), Gaps = 14/325 (4%)

Query: 20  TAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSS 79
           TA RE    DEFA  AEP R ELL  CYRM GSVH+AED++Q+ LLRAW+++ RFE +SS
Sbjct: 3   TATRE----DEFARRAEPLRPELLGFCYRMLGSVHEAEDVLQDALLRAWRAFPRFEDRSS 58

Query: 80  LRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPL-VERAEVPWLEXXXXXXXXX 138
           LRTWL+RI TN CL ALE  +RRPLP+G   + +DP AP+  + ++VPWL+         
Sbjct: 59  LRTWLYRITTNACLRALERAKRRPLPSGWGDASADPEAPVPSQTSDVPWLQ------PFP 112

Query: 139 XXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLL 198
              + +V  RES+RLA VAALQ L PR+R VL+LRDVL+W+A EVAE + TT  AVNSLL
Sbjct: 113 DDPASVVEGRESMRLALVAALQLLPPRRRVVLILRDVLEWRAGEVAEFLDTTPAAVNSLL 172

Query: 199 QRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPY 258
           Q AR+QL  A P A    V P +   ++ + RY  AF   D+D L    +A+A+WEMPPY
Sbjct: 173 QHARSQLRRANPKAVRE-VGPLTARQREFVDRYAKAFAEADLDALTAALSADAVWEMPPY 231

Query: 259 AGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGETHVPFQLHVLDMV 318
             W+ G   ++  +  +      G  R + + ANGQPA A+Y+R G+    + +HVLD+ 
Sbjct: 232 PTWFAGRDHVVRFLATKLGD--GGGRRFVRVSANGQPALALYLRDGDGFAAYAVHVLDVG 289

Query: 319 DGRVSHVTAFLDGSLFPKFGLPASI 343
           +  V HV AF+D  LF  FGLP  I
Sbjct: 290 EAGVEHVVAFMDPGLFAGFGLPPRI 314


>tr|C1WR88|C1WR88_9ACTO Tax_Id=479435 RecName: Full=RNA polymerase
           sigma factor;[Kribbella flavida DSM 17836]
          Length = 314

 Score =  270 bits (691), Expect = 1e-70
 Identities = 155/316 (49%), Positives = 194/316 (61%), Gaps = 10/316 (3%)

Query: 30  EFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFE-GKSSLRTWLHRIA 88
           +F      YRRELLAHCYRM GS+HDAEDLVQET LRAW+SY  ++ G++SLRTWL+RIA
Sbjct: 4   DFVDRTGSYRRELLAHCYRMLGSIHDAEDLVQETYLRAWRSYDAYDPGRASLRTWLYRIA 63

Query: 89  TNTCLSALEGRQRRPLPTGLAASGSDPTAPL-VERAEVPWLEXXXXXXXXXXXXSVIVGS 147
           TN CL+AL+ R RR LP+ L + GSDP   L  +  EV WLE            + I  S
Sbjct: 64  TNACLTALDQRSRRALPSALGSPGSDPEGHLSADLPEVTWLEPWPDIATSDP--AAITES 121

Query: 148 RESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLET 207
           RES+RLA VAALQ+L  RQR +LLLRDVL W A+EV+E  G +  AV+S ++RARAQLE 
Sbjct: 122 RESLRLALVAALQYLPARQRGILLLRDVLGWPASEVSELTGLSVPAVHSAVRRARAQLER 181

Query: 208 AQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARD 267
             P+ DDG  A    E Q LL RY  AFE  DI+ L+ + T +A WEMPP   W+ G   
Sbjct: 182 VMPT-DDGPPALSDTEQQQLLNRYARAFETADIETLLRLLTVDATWEMPPVPDWFSGREA 240

Query: 268 IITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGETHVPFQLHVLDMVDGRVSHVTA 327
           I  LI  QC A   G  R++   ANGQPA A+Y+        + L VL +    ++    
Sbjct: 241 IGRLIVAQCGA-MNGGGRMVRTSANGQPAFALYVNGR----AYSLQVLTLTGAGIAKAND 295

Query: 328 FLDGSLFPKFGLPASI 343
           F D  +F  FGLP  +
Sbjct: 296 FHDLRVFAPFGLPLEL 311


>tr|C1WSW8|C1WSW8_9ACTO Tax_Id=479435 SubName: Full=RNA polymerase,
           sigma subunit, ECF family;[Kribbella flavida DSM 17836]
          Length = 314

 Score =  270 bits (690), Expect = 2e-70
 Identities = 153/316 (48%), Positives = 197/316 (62%), Gaps = 13/316 (4%)

Query: 29  DEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIA 88
           DEFA     YR  LLAHCYRM GS+HDAED VQET LRAWK    FEG+SS++TWL+RIA
Sbjct: 5   DEFA----QYRSGLLAHCYRMLGSLHDAEDAVQETYLRAWKGMAAFEGRSSVKTWLYRIA 60

Query: 89  TNTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLEXXXXXXXXXXXXSVIVGSR 148
           TN CLSAL+   RR +P+ L A G+DP     +  E  WLE            +++VG+R
Sbjct: 61  TNVCLSALQHSSRRVIPSALGAPGNDPDNLEAQALETSWLE----PWPDLLDPALVVGNR 116

Query: 149 ESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLETA 208
           +++RLA VAALQHL  RQRAVL+LR+VL W AAEVA+ + TTT AVNS LQRARA+L   
Sbjct: 117 QTLRLAMVAALQHLPARQRAVLILREVLAWPAAEVADLLDTTTAAVNSALQRARAELARL 176

Query: 209 QPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARDI 268
            P A++    PD P  + LL +Y  AFE  D+  L  + TA+  WEMPP   W+ G  D+
Sbjct: 177 SP-AEEQFSEPDEPVRRALLDQYAVAFEQGDLVALEGLLTADTRWEMPPIPTWFSGRDDV 235

Query: 269 ITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRA--GETHVPFQLHVLDMVDGRVSHVT 326
           + L+  + P    G   ++   ANGQPA A+Y+R   G  H  + + VL++    +S V 
Sbjct: 236 LRLLAAKLPPGA-GKRLMVETGANGQPAFAVYLRGRDGAFH-GYAIQVLELNKAGISGVL 293

Query: 327 AFLDGSLFPKFGLPAS 342
           AF    LFP FGLP +
Sbjct: 294 AFHRPDLFPLFGLPVT 309


>tr|C1WJC7|C1WJC7_9ACTO Tax_Id=479435 RecName: Full=RNA polymerase
           sigma factor;[Kribbella flavida DSM 17836]
          Length = 335

 Score =  267 bits (682), Expect = 2e-69
 Identities = 155/314 (49%), Positives = 191/314 (60%), Gaps = 4/314 (1%)

Query: 32  AVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIATNT 91
           A  AE YRREL AHCYRMTGSVHDAEDLVQET LRAW+    F+G+SSLRTWL+RIATN 
Sbjct: 20  ADRAEGYRRELFAHCYRMTGSVHDAEDLVQETFLRAWRGSAGFDGRSSLRTWLYRIATNA 79

Query: 92  CLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLE-XXXXXXXXXXXXSVIVGSRES 150
           CL+AL+ R+RR LP G  A  +DP  P      V W+E               IV  R+S
Sbjct: 80  CLTALDQRRRRFLPAGTGAPSNDPDEPPRPAESVAWVEPLPDALLRANETPESIVVERDS 139

Query: 151 VRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLETAQP 210
           VRLA VAALQ+L PRQRAVLLLR+VL W AAEVAE +G +  AV SLLQRAR ++   +P
Sbjct: 140 VRLALVAALQYLQPRQRAVLLLREVLAWPAAEVAEVMGISVAAVKSLLQRARGRIAELEP 199

Query: 211 SADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARDIIT 270
             +D L   D P+AQ+LL RYITAFE  D+  L  +   +A  E+PP   W+QG +  + 
Sbjct: 200 EPEDRLQL-DDPQAQELLRRYITAFETADVAELGRLLCEDASIEVPPSTTWFQGIQVCLP 258

Query: 271 LIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGE-THVPFQLHVLDMVDGRVSHVTAFL 329
            + +    E  G  RL+    NGQPAAA Y R  +  +    + V  M    +S V  F 
Sbjct: 259 YLGRHV-LEDVGTWRLVGTEVNGQPAAAAYHREPDGRYTAAVVGVFTMTARGISRVVVFP 317

Query: 330 DGSLFPKFGLPASI 343
           D  L    GLPA++
Sbjct: 318 DAGLTAAAGLPAAL 331


>tr|C7Q641|C7Q641_CATAD Tax_Id=479433 RecName: Full=RNA polymerase
           sigma factor; Flags: Precursor;[Catenulispora
           acidiphila]
          Length = 363

 Score =  263 bits (672), Expect = 2e-68
 Identities = 150/332 (45%), Positives = 203/332 (61%), Gaps = 13/332 (3%)

Query: 19  PTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKS 78
           PTA  E    D+F   A+P+R E+LAHCYRM GS+HDAEDLVQET LRAW+SY  FEG++
Sbjct: 26  PTAGSEMRVEDDFVRLADPFRPEILAHCYRMLGSIHDAEDLVQETYLRAWRSYEGFEGRA 85

Query: 79  SLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPL-VERAEVPWLEXXXXXXXX 137
           SLRTWL+RIATN CL+ALE R RRPLP G+    +DP   L     E+ WL+        
Sbjct: 86  SLRTWLYRIATNACLTALEHRARRPLPAGIGTPHTDPEGDLSAIPPEITWLQPFPDVLLD 145

Query: 138 XXXXSV-------IVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTT 190
               +        +V +R  +RLA VAALQ+L PRQRAVL+LRDVL W++AEVA  +  T
Sbjct: 146 TGVSAAAGADPASVVAARSGLRLALVAALQYLPPRQRAVLILRDVLGWRSAEVAALLDLT 205

Query: 191 TVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAE 250
             AVNSLL+RARA+L    P  +D +  P   E +++L R+  AF   D+D L+++ T +
Sbjct: 206 VAAVNSLLKRARARLAEVAPDVED-VAEPTQAEQREILDRWAKAFVEADVDTLMKLLTED 264

Query: 251 AIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMR-LIPLVANGQPAAAMYMRAGETHVP 309
           A++EMPP   W++GA  +  L+  +      G  R +IP+ ANGQPA A+Y    +  + 
Sbjct: 265 AVYEMPPQPMWFRGAPFLRRLLTFRLGMH--GKYRKMIPIRANGQPAFAVYSGDDDRLLA 322

Query: 310 FQ-LHVLDMVDGRVSHVTAFLDGSLFPKFGLP 340
            + + VL +  G+V+ VT F    L    G P
Sbjct: 323 AESVQVLTLRGGKVARVTTFRTPGLVAVAGFP 354


>tr|C4RD83|C4RD83_9ACTO Tax_Id=219305 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Micromonospora sp. ATCC
           39149]
          Length = 337

 Score =  260 bits (665), Expect = 1e-67
 Identities = 159/337 (47%), Positives = 201/337 (59%), Gaps = 20/337 (5%)

Query: 17  TAPTAER--ERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRF 74
           TAPT  R  ERP  +      E +R EL  +CYRM GS  DAED VQETLLRAW+    F
Sbjct: 10  TAPTPVRPQERPLPEH---RLEEHRVELTGYCYRMLGSAFDAEDAVQETLLRAWRGLGGF 66

Query: 75  EGKSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVP-----WL- 128
           +G+SS+RTW++RIATN CL  L GR RR +PT L     +P+AP++     P     W+ 
Sbjct: 67  DGRSSVRTWVYRIATNVCLDLLRGRSRRAVPTDL----GEPSAPVLAALGEPRPAGEWVG 122

Query: 129 -EXXXXXXXXXXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAI 187
                         + +  +R+SVRLAFVAALQHL PRQRAVL+LRDVL+W+A EVA  +
Sbjct: 123 PAHDARVLPAGGDPAEVAVTRDSVRLAFVAALQHLPPRQRAVLVLRDVLRWRADEVAGLL 182

Query: 188 GTTTVAVNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIF 247
            T+  AVNS LQRARA L      AD    A D+ E ++LL RY+ AFE YDID LV + 
Sbjct: 183 DTSVAAVNSALQRARATLAARGVEADPPAAALDA-EHRELLDRYVRAFERYDIDALVALL 241

Query: 248 TAEAIWEMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMR-AGET 306
            A+A+  MPPY  W +GA DI   +     A C G  RL+P+ ANG P  A Y R     
Sbjct: 242 RADAVQSMPPYRMWLRGAGDIGRWMTGP-GAGCQGS-RLVPVAANGGPGFAQYRRDPAGG 299

Query: 307 HVPFQLHVLDMVDGRVSHVTAFLDGSLFPKFGLPASI 343
           H PF + ++    GR++ +  FLD  LFP FGLPA +
Sbjct: 300 HRPFSIQLVGCSGGRIARLHFFLDPGLFPLFGLPARL 336


>tr|C7PXI3|C7PXI3_CATAD Tax_Id=479433 RecName: Full=RNA polymerase
           sigma factor;[Catenulispora acidiphila]
          Length = 360

 Score =  256 bits (655), Expect = 2e-66
 Identities = 148/317 (46%), Positives = 200/317 (63%), Gaps = 12/317 (3%)

Query: 31  FAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIATN 90
           FA   EPYRREL AHCYRM GSV DAEDLVQET LRAW+ Y +FEG+SS+RTWL++IATN
Sbjct: 7   FATETEPYRRELFAHCYRMLGSVLDAEDLVQETYLRAWRHYDKFEGRSSVRTWLYQIATN 66

Query: 91  TCLSALEGR---QRRPLPTGLAASGSDPTAPLVE-RAEVPWLE--XXXXXXXXXXXXSVI 144
            CL+AL  R   +RR LP+GL     +  A ++E    V W++              + +
Sbjct: 67  GCLTALAKRRDAERRVLPSGLGPPEDNTEAAVLEPDRRVRWVQPVPDALIAPESGDPAAV 126

Query: 145 VGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQ 204
           V +RE VRLA VA+LQHL  RQRAVL+LR+VL   A+EVAE + T+T +V S LQRARA 
Sbjct: 127 VAAREGVRLALVASLQHLPARQRAVLVLREVLALPASEVAEILQTSTASVKSALQRARAT 186

Query: 205 LETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQG 264
           L    P A+D +  P +P+A+ +L RYI AFE  D D L ++   +A  E PP   W+QG
Sbjct: 187 LREQAP-AEDRISEPKAPQARAVLERYIKAFENADADALQQLLVQDATIEAPPMRAWFQG 245

Query: 265 ARDIITLIHQQCPAECPGDMRLIPLV--ANGQPAAAMYMRAGE-THVPFQLHVLDMVDGR 321
            +  + ++        PG  R++P+   ANG PAAA Y+R  +  + P+ + VLD+V  R
Sbjct: 246 VQKCVPVLRHVMGE--PGQWRMLPITGGANGSPAAAGYLRDEDGRYRPYGVVVLDVVGDR 303

Query: 322 VSHVTAFLDGSLFPKFG 338
           ++ +T+F D +L P FG
Sbjct: 304 IARITSFGDPALLPVFG 320


>tr|C0U5Z7|C0U5Z7_9ACTO Tax_Id=526225 SubName: Full=RNA polymerase,
           sigma subunit, ECF family;[Geodermatophilus obscurus DSM
           43160]
          Length = 324

 Score =  252 bits (644), Expect = 4e-65
 Identities = 148/319 (46%), Positives = 191/319 (59%), Gaps = 12/319 (3%)

Query: 29  DEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIA 88
           DE       +RREL  +CYRM GS  DA+D VQET++RAW+    FEG+S+LR+WL+RIA
Sbjct: 7   DELDPRLLEHRRELTGYCYRMLGSAFDADDAVQETMVRAWRGLGDFEGRSALRSWLYRIA 66

Query: 89  TNTCLSALEGRQRRPLPTGLAASGSDP--TAPLVERAEVPWLEXXXXXXXXXXXXSVI-- 144
           TN CL  L GRQRR LP  L+ S   P   +    R    W+E                 
Sbjct: 67  TNVCLDQLSGRQRRALPMDLSGSPWQPVEASLAARRPATAWVEPVLDRQVVAQDADPAEQ 126

Query: 145 VGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQ 204
              RES+RLAFV+ALQHL PRQRAVLLLR+VL+W+A EVA+ + TT  +VNS LQRARA 
Sbjct: 127 AVQRESIRLAFVSALQHLPPRQRAVLLLREVLRWRADEVAQLLDTTVASVNSALQRARAT 186

Query: 205 LETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQG 264
           +      A+     P     + LL RY+ AFE YD++ LV +   +A   MPP   W +G
Sbjct: 187 MAVVGGEAE---TEPLDDVHRALLERYVDAFERYDVEGLVSLLHEDATQHMPPLEMWLRG 243

Query: 265 ARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYM-RAGETHVPFQLHVLDMVDGRVS 323
             DI T +     A+C G  R++P +ANG PA A Y  RAG  H P+ LHVL++ DGRV+
Sbjct: 244 RADIGTWMLGP-GAKCRGS-RVLPTIANGAPAFAQYRPRAGGGHEPWALHVLEVRDGRVA 301

Query: 324 HVTAF--LDGSLFPKFGLP 340
           H+++F  LD  LF + GLP
Sbjct: 302 HISSFLDLDNDLFRRLGLP 320


>tr|A6WE33|A6WE33_KINRD Tax_Id=266940 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Kineococcus
           radiotolerans]
          Length = 352

 Score =  251 bits (642), Expect = 7e-65
 Identities = 147/309 (47%), Positives = 184/309 (59%), Gaps = 11/309 (3%)

Query: 38  YRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSALE 97
           +R EL  +CYRM GS  DAED VQ+T++RAWK    FEG+S LR+WL+RIATN CL+ +E
Sbjct: 44  HRAELRGYCYRMLGSAFDAEDAVQDTMVRAWKGIDGFEGRSGLRSWLYRIATNVCLTMIE 103

Query: 98  GRQRRPLPTGLAASGSDPTAPLV--ERAEVPWLE--XXXXXXXXXXXXSVIVGSRESVRL 153
            R +R  P  L+AS  +P    +   R+E  WLE              + I  +RESVRL
Sbjct: 104 SRGKRARPMDLSASAWEPVEASLAHRRSEDTWLEPMVDDRVLPQAGDPADIAVARESVRL 163

Query: 154 AFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLETAQPSAD 213
           AFVAALQHL PRQRAVL+LRDVL+W+A EVA  + TTT +VNS LQRARA L   +P  D
Sbjct: 164 AFVAALQHLPPRQRAVLILRDVLRWRAEEVATLLETTTASVNSALQRARATL-AERPDVD 222

Query: 214 DGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARDIITLIH 273
                 DS  A  LL  Y+ AFEAYDID  V++  AE    MPP+  W QGA DI   + 
Sbjct: 223 RAQPLDDSHRA--LLEEYVRAFEAYDIDAFVQLLAAEVTQNMPPFELWLQGADDIAAWM- 279

Query: 274 QQCPAECPGDMRLIPLVANGQPAAAMYMRAGETH--VPFQLHVLDMVDGRVSHVTAFLDG 331
              P       RL+P+  NG  A A Y   G     VPF +  L++  GR+  +T+FLD 
Sbjct: 280 -LGPGHLCRGSRLVPVTVNGSAAYAHYKPVGAQGELVPFAIQALELAGGRIVRITSFLDT 338

Query: 332 SLFPKFGLP 340
            LF  FG+P
Sbjct: 339 RLFDLFGIP 347


>tr|B4VAP2|B4VAP2_9ACTO Tax_Id=465541 SubName: Full=RNA polymerase
           factor sigma-70;[Streptomyces sp. Mg1]
          Length = 334

 Score =  251 bits (640), Expect = 1e-64
 Identities = 149/313 (47%), Positives = 187/313 (59%), Gaps = 8/313 (2%)

Query: 36  EPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSA 95
           E YR EL  +CYRM GS  DAED VQ+T +RAW+++ RFEG+SSLR+WL+RIATN CL  
Sbjct: 15  ERYRVELTGYCYRMLGSSFDAEDAVQDTYVRAWRAFDRFEGRSSLRSWLYRIATNVCLDL 74

Query: 96  LEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLE--XXXXXXXXXXXXSVIVGSRESVRL 153
           L    +R  P    A     +A L ER EV WLE              + +  +RESVRL
Sbjct: 75  LSAGNKRARPMDFGAPQHQASAVLNERPEVTWLEPVPDGRVLQQTADPAEMALARESVRL 134

Query: 154 AFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLETAQPSAD 213
           AFVAALQHL  +QRAVL+LR+VL WKA EVA  + TT  +VNS LQRARA L +A+   +
Sbjct: 135 AFVAALQHLPAKQRAVLILREVLAWKADEVATLLDTTVASVNSALQRARATL-SARRIRE 193

Query: 214 DGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARDIITLIH 273
                P   E   LL RY++AFEAYDI RL  +   +A+  MPP+  W +G  DI    H
Sbjct: 194 GEAADPLDAEQVKLLERYLSAFEAYDISRLTTLLHEDAVLSMPPFDLWLRGREDIAAW-H 252

Query: 274 QQCPAECPGDMRLIPLVANGQPAAAMYMRA--GETHVPFQLHVLDMVDGRVSHVTAFLD- 330
               + C G  RL+P  ANG PA A Y  A  G  H P+ L VL++ DG++  + AFLD 
Sbjct: 253 LNQGSGCRGS-RLLPTTANGLPAFAQYRPAASGAGHTPWALQVLEISDGKIVGLNAFLDT 311

Query: 331 GSLFPKFGLPASI 343
              FP FGLP  +
Sbjct: 312 DRWFPLFGLPEQL 324


>tr|B5H528|B5H528_STRPR Tax_Id=457429 SubName: Full=RNA polymerase
           factor sigma-70;[Streptomyces pristinaespiralis ATCC
           25486]
          Length = 337

 Score =  249 bits (637), Expect = 3e-64
 Identities = 146/313 (46%), Positives = 188/313 (60%), Gaps = 8/313 (2%)

Query: 36  EPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSA 95
           E +RREL  +CYRM GS  +AED VQ+T++RAW+S+ +FEG+SSLR+WL+RIATN CL  
Sbjct: 15  EQHRRELTGYCYRMLGSSFEAEDAVQDTMVRAWRSFDKFEGRSSLRSWLYRIATNVCLDM 74

Query: 96  LEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLE--XXXXXXXXXXXXSVIVGSRESVRL 153
           L    RR  P  L+       A L  R E+ WLE              +     RE++RL
Sbjct: 75  LNAGNRRARPMDLSGPTPVAQAQLNARPEITWLEPVPDGRVLPSVVDPAETAVERETIRL 134

Query: 154 AFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLETAQPSAD 213
           AFVAALQHL P+QRAVL+LR+VL WKA+EVAE +GTT  +VNS LQRARA L    P++ 
Sbjct: 135 AFVAALQHLPPKQRAVLILREVLAWKASEVAELLGTTVASVNSALQRARATLSEQSPASS 194

Query: 214 DGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARDIITLIH 273
           D    P   E Q LL RY+ AFE YD+  L  +   +A   MPPY  W +G  DI+  + 
Sbjct: 195 DA-ADPLDEEQQQLLERYVAAFEGYDMKALTALLHEDATMSMPPYDLWLRGHDDIVGWM- 252

Query: 274 QQCPAECPGDMRLIPLVANGQPAAAMYMRA--GETHVPFQLHVLDMVDGRVSHVTAFLDG 331
                 C G  RL+P VANG PA A Y  +  GE + P+ L VL++ +G+V  +  FLD 
Sbjct: 253 LGVGDVCRGS-RLVPTVANGAPAFAHYHPSADGEGYEPWALIVLELSEGKVGGMDFFLDT 311

Query: 332 S-LFPKFGLPASI 343
              FP F LPA +
Sbjct: 312 KRWFPLFDLPARL 324


>tr|B5GSZ9|B5GSZ9_STRCL Tax_Id=443255 SubName: Full=RNA polymerase
           factor sigma-70;[Streptomyces clavuligerus ATCC 27064]
          Length = 333

 Score =  249 bits (637), Expect = 3e-64
 Identities = 146/310 (47%), Positives = 186/310 (60%), Gaps = 8/310 (2%)

Query: 36  EPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIATNTCLSA 95
           E YRREL  +CYRM GS  +AED VQ+TL+RAW+S  +FEG+SSLR+WL+RIATN CL  
Sbjct: 18  EKYRRELTGYCYRMLGSSFEAEDAVQDTLVRAWRSREKFEGRSSLRSWLYRIATNVCLDM 77

Query: 96  LEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLEXXXXXXXXXXXXSVI--VGSRESVRL 153
           L    RR  P  L+       A L  R E  WLE                    RES+RL
Sbjct: 78  LNAGSRRARPMDLSGPTPVAQAQLRTRPEETWLEPMPDGRVLPPVADPAERAVERESIRL 137

Query: 154 AFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLETAQPSAD 213
           AFVAALQHL P+QRAVL+LR+VL WKAAEVAE + T+  +VNS LQRARA L  + P+  
Sbjct: 138 AFVAALQHLPPKQRAVLILREVLAWKAAEVAELLDTSVASVNSALQRARATLAESSPAPS 197

Query: 214 DGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARDIITLIH 273
           D    P   E + LL RY+ AFE YD++ L ++   +A   MPPY  W +G  DI+  + 
Sbjct: 198 DP-ADPLDEEQRKLLERYVAAFEGYDMEALKQVLHDDATLSMPPYDLWLRGHDDIVGWM- 255

Query: 274 QQCPAECPGDMRLIPLVANGQPAAAMYMRAGET--HVPFQLHVLDMVDGRVSHVTAFLD- 330
               + C G  RLIP  ANG PA A Y  A +   H P+ L V+D+ +G+++ + +FLD 
Sbjct: 256 LGVGSVCRGS-RLIPTAANGMPAFAHYHLAEDVNGHTPWALMVMDIREGKIAGINSFLDT 314

Query: 331 GSLFPKFGLP 340
              FP FGLP
Sbjct: 315 ARWFPLFGLP 324


>tr|B5I671|B5I671_9ACTO Tax_Id=463191 RecName: Full=RNA polymerase
           sigma factor;[Streptomyces sviceus ATCC 29083]
          Length = 333

 Score =  248 bits (632), Expect = 1e-63
 Identities = 141/321 (43%), Positives = 191/321 (59%), Gaps = 9/321 (2%)

Query: 29  DEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIA 88
           DEF   A+PY++ELLAHCYRM GS  DAEDLVQETL+RAW+ Y +F+ +SSLRTWL+RIA
Sbjct: 10  DEFTRLADPYQQELLAHCYRMLGSFQDAEDLVQETLIRAWRGYDKFDERSSLRTWLYRIA 69

Query: 89  TNTCLSALEGRQRRPLPTGLAASGSDP-TAPLVERAEVPWLE--XXXXXXXXXXXXSVIV 145
           TN CL+AL    RR LP+GL A+   P TA L     +PWLE              + I 
Sbjct: 70  TNACLTALRSSHRRVLPSGLGAATESPETADLSRADSLPWLEPMPTHRPGDPQDDPAGIA 129

Query: 146 GSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQL 205
             R+S RLA +AA Q L  RQRAVL+L DV+ ++ AE A+ +G T  A  SLLQRAR  L
Sbjct: 130 ALRDSTRLALIAAFQRLPARQRAVLILVDVVAFRPAEAADFLGITVTAARSLLQRARETL 189

Query: 206 ETAQPSADD--GLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQ 263
               P  ++     A D    + ++ +Y+ AFE  D   L E+  ++  +EMPP   W+ 
Sbjct: 190 AQDVPDEEEMRSGSAADMALDEKVVRQYLRAFETSDTAALAELLRSDIEYEMPPIPTWFL 249

Query: 264 GARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGE-THVPFQLHVLDMVDGRV 322
           G   ++  + ++  A+     R +   ANG PA A Y  A + + VP  +HVL++ DG +
Sbjct: 250 GRAAVVDHLRRRAFAQ---PHRSLATSANGCPAVATYSLAPDGSFVPHGIHVLEIRDGLI 306

Query: 323 SHVTAFLDGSLFPKFGLPASI 343
           + +  FLDG LFP FGLP S+
Sbjct: 307 ARIVVFLDGGLFPSFGLPTSL 327


>tr|C8X9W7|C8X9W7_NAKMY Tax_Id=479431 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Nakamurella
           multipartita]
          Length = 334

 Score =  246 bits (628), Expect = 3e-63
 Identities = 146/324 (45%), Positives = 193/324 (59%), Gaps = 11/324 (3%)

Query: 26  PAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLH 85
           P   E     E +RREL  +CYRM G+  + +D VQ+T++RAW++  +F+G+SSLRTWL+
Sbjct: 16  PGRAELERRLEDHRRELGGYCYRMLGAAFETDDAVQDTMVRAWRALDKFDGRSSLRTWLY 75

Query: 86  RIATNTCLSALEGRQRRPLPTGLAASGSDPTAPLV--ERAEVPWLE--XXXXXXXXXXXX 141
           RIATN CL  L  R RR LP     + S P A  +     E  W++              
Sbjct: 76  RIATNVCLDLLSSRNRRALPMDFGPA-SPPVAESLGQPHPEATWIQPMPDGEVLTGTADP 134

Query: 142 SVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRA 201
           + +   ++SVRLAF+AALQHL PRQRAVL+LR+VL+W AAEVA+ + +T  +VNS LQRA
Sbjct: 135 ADLAVQKDSVRLAFIAALQHLPPRQRAVLILREVLRWSAAEVADLLDSTVASVNSALQRA 194

Query: 202 RAQLETAQPSADDGLVAPDSPEAQ-DLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAG 260
           RA L    P+A  G  A    EAQ  LL  Y+ AF +YDID LV +   +A   MPP+A 
Sbjct: 195 RATLAAVDPAA--GTHADPMDEAQKGLLADYVKAFTSYDIDALVLLLRQDATASMPPFAL 252

Query: 261 WYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGE-THVPFQLHVLDMVD 319
           W  G RD I   H    A C    +LI L  NG PA A Y  A + TH PF + VLD+  
Sbjct: 253 WLSG-RDDIAAWHLGPGAAC-RQSKLIALEVNGSPAFAAYKLAADGTHRPFSIQVLDLDG 310

Query: 320 GRVSHVTAFLDGSLFPKFGLPASI 343
            +++ +T FL+ SLF +FGLPAS+
Sbjct: 311 DKIARITYFLETSLFARFGLPASL 334


>tr|C4DQJ1|C4DQJ1_9ACTO Tax_Id=446470 RecName: Full=RNA polymerase
           sigma factor;[Stackebrandtia nassauensis DSM 44728]
          Length = 332

 Score =  246 bits (628), Expect = 3e-63
 Identities = 152/329 (46%), Positives = 191/329 (58%), Gaps = 9/329 (2%)

Query: 17  TAPTAERERPAGDEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEG 76
           T   A  E   GD  A   EPYRRELLAHCYRM GS  +AEDLVQET LRAW+S   FEG
Sbjct: 2   TTDPARAESGPGDA-AHRLEPYRRELLAHCYRMVGSADEAEDLVQETFLRAWRSRRDFEG 60

Query: 77  KSSLRTWLHRIATNTCLSALEGRQRRPLPTGLAASGSDPTA-PLVERAEVPWLE--XXXX 133
           +SS RTWL+RIATN CL+ALE R RR LP+GL A   D T  P      + WL+      
Sbjct: 61  RSSWRTWLYRIATNVCLTALEQRGRRALPSGLGAPAEDATTPPRPAEPGIAWLQPIPDAQ 120

Query: 134 XXXXXXXXSVIVGSRESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVA 193
                   + +V +RE +RLA +A+LQ+L  RQRAVLLLR+VL + AAEVA  + TTT A
Sbjct: 121 VAPRSADPATVVTAREGLRLALIASLQYLPARQRAVLLLREVLAFPAAEVASMLDTTTAA 180

Query: 194 VNSLLQRARAQLETAQPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIW 253
           V S LQRARA+L+   P  +  L  P  P  ++LL +YIT FE  D   L     A+A  
Sbjct: 181 VKSALQRARARLDDVDPKGEP-LREPTEPRTRELLEQYITGFENADTAALERALRADAAI 239

Query: 254 EMPPYAGWYQGARDIITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRAGE-THVPFQL 312
           E+     W+ G    +  + +     C GD R++P  ANGQPA A Y+R+ +  H  F +
Sbjct: 240 ELVGTRTWFSGRATCLGYL-RTVIGRC-GDWRMLPTAANGQPAVAAYVRSADGIHRAFGI 297

Query: 313 HVLDMVDGRVSHVTAFLDGS-LFPKFGLP 340
            VL +    +SHV  F  G+ L   FGLP
Sbjct: 298 GVLTVSQEGISHVHVFGGGADLTATFGLP 326


>tr|C7QCL6|C7QCL6_CATAD Tax_Id=479433 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Catenulispora
           acidiphila]
          Length = 333

 Score =  246 bits (627), Expect = 4e-63
 Identities = 141/318 (44%), Positives = 186/318 (58%), Gaps = 6/318 (1%)

Query: 29  DEFAVHAEPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFEGKSSLRTWLHRIA 88
           D  A   EP+RREL A+CYRM GS  +AED VQETLLRAW  +  F+G+S LRTWL+RIA
Sbjct: 12  DTVADQLEPFRRELTAYCYRMLGSAFEAEDAVQETLLRAWSKFEGFQGRSQLRTWLYRIA 71

Query: 89  TNTCLSALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLEXXXXXXXXXXXXSVIVGSR 148
           TN CL      QRR  P  L + GS     L +  E  W+             + +   R
Sbjct: 72  TNVCLDMAPAPQRRARPMDLFSPGSATAPNLAQLEENVWVGPIPDERVLAGDPAEVAVGR 131

Query: 149 ESVRLAFVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLETA 208
           ES+RLAF+AALQ L+PRQRAVL+LR+VL W AAE AE + ++  +VNS LQRARA L   
Sbjct: 132 ESIRLAFIAALQKLAPRQRAVLILREVLAWSAAETAELLDSSVASVNSALQRARATL-AE 190

Query: 209 QPSADDGLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARDI 268
             SA      P   E ++ L +Y+ AFEA+DID L  +  A+    MPP+  W QGA + 
Sbjct: 191 DGSASGETAKPLDDEQREFLAKYVKAFEAFDIDGLTALLRADVSLNMPPFQLWLQGAEE- 249

Query: 269 ITLIHQQCPAECPGDMRLIPLVANGQPAAAMYMRA--GETHVPFQLHVLDMVDGRVSHVT 326
           +          C G  RL+P+ ANG PA A Y  A  G+   P+ + VL++ DGR++ + 
Sbjct: 250 LRAWWNGAGGGCRGS-RLLPIEANGMPAFAQYRVAEDGDGWTPWAIMVLEIRDGRLAGIG 308

Query: 327 AFLDGS-LFPKFGLPASI 343
           ++LD   LFP F +PA +
Sbjct: 309 SYLDTERLFPLFDVPARL 326


>tr|C7Q586|C7Q586_CATAD Tax_Id=479433 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Catenulispora
           acidiphila]
          Length = 301

 Score =  241 bits (615), Expect = 9e-62
 Identities = 145/307 (47%), Positives = 182/307 (59%), Gaps = 12/307 (3%)

Query: 36  EPYRRELLAHCYRMTGSVHDAEDLVQETLLRAWKSYHRFE-GKSSLRTWLHRIATNTCLS 94
           E +R EL A+CYRM GSVHDAED VQETLLRAWK+  R++  K+S+RTWL+RIATN CL+
Sbjct: 4   EAHRAELTAYCYRMLGSVHDAEDQVQETLLRAWKARDRYDPAKASVRTWLYRIATNVCLT 63

Query: 95  ALEGRQRRPLPTGLAASGSDPTAPLVERAEVPWLEXXXXXXXXXXXXSVIVGSRESVRLA 154
           AL  R RRPLP+GL A   D  APL    +VPWLE                 +R  +RLA
Sbjct: 64  ALASRGRRPLPSGLGAPSQDTEAPLRPALDVPWLEPFPDARFD-------ADARADLRLA 116

Query: 155 FVAALQHLSPRQRAVLLLRDVLQWKAAEVAEAIGTTTVAVNSLLQRARAQLETAQPSADD 214
           +VAA+Q L  RQRA L+LRDVL + AAEVAE +GTT  AVNS LQRAR  ++    +A  
Sbjct: 117 WVAAVQELPARQRAALVLRDVLDFSAAEVAEQLGTTVAAVNSALQRARVTVDGLGEAA-- 174

Query: 215 GLVAPDSPEAQDLLTRYITAFEAYDIDRLVEIFTAEAIWEMPPYAGWYQGARDIITLIHQ 274
            +     P+   ++ RYI AFEA D+  LV++   + + EMPP   WY+G R+   L  +
Sbjct: 175 AVRETPDPDRHAVIERYIHAFEAADVPALVKLLADDVVMEMPPVPLWYRG-REHYGLFME 233

Query: 275 QCPAECPGDMRLIPLVANGQPAAAMYM-RAGETHVPFQLHVLDMVDGRVSHVTAFLDGSL 333
           +         R+IP  ANGQPA A Y   A   H    L V  +V G V+    F D  L
Sbjct: 234 RVFRLNGTGWRMIPTSANGQPALAAYAPNADGGHRRHTLQVFTVVGGLVTANVVFADTDL 293

Query: 334 FPKFGLP 340
           F  FGLP
Sbjct: 294 FDAFGLP 300


  Database: Amellifera_nr
    Posted date:  Feb 5, 2010  5:10 AM
  Number of letters in database: 3,846,993,858
  Number of sequences in database:  11,275,203
  
Lambda     K      H
   0.320    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11275203
Number of Hits to DB: 2,498,572,263
Number of extensions: 98145530
Number of successful extensions: 238347
Number of sequences better than 10.0: 5672
Number of HSP's gapped: 237713
Number of HSP's successfully gapped: 5809
Length of query: 343
Length of database: 3,846,993,858
Length adjustment: 138
Effective length of query: 205
Effective length of database: 2,291,015,844
Effective search space: 469658248020
Effective search space used: 469658248020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 81 (35.8 bits)