BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_0766 (187 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|A0PNM4|SIGK_MYCUA Tax_Id=362242 (sigK)RecName: Full=RNA polym... 372 e-102 tr|B2HQQ6|B2HQQ6_MYCMM Tax_Id=216594 (sigK)SubName: Full=Alterna... 372 e-102 sp|O53730|SIGK_MYCTU Tax_Id=1773 (sigK)RecName: Full=RNA polymer... 300 5e-80 sp|A5TZH1|SIGK_MYCTA Tax_Id=419947 (sigK)RecName: Full=RNA polym... 300 5e-80 sp|A1KFR7|SIGK_MYCBP Tax_Id=410289 (sigK)RecName: Full=RNA polym... 300 5e-80 sp|Q7U1Z6|SIGK_MYCBO Tax_Id=1765 (sigK)RecName: Full=RNA polymer... 300 5e-80 tr|C6DT23|C6DT23_MYCTK Tax_Id=478434 SubName: Full=Alternative R... 300 5e-80 tr|C1AKC1|C1AKC1_MYCBT Tax_Id=561275 (sigK)SubName: Full=RNA pol... 300 5e-80 tr|A5WJF4|A5WJF4_MYCTF Tax_Id=336982 SubName: Full=Alternative R... 300 5e-80 tr|A4KED3|A4KED3_MYCTU Tax_Id=395095 SubName: Full=Alternative R... 300 5e-80 tr|A2VFD1|A2VFD1_MYCTU Tax_Id=348776 SubName: Full=Alternative R... 300 5e-80 tr|A8CVK6|A8CVK6_9MYCO Tax_Id=78331 (sigK)SubName: Full=SigK;[My... 298 1e-79 tr|A4T702|A4T702_MYCGI Tax_Id=350054 SubName: Full=RNA polymeras... 258 2e-67 sp|A3Q5U0|SIGK_MYCSJ Tax_Id=164757 (sigK)RecName: Full=RNA polym... 246 7e-64 sp|A1TEV0|SIGK_MYCVP Tax_Id=350058 (sigK)RecName: Full=RNA polym... 245 2e-63 sp|Q1B3Q8|SIGK_MYCSS Tax_Id=164756 (sigK)RecName: Full=RNA polym... 244 4e-63 sp|A1ULE1|SIGK_MYCSK Tax_Id=189918 (sigK)RecName: Full=RNA polym... 244 4e-63 tr|C1B2B2|C1B2B2_RHOOB Tax_Id=632772 (sigK)SubName: Full=RNA pol... 206 1e-51 tr|Q0SDL9|Q0SDL9_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,... 203 6e-51 tr|C0ZW99|C0ZW99_RHOE4 Tax_Id=234621 (sigK)SubName: Full=RNA pol... 200 7e-50 tr|C3JGV8|C3JGV8_RHOER Tax_Id=596309 SubName: Full=RNA polymeras... 200 7e-50 tr|D0LAC0|D0LAC0_GORB4 Tax_Id=526226 SubName: Full=RNA polymeras... 198 2e-49 tr|Q0S3B7|Q0S3B7_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,... 194 4e-48 tr|C1B078|C1B078_RHOOB Tax_Id=632772 SubName: Full=RNA polymeras... 191 3e-47 tr|A1R871|A1R871_ARTAT Tax_Id=290340 SubName: Full=Putative RNA ... 191 4e-47 tr|C1YVR6|C1YVR6_NOCDA Tax_Id=446468 SubName: Full=RNA polymeras... 189 1e-46 tr|B8HBN8|B8HBN8_ARTCA Tax_Id=452863 SubName: Full=RNA polymeras... 188 3e-46 tr|A0JYJ6|A0JYJ6_ARTS2 Tax_Id=290399 SubName: Full=RNA polymeras... 188 3e-46 tr|Q5Z1F7|Q5Z1F7_NOCFA Tax_Id=37329 SubName: Full=Putative sigma... 187 6e-46 tr|A9WPR0|A9WPR0_RENSM Tax_Id=288705 SubName: Full=RNA polymeras... 186 8e-46 tr|C1WPD4|C1WPD4_9ACTO Tax_Id=479435 SubName: Full=RNA polymeras... 183 9e-45 tr|D0L4P0|D0L4P0_GORB4 Tax_Id=526226 SubName: Full=RNA polymeras... 178 3e-43 tr|C5C249|C5C249_BEUC1 Tax_Id=471853 SubName: Full=RNA polymeras... 175 2e-42 tr|D0L2K0|D0L2K0_GORB4 Tax_Id=526226 SubName: Full=RNA polymeras... 174 3e-42 tr|C2AKR8|C2AKR8_TSUPA Tax_Id=521096 SubName: Full=RNA polymeras... 172 1e-41 tr|C7QET7|C7QET7_CATAD Tax_Id=479433 SubName: Full=RNA polymeras... 172 2e-41 tr|C4EGW9|C4EGW9_STRRS Tax_Id=479432 SubName: Full=RNA polymeras... 169 1e-40 tr|Q5YY76|Q5YY76_NOCFA Tax_Id=37329 SubName: Full=Putative sigma... 168 3e-40 tr|C6GH80|C6GH80_NOCAS Tax_Id=1824 (sigK)SubName: Full=Sigma fac... 167 5e-40 tr|A1SQE7|A1SQE7_NOCSJ Tax_Id=196162 RecName: Full=RNA polymeras... 167 7e-40 tr|C9Z1G9|C9Z1G9_STRSW Tax_Id=680198 SubName: Full=Putative sigm... 166 9e-40 tr|Q828T0|Q828T0_STRAW Tax_Id=33903 (sig53)SubName: Full=Putativ... 163 1e-38 tr|C4DUZ6|C4DUZ6_9ACTO Tax_Id=446470 SubName: Full=RNA polymeras... 162 2e-38 tr|B1W331|B1W331_STRGG Tax_Id=455632 SubName: Full=Putative RNA ... 162 2e-38 tr|Q9RD50|Q9RD50_STRCO Tax_Id=1902 SubName: Full=Putative RNA po... 160 6e-38 tr|C9NE06|C9NE06_9ACTO Tax_Id=591167 SubName: Full=RNA polymeras... 159 1e-37 tr|A3TPI8|A3TPI8_9MICO Tax_Id=313589 SubName: Full=RNA polymeras... 159 1e-37 tr|B5I304|B5I304_9ACTO Tax_Id=463191 SubName: Full=RNA polymeras... 159 1e-37 tr|C7QI83|C7QI83_CATAD Tax_Id=479433 SubName: Full=RNA polymeras... 158 2e-37 tr|C8XB72|C8XB72_NAKMY Tax_Id=479431 SubName: Full=RNA polymeras... 158 3e-37 >sp|A0PNM4|SIGK_MYCUA Tax_Id=362242 (sigK)RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K factor;[Mycobacterium ulcerans] Length = 187 Score = 372 bits (956), Expect = e-102 Identities = 187/187 (100%), Positives = 187/187 (100%) Query: 1 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL Sbjct: 1 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 Query: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS Sbjct: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 Query: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL 180 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL Sbjct: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL 180 Query: 181 RNCLDAS 187 RNCLDAS Sbjct: 181 RNCLDAS 187 >tr|B2HQQ6|B2HQQ6_MYCMM Tax_Id=216594 (sigK)SubName: Full=Alternative RNA polymerase sigma factor SigK;[Mycobacterium marinum] Length = 187 Score = 372 bits (956), Expect = e-102 Identities = 187/187 (100%), Positives = 187/187 (100%) Query: 1 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL Sbjct: 1 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 Query: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS Sbjct: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 Query: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL 180 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL Sbjct: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL 180 Query: 181 RNCLDAS 187 RNCLDAS Sbjct: 181 RNCLDAS 187 >sp|O53730|SIGK_MYCTU Tax_Id=1773 (sigK)RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K factor;[Mycobacterium tuberculosis] Length = 187 Score = 300 bits (768), Expect = 5e-80 Identities = 152/187 (81%), Positives = 163/187 (87%) Query: 1 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 MTGPP S DL+ALLR++A ++ AFA FYDHT +RVYGLV RVLRD GYSEETTQEIYL Sbjct: 1 MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL 60 Query: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 EVWR AS++D+ KGS LAWLLTMAHRRAVDRVR EQAG+QRE RYGAANVD ASDVVAD Sbjct: 61 EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL 120 Query: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL 180 AIAGDERRRV ECL LTDTQRQCIELAYYGGLTY EVS+RLA NLSTIKSRMRDALR L Sbjct: 121 AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL 180 Query: 181 RNCLDAS 187 RNCLD S Sbjct: 181 RNCLDVS 187 >sp|A5TZH1|SIGK_MYCTA Tax_Id=419947 (sigK)RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K factor;[Mycobacterium tuberculosis] Length = 187 Score = 300 bits (768), Expect = 5e-80 Identities = 152/187 (81%), Positives = 163/187 (87%) Query: 1 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 MTGPP S DL+ALLR++A ++ AFA FYDHT +RVYGLV RVLRD GYSEETTQEIYL Sbjct: 1 MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL 60 Query: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 EVWR AS++D+ KGS LAWLLTMAHRRAVDRVR EQAG+QRE RYGAANVD ASDVVAD Sbjct: 61 EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL 120 Query: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL 180 AIAGDERRRV ECL LTDTQRQCIELAYYGGLTY EVS+RLA NLSTIKSRMRDALR L Sbjct: 121 AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL 180 Query: 181 RNCLDAS 187 RNCLD S Sbjct: 181 RNCLDVS 187 >sp|A1KFR7|SIGK_MYCBP Tax_Id=410289 (sigK)RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K factor;[Mycobacterium bovis] Length = 187 Score = 300 bits (768), Expect = 5e-80 Identities = 152/187 (81%), Positives = 163/187 (87%) Query: 1 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 MTGPP S DL+ALLR++A ++ AFA FYDHT +RVYGLV RVLRD GYSEETTQEIYL Sbjct: 1 MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL 60 Query: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 EVWR AS++D+ KGS LAWLLTMAHRRAVDRVR EQAG+QRE RYGAANVD ASDVVAD Sbjct: 61 EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL 120 Query: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL 180 AIAGDERRRV ECL LTDTQRQCIELAYYGGLTY EVS+RLA NLSTIKSRMRDALR L Sbjct: 121 AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL 180 Query: 181 RNCLDAS 187 RNCLD S Sbjct: 181 RNCLDVS 187 >sp|Q7U1Z6|SIGK_MYCBO Tax_Id=1765 (sigK)RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K factor;[Mycobacterium bovis] Length = 187 Score = 300 bits (768), Expect = 5e-80 Identities = 152/187 (81%), Positives = 163/187 (87%) Query: 1 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 MTGPP S DL+ALLR++A ++ AFA FYDHT +RVYGLV RVLRD GYSEETTQEIYL Sbjct: 1 MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL 60 Query: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 EVWR AS++D+ KGS LAWLLTMAHRRAVDRVR EQAG+QRE RYGAANVD ASDVVAD Sbjct: 61 EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL 120 Query: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL 180 AIAGDERRRV ECL LTDTQRQCIELAYYGGLTY EVS+RLA NLSTIKSRMRDALR L Sbjct: 121 AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL 180 Query: 181 RNCLDAS 187 RNCLD S Sbjct: 181 RNCLDVS 187 >tr|C6DT23|C6DT23_MYCTK Tax_Id=478434 SubName: Full=Alternative RNA polymerase sigma factor sigK;[Mycobacterium tuberculosis] Length = 187 Score = 300 bits (768), Expect = 5e-80 Identities = 152/187 (81%), Positives = 163/187 (87%) Query: 1 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 MTGPP S DL+ALLR++A ++ AFA FYDHT +RVYGLV RVLRD GYSEETTQEIYL Sbjct: 1 MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL 60 Query: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 EVWR AS++D+ KGS LAWLLTMAHRRAVDRVR EQAG+QRE RYGAANVD ASDVVAD Sbjct: 61 EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL 120 Query: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL 180 AIAGDERRRV ECL LTDTQRQCIELAYYGGLTY EVS+RLA NLSTIKSRMRDALR L Sbjct: 121 AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL 180 Query: 181 RNCLDAS 187 RNCLD S Sbjct: 181 RNCLDVS 187 >tr|C1AKC1|C1AKC1_MYCBT Tax_Id=561275 (sigK)SubName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 187 Score = 300 bits (768), Expect = 5e-80 Identities = 152/187 (81%), Positives = 163/187 (87%) Query: 1 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 MTGPP S DL+ALLR++A ++ AFA FYDHT +RVYGLV RVLRD GYSEETTQEIYL Sbjct: 1 MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL 60 Query: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 EVWR AS++D+ KGS LAWLLTMAHRRAVDRVR EQAG+QRE RYGAANVD ASDVVAD Sbjct: 61 EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL 120 Query: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL 180 AIAGDERRRV ECL LTDTQRQCIELAYYGGLTY EVS+RLA NLSTIKSRMRDALR L Sbjct: 121 AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL 180 Query: 181 RNCLDAS 187 RNCLD S Sbjct: 181 RNCLDVS 187 >tr|A5WJF4|A5WJF4_MYCTF Tax_Id=336982 SubName: Full=Alternative RNA polymerase sigma factor sigK;[Mycobacterium tuberculosis] Length = 187 Score = 300 bits (768), Expect = 5e-80 Identities = 152/187 (81%), Positives = 163/187 (87%) Query: 1 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 MTGPP S DL+ALLR++A ++ AFA FYDHT +RVYGLV RVLRD GYSEETTQEIYL Sbjct: 1 MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL 60 Query: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 EVWR AS++D+ KGS LAWLLTMAHRRAVDRVR EQAG+QRE RYGAANVD ASDVVAD Sbjct: 61 EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL 120 Query: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL 180 AIAGDERRRV ECL LTDTQRQCIELAYYGGLTY EVS+RLA NLSTIKSRMRDALR L Sbjct: 121 AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL 180 Query: 181 RNCLDAS 187 RNCLD S Sbjct: 181 RNCLDVS 187 >tr|A4KED3|A4KED3_MYCTU Tax_Id=395095 SubName: Full=Alternative RNA polymerase sigma factor sigK;[Mycobacterium tuberculosis str. Haarlem] Length = 187 Score = 300 bits (768), Expect = 5e-80 Identities = 152/187 (81%), Positives = 163/187 (87%) Query: 1 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 MTGPP S DL+ALLR++A ++ AFA FYDHT +RVYGLV RVLRD GYSEETTQEIYL Sbjct: 1 MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL 60 Query: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 EVWR AS++D+ KGS LAWLLTMAHRRAVDRVR EQAG+QRE RYGAANVD ASDVVAD Sbjct: 61 EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL 120 Query: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL 180 AIAGDERRRV ECL LTDTQRQCIELAYYGGLTY EVS+RLA NLSTIKSRMRDALR L Sbjct: 121 AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL 180 Query: 181 RNCLDAS 187 RNCLD S Sbjct: 181 RNCLDVS 187 >tr|A2VFD1|A2VFD1_MYCTU Tax_Id=348776 SubName: Full=Alternative RNA polymerase sigma factor sigK;[Mycobacterium tuberculosis C] Length = 187 Score = 300 bits (768), Expect = 5e-80 Identities = 152/187 (81%), Positives = 163/187 (87%) Query: 1 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 MTGPP S DL+ALLR++A ++ AFA FYDHT +RVYGLV RVLRD GYSEETTQEIYL Sbjct: 1 MTGPPRLSSDLDALLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL 60 Query: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 EVWR AS++D+ KGS LAWLLTMAHRRAVDRVR EQAG+QRE RYGAANVD ASDVVAD Sbjct: 61 EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL 120 Query: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL 180 AIAGDERRRV ECL LTDTQRQCIELAYYGGLTY EVS+RLA NLSTIKSRMRDALR L Sbjct: 121 AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL 180 Query: 181 RNCLDAS 187 RNCLD S Sbjct: 181 RNCLDVS 187 >tr|A8CVK6|A8CVK6_9MYCO Tax_Id=78331 (sigK)SubName: Full=SigK;[Mycobacterium canettii] Length = 187 Score = 298 bits (764), Expect = 1e-79 Identities = 151/187 (80%), Positives = 162/187 (86%) Query: 1 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 MTGPP S DL+ LLR++A ++ AFA FYDHT +RVYGLV RVLRD GYSEETTQEIYL Sbjct: 1 MTGPPRLSSDLDVLLRRVAGHDQAAFAEFYDHTKSRVYGLVMRVLRDTGYSEETTQEIYL 60 Query: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 EVWR AS++D+ KGS LAWLLTMAHRRAVDRVR EQAG+QRE RYGAANVD ASDVVAD Sbjct: 61 EVWRNASEFDSAKGSALAWLLTMAHRRAVDRVRCEQAGNQREVRYGAANVDPASDVVADL 120 Query: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL 180 AIAGDERRRV ECL LTDTQRQCIELAYYGGLTY EVS+RLA NLSTIKSRMRDALR L Sbjct: 121 AIAGDERRRVTECLKALTDTQRQCIELAYYGGLTYVEVSRRLAANLSTIKSRMRDALRSL 180 Query: 181 RNCLDAS 187 RNCLD S Sbjct: 181 RNCLDVS 187 >tr|A4T702|A4T702_MYCGI Tax_Id=350054 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium gilvum] Length = 188 Score = 258 bits (659), Expect = 2e-67 Identities = 122/175 (69%), Positives = 152/175 (86%) Query: 10 DLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTASDY 69 +L+ALLRQ+AR + DAFA FYD T +RV+GLV RVLRD GYSEETTQ++YL+VWRTA +Y Sbjct: 11 ELDALLRQVARRDADAFAAFYDQTRSRVFGLVTRVLRDPGYSEETTQDVYLQVWRTAHNY 70 Query: 70 DATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDERRR 129 D + GSPLAWLLT+AHRRAVDRVR+E+A S R+SRYGAA ++ +D V+D+AI DER+R Sbjct: 71 DPSAGSPLAWLLTLAHRRAVDRVRSEEAASSRDSRYGAATIETPTDHVSDAAILSDERQR 130 Query: 130 VVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 V +CL LTDTQR+CI+LAYY GLTYA+VS+RLATNL+TIKSRMRDA+RGL+ C+ Sbjct: 131 VTDCLGALTDTQRECIQLAYYDGLTYAQVSERLATNLATIKSRMRDAIRGLKRCM 185 >sp|A3Q5U0|SIGK_MYCSJ Tax_Id=164757 (sigK)RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K factor;[Mycobacterium sp.] Length = 193 Score = 246 bits (629), Expect = 7e-64 Identities = 122/183 (66%), Positives = 147/183 (80%) Query: 5 PGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWR 64 P + DL+ LLRQ+A + DAFA YD T +RVYG+V RVLRD GYSEETTQ+IYL+VWR Sbjct: 11 PFVTTDLDVLLRQVAERDVDAFAALYDRTRSRVYGMVTRVLRDPGYSEETTQDIYLQVWR 70 Query: 65 TASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAG 124 +A YD GSP+AWLLT+AHRRAVDRVR+E+A SQRESRYGAA+VD D VADS I Sbjct: 71 SAGSYDPKAGSPMAWLLTLAHRRAVDRVRSEEAASQRESRYGAASVDPPVDHVADSVILL 130 Query: 125 DERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 DERRRVV+C+ L+D QR+ I+LAYY GLTY +VS+RL+ NL+TIKSRMRD +RGL+NCL Sbjct: 131 DERRRVVDCMGSLSDLQREAIQLAYYEGLTYVQVSERLSANLATIKSRMRDGIRGLKNCL 190 Query: 185 DAS 187 S Sbjct: 191 GMS 193 >sp|A1TEV0|SIGK_MYCVP Tax_Id=350058 (sigK)RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K factor;[Mycobacterium vanbaalenii] Length = 196 Score = 245 bits (625), Expect = 2e-63 Identities = 119/175 (68%), Positives = 142/175 (81%) Query: 10 DLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTASDY 69 +L+ALLRQ+A+ + +AFA FYD T RVYGL+ RVLRD GYSEETTQ++YL+VWR A+ Y Sbjct: 19 ELDALLRQVAQRDAEAFAAFYDQTRARVYGLITRVLRDPGYSEETTQDVYLQVWRNAAGY 78 Query: 70 DATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDERRR 129 D + GS L+WLLT+AHRRAVDRVR+EQA S RESRYGA +VD SD VAD + DERRR Sbjct: 79 DPSVGSALSWLLTLAHRRAVDRVRSEQAASTRESRYGAISVDPPSDHVADDVLLDDERRR 138 Query: 130 VVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 V CLD LTD QR+CI+LAYY GLTYA+V+ RLA NL+TIKSRMRD +R LR CL Sbjct: 139 VAGCLDSLTDVQRECIQLAYYDGLTYAQVADRLAANLATIKSRMRDGIRALRKCL 193 >sp|Q1B3Q8|SIGK_MYCSS Tax_Id=164756 (sigK)RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K factor;[Mycobacterium sp.] Length = 193 Score = 244 bits (622), Expect = 4e-63 Identities = 121/183 (66%), Positives = 146/183 (79%) Query: 5 PGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWR 64 P + DL+ LLRQ+A + DAFA YD T +RVYG+V RVLRD GYSEETTQ+IYL+VWR Sbjct: 11 PFVTTDLDVLLRQVAERDVDAFAALYDRTRSRVYGMVTRVLRDPGYSEETTQDIYLQVWR 70 Query: 65 TASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAG 124 +A YD GSP+AWLLT+AHRRAVDRVR+E+A SQRESRYGAA+VD D VADS I Sbjct: 71 SAGSYDPKAGSPMAWLLTLAHRRAVDRVRSEEAASQRESRYGAASVDPPVDHVADSVILL 130 Query: 125 DERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 DERRRVV+C+ L+D QR+ I+LAYY GLTY +VS+RL+ NL+TIKSRMR +RGL+NCL Sbjct: 131 DERRRVVDCMGSLSDLQREAIQLAYYEGLTYVQVSERLSANLATIKSRMRGGIRGLKNCL 190 Query: 185 DAS 187 S Sbjct: 191 GMS 193 >sp|A1ULE1|SIGK_MYCSK Tax_Id=189918 (sigK)RecName: Full=RNA polymerase sigma factor sigK; AltName: Full=Sigma-K factor;[Mycobacterium sp.] Length = 193 Score = 244 bits (622), Expect = 4e-63 Identities = 121/183 (66%), Positives = 146/183 (79%) Query: 5 PGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWR 64 P + DL+ LLRQ+A + DAFA YD T +RVYG+V RVLRD GYSEETTQ+IYL+VWR Sbjct: 11 PFVTTDLDVLLRQVAERDVDAFAALYDRTRSRVYGMVTRVLRDPGYSEETTQDIYLQVWR 70 Query: 65 TASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAG 124 +A YD GSP+AWLLT+AHRRAVDRVR+E+A SQRESRYGAA+VD D VADS I Sbjct: 71 SAGSYDPKAGSPMAWLLTLAHRRAVDRVRSEEAASQRESRYGAASVDPPVDHVADSVILL 130 Query: 125 DERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 DERRRVV+C+ L+D QR+ I+LAYY GLTY +VS+RL+ NL+TIKSRMR +RGL+NCL Sbjct: 131 DERRRVVDCMGSLSDLQREAIQLAYYEGLTYVQVSERLSANLATIKSRMRGGIRGLKNCL 190 Query: 185 DAS 187 S Sbjct: 191 GMS 193 >tr|C1B2B2|C1B2B2_RHOOB Tax_Id=632772 (sigK)SubName: Full=RNA polymerase ECF-type sigma factor SigK;[Rhodococcus opacus] Length = 192 Score = 206 bits (523), Expect = 1e-51 Identities = 100/174 (57%), Positives = 132/174 (75%) Query: 11 LNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTASDYD 70 L ALL +I+RGERDAF+ FY+ T RVYG+V RVLRD GYSEETTQE+YL+VW A+ +D Sbjct: 13 LTALLARISRGERDAFSDFYERTSARVYGMVLRVLRDPGYSEETTQEVYLQVWSNAAKFD 72 Query: 71 ATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDERRRV 130 +GSPL+WL+T+AHRRAVDRVR+EQ+GS+RE+ YGA++ D V++ + V Sbjct: 73 PKQGSPLSWLITLAHRRAVDRVRSEQSGSEREAAYGASSWYGPFDAVSEEVTRRGDTSDV 132 Query: 131 VECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 V+CL LT+ Q++ + LAYYGGLTY EVS+RL+ L T+KSR+RD L L+ CL Sbjct: 133 VDCLGTLTEVQQRTVVLAYYGGLTYREVSERLSVGLPTVKSRIRDGLIRLKQCL 186 >tr|Q0SDL9|Q0SDL9_RHOSR Tax_Id=101510 SubName: Full=Sigma factor, sigma 70 type, group 4 (ECF);[Rhodococcus sp.] Length = 192 Score = 203 bits (517), Expect = 6e-51 Identities = 99/174 (56%), Positives = 131/174 (75%) Query: 11 LNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTASDYD 70 L ALL +IA+GERDAF+ FY+ T RVYG+V RVLRD GYSEETTQE+YL+VW A +D Sbjct: 13 LTALLARIAQGERDAFSDFYERTSARVYGMVLRVLRDPGYSEETTQEVYLQVWNNADKFD 72 Query: 71 ATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDERRRV 130 +GSPL+WL+T+AHRRAVDRVR+EQ+G++RE+ YGA++ D V++ + V Sbjct: 73 PKQGSPLSWLITLAHRRAVDRVRSEQSGTEREAAYGASSWYGPFDAVSEEVTRRGDTSDV 132 Query: 131 VECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 V+CL LT+ Q++ + LAYYGGLTY EVS+RL+ L T+KSR+RD L L+ CL Sbjct: 133 VDCLGTLTEVQQRTVVLAYYGGLTYREVSERLSVALPTVKSRIRDGLIRLKQCL 186 >tr|C0ZW99|C0ZW99_RHOE4 Tax_Id=234621 (sigK)SubName: Full=RNA polymerase ECF-type sigma factor SigK;[Rhodococcus erythropolis] Length = 222 Score = 200 bits (508), Expect = 7e-50 Identities = 97/177 (54%), Positives = 124/177 (70%) Query: 8 SDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTAS 67 S +L +L +A G++ AFA FYD T +RVYG+V RVLRD G+SEE QE+YL+ W++A Sbjct: 43 SRELAVILANVAGGDQSAFAEFYDRTSSRVYGMVLRVLRDPGFSEEAVQEVYLQAWKSAD 102 Query: 68 DYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDER 127 +D KGS L+WLLT+AHRRAVDRVR+EQ+ S R++ Y N DVV+D DE Sbjct: 103 SFDPAKGSALSWLLTLAHRRAVDRVRSEQSSSDRQALYDTTNATPEFDVVSDEVTRRDEH 162 Query: 128 RRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 R V +CL+ LTDTQRQ + LAYYGG TY EV++ L + TIKSR+RD L LR CL Sbjct: 163 RAVTDCLETLTDTQRQSVTLAYYGGRTYREVAEDLGVAIPTIKSRIRDGLLRLRGCL 219 >tr|C3JGV8|C3JGV8_RHOER Tax_Id=596309 SubName: Full=RNA polymerase sigma factor SigK;[Rhodococcus erythropolis SK121] Length = 208 Score = 200 bits (508), Expect = 7e-50 Identities = 97/177 (54%), Positives = 124/177 (70%) Query: 8 SDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTAS 67 S +L +L +A G++ AFA FYD T +RVYG+V RVLRD G+SEE QE+YL+ W++A Sbjct: 29 SRELAVILADVAGGDQSAFAEFYDRTSSRVYGMVLRVLRDPGFSEEAVQEVYLQAWKSAD 88 Query: 68 DYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDER 127 +D KGS L+WLLT+AHRRAVDRVR+EQ+ S R++ Y N DVV+D DE Sbjct: 89 SFDPAKGSALSWLLTLAHRRAVDRVRSEQSSSDRQALYDTTNATPEFDVVSDEVTRRDEH 148 Query: 128 RRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 R V +CL+ LTDTQRQ + LAYYGG TY EV++ L + TIKSR+RD L LR CL Sbjct: 149 RAVTDCLETLTDTQRQSVTLAYYGGRTYREVAEDLGVAIPTIKSRIRDGLLRLRGCL 205 >tr|D0LAC0|D0LAC0_GORB4 Tax_Id=526226 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Gordonia bronchialis] Length = 225 Score = 198 bits (504), Expect = 2e-49 Identities = 100/174 (57%), Positives = 125/174 (71%) Query: 11 LNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTASDYD 70 L LL +IA G+ AFA FYD T RVYG+V RVLRD GYSEETTQE++L+VWR+A Y Sbjct: 47 LAELLSRIADGDDGAFAEFYDATAARVYGMVLRVLRDPGYSEETTQEVFLQVWRSAGSYS 106 Query: 71 ATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDERRRV 130 A GSPL+WL+TMAHRRAVDRVR+E A S+R+ RY A + D+V+D+ + + V Sbjct: 107 ADAGSPLSWLITMAHRRAVDRVRSESASSRRDIRYAAQAQESPFDLVSDAVGSSETAETV 166 Query: 131 VECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 V CL LTD QRQ + LAYY GLTY EV++RL+ L T+KSR+RD + LR CL Sbjct: 167 VGCLGSLTDVQRQSVVLAYYEGLTYREVAERLSVALPTVKSRIRDGMIRLRRCL 220 >tr|Q0S3B7|Q0S3B7_RHOSR Tax_Id=101510 SubName: Full=Sigma factor, sigma 70 type, group 4 (ECF);[Rhodococcus sp.] Length = 227 Score = 194 bits (493), Expect = 4e-48 Identities = 93/177 (52%), Positives = 126/177 (71%) Query: 8 SDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTAS 67 S +L+ + ++A G+ DAFA YD T RV+G+V RVLRD GY+EETTQE++L+ WRTAS Sbjct: 48 STELHDTMARVANGDADAFAELYDRTSARVHGMVLRVLRDPGYAEETTQEVFLQAWRTAS 107 Query: 68 DYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDER 127 ++D +GS L+WL+T+AHRRAVDRVR+EQAG+ RE+ Y N+ D V + E Sbjct: 108 NFDPARGSVLSWLMTLAHRRAVDRVRSEQAGTDREALYETTNIAGPFDHVTEEVTRRLEH 167 Query: 128 RRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 + V+ CLD LTDTQR+ + +AYY G TY EV+ +L LST+K+R+RD L LR CL Sbjct: 168 QSVLACLDSLTDTQRESVAMAYYDGRTYREVASQLGVALSTVKTRIRDGLTRLRGCL 224 >tr|C1B078|C1B078_RHOOB Tax_Id=632772 SubName: Full=RNA polymerase ECF-type sigma factor;[Rhodococcus opacus] Length = 196 Score = 191 bits (486), Expect = 3e-47 Identities = 93/177 (52%), Positives = 124/177 (70%) Query: 8 SDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTAS 67 S +L + ++A G+ DAFA YD T RV+G+V RVLRD GY+EETTQE++L+ WRTAS Sbjct: 17 SAELYDTMARVANGDADAFAELYDRTSARVHGMVLRVLRDPGYAEETTQEVFLQAWRTAS 76 Query: 68 DYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDER 127 ++D +GS L+WL+T+AHRRAVDRVR+EQAG+ RES Y N+ D V + E Sbjct: 77 NFDPARGSVLSWLMTLAHRRAVDRVRSEQAGTDRESLYETTNIAGPFDHVTEEVTRRLEH 136 Query: 128 RRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 + V+ CLD LTD QR+ + +AYY G TY EV+ +L LST+K+R+RD L LR CL Sbjct: 137 QSVLACLDSLTDMQRESVAMAYYDGRTYREVASQLGVALSTVKTRIRDGLTRLRGCL 193 >tr|A1R871|A1R871_ARTAT Tax_Id=290340 SubName: Full=Putative RNA polymerase sigma (70) factor;[Arthrobacter aurescens] Length = 238 Score = 191 bits (484), Expect = 4e-47 Identities = 99/191 (51%), Positives = 131/191 (68%), Gaps = 9/191 (4%) Query: 3 GPP-----GRSDDLNA----LLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEE 53 GPP G + DLN+ LL +A G++ AFA FY T RV+G+ RVL D SE+ Sbjct: 45 GPPVFEATGSATDLNSQLAGLLELVAAGDQQAFAEFYGLTSRRVFGMARRVLIDPDLSED 104 Query: 54 TTQEIYLEVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLA 113 TQE+Y++VW+ A+ +D + GSPLAWL+T+AHRRA+DRVRA QA + RE++YGAA+ DL Sbjct: 105 ATQEVYIQVWQGAAKFDRSAGSPLAWLMTIAHRRAIDRVRAVQAATDREAKYGAASQDLD 164 Query: 114 SDVVADSAIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRM 173 D+VA+ A + E V CL LTDTQR+ + LAYYGGLTY EV++ L + TIKSR+ Sbjct: 165 RDLVAEEADSNLEAEAVSRCLGTLTDTQRESVRLAYYGGLTYREVAEHLGAAVPTIKSRI 224 Query: 174 RDALRGLRNCL 184 RD L L+ CL Sbjct: 225 RDGLLRLKTCL 235 >tr|C1YVR6|C1YVR6_NOCDA Tax_Id=446468 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 203 Score = 189 bits (481), Expect = 1e-46 Identities = 100/181 (55%), Positives = 122/181 (67%), Gaps = 2/181 (1%) Query: 4 PPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVW 63 PP + L LLRQ+ARGE AF YD VYGLV RVLRD SEE QE+ +EVW Sbjct: 21 PPAQR--LTELLRQVARGEESAFGEVYDLVIPSVYGLVRRVLRDPAQSEEVAQEVMVEVW 78 Query: 64 RTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIA 123 RTA YD +GSP AW++T+AHRRAVDRVR+EQA + RE+R AA+ D VA+ A Sbjct: 79 RTACRYDERRGSPQAWVMTLAHRRAVDRVRSEQAATDREARVAAASTQRPYDEVAEEATN 138 Query: 124 GDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNC 183 ER RV CL+ LT+ Q Q + LAYYGG TY EV++ L+T L T+K+RMRD L LR+C Sbjct: 139 RLERERVRRCLETLTELQGQSVRLAYYGGYTYREVARLLSTPLGTVKTRMRDGLIRLRDC 198 Query: 184 L 184 L Sbjct: 199 L 199 >tr|B8HBN8|B8HBN8_ARTCA Tax_Id=452863 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Arthrobacter chlorophenolicus] Length = 202 Score = 188 bits (477), Expect = 3e-46 Identities = 93/184 (50%), Positives = 130/184 (70%) Query: 4 PPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVW 63 P S L LL IARG++ +FA FY T RV+G+ RVL D SE+TTQE++L+VW Sbjct: 19 PADSSHQLAVLLEGIARGDQASFAEFYRLTSRRVFGMARRVLIDPELSEDTTQEVFLQVW 78 Query: 64 RTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIA 123 + A+ +D++ GSPL+WL+T++HRRAVDRVR+ Q+ S RE++YGA++ D+ D V+D + Sbjct: 79 QNAAKFDSSAGSPLSWLMTISHRRAVDRVRSAQSSSDREAKYGASSQDIEHDSVSDEVSS 138 Query: 124 GDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNC 183 E VV CL+ LT+TQ++ + LAYYGGLTY EV++RL + TIKSR+RD L L+ C Sbjct: 139 RLEAEAVVRCLETLTETQQESVRLAYYGGLTYREVAERLNAAVPTIKSRIRDGLIRLKTC 198 Query: 184 LDAS 187 L S Sbjct: 199 LGVS 202 >tr|A0JYJ6|A0JYJ6_ARTS2 Tax_Id=290399 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Arthrobacter sp.] Length = 201 Score = 188 bits (477), Expect = 3e-46 Identities = 95/190 (50%), Positives = 134/190 (70%), Gaps = 4/190 (2%) Query: 2 TGPPGRSDDLNA----LLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQE 57 T PG S D+N LL +IA G++ AFA FY+ T RV+G+ RVL D SE+TTQE Sbjct: 12 TASPGTSADVNRRLGDLLARIADGDQGAFAEFYELTSRRVFGMARRVLIDPELSEDTTQE 71 Query: 58 IYLEVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVV 117 ++L+VW+ A+ ++ GSPLAWL+T++HRRAVD+VR+ Q+ + RE++YGA++ ++ D V Sbjct: 72 VFLQVWQNAAKFNPEAGSPLAWLMTISHRRAVDKVRSSQSSTDREAKYGASSQEIDHDSV 131 Query: 118 ADSAIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDAL 177 +D + E VV CLD LT+TQ+Q + LAYYGGLTY EV+++L T + TIKSR+RD L Sbjct: 132 SDEVGSRLEAEAVVRCLDTLTETQQQSVRLAYYGGLTYREVAEKLNTAVPTIKSRIRDGL 191 Query: 178 RGLRNCLDAS 187 L+ CL S Sbjct: 192 IRLKTCLGVS 201 >tr|Q5Z1F7|Q5Z1F7_NOCFA Tax_Id=37329 SubName: Full=Putative sigma factor;[Nocardia farcinica] Length = 191 Score = 187 bits (474), Expect = 6e-46 Identities = 96/177 (54%), Positives = 121/177 (68%) Query: 8 SDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTAS 67 S +L ALL + R ++ AFA YD T RV+GLV RVL+D GY+EETTQE+YL++WRTA+ Sbjct: 12 SIELAALLHRCGRADQHAFAELYDRTSARVFGLVLRVLQDPGYAEETTQEVYLQIWRTAA 71 Query: 68 DYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDER 127 +D +GS + WL+T+AHRRAVDRVRAEQA S RE+ YGA +D D V + E+ Sbjct: 72 SFDPDRGSAMTWLMTLAHRRAVDRVRAEQAHSSREAAYGARVLDNEFDEVVEEVERRAEQ 131 Query: 128 RRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 V L LTDTQR+ I LAYYGG TYAEV+ L L T+KSR+RD L L+ L Sbjct: 132 HAVRASLAELTDTQREAISLAYYGGRTYAEVAAHLGVGLPTVKSRIRDGLTRLKKSL 188 >tr|A9WPR0|A9WPR0_RENSM Tax_Id=288705 SubName: Full=RNA polymerase sigma factor;[Renibacterium salmoninarum] Length = 223 Score = 186 bits (473), Expect = 8e-46 Identities = 92/184 (50%), Positives = 132/184 (71%), Gaps = 1/184 (0%) Query: 5 PGRS-DDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVW 63 PG+ D L L+R A+G +AFA Y T RVYG+ RVL DA +E+ TQE+YL++W Sbjct: 40 PGQGLDVLVELIRATAQGNHEAFAELYRLTSRRVYGMARRVLIDAELAEDATQEVYLQIW 99 Query: 64 RTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIA 123 + A+ +D++ GSPLAWL+T+AHRRAVD+VR+ Q+ + RE+RYGAA+ + D VAD+ Sbjct: 100 QNAAKFDSSAGSPLAWLMTIAHRRAVDKVRSTQSSTDREARYGAASQGIEHDEVADAVSD 159 Query: 124 GDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNC 183 + VV+CL LTDTQ++ ++LAYYGGLTY EV+++L + T+KSR+RD L L++C Sbjct: 160 KIDAESVVKCLATLTDTQQESVKLAYYGGLTYREVAEKLGAAVPTVKSRIRDGLLRLKSC 219 Query: 184 LDAS 187 L+ S Sbjct: 220 LEVS 223 >tr|C1WPD4|C1WPD4_9ACTO Tax_Id=479435 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Kribbella flavida DSM 17836] Length = 199 Score = 183 bits (464), Expect = 9e-45 Identities = 89/171 (52%), Positives = 120/171 (70%) Query: 14 LLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTASDYDATK 73 L+ ++ARG+ DAFA YD RVYGL+ RVLR+ SEE TQE+ +EVWRT + YDA + Sbjct: 24 LMARVARGDSDAFAQLYDQMVPRVYGLIRRVLRNPAQSEEVTQEVMVEVWRTCTRYDADR 83 Query: 74 GSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDERRRVVEC 133 GSP +W+LTMAHRRA+DRVR+EQ+ + RE AA+ D VA++ + E ++V C Sbjct: 84 GSPASWILTMAHRRAIDRVRSEQSSTDREQAMAAASATTEYDEVAEAVTSNLEVQQVRNC 143 Query: 134 LDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 L LT+ QR+ + LAYYGG +Y EV++ L L+TIK+RMRD L LR+CL Sbjct: 144 LSALTELQRESVTLAYYGGYSYREVAELLDAKLATIKARMRDGLIRLRDCL 194 >tr|D0L4P0|D0L4P0_GORB4 Tax_Id=526226 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Gordonia bronchialis] Length = 192 Score = 178 bits (451), Expect = 3e-43 Identities = 92/178 (51%), Positives = 119/178 (66%) Query: 4 PPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVW 63 P DDL ALL ++ +G+ AFA FYD T RVYG+ RV+RD G+SEE TQE+YL VW Sbjct: 7 PTAGPDDLGALLDRVGKGDAAAFATFYDLTAQRVYGMALRVIRDRGFSEEITQEVYLTVW 66 Query: 64 RTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIA 123 RTA+ +D + GS L+W+LTMAHRRAVDRVR+E A +R +G A + D V + + Sbjct: 67 RTANTFDGSSGSALSWVLTMAHRRAVDRVRSEVASRRRTLAHGQAAITPPFDEVTEISER 126 Query: 124 GDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLR 181 + R V L LT QR+ IELAY+ GLTY EV++RL L T+KSR+RD +R LR Sbjct: 127 REAARLVRSGLQRLTPAQRESIELAYFDGLTYREVAERLQVALPTVKSRIRDGMRRLR 184 >tr|C5C249|C5C249_BEUC1 Tax_Id=471853 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Beutenbergia cavernae] Length = 188 Score = 175 bits (443), Expect = 2e-42 Identities = 91/171 (53%), Positives = 114/171 (66%) Query: 14 LLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTASDYDATK 73 LL Q+ARG+RDAFA+ YD T VYG RVLRD + ETTQ++ +E+WRTA+ +D + Sbjct: 15 LLLQVARGDRDAFAVLYDETSPVVYGTALRVLRDPDLAAETTQDVMVELWRTAARFDPAR 74 Query: 74 GSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDERRRVVEC 133 GS AW+ T+AHRRAVDRVRAEQA R+ + D VA+ D+ RV C Sbjct: 75 GSVRAWVATLAHRRAVDRVRAEQAHRTRDEADAVRDYRPPVDDVAEEVERRDDADRVARC 134 Query: 134 LDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 LDGLTD QR+ I LAY+GGLTY EV++ L L T+KSR+RD L LR CL Sbjct: 135 LDGLTDLQRRSILLAYWGGLTYREVAEDLGAALPTVKSRIRDGLERLRACL 185 >tr|D0L2K0|D0L2K0_GORB4 Tax_Id=526226 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Gordonia bronchialis] Length = 198 Score = 174 bits (442), Expect = 3e-42 Identities = 88/184 (47%), Positives = 123/184 (66%), Gaps = 1/184 (0%) Query: 2 TGPPGRS-DDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 T GR+ D+L ALL A G+R AFA YD T +R+YGL R++RD Y+EE QE YL Sbjct: 9 TADSGRAADELVALLTGAAGGDRGAFARLYDLTSSRIYGLAFRIVRDRHYAEEIVQEAYL 68 Query: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 + W+ A +Y +GS ++W++T+AHRRAVDRVR+E+ ++ + YGAANV V + Sbjct: 69 QYWQKAPEYHPARGSVISWMMTIAHRRAVDRVRSEELQQRKVADYGAANVSPPQAVPLEI 128 Query: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL 180 +A DE + C++ LTD QR IE++Y+ GL+Y EV+ +T L TIKSR+RD LR L Sbjct: 129 VVADDEAATLRSCMNELTDLQRDSIEMSYFNGLSYPEVAAETSTPLPTIKSRIRDGLRRL 188 Query: 181 RNCL 184 +NCL Sbjct: 189 KNCL 192 >tr|C2AKR8|C2AKR8_TSUPA Tax_Id=521096 SubName: Full=RNA polymerase, sigma subunit, ECF family;[Tsukamurella paurometabola DSM 20162] Length = 189 Score = 172 bits (437), Expect = 1e-41 Identities = 86/175 (49%), Positives = 115/175 (65%) Query: 10 DLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTASDY 69 D +ALL ++A G+ AF YD T VYG RV+ D GY EE TQE+YLE W ASD+ Sbjct: 7 DADALLPRVAGGDVGAFRDLYDRTAHLVYGTAVRVIGDRGYGEEITQEVYLEAWHKASDF 66 Query: 70 DATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDERRR 129 D +GS +WL+T+AHRRAVDRVRAE+A RE+ + D V+++A ++ Sbjct: 67 DPARGSAQSWLVTIAHRRAVDRVRAERARGDRENTFATDAYQRPHDTVSEAAERNEDATA 126 Query: 130 VVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 VV+CLD L+ +QR + LAYYGG TY EV+++L T L TIK+R+RD + LR CL Sbjct: 127 VVDCLDTLSSSQRDALTLAYYGGHTYREVAEQLDTPLPTIKTRIRDGIARLRRCL 181 >tr|C7QET7|C7QET7_CATAD Tax_Id=479433 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Catenulispora acidiphila] Length = 194 Score = 172 bits (435), Expect = 2e-41 Identities = 85/174 (48%), Positives = 118/174 (67%) Query: 11 LNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTASDYD 70 + LL ++A G+R+AF Y+H + G RVLRD +EE TQE+ +E+WRTAS +D Sbjct: 17 VETLLHRVALGDREAFDAVYEHLAGPILGTARRVLRDPAQAEEVTQEVLVEIWRTASRFD 76 Query: 71 ATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDERRRV 130 T+GS AW LTMAH RAVDRVR+ A ++RE+R V+ D V ++ A +R+RV Sbjct: 77 PTRGSARAWALTMAHARAVDRVRSADATARREARAAELMVEQPFDQVVEAVEARLDRQRV 136 Query: 131 VECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 CL+GLT+ QRQ + LAYYGG TY++V+ +L T L T+K+R+RD L LR+CL Sbjct: 137 RRCLEGLTELQRQSVTLAYYGGYTYSQVANQLDTPLGTVKTRLRDGLTRLRDCL 190 >tr|C4EGW9|C4EGW9_STRRS Tax_Id=479432 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Streptosporangium roseum DSM 43021] Length = 187 Score = 169 bits (428), Expect = 1e-40 Identities = 88/179 (49%), Positives = 113/179 (63%) Query: 6 GRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRT 65 G L LL Q+A G AF YD V+GL RV+RD +EE QE+ +EVWRT Sbjct: 5 GEEPGLEDLLAQVALGREQAFNRVYDLLAGPVFGLARRVVRDRAQAEEVAQEVLVEVWRT 64 Query: 66 ASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGD 125 AS YD T+GS L+W++TMAHRR+VDRVR+ QA + RE + + ++A D V++ Sbjct: 65 ASRYDRTRGSALSWVMTMAHRRSVDRVRSAQASADREEKVSRMSGEVAYDQVSEVVTTRL 124 Query: 126 ERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 E RV CL GLTD QRQ + LAYYGG +Y EV+ L L TIK+RMRD L LR+C+ Sbjct: 125 EGERVRRCLGGLTDLQRQAVTLAYYGGYSYPEVAGLLRVPLGTIKTRMRDGLVRLRDCM 183 >tr|Q5YY76|Q5YY76_NOCFA Tax_Id=37329 SubName: Full=Putative sigma factor;[Nocardia farcinica] Length = 207 Score = 168 bits (425), Expect = 3e-40 Identities = 92/184 (50%), Positives = 114/184 (61%) Query: 4 PPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVW 63 P G DL ALL QIA G+R+AF FY T RV+ RVLR +EETTQE++L+VW Sbjct: 22 PLGEGPDLAALLSQIAAGDREAFTQFYRATNVRVFRTALRVLRGHAAAEETTQEVFLQVW 81 Query: 64 RTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIA 123 A YD SP+ WL+ + HRRAVDRVRAE A RES YGA + A DVVA++A+ Sbjct: 82 SIADRYDRRLCSPVGWLMMLTHRRAVDRVRAEAAAGIRESTYGATSSSAAYDVVAEAAVQ 141 Query: 124 GDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNC 183 ER V L GL+ QR+ I LAYYGG TY EV+ L L T+K+R+R L+ L Sbjct: 142 RLERLEVARYLRGLSAVQREAIALAYYGGCTYREVAAHLDVPLPTVKTRIRSGLQQLEAS 201 Query: 184 LDAS 187 L A+ Sbjct: 202 LRAA 205 >tr|C6GH80|C6GH80_NOCAS Tax_Id=1824 (sigK)SubName: Full=Sigma factor K;[Nocardia asteroides] Length = 210 Score = 167 bits (423), Expect = 5e-40 Identities = 86/166 (51%), Positives = 111/166 (66%) Query: 1 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 +T S +L ALL + R +++AFA YD TC RV+GLV RVL D GY+EETTQE+YL Sbjct: 35 VTARAAESIELAALLHRCGRADQEAFAELYDRTCARVFGLVLRVLHDPGYAEETTQEVYL 94 Query: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 ++WR AS +D KGS + WL+T+AHRRAVDRVRAEQA +QRE YG + D V + Sbjct: 95 QIWRMASSFDPAKGSAVTWLMTLAHRRAVDRVRAEQAHTQREVAYGIRVLGNEFDEVTEE 154 Query: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNL 166 +++ V+ L LT+TQR+ I LAYYGG TYAEV+ L L Sbjct: 155 VERRLDQQAVLAGLATLTETQREAISLAYYGGRTYAEVATYLDVGL 200 >tr|A1SQE7|A1SQE7_NOCSJ Tax_Id=196162 RecName: Full=RNA polymerase sigma factor;[Nocardioides sp.] Length = 200 Score = 167 bits (422), Expect = 7e-40 Identities = 88/182 (48%), Positives = 120/182 (65%), Gaps = 2/182 (1%) Query: 3 GPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEV 62 G PG DL LLR+ ARG+ AFA YD T +RV+GL RV+RD +EE TQE +LE+ Sbjct: 17 GAPGA--DLVELLRRSARGDEQAFARLYDATGSRVHGLALRVVRDPAQAEEVTQEAFLEI 74 Query: 63 WRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAI 122 WRTA+ +D +GSPLAWLLT+ HR+AVDRVR+ QA ++R++ Y N + D A++A Sbjct: 75 WRTATRFDPDRGSPLAWLLTITHRKAVDRVRSAQAATRRDTTYHEQNQPVEHDETAEAAH 134 Query: 123 AGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRN 182 A E RV L LT+ QR+ + LAY+GG T+ EV+ L + T K+R+RD L LR+ Sbjct: 135 ASLEAHRVRGALAALTEVQREAVGLAYFGGYTHTEVATMLDLPVGTAKTRIRDGLIRLRD 194 Query: 183 CL 184 + Sbjct: 195 AM 196 >tr|C9Z1G9|C9Z1G9_STRSW Tax_Id=680198 SubName: Full=Putative sigma factor;[Streptomyces scabies] Length = 180 Score = 166 bits (421), Expect = 9e-40 Identities = 87/175 (49%), Positives = 116/175 (66%) Query: 10 DLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTASDY 69 + + LL ++A G++ AF Y V+GLV RV+RD SEE QE+ LE+WR+A + Sbjct: 2 EADRLLVRVAGGDQRAFEDLYAVVSGPVFGLVRRVVRDPAQSEEVAQEVLLELWRSAGRF 61 Query: 70 DATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDERRR 129 D +GS L+W+LT+AHRRAVDRVR+ +A ++RE R G N A D VA+ AG ER+ Sbjct: 62 DPARGSALSWILTLAHRRAVDRVRSARAATEREQREGRRNHHPAFDQVAEEVEAGLERQW 121 Query: 130 VVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 V CLD LT QR+ + LAYY G TY EV++RL+ L T+K+RMRD L LR CL Sbjct: 122 VRHCLDKLTTLQRESVTLAYYDGYTYREVAERLSCPLGTVKTRMRDGLTRLRECL 176 >tr|Q828T0|Q828T0_STRAW Tax_Id=33903 (sig53)SubName: Full=Putative RNA polymerase ECF-subfamily sigma factor;[Streptomyces avermitilis] Length = 182 Score = 163 bits (412), Expect = 1e-38 Identities = 87/171 (50%), Positives = 111/171 (64%) Query: 14 LLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTASDYDATK 73 LL +A G++ AF Y V+GLV RV+RD SEE QE+ LE+WR+A+ +D + Sbjct: 8 LLVLVAEGDQRAFEELYGLVSGPVFGLVRRVVRDPAQSEEVAQEVLLELWRSAARFDPGR 67 Query: 74 GSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDERRRVVEC 133 GS L+W+LT+AHRRAVDRVR+ +A +RE R A D VA+ AG ER V C Sbjct: 68 GSALSWILTLAHRRAVDRVRSARAAGEREQREALRAHHPAFDQVAEEVEAGLEREWVRRC 127 Query: 134 LDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 LD LT QRQ + LAYY G TY EV++RL+ L T+K+RMRD L LRNCL Sbjct: 128 LDRLTALQRQSVTLAYYDGYTYREVAERLSLPLGTVKTRMRDGLTRLRNCL 178 >tr|C4DUZ6|C4DUZ6_9ACTO Tax_Id=446470 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Stackebrandtia nassauensis DSM 44728] Length = 206 Score = 162 bits (410), Expect = 2e-38 Identities = 80/175 (45%), Positives = 114/175 (65%) Query: 13 ALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTASDYDAT 72 ALL++ A G+ DAF + YD RVYGL RVLRD +EE Q++ +E+WRTA+ +D + Sbjct: 31 ALLQRAALGDEDAFTVLYDRLSPRVYGLCLRVLRDPAQAEEVAQDVLVELWRTAARFDPS 90 Query: 73 KGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDERRRVVE 132 +GS L W+ T+ HRRAVDRVR+ QA RE R +NV+ D VA++ + R++ Sbjct: 91 QGSALTWVATLTHRRAVDRVRSTQASRDREHRSAVSNVEPEYDQVAEAVAQRLDMRQLRR 150 Query: 133 CLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCLDAS 187 CL LT+ Q Q + +AYYGG +Y +V+ L + T+KSR+RD L LR+CL+ S Sbjct: 151 CLKTLTELQHQAVTMAYYGGHSYRQVANLLGAAVPTVKSRIRDGLIRLRDCLEVS 205 >tr|B1W331|B1W331_STRGG Tax_Id=455632 SubName: Full=Putative RNA polymerase ECF-subfamily sigma factor;[Streptomyces griseus subsp. griseus] Length = 194 Score = 162 bits (409), Expect = 2e-38 Identities = 87/187 (46%), Positives = 118/187 (63%) Query: 1 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 ++G DL LL ++ARG++DAFA YD V GLV VLRD SEE QE+ + Sbjct: 7 ISGVASAGPDLQELLVRVARGDQDAFAAVYDAVSGPVLGLVRSVLRDPAQSEEVAQEVLV 66 Query: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 EVWRTA + A++GS + W+LT+AH RAVDRVR+ +A + RE + + A D V++ Sbjct: 67 EVWRTAPRFRASRGSAMNWVLTLAHHRAVDRVRSAEAAAAREHKAALLDRTPAFDEVSEQ 126 Query: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL 180 ER +V C+ L++ QR+ + LAYY GLTY EVS+ LA L TIK+R+RD L L Sbjct: 127 VETRLEREQVRRCMRTLSELQRESVTLAYYRGLTYREVSELLAVPLGTIKTRLRDGLIRL 186 Query: 181 RNCLDAS 187 R+CL S Sbjct: 187 RDCLGVS 193 >tr|Q9RD50|Q9RD50_STRCO Tax_Id=1902 SubName: Full=Putative RNA polymerase sigma factor;[Streptomyces coelicolor] Length = 194 Score = 160 bits (405), Expect = 6e-38 Identities = 84/183 (45%), Positives = 113/183 (61%) Query: 5 PGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWR 64 P DL L+R++A G++D+FA YD V G+V VLRD SEE QE+ +EVWR Sbjct: 11 PSSQPDLQQLIREVALGDQDSFAAVYDAVAGSVLGVVRAVLRDQAQSEEVAQEVLVEVWR 70 Query: 65 TASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAG 124 TA Y +G+ + W+LT+AHRRAVDRVR+ +A + R+ R + D V + Sbjct: 71 TAPRYRPERGTVINWVLTLAHRRAVDRVRSVEAAAARDHRAALLDRTPEYDEVTEQVETR 130 Query: 125 DERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 ER +V CL LTD QRQ + LAYY GLTY +V++ LA L T+K+R+RD L LR+CL Sbjct: 131 LEREQVRRCLRTLTDIQRQSVSLAYYRGLTYRQVAEALALPLGTVKTRLRDGLIRLRDCL 190 Query: 185 DAS 187 S Sbjct: 191 GVS 193 >tr|C9NE06|C9NE06_9ACTO Tax_Id=591167 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Streptomyces flavogriseus ATCC 33331] Length = 194 Score = 159 bits (403), Expect = 1e-37 Identities = 85/187 (45%), Positives = 115/187 (61%) Query: 1 MTGPPGRSDDLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYL 60 ++G P L LL Q+ARG++DAF YD V GLV VLRD SEE QE+ + Sbjct: 7 ISGVPSPGPGLQELLVQVARGDQDAFTQVYDQVSGPVLGLVRSVLRDPAQSEEVAQEVLV 66 Query: 61 EVWRTASDYDATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADS 120 EVWRTA Y ++GS + W+LT+AH RAVDRVR+ +A + RE + + D V++ Sbjct: 67 EVWRTAPRYQPSRGSAMNWVLTLAHHRAVDRVRSAEAAAAREHKAALLDRTPDFDEVSEQ 126 Query: 121 AIAGDERRRVVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGL 180 + ER +V CL L++ QR+ + LAYY GLTY EV + L+ L TIK+R+RD L L Sbjct: 127 VESRLEREQVRRCLRTLSELQRESVTLAYYRGLTYREVGELLSVPLGTIKTRLRDGLIRL 186 Query: 181 RNCLDAS 187 R+CL S Sbjct: 187 RDCLGVS 193 >tr|A3TPI8|A3TPI8_9MICO Tax_Id=313589 SubName: Full=RNA polymerase sigma factor;[Janibacter sp. HTCC2649] Length = 182 Score = 159 bits (403), Expect = 1e-37 Identities = 83/178 (46%), Positives = 113/178 (63%) Query: 10 DLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTASDY 69 DL ALL + ARG+ AFA YD T RV+GLV RV+RD SEE TQE +L++WR + + Sbjct: 4 DLGALLTRSARGDEAAFAQLYDATAARVHGLVVRVVRDRAQSEEVTQEAFLDIWRHCTRF 63 Query: 70 DATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDERRR 129 D ++GSPL+W+LT+AHR+AVDRVR+ +A RE Y + D + +++R Sbjct: 64 DPSRGSPLSWMLTIAHRKAVDRVRSAEASKAREVTYETTTTEREHDSTLEEVEVRLDQQR 123 Query: 130 VVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCLDAS 187 V L LT+TQR IELAY GG T+ EV+ L L T K+R+RD L LR+ L+ + Sbjct: 124 VRRALATLTETQRGAIELAYLGGHTHTEVAALLGIPLGTAKTRIRDGLIRLRDTLEVT 181 >tr|B5I304|B5I304_9ACTO Tax_Id=463191 SubName: Full=RNA polymerase sigma factor SigK;[Streptomyces sviceus ATCC 29083] Length = 180 Score = 159 bits (402), Expect = 1e-37 Identities = 84/175 (48%), Positives = 112/175 (64%) Query: 10 DLNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTASDY 69 + + LL +A G++ AF Y V+GLV RV+RD SEE +QE+ LE WR+A+ + Sbjct: 2 EADELLLLVAGGDQMAFEELYGLVAGPVFGLVRRVVRDPAQSEEVSQEVLLETWRSAARF 61 Query: 70 DATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDERRR 129 D +GS L+W+LT+AHRRAVDRVR+ +A +RE R A D V + AG ER Sbjct: 62 DPRRGSALSWILTLAHRRAVDRVRSARAAGEREQREAHRAHHPAFDQVTEEVEAGLEREW 121 Query: 130 VVECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 V CL+ LT+ QRQ + LAYY G TY EV++RL+ L T+K+RMRD L LR CL Sbjct: 122 VRRCLERLTELQRQSVTLAYYDGYTYREVAERLSLPLGTVKTRMRDGLTRLRECL 176 >tr|C7QI83|C7QI83_CATAD Tax_Id=479433 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Catenulispora acidiphila] Length = 194 Score = 158 bits (400), Expect = 2e-37 Identities = 80/174 (45%), Positives = 112/174 (64%) Query: 11 LNALLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTASDYD 70 L L ++A G+R+AF Y V G+ RVLRD +EE QE+ +E+WRTAS +D Sbjct: 17 LETQLHRVALGDREAFDEVYRQLAGPVLGVARRVLRDPAQAEEVAQEVLVEIWRTASRFD 76 Query: 71 ATKGSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDERRRV 130 +GS AW LTMAH RAVDRVR+ A ++RE+R V+ D V ++ A +R RV Sbjct: 77 PNRGSARAWALTMAHARAVDRVRSADAAARREARAAELMVEPPFDEVVEAVEAHLDRERV 136 Query: 131 VECLDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 C++GLT+ QR+ + LAYYGG TY++V+ L + L T+K+R+RD L LR+CL Sbjct: 137 RRCMEGLTELQRESVTLAYYGGYTYSQVAHLLNSPLGTVKTRLRDGLARLRDCL 190 >tr|C8XB72|C8XB72_NAKMY Tax_Id=479431 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Nakamurella multipartita] Length = 210 Score = 158 bits (399), Expect = 3e-37 Identities = 78/171 (45%), Positives = 109/171 (63%) Query: 14 LLRQIARGERDAFAMFYDHTCTRVYGLVARVLRDAGYSEETTQEIYLEVWRTASDYDATK 73 LLR A G DAF YD RV+GL R++RD ++EE QE++LE+WR AS +D K Sbjct: 36 LLRLTALGREDAFERLYDTFSARVFGLARRIVRDPSHAEEIAQEVFLEIWRRASRFDRAK 95 Query: 74 GSPLAWLLTMAHRRAVDRVRAEQAGSQRESRYGAANVDLASDVVADSAIAGDERRRVVEC 133 GS +W+LT+ H RAVDRVR+ QA + RE + ++ + D V ++ + ERR V C Sbjct: 96 GSATSWILTLTHARAVDRVRSAQAATDREIKVAQSSTERDVDTVVEAVESSFERRAVQRC 155 Query: 134 LDGLTDTQRQCIELAYYGGLTYAEVSQRLATNLSTIKSRMRDALRGLRNCL 184 L LT+ QR+ I LAY+ G +Y EV++ L L TIK+R+RD L LR+C+ Sbjct: 156 LGTLTELQRESITLAYFSGYSYREVAELLTAPLPTIKTRLRDGLIRLRDCM 206 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.319 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 1,281,239,234 Number of extensions: 44769558 Number of successful extensions: 137376 Number of sequences better than 10.0: 5752 Number of HSP's gapped: 137500 Number of HSP's successfully gapped: 5752 Length of query: 187 Length of database: 3,846,993,858 Length adjustment: 129 Effective length of query: 58 Effective length of database: 2,392,492,671 Effective search space: 138764574918 Effective search space used: 138764574918 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 76 (33.9 bits)