BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_0956 (587 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HSF5|B2HSF5_MYCMM Tax_Id=216594 (recD)SubName: Full=Exodeox... 972 0.0 tr|A0PLZ2|A0PLZ2_MYCUA Tax_Id=362242 (recD)SubName: Full=Exodeox... 966 0.0 tr|A0QL87|A0QL87_MYCA1 Tax_Id=243243 (recD)SubName: Full=Exodeox... 650 0.0 tr|Q73SI2|Q73SI2_MYCPA Tax_Id=1770 (recD)SubName: Full=RecD;[Myc... 647 0.0 tr|A0QS28|A0QS28_MYCS2 Tax_Id=246196 (recD)SubName: Full=Exodeox... 619 e-175 tr|Q9RPH5|Q9RPH5_MYCSM Tax_Id=1772 (recD)SubName: Full=RecD;[Myc... 619 e-175 tr|B1MFU7|B1MFU7_MYCA9 Tax_Id=561007 SubName: Full=Exodeoxyribon... 611 e-173 tr|A2VFV1|A2VFV1_MYCTU Tax_Id=348776 SubName: Full=Exonuclease V... 603 e-170 sp|P96919|EX5A_MYCTU Tax_Id=1773 (recD)RecName: Full=Exodeoxyrib... 602 e-170 tr|C6DU06|C6DU06_MYCTK Tax_Id=478434 SubName: Full=Exonuclease s... 602 e-170 tr|A5U012|A5U012_MYCTA Tax_Id=419947 (recD)SubName: Full=Putativ... 602 e-170 tr|A5WJZ4|A5WJZ4_MYCTF Tax_Id=336982 SubName: Full=Exonuclease V... 602 e-170 tr|Q7U1L1|Q7U1L1_MYCBO Tax_Id=1765 (recD)SubName: Full=PROBABLE ... 600 e-169 tr|C1AKW0|C1AKW0_MYCBT Tax_Id=561275 (recD)SubName: Full=Putativ... 600 e-169 tr|A1KGA7|A1KGA7_MYCBP Tax_Id=410289 (recD)SubName: Full=Probabl... 600 e-169 tr|A3PUY5|A3PUY5_MYCSJ Tax_Id=164757 SubName: Full=DNA helicase/... 595 e-168 tr|Q1BDM1|Q1BDM1_MYCSS Tax_Id=164756 SubName: Full=DNA helicase/... 588 e-166 tr|A1UBC0|A1UBC0_MYCSK Tax_Id=189918 SubName: Full=DNA helicase/... 588 e-166 tr|A1T4E3|A1T4E3_MYCVP Tax_Id=350058 SubName: Full=DNA helicase/... 586 e-165 tr|A4T1L4|A4T1L4_MYCGI Tax_Id=350054 SubName: Full=DNA helicase/... 574 e-161 tr|C1WNL3|C1WNL3_9ACTO Tax_Id=479435 SubName: Full=Exodeoxyribon... 523 e-146 tr|A1SDB3|A1SDB3_NOCSJ Tax_Id=196162 SubName: Full=DNA helicase/... 439 e-121 tr|A6W6P3|A6W6P3_KINRD Tax_Id=266940 SubName: Full=Exodeoxyribon... 371 e-100 tr|Q5YWP7|Q5YWP7_NOCFA Tax_Id=37329 (recD)SubName: Full=Putative... 369 e-100 tr|C1RHS1|C1RHS1_9CELL Tax_Id=446466 SubName: Full=Exodeoxyribon... 353 3e-95 tr|D0L8X2|D0L8X2_GORB4 Tax_Id=526226 SubName: Full=Exodeoxyribon... 255 1e-65 tr|A8AP32|A8AP32_CITK8 Tax_Id=290338 SubName: Full=Putative unch... 247 4e-63 tr|C2B9P7|C2B9P7_9ENTR Tax_Id=500640 SubName: Full=Putative unch... 244 2e-62 tr|A1BGA2|A1BGA2_CHLPD Tax_Id=290317 SubName: Full=DNA helicase/... 243 5e-62 tr|C1MAZ6|C1MAZ6_9ENTR Tax_Id=469595 SubName: Full=Exonuclease V... 243 7e-62 tr|Q1QYD2|Q1QYD2_CHRSD Tax_Id=290398 SubName: Full=DNA helicase/... 238 1e-60 tr|B4TGP7|B4TGP7_SALHS Tax_Id=454169 (recD)SubName: Full=Exodeox... 238 2e-60 tr|B4T4Y4|B4T4Y4_SALNS Tax_Id=423368 (recD)SubName: Full=Exodeox... 238 2e-60 tr|Q5PEM9|Q5PEM9_SALPA Tax_Id=54388 (recD)SubName: Full=Exonucle... 236 8e-60 tr|B5BFF8|B5BFF8_SALPK Tax_Id=554290 SubName: Full=Exonuclease V... 236 8e-60 tr|Q8Z420|Q8Z420_SALTI Tax_Id=90370 (recD)SubName: Full=Exonucle... 234 2e-59 tr|B5F4T6|B5F4T6_SALA4 Tax_Id=454166 (recD)SubName: Full=Exodeox... 234 2e-59 tr|B4TUL0|B4TUL0_SALSV Tax_Id=439843 (recD)SubName: Full=Exodeox... 234 2e-59 tr|B5RDW9|B5RDW9_SALG2 Tax_Id=550538 (recD)SubName: Full=Exonucl... 233 7e-59 tr|B5QWS5|B5QWS5_SALEP Tax_Id=550537 (recD)SubName: Full=Exonucl... 233 7e-59 tr|B5FTZ4|B5FTZ4_SALDC Tax_Id=439851 (recD)SubName: Full=Exodeox... 233 7e-59 tr|B3ECZ3|B3ECZ3_CHLL2 Tax_Id=290315 SubName: Full=Exodeoxyribon... 232 9e-59 tr|Q8KDI0|Q8KDI0_CHLTE Tax_Id=1097 (recD)SubName: Full=Exodeoxyr... 232 1e-58 tr|Q8X6N0|Q8X6N0_ECO57 Tax_Id=83334 (recD)SubName: Full=DNA heli... 231 2e-58 tr|Q57KC5|Q57KC5_SALCH Tax_Id=28901 (recD)SubName: Full=Exonucle... 231 2e-58 tr|B5Z4D6|B5Z4D6_ECO5E Tax_Id=444450 (recD)SubName: Full=Exodeox... 231 2e-58 tr|Q7AB61|Q7AB61_ECO57 Tax_Id=83334 SubName: Full=DNA helicase R... 231 2e-58 tr|C6USD2|C6USD2_ECO5T Tax_Id=544404 (recD)SubName: Full=Exonucl... 231 2e-58 tr|C3SWN7|C3SWN7_ECOLX Tax_Id=562 SubName: Full=DNA helicase Rec... 231 2e-58 tr|B6ZVZ0|B6ZVZ0_ECO57 Tax_Id=502346 (recD)SubName: Full=Exodeox... 231 2e-58 >tr|B2HSF5|B2HSF5_MYCMM Tax_Id=216594 (recD)SubName: Full=Exodeoxyribonuclease V (Alpha chain), RecD;[Mycobacterium marinum] Length = 587 Score = 972 bits (2512), Expect = 0.0 Identities = 508/587 (86%), Positives = 508/587 (86%) Query: 1 MTIDVVDPADWRQAASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVV 60 MTIDVVDPADWRQAASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVV Sbjct: 1 MTIDVVDPADWRQAASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVV 60 Query: 61 RALRGGSVCVDLSTIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDR 120 RALRGGSVCVDLSTIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDR Sbjct: 61 RALRGGSVCVDLSTIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDR 120 Query: 121 YWREEQQVXXXXXXXXXXXXXXXXXXXEVNRLFPPGYEEQRAAAKIALAQXXXXXXXXXX 180 YWREEQQV EVNRLFPPGYEEQRAAAKIALAQ Sbjct: 121 YWREEQQVADDILALLAARASASGPAIEVNRLFPPGYEEQRAAAKIALAQGLTVLTGGPG 180 Query: 181 XXXXXXXXXXXXXXXXXXXXXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRV 240 GKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRV Sbjct: 181 TGKTTTVARLLALFAEQAQLAGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRV 240 Query: 241 RGLQATTLHRLLGSRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTR 300 RGLQATTLHRLLGSRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTR Sbjct: 241 RGLQATTLHRLLGSRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTR 300 Query: 301 LLLVGDPDQLASVEAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDAD 360 LLLVGDPDQLASVEAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDAD Sbjct: 301 LLLVGDPDQLASVEAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDAD 360 Query: 361 RVVEILRAGDDHIEWINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCA 420 RVVEILRAGDDHIEWINAADPTPQLRNVLLPHALE EQRLLCA Sbjct: 361 RVVEILRAGDDHIEWINAADPTPQLRNVLLPHALELRRAGALGDTAAALATLDEQRLLCA 420 Query: 421 HRRGPYGIAHWNHQVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDG 480 HRRGPYGIAHWNHQVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDG Sbjct: 421 HRRGPYGIAHWNHQVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDG 480 Query: 481 TNRAAAPGALRVLIAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSR 540 TNRAAAPGALRVLIAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSR Sbjct: 481 TNRAAAPGALRVLIAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSR 540 Query: 541 LLTRELFYTAVTRAARKVRIVGPECDVXXXXXXXXXXXTGLRSRLQP 587 LLTRELFYTAVTRAARKVRIVGPECDV TGLRSRLQP Sbjct: 541 LLTRELFYTAVTRAARKVRIVGPECDVRAAIARRAIRATGLRSRLQP 587 >tr|A0PLZ2|A0PLZ2_MYCUA Tax_Id=362242 (recD)SubName: Full=Exodeoxyribonuclease V (Alpha chain), RecD;[Mycobacterium ulcerans] Length = 587 Score = 966 bits (2497), Expect = 0.0 Identities = 505/587 (86%), Positives = 507/587 (86%) Query: 1 MTIDVVDPADWRQAASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVV 60 MTI+VVDPADWRQAASASGPLRTFNEA VIDAADVHVAQRLAAMSGESDPVVLLAIAFVV Sbjct: 1 MTIEVVDPADWRQAASASGPLRTFNEARVIDAADVHVAQRLAAMSGESDPVVLLAIAFVV 60 Query: 61 RALRGGSVCVDLSTIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDR 120 RALRGGSVCVDLSTIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDR Sbjct: 61 RALRGGSVCVDLSTIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDR 120 Query: 121 YWREEQQVXXXXXXXXXXXXXXXXXXXEVNRLFPPGYEEQRAAAKIALAQXXXXXXXXXX 180 YWREEQQV EVNRLFPPGYEEQRAAAKIALAQ Sbjct: 121 YWREEQQVADDILALLAARASASGPAIEVNRLFPPGYEEQRAAAKIALAQGLTVLTGGPG 180 Query: 181 XXXXXXXXXXXXXXXXXXXXXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRV 240 GKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRV Sbjct: 181 TGKTTTVARLLALFAEQAQLAGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRV 240 Query: 241 RGLQATTLHRLLGSRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTR 300 RGLQATTLHRLLGSRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTR Sbjct: 241 RGLQATTLHRLLGSRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTR 300 Query: 301 LLLVGDPDQLASVEAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDAD 360 LLLVGDPDQLASVEAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDAD Sbjct: 301 LLLVGDPDQLASVEAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDAD 360 Query: 361 RVVEILRAGDDHIEWINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCA 420 RVVEILRAGDDHIEWINAADPTPQLRNVLLPHALE EQRLLCA Sbjct: 361 RVVEILRAGDDHIEWINAADPTPQLRNVLLPHALELRRAGALGDTAAALATLDEQRLLCA 420 Query: 421 HRRGPYGIAHWNHQVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDG 480 HRRGPYGIAHWNHQVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDG Sbjct: 421 HRRGPYGIAHWNHQVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDG 480 Query: 481 TNRAAAPGALRVLIAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSR 540 TNRAAAPGALRV+IAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSR Sbjct: 481 TNRAAAPGALRVVIAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSR 540 Query: 541 LLTRELFYTAVTRAARKVRIVGPECDVXXXXXXXXXXXTGLRSRLQP 587 LLTRELFYTAVTRAARKVRIVGPECDV TGLRSRLQP Sbjct: 541 LLTRELFYTAVTRAARKVRIVGPECDVRAAIARRAIRATGLRSRLQP 587 >tr|A0QL87|A0QL87_MYCA1 Tax_Id=243243 (recD)SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Mycobacterium avium] Length = 570 Score = 650 bits (1678), Expect = 0.0 Identities = 347/569 (60%), Positives = 395/569 (69%), Gaps = 10/569 (1%) Query: 18 SGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEA 77 +GPLR F +AG+ +AAD+HVAQRL A++GESD V LA+A +VRALRGGSVCVDL + A Sbjct: 9 AGPLRPFADAGIFEAADIHVAQRLTALTGESDDRVALAVALLVRALRGGSVCVDLRAVPA 68 Query: 78 QVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXX 137 QVG ADLPWPAAG+WLAAVRASPL+G P VLR D L+Y DRYW EE+QV Sbjct: 69 QVGAADLPWPAAGDWLAAVRASPLLGPPPVLRFFGD-LLYFDRYWLEEEQVCTDLLALSA 127 Query: 138 XXXXXXXXXXEVNRLFPPGYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXX 197 E RLFPPGYEEQRAAA+IA++Q Sbjct: 128 PAGDVESSCYE--RLFPPGYEEQRAAARIAVSQALTVLTGGPGTGKTTTVARLLALLVEQ 185 Query: 198 XXXXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLGSRPD 257 G+ R RIALAAPTGKAAARL EAV ++I+ LD D+ R+ GL TTLHRLLG RPD Sbjct: 186 AERAGEPRPRIALAAPTGKAAARLAEAVAAEIEHLDPADRARLAGLTGTTLHRLLGPRPD 245 Query: 258 TSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGA 317 TS RF+H+RGNRLPHD+IV+DETSMVSLTMMARL EAVRP TRL+LVGDPDQLASVEAGA Sbjct: 246 TSVRFKHNRGNRLPHDIIVVDETSMVSLTMMARLAEAVRPDTRLILVGDPDQLASVEAGA 305 Query: 318 VLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHIEWIN 377 VLADLVDGL R VAAL HRFG +IG LAAAIR GDADRVVE+L AG +HIEW++ Sbjct: 306 VLADLVDGLAGRAGVRVAALATPHRFGSAIGALAAAIRAGDADRVVELLAAGGEHIEWVD 365 Query: 378 AADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIAHWNHQVQR 437 + P +LR VL+ HAL E RLLCAHR GP+G WN V Sbjct: 366 SERPADRLREVLVSHALRLRSAALLGAAQAALATLDEHRLLCAHRDGPHGAVRWNTLVHN 425 Query: 438 WLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVLIAGA 497 W+ E TG+P WS WYAGRP+LVTANDYGL +YNGDTGV V A LR +IAGA Sbjct: 426 WIAEETGQPAWSQWYAGRPLLVTANDYGLRLYNGDTGVTV-------AGADGLRAVIAGA 478 Query: 498 QEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTRAARK 557 PL FATSRL +VETMHAMTIHKSQGSQAD+VTVL+PP DSRLLTRELFYTAVTRA + Sbjct: 479 AGPLDFATSRLGEVETMHAMTIHKSQGSQADEVTVLIPPEDSRLLTRELFYTAVTRAKSR 538 Query: 558 VRIVGPECDVXXXXXXXXXXXTGLRSRLQ 586 VR+VGPE V TGLR RL+ Sbjct: 539 VRVVGPEASVRAAIERRAIRATGLRQRLR 567 >tr|Q73SI2|Q73SI2_MYCPA Tax_Id=1770 (recD)SubName: Full=RecD;[Mycobacterium paratuberculosis] Length = 574 Score = 647 bits (1668), Expect = 0.0 Identities = 346/569 (60%), Positives = 394/569 (69%), Gaps = 10/569 (1%) Query: 18 SGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEA 77 +GPLR F +AG+ +AADV VAQRL A++GESD V LA+A +VRALRGGSVCVDL + A Sbjct: 13 AGPLRPFADAGIFEAADVRVAQRLTALTGESDDRVALAVALLVRALRGGSVCVDLRAVPA 72 Query: 78 QVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXX 137 QVG ADLPWPAAG+WLAAVRASPL+G P VLR D L+Y DRYW EE+QV Sbjct: 73 QVGAADLPWPAAGDWLAAVRASPLLGPPPVLRFFGD-LLYFDRYWLEEEQVCTDLLALSA 131 Query: 138 XXXXXXXXXXEVNRLFPPGYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXX 197 E RLFPPGYEEQRAAA+IA++Q Sbjct: 132 PAGDVESSCYE--RLFPPGYEEQRAAARIAVSQALTVLTGGPGTGKTTTVARLLALLVEQ 189 Query: 198 XXXXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLGSRPD 257 G+ R RIALAAPTGKAAARL EAV ++I+ LD D+ R+ GL TTLHRLLG RPD Sbjct: 190 AERAGEPRPRIALAAPTGKAAARLAEAVAAEIEHLDPADRARLAGLTGTTLHRLLGPRPD 249 Query: 258 TSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGA 317 TS RF+H+RGNRLPHD+IV+DETSMVSLTMMARL EAVRP TRL+LVGDPDQLASVEAGA Sbjct: 250 TSVRFKHNRGNRLPHDIIVVDETSMVSLTMMARLAEAVRPDTRLILVGDPDQLASVEAGA 309 Query: 318 VLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHIEWIN 377 VLADLVDGL R VAAL HRFG +IG LAAAIR GDADRV+E+L AG +HIEW++ Sbjct: 310 VLADLVDGLAGRAGVRVAALATPHRFGSAIGALAAAIRAGDADRVLELLAAGGEHIEWVD 369 Query: 378 AADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIAHWNHQVQR 437 + P +LR VL+ HAL E RLLCAHR GP+G WN V Sbjct: 370 SERPADRLREVLVSHALRLRSAALLGAAQAALATLDEHRLLCAHRDGPHGAVRWNTLVHN 429 Query: 438 WLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVLIAGA 497 W+ E TG+P WS WYAGRP+LVTANDYGL +YNGDTGV V A LR +IAGA Sbjct: 430 WIAEETGQPAWSQWYAGRPLLVTANDYGLRLYNGDTGVTV-------AGADGLRAVIAGA 482 Query: 498 QEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTRAARK 557 PL FATSRL +VETMHAMTIHKSQGSQAD+VTVL+PP DSRLLTRELFYTAVTRA + Sbjct: 483 AGPLDFATSRLGEVETMHAMTIHKSQGSQADEVTVLIPPEDSRLLTRELFYTAVTRAKSR 542 Query: 558 VRIVGPECDVXXXXXXXXXXXTGLRSRLQ 586 VR+VGPE V TGLR RL+ Sbjct: 543 VRVVGPEASVRAAIERRAIRATGLRQRLR 571 >tr|A0QS28|A0QS28_MYCS2 Tax_Id=246196 (recD)SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Mycobacterium smegmatis] Length = 554 Score = 619 bits (1595), Expect = e-175 Identities = 338/561 (60%), Positives = 387/561 (68%), Gaps = 17/561 (3%) Query: 27 AGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEAQVGIADLPW 86 A +++ ADVHVAQRL ++ E D V LA+A VRALRGGSVCVDL ++ QV + DLPW Sbjct: 8 AEILEPADVHVAQRLTVLADEPDASVELAVALAVRALRGGSVCVDLRSVAGQVELPDLPW 67 Query: 87 PAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXX 146 P WLAA+ ASPL+G P VLRL D L+YLDRYW EEQQV Sbjct: 68 PDPDAWLAALAASPLLGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVP- 125 Query: 147 XEVNRLFPPGYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKARL 206 +V+RLF G+EEQRAAAK+AL+Q GK Sbjct: 126 -DVSRLFGAGFEEQRAAAKVALSQGLTVLTGGPGTGKTTTVARLLALLAEQAALAGKPSP 184 Query: 207 RIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLGSRPDTSSRFRHHR 266 RIALAAPTGKAAARL EAVQ +ID+LD I+++R+ GL ATTLHRLLG RPDTSSRFRHHR Sbjct: 185 RIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHR 244 Query: 267 GNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADLVDGL 326 NRLPHDVIV+DETSMVSLTMMARLLEAVRPQTRL+LVGDPDQLASVEAGAVLADLV+GL Sbjct: 245 ANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGL 304 Query: 327 GARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHIEWINAADPTPQLR 386 G+R VA L+ HRFGESIG LA+AIR GDAD + +L AG +HIEW++ DP QLR Sbjct: 305 GSR---GVAELKTSHRFGESIGALASAIRTGDADAALAVLAAGGEHIEWVH-EDPVEQLR 360 Query: 387 NVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIAHWNHQVQRWLTEATGEP 446 V++PHA+ E RLLCAHRRGP G+ HWN QVQRWL E TGEP Sbjct: 361 EVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEP 420 Query: 447 IWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLKFATS 506 +W SWY GRP+LVTANDYGL +YNGDTGV V A P +R +I A FAT Sbjct: 421 LWGSWYVGRPILVTANDYGLKLYNGDTGVVV-------ATPDGMRAVIGDAG---TFATG 470 Query: 507 RLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPECD 566 RL+DVETMHAMTIHKSQGSQAD+VTVLLP DSRLLTRELFYTAVTRA +VR+VG E + Sbjct: 471 RLTDVETMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFYTAVTRAKTRVRVVGAEAE 530 Query: 567 VXXXXXXXXXXXTGLRSRLQP 587 V TGLR RL+P Sbjct: 531 VRAAIERQAVRATGLRKRLRP 551 >tr|Q9RPH5|Q9RPH5_MYCSM Tax_Id=1772 (recD)SubName: Full=RecD;[Mycobacterium smegmatis] Length = 554 Score = 619 bits (1595), Expect = e-175 Identities = 338/561 (60%), Positives = 387/561 (68%), Gaps = 17/561 (3%) Query: 27 AGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEAQVGIADLPW 86 A +++ ADVHVAQRL ++ E D V LA+A VRALRGGSVCVDL ++ QV + DLPW Sbjct: 8 AEILEPADVHVAQRLTVLADEPDASVELAVALAVRALRGGSVCVDLRSVAGQVELPDLPW 67 Query: 87 PAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXX 146 P WLAA+ ASPL+G P VLRL D L+YLDRYW EEQQV Sbjct: 68 PDPDAWLAALAASPLLGQPPVLRLFGD-LLYLDRYWLEEQQVCDDVLALVSARPGGAVP- 125 Query: 147 XEVNRLFPPGYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKARL 206 +V+RLF G+EEQRAAAK+AL+Q GK Sbjct: 126 -DVSRLFGAGFEEQRAAAKVALSQGLTVLTGGPGTGKTTTVARLLALLAEQAALAGKPSP 184 Query: 207 RIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLGSRPDTSSRFRHHR 266 RIALAAPTGKAAARL EAVQ +ID+LD I+++R+ GL ATTLHRLLG RPDTSSRFRHHR Sbjct: 185 RIALAAPTGKAAARLQEAVQLEIDQLDLIERRRLTGLHATTLHRLLGPRPDTSSRFRHHR 244 Query: 267 GNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADLVDGL 326 NRLPHDVIV+DETSMVSLTMMARLLEAVRPQTRL+LVGDPDQLASVEAGAVLADLV+GL Sbjct: 245 ANRLPHDVIVVDETSMVSLTMMARLLEAVRPQTRLVLVGDPDQLASVEAGAVLADLVEGL 304 Query: 327 GARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHIEWINAADPTPQLR 386 G+R VA L+ HRFGESIG LA+AIR GDAD + +L AG +HIEW++ DP QLR Sbjct: 305 GSR---GVAELKTSHRFGESIGALASAIRTGDADAALAVLAAGGEHIEWVH-EDPVEQLR 360 Query: 387 NVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIAHWNHQVQRWLTEATGEP 446 V++PHA+ E RLLCAHRRGP G+ HWN QVQRWL E TGEP Sbjct: 361 EVVVPHAMRLRQAAILGDQREALATLDEHRLLCAHRRGPAGVDHWNRQVQRWLGEETGEP 420 Query: 447 IWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLKFATS 506 +W SWY GRP+LVTANDYGL +YNGDTGV V A P +R +I A FAT Sbjct: 421 LWGSWYVGRPILVTANDYGLKLYNGDTGVVV-------ATPDGMRAVIGDAG---TFATG 470 Query: 507 RLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPECD 566 RL+DVETMHAMTIHKSQGSQAD+VTVLLP DSRLLTRELFYTAVTRA +VR+VG E + Sbjct: 471 RLTDVETMHAMTIHKSQGSQADEVTVLLPSEDSRLLTRELFYTAVTRAKTRVRVVGAEAE 530 Query: 567 VXXXXXXXXXXXTGLRSRLQP 587 V TGLR RL+P Sbjct: 531 VRAAIERQAVRATGLRKRLRP 551 >tr|B1MFU7|B1MFU7_MYCA9 Tax_Id=561007 SubName: Full=Exodeoxyribonuclease V, alpha subunit (RecD);[Mycobacterium abscessus] Length = 552 Score = 611 bits (1576), Expect = e-173 Identities = 335/558 (60%), Positives = 385/558 (68%), Gaps = 19/558 (3%) Query: 29 VIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEAQVGIADLPWPA 88 +++ ADVHVAQRL A++ E+D V LAIA VRALRGGSVCVDL + AQV + LPWPA Sbjct: 10 ILEPADVHVAQRLTALASETDESVELAIALAVRALRGGSVCVDLRAVAAQVDMPSLPWPA 69 Query: 89 AGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXXXE 148 A +WLAAVRASPL G P VLRL D L+YLDRYWREEQQV Sbjct: 70 ADDWLAAVRASPLAGEPPVLRLFGD-LLYLDRYWREEQQVCTDVQALMAAAQPRTEVPT- 127 Query: 149 VNRLFPPGYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKARLRI 208 RLFP G+EEQRAAA IAL+Q A LRI Sbjct: 128 YERLFPQGFEEQRAAADIALSQGLTVLTGGPGTGKTTTVARLLALLADQASSASAAPLRI 187 Query: 209 ALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLGSRPDTSSRFRHHRGN 268 ALAAPTGKAAARL EAVQ ++++LDA+D+ R+ GLQATTLHRLLGSRPDTSSRF+H RGN Sbjct: 188 ALAAPTGKAAARLQEAVQLEVNQLDAVDRSRLAGLQATTLHRLLGSRPDTSSRFKHDRGN 247 Query: 269 RLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADLVDGLGA 328 RLPHDVIV+DETSMVSLTMMARLLEAVRPQ RLLLVGDPDQLASVEAGAVLADLV+GL Sbjct: 248 RLPHDVIVVDETSMVSLTMMARLLEAVRPQARLLLVGDPDQLASVEAGAVLADLVEGL-- 305 Query: 329 RHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHIEWINAADPTPQLRNV 388 VAALR HRFG +IG LAAA+R GDADR +E+L +GD H+EW + + LR+V Sbjct: 306 -ESERVAALRTSHRFGAAIGALAAAVRDGDADRALEVLASGDPHVEW---STDSEGLRDV 361 Query: 389 LLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIAHWNHQVQRWLTEATGEPIW 448 L+P AL E R+LCAHR GP+G+ HWN QV+RW+TE TGEP W Sbjct: 362 LVPQALALRAASLSGDATAALAVLDEHRMLCAHRHGPFGVTHWNRQVERWITEETGEPHW 421 Query: 449 SSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLKFATSRL 508 + WYAGRP+LVTANDYGL +YNGDTGV V A P LR +I A FATSRL Sbjct: 422 APWYAGRPILVTANDYGLRLYNGDTGVTV-------AGPDGLRAVIGAA----SFATSRL 470 Query: 509 SDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPECDVX 568 +VETMHAMTIHKSQGSQA++VTVLLP DSRLLTRELFYTAVTRA ++VR+VG E +V Sbjct: 471 VEVETMHAMTIHKSQGSQANEVTVLLPSEDSRLLTRELFYTAVTRAKQRVRVVGSEAEVR 530 Query: 569 XXXXXXXXXXTGLRSRLQ 586 +GL RL+ Sbjct: 531 AAIQRQAVRASGLGRRLR 548 >tr|A2VFV1|A2VFV1_MYCTU Tax_Id=348776 SubName: Full=Exonuclease V (Alpha chain) recD;[Mycobacterium tuberculosis C] Length = 637 Score = 603 bits (1555), Expect = e-170 Identities = 330/582 (56%), Positives = 386/582 (66%), Gaps = 11/582 (1%) Query: 5 VVDPADWRQAASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALR 64 VV D A ASG +R FN+AGV+D +DVHVAQRL A++GESD V LA+A VRALR Sbjct: 62 VVKLTDVDFAVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALR 121 Query: 65 GGSVCVDLSTIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWRE 124 GSVCVDL +I G DLPWP +WLAAVRASPL+ P VL L++D L+YLDRYWRE Sbjct: 122 AGSVCVDLLSIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWRE 181 Query: 125 EQQVXXXXXXXXXXXXXXXXXXXEVNRLFPPGYEEQRAAAKIALAQXXXXXXXXXXXXXX 184 E+QV ++ RLFP G++EQR AA+IAL+Q Sbjct: 182 EEQVCADLLALLTSRRPAGVP--DLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKT 239 Query: 185 XXXXXXXXXXXXXXXXXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ 244 G+ R RIALAAPTGKAAARL EAV+ ++ KLDA D+ R+ L Sbjct: 240 TTVARLLALVAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLH 299 Query: 245 ATTLHRLLGSRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLV 304 A TLHRLLG++P +RFR R NRLPH+VIV+DETSMVSLT+MARL EAVRP RL+LV Sbjct: 300 AVTLHRLLGAKP--GARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILV 357 Query: 305 GDPDQLASVEAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVE 364 GD DQLASVEAGAVLADLVDG R D VA LR HRFG+ IG LA AIR GD D V+ Sbjct: 358 GDADQLASVEAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLG 417 Query: 365 ILRAGDDHIEWINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRG 424 +LR+G++ IE+++ DP P+LR VL+PHAL E RLLCAHR G Sbjct: 418 LLRSGEERIEFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDG 477 Query: 425 PYGIAHWNHQVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRA 484 P G+ HWN +VQ WL E TG+P W+ WYAGRP+LVTANDYGL VYNGDTGV + Sbjct: 478 PTGVLHWNRRVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVL------- 530 Query: 485 AAPGALRVLIAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTR 544 A P LR +I+GA PL AT RL DVETMHAMTIHKSQGSQ D+VTVL+P DSRLLTR Sbjct: 531 AGPTGLRAVISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTR 590 Query: 545 ELFYTAVTRAARKVRIVGPECDVXXXXXXXXXXXTGLRSRLQ 586 EL YTAVTRA RKVR+VG E V +GLR RLQ Sbjct: 591 ELLYTAVTRAKRKVRVVGSEASVRAAIARRAVRASGLRMRLQ 632 >sp|P96919|EX5A_MYCTU Tax_Id=1773 (recD)RecName: Full=Exodeoxyribonuclease V alpha chain; EC=3.1.11.5; AltName: Full=Exodeoxyribonuclease V 67 kDa polypeptide;[Mycobacterium tuberculosis] Length = 575 Score = 602 bits (1553), Expect = e-170 Identities = 327/573 (57%), Positives = 383/573 (66%), Gaps = 11/573 (1%) Query: 14 AASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS 73 A ASG +R FN+AGV+D +DVHVAQRL A++GESD V LA+A VRALR GSVCVDL Sbjct: 9 AVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLL 68 Query: 74 TIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVXXXXX 133 +I G DLPWP +WLAAVRASPL+ P VL L++D L+YLDRYWREE+QV Sbjct: 69 SIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLL 128 Query: 134 XXXXXXXXXXXXXXEVNRLFPPGYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXX 193 ++ RLFP G++EQR AA+IAL+Q Sbjct: 129 ALLTSRRPAGVP--DLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLAL 186 Query: 194 XXXXXXXXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLG 253 G+ R RIALAAPTGKAAARL EAV+ ++ KLDA D+ R+ L A TLHRLLG Sbjct: 187 VAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLG 246 Query: 254 SRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASV 313 ++P +RFR R NRLPH+VIV+DETSMVSLT+MARL EAVRP RL+LVGD DQLASV Sbjct: 247 AKP--GARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASV 304 Query: 314 EAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHI 373 EAGAVLADLVDG R D VA LR HRFG+ IG LA AIR GD D V+ +LR+G++ I Sbjct: 305 EAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERI 364 Query: 374 EWINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIAHWNH 433 E+++ DP P+LR VL+PHAL E RLLCAHR GP G+ HWN Sbjct: 365 EFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNR 424 Query: 434 QVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVL 493 +VQ WL E TG+P W+ WYAGRP+LVTANDYGL VYNGDTGV + A P LR + Sbjct: 425 RVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVL-------AGPTGLRAV 477 Query: 494 IAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTR 553 I+GA PL AT RL DVETMHAMTIHKSQGSQ D+VTVL+P DSRLLTREL YTAVTR Sbjct: 478 ISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTR 537 Query: 554 AARKVRIVGPECDVXXXXXXXXXXXTGLRSRLQ 586 A RKVR+VG E V +GLR RLQ Sbjct: 538 AKRKVRVVGSEASVRAAIARRAVRASGLRMRLQ 570 >tr|C6DU06|C6DU06_MYCTK Tax_Id=478434 SubName: Full=Exonuclease subunit V alpha recD;[Mycobacterium tuberculosis] Length = 575 Score = 602 bits (1553), Expect = e-170 Identities = 327/573 (57%), Positives = 383/573 (66%), Gaps = 11/573 (1%) Query: 14 AASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS 73 A ASG +R FN+AGV+D +DVHVAQRL A++GESD V LA+A VRALR GSVCVDL Sbjct: 9 AVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLL 68 Query: 74 TIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVXXXXX 133 +I G DLPWP +WLAAVRASPL+ P VL L++D L+YLDRYWREE+QV Sbjct: 69 SIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLL 128 Query: 134 XXXXXXXXXXXXXXEVNRLFPPGYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXX 193 ++ RLFP G++EQR AA+IAL+Q Sbjct: 129 ALLTSRRPAGVP--DLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLAL 186 Query: 194 XXXXXXXXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLG 253 G+ R RIALAAPTGKAAARL EAV+ ++ KLDA D+ R+ L A TLHRLLG Sbjct: 187 VAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLG 246 Query: 254 SRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASV 313 ++P +RFR R NRLPH+VIV+DETSMVSLT+MARL EAVRP RL+LVGD DQLASV Sbjct: 247 AKP--GARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASV 304 Query: 314 EAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHI 373 EAGAVLADLVDG R D VA LR HRFG+ IG LA AIR GD D V+ +LR+G++ I Sbjct: 305 EAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERI 364 Query: 374 EWINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIAHWNH 433 E+++ DP P+LR VL+PHAL E RLLCAHR GP G+ HWN Sbjct: 365 EFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNR 424 Query: 434 QVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVL 493 +VQ WL E TG+P W+ WYAGRP+LVTANDYGL VYNGDTGV + A P LR + Sbjct: 425 RVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVL-------AGPTGLRAV 477 Query: 494 IAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTR 553 I+GA PL AT RL DVETMHAMTIHKSQGSQ D+VTVL+P DSRLLTREL YTAVTR Sbjct: 478 ISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTR 537 Query: 554 AARKVRIVGPECDVXXXXXXXXXXXTGLRSRLQ 586 A RKVR+VG E V +GLR RLQ Sbjct: 538 AKRKVRVVGSEASVRAAIARRAVRASGLRMRLQ 570 >tr|A5U012|A5U012_MYCTA Tax_Id=419947 (recD)SubName: Full=Putative exonuclease V alpha chain;[Mycobacterium tuberculosis] Length = 575 Score = 602 bits (1553), Expect = e-170 Identities = 327/573 (57%), Positives = 383/573 (66%), Gaps = 11/573 (1%) Query: 14 AASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS 73 A ASG +R FN+AGV+D +DVHVAQRL A++GESD V LA+A VRALR GSVCVDL Sbjct: 9 AVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLL 68 Query: 74 TIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVXXXXX 133 +I G DLPWP +WLAAVRASPL+ P VL L++D L+YLDRYWREE+QV Sbjct: 69 SIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLL 128 Query: 134 XXXXXXXXXXXXXXEVNRLFPPGYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXX 193 ++ RLFP G++EQR AA+IAL+Q Sbjct: 129 ALLTSRRPAGVP--DLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLAL 186 Query: 194 XXXXXXXXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLG 253 G+ R RIALAAPTGKAAARL EAV+ ++ KLDA D+ R+ L A TLHRLLG Sbjct: 187 VAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLG 246 Query: 254 SRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASV 313 ++P +RFR R NRLPH+VIV+DETSMVSLT+MARL EAVRP RL+LVGD DQLASV Sbjct: 247 AKP--GARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASV 304 Query: 314 EAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHI 373 EAGAVLADLVDG R D VA LR HRFG+ IG LA AIR GD D V+ +LR+G++ I Sbjct: 305 EAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERI 364 Query: 374 EWINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIAHWNH 433 E+++ DP P+LR VL+PHAL E RLLCAHR GP G+ HWN Sbjct: 365 EFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNR 424 Query: 434 QVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVL 493 +VQ WL E TG+P W+ WYAGRP+LVTANDYGL VYNGDTGV + A P LR + Sbjct: 425 RVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVL-------AGPTGLRAV 477 Query: 494 IAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTR 553 I+GA PL AT RL DVETMHAMTIHKSQGSQ D+VTVL+P DSRLLTREL YTAVTR Sbjct: 478 ISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTR 537 Query: 554 AARKVRIVGPECDVXXXXXXXXXXXTGLRSRLQ 586 A RKVR+VG E V +GLR RLQ Sbjct: 538 AKRKVRVVGSEASVRAAIARRAVRASGLRMRLQ 570 >tr|A5WJZ4|A5WJZ4_MYCTF Tax_Id=336982 SubName: Full=Exonuclease V alpha subunit recD;[Mycobacterium tuberculosis] Length = 575 Score = 602 bits (1553), Expect = e-170 Identities = 327/573 (57%), Positives = 383/573 (66%), Gaps = 11/573 (1%) Query: 14 AASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS 73 A ASG +R FN+AGV+D +DVHVAQRL A++GESD V LA+A VRALR GSVCVDL Sbjct: 9 AVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLL 68 Query: 74 TIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVXXXXX 133 +I G DLPWP +WLAAVRASPL+ P VL L++D L+YLDRYWREE+QV Sbjct: 69 SIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLL 128 Query: 134 XXXXXXXXXXXXXXEVNRLFPPGYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXX 193 ++ RLFP G++EQR AA+IAL+Q Sbjct: 129 ALLTSRRPAGVP--DLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLAL 186 Query: 194 XXXXXXXXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLG 253 G+ R RIALAAPTGKAAARL EAV+ ++ KLDA D+ R+ L A TLHRLLG Sbjct: 187 VAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLG 246 Query: 254 SRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASV 313 ++P +RFR R NRLPH+VIV+DETSMVSLT+MARL EAVRP RL+LVGD DQLASV Sbjct: 247 AKP--GARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASV 304 Query: 314 EAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHI 373 EAGAVLADLVDG R D VA LR HRFG+ IG LA AIR GD D V+ +LR+G++ I Sbjct: 305 EAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERI 364 Query: 374 EWINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIAHWNH 433 E+++ DP P+LR VL+PHAL E RLLCAHR GP G+ HWN Sbjct: 365 EFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNR 424 Query: 434 QVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVL 493 +VQ WL E TG+P W+ WYAGRP+LVTANDYGL VYNGDTGV + A P LR + Sbjct: 425 RVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVL-------AGPTGLRAV 477 Query: 494 IAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTR 553 I+GA PL AT RL DVETMHAMTIHKSQGSQ D+VTVL+P DSRLLTREL YTAVTR Sbjct: 478 ISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVTR 537 Query: 554 AARKVRIVGPECDVXXXXXXXXXXXTGLRSRLQ 586 A RKVR+VG E V +GLR RLQ Sbjct: 538 AKRKVRVVGSEASVRAAIARRAVRASGLRMRLQ 570 >tr|Q7U1L1|Q7U1L1_MYCBO Tax_Id=1765 (recD)SubName: Full=PROBABLE EXONUCLEASE V (ALPHA CHAIN) RECD (EXODEOXYRIBONUCLEASE V ALPHA CHAIN) (EXODEOXYRIBONUCLEASE V POLYPEPTIDE); EC=3.1.11.5;[Mycobacterium bovis] Length = 575 Score = 600 bits (1548), Expect = e-169 Identities = 326/573 (56%), Positives = 382/573 (66%), Gaps = 11/573 (1%) Query: 14 AASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS 73 A ASG +R FN+AGV+D +DVHVAQRL A++GESD V LA+A VRALR GSVCVDL Sbjct: 9 AVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLL 68 Query: 74 TIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVXXXXX 133 +I G DLPWP +WLAAVRASPL+ P VL L++D L+YLDRYWREE+QV Sbjct: 69 SIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLL 128 Query: 134 XXXXXXXXXXXXXXEVNRLFPPGYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXX 193 ++ RLFP G++EQR AA+IAL+Q Sbjct: 129 ALLTSRRPAGVP--DLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLAL 186 Query: 194 XXXXXXXXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLG 253 G+ R RIALAAPTGKAAARL EAV+ ++ KLDA D+ R+ L A TLHRLLG Sbjct: 187 VAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLG 246 Query: 254 SRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASV 313 ++P +RFR R NRLPH+VIV+DETSMVSLT+MARL EAVRP RL+LVGD DQLASV Sbjct: 247 AKP--GARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASV 304 Query: 314 EAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHI 373 EAGAVLADLVDG R D VA LR HRFG+ IG LA AIR GD D V+ +LR+G++ I Sbjct: 305 EAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERI 364 Query: 374 EWINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIAHWNH 433 E+++ DP P+LR VL+PHAL E RLLCAHR GP G+ HWN Sbjct: 365 EFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNR 424 Query: 434 QVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVL 493 +VQ WL E TG+P W+ WYAGRP+LVTANDYGL VYNGDTGV + A P LR + Sbjct: 425 RVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVL-------AGPTGLRAV 477 Query: 494 IAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTR 553 I+GA PL AT RL DVETMHAMTIHKSQGSQ D+VTVL+P DSRLLTREL YTAV R Sbjct: 478 ISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVAR 537 Query: 554 AARKVRIVGPECDVXXXXXXXXXXXTGLRSRLQ 586 A RKVR+VG E V +GLR RLQ Sbjct: 538 AKRKVRVVGSEASVRAAIARRAVRASGLRMRLQ 570 >tr|C1AKW0|C1AKW0_MYCBT Tax_Id=561275 (recD)SubName: Full=Putative exonuclease V alpha chain; EC=3.1.11.5;[Mycobacterium bovis] Length = 575 Score = 600 bits (1548), Expect = e-169 Identities = 326/573 (56%), Positives = 382/573 (66%), Gaps = 11/573 (1%) Query: 14 AASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS 73 A ASG +R FN+AGV+D +DVHVAQRL A++GESD V LA+A VRALR GSVCVDL Sbjct: 9 AVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLL 68 Query: 74 TIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVXXXXX 133 +I G DLPWP +WLAAVRASPL+ P VL L++D L+YLDRYWREE+QV Sbjct: 69 SIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLL 128 Query: 134 XXXXXXXXXXXXXXEVNRLFPPGYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXX 193 ++ RLFP G++EQR AA+IAL+Q Sbjct: 129 ALLTSRRPAGVP--DLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLAL 186 Query: 194 XXXXXXXXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLG 253 G+ R RIALAAPTGKAAARL EAV+ ++ KLDA D+ R+ L A TLHRLLG Sbjct: 187 VAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLG 246 Query: 254 SRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASV 313 ++P +RFR R NRLPH+VIV+DETSMVSLT+MARL EAVRP RL+LVGD DQLASV Sbjct: 247 AKP--GARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASV 304 Query: 314 EAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHI 373 EAGAVLADLVDG R D VA LR HRFG+ IG LA AIR GD D V+ +LR+G++ I Sbjct: 305 EAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERI 364 Query: 374 EWINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIAHWNH 433 E+++ DP P+LR VL+PHAL E RLLCAHR GP G+ HWN Sbjct: 365 EFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNR 424 Query: 434 QVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVL 493 +VQ WL E TG+P W+ WYAGRP+LVTANDYGL VYNGDTGV + A P LR + Sbjct: 425 RVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVL-------AGPTGLRAV 477 Query: 494 IAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTR 553 I+GA PL AT RL DVETMHAMTIHKSQGSQ D+VTVL+P DSRLLTREL YTAV R Sbjct: 478 ISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVAR 537 Query: 554 AARKVRIVGPECDVXXXXXXXXXXXTGLRSRLQ 586 A RKVR+VG E V +GLR RLQ Sbjct: 538 AKRKVRVVGSEASVRAAIARRAVRASGLRMRLQ 570 >tr|A1KGA7|A1KGA7_MYCBP Tax_Id=410289 (recD)SubName: Full=Probable exonuclease V (Alpha chain) recD; EC=3.1.11.5;[Mycobacterium bovis] Length = 575 Score = 600 bits (1548), Expect = e-169 Identities = 326/573 (56%), Positives = 382/573 (66%), Gaps = 11/573 (1%) Query: 14 AASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS 73 A ASG +R FN+AGV+D +DVHVAQRL A++GESD V LA+A VRALR GSVCVDL Sbjct: 9 AVEASGMVRAFNQAGVLDVSDVHVAQRLCALAGESDERVALAVAVAVRALRAGSVCVDLL 68 Query: 74 TIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVXXXXX 133 +I G DLPWP +WLAAVRASPL+ P VL L++D L+YLDRYWREE+QV Sbjct: 69 SIARVAGHDDLPWPDPADWLAAVRASPLLADPPVLHLYDDRLLYLDRYWREEEQVCADLL 128 Query: 134 XXXXXXXXXXXXXXEVNRLFPPGYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXX 193 ++ RLFP G++EQR AA+IAL+Q Sbjct: 129 ALLTSRRPAGVP--DLRRLFPTGFDEQRRAAEIALSQGVTVLTGGPGTGKTTTVARLLAL 186 Query: 194 XXXXXXXXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLG 253 G+ R RIALAAPTGKAAARL EAV+ ++ KLDA D+ R+ L A TLHRLLG Sbjct: 187 VAEQAELAGEPRPRIALAAPTGKAAARLAEAVRREMAKLDATDRARLGDLHAVTLHRLLG 246 Query: 254 SRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASV 313 ++P +RFR R NRLPH+VIV+DETSMVSLT+MARL EAVRP RL+LVGD DQLASV Sbjct: 247 AKP--GARFRQDRQNRLPHNVIVVDETSMVSLTLMARLAEAVRPGARLILVGDADQLASV 304 Query: 314 EAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHI 373 EAGAVLADLVDG R D VA LR HRFG+ IG LA AIR GD D V+ +LR+G++ I Sbjct: 305 EAGAVLADLVDGFSVRDDALVAQLRTSHRFGKVIGTLAEAIRAGDGDAVLGLLRSGEERI 364 Query: 374 EWINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIAHWNH 433 E+++ DP P+LR VL+PHAL E RLLCAHR GP G+ HWN Sbjct: 365 EFVDDEDPAPRLRAVLVPHALRLREAALLGASDVALATLDEHRLLCAHRDGPTGVLHWNR 424 Query: 434 QVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVL 493 +VQ WL E TG+P W+ WYAGRP+LVTANDYGL VYNGDTGV + A P LR + Sbjct: 425 RVQAWLAEETGQPPWTPWYAGRPLLVTANDYGLRVYNGDTGVVL-------AGPTGLRAV 477 Query: 494 IAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTR 553 I+GA PL AT RL DVETMHAMTIHKSQGSQ D+VTVL+P DSRLLTREL YTAV R Sbjct: 478 ISGASGPLDVATGRLGDVETMHAMTIHKSQGSQVDEVTVLMPQEDSRLLTRELLYTAVAR 537 Query: 554 AARKVRIVGPECDVXXXXXXXXXXXTGLRSRLQ 586 A RKVR+VG E V +GLR RLQ Sbjct: 538 AKRKVRVVGSEASVRAAIARRAVRASGLRMRLQ 570 >tr|A3PUY5|A3PUY5_MYCSJ Tax_Id=164757 SubName: Full=DNA helicase/exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Mycobacterium sp.] Length = 580 Score = 595 bits (1533), Expect = e-168 Identities = 329/576 (57%), Positives = 380/576 (65%), Gaps = 13/576 (2%) Query: 14 AASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS 73 A + +G LR F +A V + ADVHVA+RL M+ E D V LA+AF VRALR GSVCVDL Sbjct: 5 ALAVTGSLRAFTDAEVFEPADVHVARRLTVMAKEPDESVALAVAFAVRALRNGSVCVDLR 64 Query: 74 TIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDN---LVYLDRYWREEQQVXX 130 + QVG+ DLPWP WL AVRASPL G+P VLRL+ + L+YLDRYWREEQQV Sbjct: 65 AVADQVGLPDLPWPDPEAWLTAVRASPLTGTPPVLRLYSGSSGDLLYLDRYWREEQQVCD 124 Query: 131 XXXXXXXXXXXXXXXXXEVNRLFPPG-YEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXX 189 ++RLFP + EQR AA+IAL+Q Sbjct: 125 DVLALLESSPPGAVPG--LDRLFPTADFPEQRVAAEIALSQSLTVLTGGPGTGKTTTVAR 182 Query: 190 XXXXXXXXXXXXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLH 249 + LRIALAAPTGKAAARL EAV QI LDA+D+ R+ L A+TLH Sbjct: 183 LLALLAEQASLQNRPPLRIALAAPTGKAAARLLEAVHLQIAGLDAVDRDRLPELTASTLH 242 Query: 250 RLLGSRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQ 309 RLL R D +SRFRHHR NRLPHDVIV+DETSMVSLT+MARLLEAVRP +RLLLVGD DQ Sbjct: 243 RLLQRRRDNASRFRHHRENRLPHDVIVVDETSMVSLTLMARLLEAVRPDSRLLLVGDADQ 302 Query: 310 LASVEAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAG 369 LASVEAGAVLADLVDGLGAR D +A L HRFG IG LA AIR G+ D V+ +LR G Sbjct: 303 LASVEAGAVLADLVDGLGARDDVRIARLVTSHRFGAPIGALAKAIRDGETDTVIGLLRDG 362 Query: 370 DDHIEWINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIA 429 IEW + +P +LR VL+PHAL E RLLCAHRRGPYG+ Sbjct: 363 GPDIEWFDTDNPADRLRKVLVPHALRLREAAILGDGPAALATLDEHRLLCAHRRGPYGVR 422 Query: 430 HWNHQVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGA 489 HWN QV+RWLT+ATGEPIWS WYAGRP+LVTANDYGL +YNGDTGV V+ G AA G+ Sbjct: 423 HWNRQVERWLTDATGEPIWSDWYAGRPLLVTANDYGLRLYNGDTGVTVVRGDGLAAVVGS 482 Query: 490 LRVLIAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYT 549 P++F+TSRL+DVET+HAMTIHKSQGSQA +VTVLLP +SRLLTRELFYT Sbjct: 483 -------GAGPVEFSTSRLADVETVHAMTIHKSQGSQAREVTVLLPDEESRLLTRELFYT 535 Query: 550 AVTRAARKVRIVGPECDVXXXXXXXXXXXTGLRSRL 585 AVTRA KVR+VG E V +GL RL Sbjct: 536 AVTRAKAKVRVVGSEAAVRAAIERRVVRASGLAQRL 571 >tr|Q1BDM1|Q1BDM1_MYCSS Tax_Id=164756 SubName: Full=DNA helicase/exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Mycobacterium sp.] Length = 580 Score = 588 bits (1516), Expect = e-166 Identities = 326/576 (56%), Positives = 378/576 (65%), Gaps = 13/576 (2%) Query: 14 AASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS 73 A + +G LR F +A V + ADVHVA+RL M+ E D V LA+AF VRALR GSVCVDL Sbjct: 5 ALAVTGLLRAFTDAEVFEPADVHVARRLTDMAKEPDESVALAVAFAVRALRNGSVCVDLR 64 Query: 74 TIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDN---LVYLDRYWREEQQVXX 130 + QVG+ DLPW WL AVRASPL G+P VLRL+ + L+YLDRYWREEQQV Sbjct: 65 AVADQVGLPDLPWRDPEAWLTAVRASPLTGTPPVLRLYSGSSGDLLYLDRYWREEQQVCD 124 Query: 131 XXXXXXXXXXXXXXXXXEVNRLFPPG-YEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXX 189 ++RLFP + EQR AA+IAL+Q Sbjct: 125 DVLALLESSPPGAVPG--LDRLFPTADFPEQRVAAEIALSQSLTVLTGGPGTGKTTTVAR 182 Query: 190 XXXXXXXXXXXXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLH 249 + LRIALAAPTGKAAARL EAV QI LDA+D+ R+ L A+TLH Sbjct: 183 LLALLAEQASLQNRPPLRIALAAPTGKAAARLLEAVHLQIAGLDAVDRDRLPELTASTLH 242 Query: 250 RLLGSRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQ 309 RLL R D +SRFRHHR NRLPHDVIV+DETSMVSLT+MARLLEAVRP +RLLLVGD DQ Sbjct: 243 RLLQRRRDNASRFRHHRENRLPHDVIVVDETSMVSLTLMARLLEAVRPDSRLLLVGDADQ 302 Query: 310 LASVEAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAG 369 LASVEAGAVLADLVDGLGAR D +A L HRFG IG LA AIR G+ D V+ +LR G Sbjct: 303 LASVEAGAVLADLVDGLGARDDVRIARLVTSHRFGAPIGALAKAIRDGETDTVIGLLRDG 362 Query: 370 DDHIEWINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIA 429 IEW + +P +LR VL+PHAL E RLLCAHRRGPYG+ Sbjct: 363 GPDIEWFDTDNPADRLRKVLVPHALRLREAAILGDGPAALATLDEHRLLCAHRRGPYGVR 422 Query: 430 HWNHQVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGA 489 HWN QV+RWLT+ATGEPIWS WYAGRP+LVTANDYGL +YNGDTGV V+ G Sbjct: 423 HWNRQVERWLTDATGEPIWSDWYAGRPLLVTANDYGLRLYNGDTGVTVVRG-------DG 475 Query: 490 LRVLIAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYT 549 L ++ P++F+TSRL+DVET+HAMTIHKSQGSQA +VTVLLP +SRLLTRELFYT Sbjct: 476 LTAVVGSGAGPVEFSTSRLADVETVHAMTIHKSQGSQAREVTVLLPDEESRLLTRELFYT 535 Query: 550 AVTRAARKVRIVGPECDVXXXXXXXXXXXTGLRSRL 585 AVTRA KVR+VG E V +GL RL Sbjct: 536 AVTRAKAKVRVVGSEAAVRAAIERRVVRASGLAQRL 571 >tr|A1UBC0|A1UBC0_MYCSK Tax_Id=189918 SubName: Full=DNA helicase/exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Mycobacterium sp.] Length = 580 Score = 588 bits (1516), Expect = e-166 Identities = 326/576 (56%), Positives = 378/576 (65%), Gaps = 13/576 (2%) Query: 14 AASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS 73 A + +G LR F +A V + ADVHVA+RL M+ E D V LA+AF VRALR GSVCVDL Sbjct: 5 ALAVTGLLRAFTDAEVFEPADVHVARRLTDMAKEPDESVALAVAFAVRALRNGSVCVDLR 64 Query: 74 TIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDN---LVYLDRYWREEQQVXX 130 + QVG+ DLPW WL AVRASPL G+P VLRL+ + L+YLDRYWREEQQV Sbjct: 65 AVADQVGLPDLPWRDPEAWLTAVRASPLTGTPPVLRLYSGSSGDLLYLDRYWREEQQVCD 124 Query: 131 XXXXXXXXXXXXXXXXXEVNRLFPPG-YEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXX 189 ++RLFP + EQR AA+IAL+Q Sbjct: 125 DVLALLESSPPGAVPG--LDRLFPTADFPEQRVAAEIALSQSLTVLTGGPGTGKTTTVAR 182 Query: 190 XXXXXXXXXXXXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLH 249 + LRIALAAPTGKAAARL EAV QI LDA+D+ R+ L A+TLH Sbjct: 183 LLALLAEQASLQNRPPLRIALAAPTGKAAARLLEAVHLQIAGLDAVDRDRLPELTASTLH 242 Query: 250 RLLGSRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQ 309 RLL R D +SRFRHHR NRLPHDVIV+DETSMVSLT+MARLLEAVRP +RLLLVGD DQ Sbjct: 243 RLLQRRRDNASRFRHHRENRLPHDVIVVDETSMVSLTLMARLLEAVRPDSRLLLVGDADQ 302 Query: 310 LASVEAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAG 369 LASVEAGAVLADLVDGLGAR D +A L HRFG IG LA AIR G+ D V+ +LR G Sbjct: 303 LASVEAGAVLADLVDGLGARDDVRIARLVTSHRFGAPIGALAKAIRDGETDTVIGLLRDG 362 Query: 370 DDHIEWINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIA 429 IEW + +P +LR VL+PHAL E RLLCAHRRGPYG+ Sbjct: 363 GPDIEWFDTDNPADRLRKVLVPHALRLREAAILGDGPAALATLDEHRLLCAHRRGPYGVR 422 Query: 430 HWNHQVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGA 489 HWN QV+RWLT+ATGEPIWS WYAGRP+LVTANDYGL +YNGDTGV V+ G Sbjct: 423 HWNRQVERWLTDATGEPIWSDWYAGRPLLVTANDYGLRLYNGDTGVTVVRG-------DG 475 Query: 490 LRVLIAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYT 549 L ++ P++F+TSRL+DVET+HAMTIHKSQGSQA +VTVLLP +SRLLTRELFYT Sbjct: 476 LTAVVGSGAGPVEFSTSRLADVETVHAMTIHKSQGSQAREVTVLLPDEESRLLTRELFYT 535 Query: 550 AVTRAARKVRIVGPECDVXXXXXXXXXXXTGLRSRL 585 AVTRA KVR+VG E V +GL RL Sbjct: 536 AVTRAKAKVRVVGSEAAVRAAIERRVVRASGLAQRL 571 >tr|A1T4E3|A1T4E3_MYCVP Tax_Id=350058 SubName: Full=DNA helicase/exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Mycobacterium vanbaalenii] Length = 551 Score = 586 bits (1511), Expect = e-165 Identities = 323/558 (57%), Positives = 369/558 (66%), Gaps = 18/558 (3%) Query: 29 VIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEAQVGIADLPWPA 88 + + AD+HVAQRL + E D V LA+A VRALRGGSVCVDL I QVG+ +LPWP Sbjct: 9 LFEPADLHVAQRLTTLGKEGDDSVALAVALAVRALRGGSVCVDLRAIATQVGMPELPWPE 68 Query: 89 AGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXXXE 148 WLAAV ASPL VLR+H D L+YLDRYWREEQQV E Sbjct: 69 PDRWLAAVGASPLADE-RVLRMHGD-LLYLDRYWREEQQVCDDVLALLASPLPATAPSIE 126 Query: 149 VNRLFPPGYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKARLRI 208 RLFP G+EEQR AAK+AL Q G A R+ Sbjct: 127 --RLFPAGWEEQREAAKVALRQSLTVLTGGPGTGKTTTVARLLASIAEQAESAGGAPPRM 184 Query: 209 ALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLGSRPDTSSRFRHHRGN 268 ALAAPTGKAAARL +AV +++ KL A+DQ R+ GL+ATTLHRLLGSRPDTSSRFRHHR N Sbjct: 185 ALAAPTGKAAARLQDAVHAEVGKLPAVDQGRLAGLRATTLHRLLGSRPDTSSRFRHHRDN 244 Query: 269 RLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADLVDGLGA 328 RLPHDVIV+DETSMVSLTMMARLLEAVRP TRLL VGDPDQLASV+AGAVLADLV+GLG Sbjct: 245 RLPHDVIVVDETSMVSLTMMARLLEAVRPDTRLLFVGDPDQLASVDAGAVLADLVEGLG- 303 Query: 329 RHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHIEWINAADPTPQLRNV 388 D V L+ HRFGE+IG LA AIR GDAD V++LRAG D + W++ DP+ LR Sbjct: 304 --DAGVVELKTPHRFGETIGSLAEAIRAGDADTAVQLLRAGGDAVAWLDTDDPSDALRAT 361 Query: 389 LLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIAHWNHQVQRWLTEATGEPIW 448 L+ A E RLLCAHRRGP+G+ HWN QV+RWL + TG+P+W Sbjct: 362 LVARADELRRAALLGDARAALGVLDGHRLLCAHRRGPFGVTHWNRQVERWLADKTGQPMW 421 Query: 449 SSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLKFATSRL 508 S WY GRP+LVTANDYGLGVYNGDTGV V AAP LR + L+FA RL Sbjct: 422 SQWYPGRPLLVTANDYGLGVYNGDTGVVV-------AAPDGLRAHVGS----LQFAPGRL 470 Query: 509 SDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPECDVX 568 +VETM AMTIHKSQGSQAD+VTVLLPP DSRLLTRELFYTAVTRA + VR+VG E V Sbjct: 471 GEVETMFAMTIHKSQGSQADEVTVLLPPQDSRLLTRELFYTAVTRAKKHVRVVGTEASVR 530 Query: 569 XXXXXXXXXXTGLRSRLQ 586 +GL RL+ Sbjct: 531 TAIGRRATRASGLAQRLR 548 >tr|A4T1L4|A4T1L4_MYCGI Tax_Id=350054 SubName: Full=DNA helicase/exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Mycobacterium gilvum] Length = 555 Score = 574 bits (1479), Expect = e-161 Identities = 317/559 (56%), Positives = 366/559 (65%), Gaps = 14/559 (2%) Query: 27 AGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEAQVGIADLPW 86 A V + AD+HVAQRL + +SDP V LA+A VRA+R GSVCVDL T+ AQVG+ +LPW Sbjct: 7 AEVFEPADIHVAQRLTELGRDSDPTVALAVALAVRAVRSGSVCVDLRTVAAQVGVPELPW 66 Query: 87 PAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXX 146 P WL+ V ASPL V+RL D L+YLDRYWREE+QV Sbjct: 67 PDPDGWLSTVGASPLA-EHKVVRLDGD-LLYLDRYWREEEQVRDDVVALLSSPPRTAVPG 124 Query: 147 XEVNRLFPPGYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKARL 206 E RLFP G+EEQRAAA+ AL + G Sbjct: 125 LE--RLFPAGWEEQRAAAEAALTRSLTVLTGGPGTGKTTTVARLLAAFAEQAELAGGPPP 182 Query: 207 RIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQATTLHRLLGSRPDTSSRFRHHR 266 R+ALAAPTGKAAARL +AVQ+++D+L A+D+ R+ GL+ATT+HRLLGSRPDTSSRFRHHR Sbjct: 183 RMALAAPTGKAAARLQDAVQAEVDRLSAVDRARLAGLRATTMHRLLGSRPDTSSRFRHHR 242 Query: 267 GNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADLVDGL 326 GNRLPHDVIV+DETSMVSLTMMARLLEAVRP TRLL VGDPDQLASV+AGAVLADLVDGL Sbjct: 243 GNRLPHDVIVVDETSMVSLTMMARLLEAVRPDTRLLFVGDPDQLASVDAGAVLADLVDGL 302 Query: 327 GARHDTHVAALRRLHRFGESIGQLAAAIRGGDADRVVEILRAGDDHIEWINAADPTPQLR 386 G + V L HRFGE IG LA AIR GDAD VE+LRAG D I W++ D LR Sbjct: 303 G---EAGVVELTTSHRFGERIGALALAIRSGDADATVEVLRAGGDAIGWLDTDDAADALR 359 Query: 387 NVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIAHWNHQVQRWLTEATGEP 446 L+ A + RLLCAHRRGP+G+AHWN Q++RWL E TG+ Sbjct: 360 GPLVDRAADLREAALLGDGETALRILDGHRLLCAHRRGPFGVAHWNRQIERWLAERTGQS 419 Query: 447 IWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLKFATS 506 IWS YAGRP+LVTANDYGLGVYNGDTGV V AAP LR I + A Sbjct: 420 IWSQPYAGRPLLVTANDYGLGVYNGDTGVVV-------AAPEGLRAHIGTPASSRELAVG 472 Query: 507 RLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPECD 566 RL +VETM AMTIHKSQGSQAD+VTVL+PP DSRLLTRELFYTAVTRA +V++VG E Sbjct: 473 RLGEVETMFAMTIHKSQGSQADEVTVLMPPQDSRLLTRELFYTAVTRAKERVQVVGTEAS 532 Query: 567 VXXXXXXXXXXXTGLRSRL 585 V +GL RL Sbjct: 533 VRAAVGRRAVRASGLARRL 551 >tr|C1WNL3|C1WNL3_9ACTO Tax_Id=479435 SubName: Full=Exodeoxyribonuclease V, beta subunit/exodeoxyribonuclease V, alpha subunit;[Kribbella flavida DSM 17836] Length = 1689 Score = 523 bits (1348), Expect = e-146 Identities = 299/588 (50%), Positives = 356/588 (60%), Gaps = 15/588 (2%) Query: 6 VDPADWRQAASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRG 65 VD D A +A+G LR FN AGVI AADVHVA RL M E+D V LA A V RA+R Sbjct: 1103 VDEFDSTLALAATGVLRDFNTAGVILAADVHVATRLTTMLEETDERVALACALVARAVRA 1162 Query: 66 GSVCVDLSTIEAQVGI--ADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWR 123 GS+C+DL+ + +VG A+L WP EWL A+RASPL+ +P L L ED +Y DRYWR Sbjct: 1163 GSICLDLAEVRDEVGEDGAELDWPVLDEWLTALRASPLLAAPYPLHL-EDTRLYFDRYWR 1221 Query: 124 EEQQVXXXXXXXXXXXXXXXXXXXEVN----RLFP-PGYEEQRAAAKIALAQXXXXXXXX 178 EE+QV + RLFP Y EQRAAA+ A Q Sbjct: 1222 EEEQVEQDLRRRAGRPAPVIANEAVLQAGLGRLFPGSSYVEQRAAAQTAARQWTTVLTGG 1281 Query: 179 XXXXXXXXXXXXXXXXXXXXXXXGKARLRIALAAPTGKAAARLHEAVQSQID-KLDAIDQ 237 G IAL APTGKAAARL EAV+ ++ +L A D Sbjct: 1282 PGTGKTTTVAGLLALLAEQAEIAGDRSPWIALTAPTGKAAARLEEAVRREMSGRLSAEDT 1341 Query: 238 QRVRGLQATTLHRLLGSRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRP 297 R+ A TLH LLG RPD+SSRFRH R NRLPHD++V+DETSMVSLTMMARLLEAVRP Sbjct: 1342 ARLGDFHARTLHMLLGRRPDSSSRFRHDRDNRLPHDIVVVDETSMVSLTMMARLLEAVRP 1401 Query: 298 QTRLLLVGDPDQLASVEAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGG 357 RL+LVGDPDQLAS+EAGAVLADLVDGL A A LR HRFG IG LA A+R Sbjct: 1402 GARLILVGDPDQLASIEAGAVLADLVDGLVAGGHIAAAELRTSHRFGSEIGALALAVRED 1461 Query: 358 DADRVVEILRAGDDHIEWINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRL 417 D V+ +LR G D + ++ DP LR+ LLP L RL Sbjct: 1462 RPDNVLAVLRGGGDRVHFVEDDDPRETLRSALLPDVLAIRDAAEAGDADAALAALDRHRL 1521 Query: 418 LCAHRRGPYGIAHWNHQVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAV 477 LCAHR GP+G+ HWN V+RW+TE T +P+W +WY GRPVLVTANDY LG+YNGD GV + Sbjct: 1522 LCAHREGPWGVQHWNRTVERWITEETEDPLWDTWYVGRPVLVTANDYALGIYNGDVGVTI 1581 Query: 478 LDGTNRAAAPGALRVLIAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPA 537 G+LRV I ++ L FA SRL ++ET+HAMTIHK+QGSQA +VTVL+P Sbjct: 1582 ------RRPDGSLRVCIDSSRGRLDFAPSRLGNIETLHAMTIHKAQGSQAAEVTVLMPNE 1635 Query: 538 DSRLLTRELFYTAVTRAARKVRIVGPECDVXXXXXXXXXXXTGLRSRL 585 +SRLLTRELFYTA+TRA +VR+VG E V TGLR RL Sbjct: 1636 ESRLLTRELFYTAITRAENRVRVVGDEQSVRLALSRRALRATGLRQRL 1683 >tr|A1SDB3|A1SDB3_NOCSJ Tax_Id=196162 SubName: Full=DNA helicase/exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Nocardioides sp.] Length = 584 Score = 439 bits (1129), Expect = e-121 Identities = 272/589 (46%), Positives = 334/589 (56%), Gaps = 24/589 (4%) Query: 6 VDPADWRQAASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRG 65 VD DWR A A+G L TFN AGV+ ++DVHVA R+ + GE+D +LLA+A VRA+R Sbjct: 8 VDEHDWRIATGATGLLATFNAAGVLTSSDVHVATRIGVLGGETDERMLLAVALTVRAVRR 67 Query: 66 GSVCVDLSTIEAQVGIADLPWPAAGEWLAAVRASPLVGSPAVLRLHEDNLVYLDRYWREE 125 GSVC+DL+ + A DLPWP EW V SPLV + V HE L+YLDRY R E Sbjct: 68 GSVCLDLAGVAATA--PDLPWP--DEW--PVAGSPLVHAGVVRWDHE--LLYLDRYHRLE 119 Query: 126 QQVXXXXXXXXXXXXXXXXXXX---EVNRLFPPGYEEQRAAAKIALAQXXXXXXXXXXXX 182 +QV + RL + E++ AA +A + Sbjct: 120 RQVHDDLAARLALAPPAVDEQRLEAALARLGGGHFSEEQRAAVVAAVRRRTTILTGGPGT 179 Query: 183 XXXXXXXXXXXXXXXXXXXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQR--- 239 +RL IALAAPTGKAA RL EAV +++ + + Sbjct: 180 GKTTTVARLLALLADQAAGRGSRLSIALAAPTGKAATRLQEAVVTELAAVATAWPEAPAL 239 Query: 240 VRGLQATTLHRLLGSRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQT 299 V L TLHRLLG RPD ++RFRH R NRL +DV+V+DE+SMV LTMM RLLEA+RP + Sbjct: 240 VGRLDGLTLHRLLGWRPDNATRFRHDRANRLKYDVVVVDESSMVELTMMGRLLEALRPDS 299 Query: 300 RLLLVGDPDQLASVEAGAVLADLVDGLGARHDTHVAALRRLHRFGESIGQLAAAIRGGDA 359 RL+LVGDP QL SV AGAVL+DLV G R D+ VAAL R E I LAAA+R GDA Sbjct: 300 RLVLVGDPQQLTSVGAGAVLSDLVAGYEGRPDSPVAALSTNFRSEEDIKSLAAALRSGDA 359 Query: 360 DRVVEILRAGDDHIEWI---NAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQR 416 D V+ +LRA + + W+ +AA+ LR L A R Sbjct: 360 DEVIAVLRAPSEQVSWVETSDAAEVEAALRPDSLASARAVWAAARDEDAERALAELDRYR 419 Query: 417 LLCAHRRGPYGIAHWNHQVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVA 476 LLCAHR G YG+ WNH V+RWL E I+ WY GRP+LVT+NDY L VYNG++GV Sbjct: 420 LLCAHREGLYGVRRWNHLVERWLAEDPDVEIYDEWYVGRPLLVTSNDYALDVYNGESGVV 479 Query: 477 VLDGTNRAAAPGALRVLIAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPP 536 V R RV +AG++ +FA RL VETMHAMTIHKSQGSQAD V+VLLP Sbjct: 480 VRQDQRR-------RVFVAGSERLKEFAPGRLEAVETMHAMTIHKSQGSQADRVSVLLPD 532 Query: 537 ADSRLLTRELFYTAVTRAARKVRIVGPECDVXXXXXXXXXXXTGLRSRL 585 SRLLT ELFYTA+TRA VR+VG E V TGLR+RL Sbjct: 533 EGSRLLTLELFYTAITRARHHVRVVGSEAAVRAAVDTRAQRATGLRARL 581 >tr|A6W6P3|A6W6P3_KINRD Tax_Id=266940 SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Kineococcus radiotolerans] Length = 634 Score = 371 bits (952), Expect = e-100 Identities = 263/624 (42%), Positives = 327/624 (52%), Gaps = 57/624 (9%) Query: 7 DPADW--RQAASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALR 64 DPAD +A ASG LR FN+ G++ AADVHVA+RL A++GE D VLLA+A VRA+R Sbjct: 23 DPADRSAHRARGASGLLREFNDLGLLHAADVHVARRLGAVTGEDDERVLLAVALAVRAVR 82 Query: 65 GGSVCVDLSTI-----------EAQVGIADLPWPAAGEWLAAVRASPLV---------GS 104 GSV + L + VG + WP EWLAA+R SPL+ G Sbjct: 83 HGSVVLHLRQVPETVVPEDVEDSGAVGTVAVRWPDPEEWLAALRRSPLLVEHAPGETTGP 142 Query: 105 PAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXXXE--VNRLFPPGY-EEQR 161 A L L D L +LDRYWR+E V + ++RL+P G ++QR Sbjct: 143 AAPLHLVGDGL-WLDRYWRQELAVAEDLRARSAAVAGYDPAAVDAVLDRLWPGGLADDQR 201 Query: 162 AAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKARLRIALAAPTGKAAARL 221 AA + LA R+ALAAPTGKAAARL Sbjct: 202 TAAAVCLAHGVSVLGGGPGTGKTTTVARLLAAVHALSPGPP----RVALAAPTGKAAARL 257 Query: 222 HEAVQSQIDKLDAIDQQR--VRGLQATTLHRLLGSRPDTSSRFRHHRGNRLPHDVIVIDE 279 EAV S D +R +R A+TLHRLLG RP S R R+ +RLPHDV+++DE Sbjct: 258 TEAVVSAAGTDGFTDDERRFLRSTTASTLHRLLGIRPG-SVRARYDAEHRLPHDVVIVDE 316 Query: 280 TSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADLV-------DGLGARHDT 332 SMV L +MARLL A+RP RL+LVGDP QLASVE GAVLADLV G Sbjct: 317 ASMVGLGVMARLLAALRPGARLVLVGDPQQLASVEVGAVLADLVAPAERAAPGAAPAVPH 376 Query: 333 HVAALRRLHRFGE--SIGQLAAAIRGGDADRVVEILRAGDDHIEWINAAD-------PTP 383 VA LRR HRF + I +AAA+R G A+ VV++LRAG +E++ D Sbjct: 377 GVALLRRTHRFADRGGIAAIAAAVRRGAAEEVVDLLRAGGPDVEFLEVPDEELVAGAALE 436 Query: 384 QLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIAHWNHQVQRWLTEAT 443 +R +L + R LCAHRRG G++HW+ QRW E Sbjct: 437 AVRAEVLRRSAAVVEAARAGDAAAALTALDAHRTLCAHRRGTRGVSHWSALAQRWAVEDL 496 Query: 444 G-EPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLK 502 G +P Y G PV+VTAND G+GV+NGDTGV VLD G L IA PL Sbjct: 497 GVQPRTDGRYVGLPVIVTANDPGVGVFNGDTGV-VLD------RDGTLVAAIARGAGPLL 549 Query: 503 FATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVG 562 +RL+ VE +HAMT+H+SQGSQ D VTVL P S L TRE+FYTA+TRA +VR+VG Sbjct: 550 VPLARLAAVEPVHAMTVHRSQGSQFDVVTVLAAPERSPLATREMFYTALTRAKVRVRVVG 609 Query: 563 PECDVXXXXXXXXXXXTGLRSRLQ 586 V TGL RL+ Sbjct: 610 SPEAVAAAVSRPLARATGLAERLR 633 >tr|Q5YWP7|Q5YWP7_NOCFA Tax_Id=37329 (recD)SubName: Full=Putative RecD protein;[Nocardia farcinica] Length = 628 Score = 369 bits (946), Expect = e-100 Identities = 255/612 (41%), Positives = 320/612 (52%), Gaps = 74/612 (12%) Query: 14 AASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS 73 A +G LRTFNEAGV+ AADVHVA RL + E +VL A A VRA+R GSVC++L Sbjct: 7 AQRGTGLLRTFNEAGVLSAADVHVAVRLGRLGREESELVLFAAALAVRAVRSGSVCLELH 66 Query: 74 TI-----------EAQVGI--ADLPWPAAGEWLAAVRASPLV-GSPA-------VLRLHE 112 + +A GI A LPWP +AA+R SPLV G PA V+ + Sbjct: 67 RMREIGVDADESWDAGTGIDPASLPWPDVEAVIAALRVSPLVCGGPAGPLCPLRVVPGDD 126 Query: 113 DNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXXX--EVNRLFPPGYE----EQRAAAKI 166 L+YLDRY+R+EQ + E++RLF ++ QR AA + Sbjct: 127 GPLLYLDRYFRQEQTIRRVLTERAASHPRVNAAIVRRELDRLFGADHDGAPDRQRLAAAL 186 Query: 167 ALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKAR-LRIALAAPTGKAAARLHEAV 225 A KA LRIALAAPTGKAAARL EAV Sbjct: 187 AATHWTTVVAGGPGTGKTHTIARILALLDAHRRADPKAPPLRIALAAPTGKAAARLQEAV 246 Query: 226 QSQIDKLDAIDQQRVRGLQATTLHRLLGSRPDTSSRFRHHRGNRLPHDVIVIDETSMVSL 285 + Q +L + L A TLHRLLG + +RFRH+ NRLP+DVIV+DETSMVSL Sbjct: 247 REQAGELGLPE------LSAATLHRLLGWQRGRRTRFRHNEFNRLPYDVIVVDETSMVSL 300 Query: 286 TMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADLVDG--LG---------------- 327 TMM+ LL A+RP TRL+LVGDPDQLASV+AGAVLADLV G LG Sbjct: 301 TMMSSLLAALRPDTRLVLVGDPDQLASVDAGAVLADLVAGPVLGTPNPELDRILGGPPPD 360 Query: 328 -ARHDTHVAALRRL------------HRFGESIGQLAAAIRGGDADRVVEILRAGDDHIE 374 A H + AL R RFG I +LA A+R GDADR + +L G D + Sbjct: 361 LAAHPEGLTALERTRLRSGIVRLTRGRRFGGRIAELAVAVRAGDADRALHLLHTGGDDLS 420 Query: 375 WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRGPYGIAHWNHQ 434 + A D +R ++ A RLLCAHR+GP+G+ W+ Sbjct: 421 -LCAPDDVATVRADVVRAARTVTAAAQAGDATGALTALESHRLLCAHRQGPFGVERWDRL 479 Query: 435 VQRWLTEATGEP--IWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRV 492 W A P SSWY G+P+LVTAND+ +YNGDTGV V A G+LR Sbjct: 480 AGEWAAAAGAGPDSAQSSWYPGQPLLVTANDHEARIYNGDTGVIV------AMPDGSLRA 533 Query: 493 LIAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVT 552 + EP ++ V T+ AMTIH+SQGSQ D V+++LP +S LLTREL YTA+T Sbjct: 534 ALQRGSEPYLVHPTQFPAVVTVFAMTIHRSQGSQYDTVSIVLPEPESTLLTRELLYTAIT 593 Query: 553 RAARKVRIVGPE 564 RA VR++G E Sbjct: 594 RARGHVRVIGTE 605 >tr|C1RHS1|C1RHS1_9CELL Tax_Id=446466 SubName: Full=Exodeoxyribonuclease V, alpha subunit;[Cellulomonas flavigena DSM 20109] Length = 1794 Score = 353 bits (907), Expect = 3e-95 Identities = 254/638 (39%), Positives = 309/638 (48%), Gaps = 72/638 (11%) Query: 7 DPADWRQAASASGPLRTFNEAGVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGG 66 D D R+ A L TF +AGV+ +ADV VA+RL ++GE DP V LA A VRA+R G Sbjct: 1164 DTGDPRRPWRAGPLLTTFADAGVLTSADVRVAERLGDLTGEDDPTVHLAAALAVRAVRAG 1223 Query: 67 SVCVDLSTI------------EAQVGIADLPWPAAGEWLAAVRASPLVGS----PAVLRL 110 SVCVDL+ +A + LPWP W AAVR S +V PA + Sbjct: 1224 SVCVDLADAPSLVAEGSPDDPDAPLPAGTLPWPDTAAWTAAVRGSGMVADGVDGPADRPV 1283 Query: 111 H-EDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXXXE--VNRLFPPGYEEQRAAAKIA 167 D VYLDRYWR+EQ V V+ FP Q A ++A Sbjct: 1284 RWVDGRVYLDRYWRDEQVVRRDVDARLTSLLDVDDDALRRAVHARFP---RAQDARQRVA 1340 Query: 168 LAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKARLRIALAAPTGKAAARLHEAVQS 227 A LRIALAAPTGKAA RL EAV + Sbjct: 1341 AATAAVSRLTVLTGGPGTGKTTTVARLVAVLRDVAGPGLRIALAAPTGKAATRLQEAVNA 1400 Query: 228 QIDKLD-------AIDQQRVRGLQATTLHRLLGSRPDTSSRFRHHRGNRLPHDVIVIDET 280 ++ +LD R L A+T+HRLLG RP +S+RF H +RLPHDV+V+DE Sbjct: 1401 ELARLDDAAVGGTVAAPGAARPLTASTIHRLLGWRP-SSTRFAHDHAHRLPHDVVVLDEA 1459 Query: 281 SMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADLV------DGLGAR----- 329 SMVSL ++AR+L+A+RP RL+LVGDPDQLASVE GAVL DLV L AR Sbjct: 1460 SMVSLPLLARVLDALRPDARLVLVGDPDQLASVEVGAVLGDLVARPTRSGPLPARLAALL 1519 Query: 330 -----------HDTHVAA--------LRRLHRFGESIGQLAAAIRGGDADRVVEILRAGD 370 DT AA L HRFG + +LA A+R GDAD + +LRAG Sbjct: 1520 PDDVPGTATSADDTRDAAALHGGVVRLVVTHRFGHELAELADAVRRGDADATLALLRAGG 1579 Query: 371 DHIEWINAA------DPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLLCAHRRG 424 H + A D P LR + RLL AHRRG Sbjct: 1580 AHASLVEPAAEVPTEDEVPGLRGDVSATGARLVAAARAGDTAGALEALGVHRLLLAHRRG 1639 Query: 425 PYGIAHWNHQVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRA 484 P G+A W QRW+ + G+ GRP+LVT ND G+ NGD GV V DG Sbjct: 1640 PAGVARWAALAQRWVEKTVGDLQPGPLSLGRPLLVTVNDRTTGLSNGDIGVLVSDGA--- 1696 Query: 485 AAPGALRVLIAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTR 544 G + + P RL VET+HAMT+H++QGSQ VTVLLPPA S LLTR Sbjct: 1697 ---GGVVAAFGESHAPRLVRPHRLPAVETVHAMTVHRAQGSQFTFVTVLLPPASSPLLTR 1753 Query: 545 ELFYTAVTRAARKVRIVGPECDVXXXXXXXXXXXTGLR 582 EL YTAVTRA VR+VG V +GLR Sbjct: 1754 ELLYTAVTRAQEHVRVVGSAEAVRRAVERPVRRASGLR 1791 >tr|D0L8X2|D0L8X2_GORB4 Tax_Id=526226 SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Gordonia bronchialis] Length = 641 Score = 255 bits (652), Expect = 1e-65 Identities = 166/422 (39%), Positives = 219/422 (51%), Gaps = 49/422 (11%) Query: 206 LRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRG---LQATTLHRLLGSRPDTSSRF 262 LR+ L APTG+AAA+L +V +D + G L A T+H LLG P ++ RF Sbjct: 225 LRVGLCAPTGRAAAQLQASVSPGGSA--GLDPTLITGAGALHAVTVHSLLGWYPGSNPRF 282 Query: 263 RHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL 322 RG+ LPHDVIV+DETSM+S+T M+R+L+A RP R++ VGDP QLASV+AGAVLADL Sbjct: 283 G--RGHTLPHDVIVVDETSMLSMTAMSRVLDAARPDARVIFVGDPHQLASVDAGAVLADL 340 Query: 323 VD-------------------------------------GLGARHDTHVAALRRLHRFGE 345 V+ G AR V LRR +RFG Sbjct: 341 VERTDTDPGPAAGESAHASIALQAAGIGPERVSAEAIGPGEAARISRGVITLRREYRFGG 400 Query: 346 SIGQLAAAIRGGDADRVVEILRAGDDHIEWINAADPTPQLRNVLLPHALEXXXXXXXXXX 405 I +AAA+ GDA RV+++L D + A D R + E Sbjct: 401 GIAAVAAAVNAGDATRVIDLLTDPDVSDIELIAPDNIDATRPDVTAWGRELRTAALACDA 460 Query: 406 XXXXXXXXEQRLLCAHRRGPYGIAHWNHQVQRWLTEATGEPIWSSWYAGRPVLVTANDYG 465 R+LCAHR G +G+ W+ +V WL P W+AG+P+LVTAND Sbjct: 461 HAAVEALDSHRVLCAHREGYWGVRGWSRRVAEWLGHDADRP---GWFAGQPILVTANDRQ 517 Query: 466 LGVYNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLKFATSRLSDVETMHAMTIHKSQGS 525 +NGDTGV + D + P LRV E ++L+++ T++AMTIH+SQGS Sbjct: 518 TRTFNGDTGVIIRDP--HSGDPDDLRVAFRRGGEVRLLRRTQLAEISTVYAMTIHRSQGS 575 Query: 526 QADDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPECDVXXXXXXXXXXXTGLRSRL 585 Q D VTV+LPP+ S LLTREL YTA+TRA VR+V V +GLRS + Sbjct: 576 QFDRVTVVLPPSGSELLTRELLYTAITRARTAVRVVAAPDVVRAAVERRVQRASGLRSPV 635 Query: 586 QP 587 P Sbjct: 636 TP 637 Score = 69.3 bits (168), Expect = 1e-09 Identities = 49/123 (39%), Positives = 66/123 (53%), Gaps = 12/123 (9%) Query: 18 SGPLRTFNEAGVIDAADVHVAQRLAAMSGES-DPVVLLAIAFVVRALRGGSVCVDLSTIE 76 +G L +N AGV+ AADVHV RL M GE + LL A VRA+R GS C+ L I Sbjct: 22 AGILARWNAAGVLAAADVHVTDRLTRMCGEPLSDLALLGTALAVRAVRLGSTCLALDRIG 81 Query: 77 AQVGIADLP---WPAAGEWLAAVRASPLVGS-------PAVLRLHEDN-LVYLDRYWREE 125 G+ D P PA E L+ +R PLV P +L +D L+YL +Y+R+E Sbjct: 82 DIPGLPDQPDLVLPAPAELLSELRRCPLVVGTGAGPLRPLMLMGSDDGPLLYLQKYFRQE 141 Query: 126 QQV 128 + + Sbjct: 142 ETI 144 >tr|A8AP32|A8AP32_CITK8 Tax_Id=290338 SubName: Full=Putative uncharacterized protein;[Citrobacter koseri] Length = 608 Score = 247 bits (630), Expect = 4e-63 Identities = 199/575 (34%), Positives = 273/575 (47%), Gaps = 60/575 (10%) Query: 38 AQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEAQVGIADL--PW----PAAGE 91 AQ A++G+ DP V LA+A + R G VC+ LS + L W + Sbjct: 21 AQFALAVAGQDDPCVTLAVALLSRDAGEGHVCMPLSRLAITEESHPLLVSWFSERDVPED 80 Query: 92 WLAAVRASPLVGS---PAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXXXE 148 W + + AS V P L LHED L YL+R W E+ V Sbjct: 81 WASCLLASGAVSRGERPTPLILHEDRL-YLNRMWSNERTVARFFSEVNQAIAVDEQQLAR 139 Query: 149 -VNRLFPPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKAR 205 ++ LFPP + Q+ AA +AL + R Sbjct: 140 TLDALFPPTDDVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE---R 196 Query: 206 LRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVR-GLQATTLHRLLGSRPDTSSRFRH 264 RI LAAPTGKAAARL E++ + + +L D+Q+ R A+TLHRLLG++P S R RH Sbjct: 197 CRIRLAAPTGKAAARLTESLGAALRQLPLTDEQKKRIPDDASTLHRLLGAQPG-SQRLRH 255 Query: 265 HRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADLV- 323 H GN L DV+V+DE SM+ L MM+RL+EA+ P R++ +GD DQLASVEAGAVL D+ Sbjct: 256 HAGNPLHLDVLVVDEASMIDLPMMSRLIEALPPHGRVIFLGDRDQLASVEAGAVLGDICA 315 Query: 324 -------------------DGLGARHDTHVAALR-------RLHRFG--ESIGQLAAAIR 355 + A T A+LR + +RFG IGQLAAAI Sbjct: 316 WVNAGFTAGRAQQLSRLTGSPIPAGAGTEAASLRDSLCLLQKSYRFGHDSGIGQLAAAIN 375 Query: 356 GGDADRVVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXX 412 GD + + + G IE ++ D L L + Sbjct: 376 CGDKAAMKTVFQQGFSDIEKRTLQSSEDYAAMLDEALAGYGRYLALVREGAEPGAIIQAF 435 Query: 413 XEQRLLCAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGVYN 470 E +LLCA R GP+G+ N ++++ + + S WY GRPV++ ND LG++N Sbjct: 436 NEYQLLCALREGPFGVGGLNERIEQVMLQKRKIQRHPHSRWYEGRPVMIARNDSALGLFN 495 Query: 471 GDTGVAVLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQADD 529 GD G+A+ G LRV A +K SRL + ET AMT+HKSQGS+ D Sbjct: 496 GDIGIALDRGQ-------GLRVWFAMPDGSIKSVQPSRLPEHETTWAMTVHKSQGSEFDH 548 Query: 530 VTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPE 564 ++LP S ++TREL YTAVTRA R++ + E Sbjct: 549 AALILPSQRSPVVTRELVYTAVTRARRRLSLYADE 583 >tr|C2B9P7|C2B9P7_9ENTR Tax_Id=500640 SubName: Full=Putative uncharacterized protein;[Citrobacter youngae ATCC 29220] Length = 609 Score = 244 bits (624), Expect = 2e-62 Identities = 199/577 (34%), Positives = 273/577 (47%), Gaps = 64/577 (11%) Query: 38 AQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEAQ--------VGIADLPWPAA 89 AQ A++G +P V LA A + R G VC+ LS + + +AD+ P Sbjct: 21 AQFALAVAGNDNPAVALAAALLSREAGEGHVCLPLSRLSLREDAPPLLSAWLADIGEPE- 79 Query: 90 GEWLAAVRASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXX 146 +W + AS V P L L+ D L YL+R W E+ V Sbjct: 80 -DWAECLLASGAVSRGEQPTPLVLYGDRL-YLNRMWHNERAVARFFSEVNHAIEVDEQRL 137 Query: 147 XE-VNRLFPP--GYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGK 203 + + LFP G Q+ AA +AL + Sbjct: 138 TDTLEALFPSSEGVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-- 195 Query: 204 ARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVR-GLQATTLHRLLGSRPDTSSRF 262 R RI LAAPTGKAAARL ++ + + +L D+Q+ R A+TLHRLLG++P S R Sbjct: 196 -RCRIRLAAPTGKAAARLTASLGAALRELPLTDEQKKRIPDDASTLHRLLGAQPG-SQRL 253 Query: 263 RHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL 322 RHH GN L DV+V+DE SM+ L MM+RL++A+ P R++ +GD DQLASVEAGAVL D+ Sbjct: 254 RHHAGNPLHVDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQLASVEAGAVLGDI 313 Query: 323 V----DG----------------LGARHDTHVAALR-------RLHRFG--ESIGQLAAA 353 DG + A T AALR + +RFG IGQLAAA Sbjct: 314 CAFVNDGFTPERARQLSRLTGSVIPAGTGTQAAALRDSLCLLQKSYRFGSDSGIGQLAAA 373 Query: 354 IRGGDADRVVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXX 410 I GD V + + G IE + D L L + Sbjct: 374 INRGDKTAVKTVFQQGFGDIEKRTLHSGEDYAAMLDEALAGYGHYLDLLREGAAPDVIIQ 433 Query: 411 XXXEQRLLCAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGV 468 E +LLCA R GP+G+ N ++++ + + + S WY GRPV++ ND LG+ Sbjct: 434 AFNEYQLLCALREGPFGVGGLNERIEQVMAQKRKIHRSMHSRWYEGRPVMIARNDSSLGL 493 Query: 469 YNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQA 527 +NGD G+A+ G LRV A +K SRL + ET AMT+HKSQGS+ Sbjct: 494 FNGDIGIALDRGQ-------GLRVWFALPDGSIKSVQPSRLPEHETTWAMTVHKSQGSEF 546 Query: 528 DDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPE 564 D ++LP S ++TREL YTAVTRA R++ + E Sbjct: 547 DHAALILPSQHSPVVTRELVYTAVTRARRRLSLYADE 583 >tr|A1BGA2|A1BGA2_CHLPD Tax_Id=290317 SubName: Full=DNA helicase/exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Chlorobium phaeobacteroides] Length = 581 Score = 243 bits (620), Expect = 5e-62 Identities = 203/584 (34%), Positives = 283/584 (48%), Gaps = 47/584 (8%) Query: 34 DVHVAQRLAAMSGESDPVVLL--AIAFVVRALRGGSVCVDLSTIEAQV-----GIADLPW 86 D +A+ L +P VL+ ++ + +A+ G VC+DL I +V L Sbjct: 11 DRQIAEYLCR-GARDEPGVLVRSVVSLLSQAVGQGHVCLDLEEIAGEVVRIPGREEPLRL 69 Query: 87 PAAGEWLAAVRASPLVGSPAVLR---LHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXX 143 P LAA+R+ P VG P R L E +YL RY+R E Q+ Sbjct: 70 PGIVNLLAALRSLPTVGRPGEHRPLILDEAGRLYLYRYFRYELQLAEAIRARAAMETGSP 129 Query: 144 XXXX---EVNRLFPP---GYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXX 197 +++R F P G + QR AA AL + Sbjct: 130 DEAALAEQLDRYFVPDESGEDRQRQAALTALRRGFSVISGGPGTGKTTTVVRILGLLLEQ 189 Query: 198 XXXXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQ-QRVRGLQATTLHRLLGSRP 256 G R+RIA+AAPTGKAAARL ++ S + L ++ + Q TT+HRLLG+ P Sbjct: 190 T---GGERMRIAMAAPTGKAAARLASSIASLRESLPCTEEVKHTVPSQVTTIHRLLGTIP 246 Query: 257 DTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAG 316 + S+ FRH+ N LP+D +++DE SMV L +M L+ A+ PQ RL+L+GD DQLASVEAG Sbjct: 247 N-STGFRHNARNPLPYDAVIVDEASMVDLPLMTALVTALMPQARLILIGDRDQLASVEAG 305 Query: 317 AVLADL---VDGLGARHDT---HVAALRRLHRFGE--SIGQLAAAIRGGDADRVVEILRA 368 AVL D+ + G+ + V L R +RFG+ I L+ AI GDA + +L Sbjct: 306 AVLGDICRAAESPGSAVSSIKGCVTVLDRNYRFGDGSGIAALSRAINSGDAGEAIRLLGD 365 Query: 369 GDDHIEWINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQ-RLLCAHRRGPYG 427 D + A +R L LE E+ R+L A R GP+G Sbjct: 366 PADSTISLEATPMREAVRKRLASPVLEGFRPYLEAEAPEDALRLFERFRILTALREGPWG 425 Query: 428 IAHWNHQVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLD---GTNRA 484 A NH V+ L EA + +Y GRPVLVT NDY ++NGDTG+ + D G +A Sbjct: 426 AAGMNHAVETLLHEAGLLKADTPFYRGRPVLVTENDYIHKLFNGDTGIILPDPETGNQKA 485 Query: 485 --AAP-GALRVLIAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRL 541 AAP G +R + P +F + + T AMT+HKSQGS+ D V ++LPP D+ L Sbjct: 486 YFAAPDGTVRSI------PPEFLPAHV----TAFAMTVHKSQGSEFDRVLMVLPPEDTLL 535 Query: 542 LTRELFYTAVTRAARKVRIVGPECDVXXXXXXXXXXXTGLRSRL 585 LTREL YT +TRA + + + E +GLR RL Sbjct: 536 LTRELIYTGITRARQAITLWSDEAVFSAAVKRRTERRSGLRERL 579 >tr|C1MAZ6|C1MAZ6_9ENTR Tax_Id=469595 SubName: Full=Exonuclease V subunit alpha;[Citrobacter sp. 30_2] Length = 609 Score = 243 bits (619), Expect = 7e-62 Identities = 200/575 (34%), Positives = 269/575 (46%), Gaps = 60/575 (10%) Query: 38 AQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEAQVGIADL--PWPA-AGE--- 91 AQ A++G +P V LA A + R G VC+ LS + L W A GE Sbjct: 21 AQFALAVAGSDNPAVALAAALLSREAGEGHVCLPLSRLSLSEDAHPLLSAWLAETGEPED 80 Query: 92 WLAAVRASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXXXE 148 W + AS V P L L+ D L YL+R W E+ V Sbjct: 81 WAECLLASSAVSRGEQPTPLVLYGDRL-YLNRMWHNERTVARFFSEVNHAIEVDEQRLTH 139 Query: 149 -VNRLFPP--GYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKAR 205 + LFPP G Q+ AA +AL + R Sbjct: 140 TLAALFPPSEGVNWQKVAAAVALTRRISVISGGPGTGKTTTVARLLAALIQMADGE---R 196 Query: 206 LRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVR-GLQATTLHRLLGSRPDTSSRFRH 264 RI LAAPTGKAAARL ++ + + +L D+Q+ R A+TLHRLLG++P S R RH Sbjct: 197 CRIRLAAPTGKAAARLTASLGAALRELPLTDEQKKRIPDDASTLHRLLGAQPG-SQRLRH 255 Query: 265 HRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADLVD 324 H GN L DV+V+DE SM+ L MM+RL++A+ P R++ +GD DQLASVEAGAVL D+ Sbjct: 256 HAGNPLHLDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQLASVEAGAVLGDICA 315 Query: 325 GLG--------------------ARHDTHVAALR-------RLHRFG--ESIGQLAAAIR 355 +G A AALR + +RFG IGQLAAAI Sbjct: 316 FVGDGFTPERARQLSRLTGSAIPAGSGIQAAALRDSLCLLQKSYRFGSDSGIGQLAAAIN 375 Query: 356 GGDADRVVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXX 412 GD + + + G IE ++ D L L + Sbjct: 376 RGDKTAIKTVFQQGFSDIEKRTLHSSEDYAAMLDEALSGYGHYLDLLHEGAEPGAVIQAF 435 Query: 413 XEQRLLCAHRRGPYGIAHWNHQVQRWLT--EATGEPIWSSWYAGRPVLVTANDYGLGVYN 470 E +LLCA R GP+G++ N ++++ + S WY GRPV++ ND LG++N Sbjct: 436 NEYQLLCALREGPFGVSGLNERIEQVMAHQRKIHRSTHSRWYEGRPVMIARNDSSLGLFN 495 Query: 471 GDTGVAVLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQADD 529 GD GVA+ G LRV A +K SRL + ET AMT+HKSQGS+ D Sbjct: 496 GDIGVALDRGQ-------GLRVWFALPDGSIKSVQPSRLPEHETTWAMTVHKSQGSEFDH 548 Query: 530 VTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPE 564 ++LP S ++TREL YTAVTRA R++ + E Sbjct: 549 AALILPSQHSPVVTRELVYTAVTRARRRLSLYADE 583 >tr|Q1QYD2|Q1QYD2_CHRSD Tax_Id=290398 SubName: Full=DNA helicase/exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Chromohalobacter salexigens] Length = 655 Score = 238 bits (608), Expect = 1e-60 Identities = 204/604 (33%), Positives = 269/604 (44%), Gaps = 81/604 (13%) Query: 28 GVIDAADVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCV-------------DLST 74 G + D H A+ LA + VLLA A L G VC+ L Sbjct: 32 GWLRPLDAHFARFLAEHDARAPVEVLLAAALASHQLGRGHVCLTLPRALAAPRDVLSLPP 91 Query: 75 IEAQVGIADLPWP-------AAGEWLAAVRASPLVGSPAV----LRLHEDNLVYLDRYWR 123 +E +P P + W A + SPLV SP L L + L YL RYWR Sbjct: 92 LEEDAPHESVPLPDDFLRGLESATWAARLAESPLVASPGPGTTPLVLVGERL-YLRRYWR 150 Query: 124 EEQQVXXXXXXXXXXXXXXXXXXXE-VNRLFPP-GYEE-----QRAAAKIALAQXXXXXX 176 EQ V + RLF G E Q+ A +AL Sbjct: 151 AEQAVATHLGARLGRPLPVEASLAAPLARLFSANGASEDAPDWQKVACTLALRNRLTIIS 210 Query: 177 XXXXXXXXXXXXXXXXXXXXXXXXX--GKARLRIALAAPTGKAAARLHEAVQSQIDKLDA 234 G+ LRI LAAPTGKAAARL E++ + LD Sbjct: 211 GGPGTGKTTTVTRLLALLQTQALAASRGERALRIQLAAPTGKAAARLSESIAGAMSGLDV 270 Query: 235 -IDQQRVRGLQATTLHRLLGSRPDTSSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLE 293 D +A TLHRLLG+RPDT +FRHH G L D++V+DE SMV L +MA LLE Sbjct: 271 EADVAATLPREALTLHRLLGARPDTR-QFRHHAGQPLSLDLLVVDEASMVDLELMAALLE 329 Query: 294 AVRPQTRLLLVGDPDQLASVEAGAVLADLV-------------DGLGARHDT-------- 332 A+ + RL+L+GD DQLASVEAG+VL DL + L DT Sbjct: 330 ALPDEARLILLGDKDQLASVEAGSVLGDLCANALDQGYSPAACEVLSQLADTDMTPDPAC 389 Query: 333 -----HVAALRRLHRFG--ESIGQLAAAIRGGDADRVVEILRAGDDHIEWINAADPTPQL 385 HV LR+ RF IG LAAA GD + +A I+W+ +++ ++ Sbjct: 390 SPLADHVVMLRKSFRFDAHSGIGALAAATNDGDVAAFRQAWQAQYTDIQWLASSNAQREV 449 Query: 386 RNVLLPHALEXXXXXXXXXXXXXXXXXXEQ-RLLCAHRRGPYGIAHWNHQV------QRW 438 L + ++LCA +RGP+G+ N ++ + W Sbjct: 450 ERAALAGYRDFYRRVRDGASPADVLARLNDFQVLCALKRGPWGVEGLNARIAAGLWREGW 509 Query: 439 LTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLDGTNRAAAPGALRVLIAGAQ 498 + + G WYAGRPV+VT ND LG+YNGD G+A+ D A A LRV A A Sbjct: 510 IEDPQG------WYAGRPVMVTRNDPQLGLYNGDIGIALPD----AEAGRRLRVFFATAG 559 Query: 499 EPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTRAARKV 558 SRL ET+ AMT+HKSQGS+ V +LP + +LTREL YT +TRA +++ Sbjct: 560 GVRAVLPSRLDACETVFAMTVHKSQGSEFTHVMFVLPERANPILTRELVYTGITRARQRL 619 Query: 559 RIVG 562 + G Sbjct: 620 TLAG 623 >tr|B4TGP7|B4TGP7_SALHS Tax_Id=454169 (recD)SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Salmonella heidelberg] Length = 611 Score = 238 bits (606), Expect = 2e-60 Identities = 198/577 (34%), Positives = 272/577 (47%), Gaps = 64/577 (11%) Query: 38 AQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS----TIEAQ----VGIADLPWPAA 89 AQ ++G DP V LA A + G VC+ LS T EA I++ P P Sbjct: 21 AQFALTVAGNDDPAVTLAAALLSHDAGEGHVCLPLSRLTLTEEAHPLLVAWISETPTPI- 79 Query: 90 GEWLAAVRASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXX 146 +W + AS V SPA L L D L YL+R W E+ V Sbjct: 80 -DWKKRLLASAAVSCGDSPAPLILCGDRL-YLNRMWCNERTVARFFNEVNQAIAVDEDQL 137 Query: 147 XEV-NRLFPPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGK 203 + + LFPP E Q+ AA +AL + Sbjct: 138 SRILDALFPPTDEVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-- 195 Query: 204 ARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ-ATTLHRLLGSRPDTSSRF 262 R RI LAAPTGKAAARL E++ + + +L D Q+ R + A+TLHRLLG++P S R Sbjct: 196 -RCRIRLAAPTGKAAARLTESLGAALRQLPLTDAQKKRIPEDASTLHRLLGAQPG-SQRL 253 Query: 263 RHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL 322 RHH GN L DV+V+DE SM+ L MM+RL++A+ P R++ +GD DQLASVEAGAVL D+ Sbjct: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQLASVEAGAVLGDI 313 Query: 323 V--------------------DGLGARHDTHVAALR-------RLHRFG--ESIGQLAAA 353 + A T A+LR + +RFG IG+LAAA Sbjct: 314 CAYVNAGFTAERARQLSRLTGSAIPAGAGTQAASLRDSLCLLQKSYRFGSDSGIGKLAAA 373 Query: 354 IRGGDADRVVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXX 410 I GD + + + G IE ++ D L L + Sbjct: 374 INCGDRSAIQAVFQQGFSDIEKRTLQSSDDYAGMLDEALAGYGRYLRLLHEKATPEAILQ 433 Query: 411 XXXEQRLLCAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGV 468 E +LLCA R GP+G+ N ++++ + + S WY GRPV++ ND LG+ Sbjct: 434 AFNEYQLLCALREGPFGVRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGL 493 Query: 469 YNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQA 527 +NGD G+A+ G LRV +K SRL + +T AMT+HKSQGS+ Sbjct: 494 FNGDIGIALDRGQ-------GLRVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEF 546 Query: 528 DDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPE 564 D ++LP S ++TREL YTAVTRA R++ + E Sbjct: 547 DHAALILPSQRSPVVTRELVYTAVTRARRRLSLYADE 583 >tr|B4T4Y4|B4T4Y4_SALNS Tax_Id=423368 (recD)SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Salmonella newport] Length = 611 Score = 238 bits (606), Expect = 2e-60 Identities = 198/577 (34%), Positives = 272/577 (47%), Gaps = 64/577 (11%) Query: 38 AQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS----TIEAQ----VGIADLPWPAA 89 AQ ++G DP V LA A + G VC+ LS T EA I++ P P Sbjct: 21 AQFALTVAGNDDPAVTLAAALLSHDAGEGHVCLPLSRLTLTEEAHPLLVAWISETPTPI- 79 Query: 90 GEWLAAVRASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXX 146 +W + AS V SPA L L D L YL+R W E+ V Sbjct: 80 -DWKKRLLASAAVSCGDSPAPLILCGDRL-YLNRMWCNERTVARFFNEVNQAIAVDEDQL 137 Query: 147 XEV-NRLFPPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGK 203 + + LFPP E Q+ AA +AL + Sbjct: 138 SRILDALFPPTDEVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-- 195 Query: 204 ARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ-ATTLHRLLGSRPDTSSRF 262 R RI LAAPTGKAAARL E++ + + +L D Q+ R + A+TLHRLLG++P S R Sbjct: 196 -RCRIRLAAPTGKAAARLTESLGAALRQLPLTDAQKKRIPEDASTLHRLLGAQPG-SQRL 253 Query: 263 RHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL 322 RHH GN L DV+V+DE SM+ L MM+RL++A+ P R++ +GD DQLASVEAGAVL D+ Sbjct: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQLASVEAGAVLGDI 313 Query: 323 V--------------------DGLGARHDTHVAALR-------RLHRFG--ESIGQLAAA 353 + A T A+LR + +RFG IG+LAAA Sbjct: 314 CAYVNAGFTAERARQLSRLTGSAIPAGAGTQAASLRDSLCLLQKSYRFGSDSGIGKLAAA 373 Query: 354 IRGGDADRVVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXX 410 I GD + + + G IE ++ D L L + Sbjct: 374 INCGDRSAIQAVFQQGFSDIEKRTLQSSDDYAGMLDEALAGYGRYLRLLHEKATPEAILQ 433 Query: 411 XXXEQRLLCAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGV 468 E +LLCA R GP+G+ N ++++ + + S WY GRPV++ ND LG+ Sbjct: 434 AFNEYQLLCALREGPFGVRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGL 493 Query: 469 YNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQA 527 +NGD G+A+ G LRV +K SRL + +T AMT+HKSQGS+ Sbjct: 494 FNGDIGIALDRGQ-------GLRVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEF 546 Query: 528 DDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPE 564 D ++LP S ++TREL YTAVTRA R++ + E Sbjct: 547 DHAALILPSQRSPVVTRELVYTAVTRARRRLSLYADE 583 >tr|Q5PEM9|Q5PEM9_SALPA Tax_Id=54388 (recD)SubName: Full=Exonuclease V alpha-subunit;[Salmonella paratyphi A] Length = 611 Score = 236 bits (601), Expect = 8e-60 Identities = 197/577 (34%), Positives = 272/577 (47%), Gaps = 64/577 (11%) Query: 38 AQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS----TIEAQ----VGIADLPWPAA 89 AQ ++G DP V+LA A + G VC+ LS T EA I++ P Sbjct: 21 AQFALTVAGNDDPAVMLAAALLSHDAGEGHVCLPLSRLTLTEEAHPLLVAWISETATPI- 79 Query: 90 GEWLAAVRASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXX 146 +W + AS V SPA L L D L YL+R W E+ V Sbjct: 80 -DWKKRLLASAAVSCGDSPAPLILCGDRL-YLNRMWCNERTVARFFNEVNQAIAVDEDQL 137 Query: 147 XEV-NRLFPPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGK 203 + + LFPP E Q+ AA +AL + Sbjct: 138 SRILDALFPPTDEVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-- 195 Query: 204 ARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ-ATTLHRLLGSRPDTSSRF 262 R RI LAAPTGKAAARL E++ + + +L D Q+ R + A+TLHRLLG++P S R Sbjct: 196 -RCRIRLAAPTGKAAARLTESLGAALRQLPLTDAQKKRIPEDASTLHRLLGAQPG-SQRL 253 Query: 263 RHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL 322 RHH GN L DV+V+DE SM+ L MM+RL++A+ P R++ +GD DQLASVEAGAVL D+ Sbjct: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQLASVEAGAVLGDI 313 Query: 323 V--------------------DGLGARHDTHVAALR-------RLHRFG--ESIGQLAAA 353 + A T A+LR + +RFG IG+LAAA Sbjct: 314 CAYVNAGFTAERARQLSRLTGSAIPAGAGTQAASLRDSLCLLQKSYRFGSDSGIGKLAAA 373 Query: 354 IRGGDADRVVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXX 410 I GD + + + G IE ++ D L L + Sbjct: 374 INCGDRSAIQAVFQQGFSDIEKRTLQSSDDYAGMLDEALAGYGRYLRLLHEKATPEAILQ 433 Query: 411 XXXEQRLLCAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGV 468 E +LLCA R GP+G+ N ++++ + + S WY GRPV++ ND LG+ Sbjct: 434 AFNEYQLLCALREGPFGVRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGL 493 Query: 469 YNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQA 527 +NGD G+A+ G LRV +K SRL + +T AMT+HKSQGS+ Sbjct: 494 FNGDIGIALDRGQ-------GLRVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEF 546 Query: 528 DDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPE 564 D ++LP S ++TREL YTAVTRA R++ + E Sbjct: 547 DHAALILPSQRSPVVTRELVYTAVTRARRRLSLYADE 583 >tr|B5BFF8|B5BFF8_SALPK Tax_Id=554290 SubName: Full=Exonuclease V alpha-subunit;[Salmonella paratyphi A] Length = 611 Score = 236 bits (601), Expect = 8e-60 Identities = 197/577 (34%), Positives = 272/577 (47%), Gaps = 64/577 (11%) Query: 38 AQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS----TIEAQ----VGIADLPWPAA 89 AQ ++G DP V+LA A + G VC+ LS T EA I++ P Sbjct: 21 AQFALTVAGNDDPAVMLAAALLSHDAGEGHVCLPLSRLTLTEEAHPLLVAWISETATPI- 79 Query: 90 GEWLAAVRASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXX 146 +W + AS V SPA L L D L YL+R W E+ V Sbjct: 80 -DWKKRLLASAAVSCGDSPAPLILCGDRL-YLNRMWCNERTVARFFNEVNQAIAVDEDQL 137 Query: 147 XEV-NRLFPPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGK 203 + + LFPP E Q+ AA +AL + Sbjct: 138 SRILDALFPPTDEVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-- 195 Query: 204 ARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ-ATTLHRLLGSRPDTSSRF 262 R RI LAAPTGKAAARL E++ + + +L D Q+ R + A+TLHRLLG++P S R Sbjct: 196 -RCRIRLAAPTGKAAARLTESLGAALRQLPLTDAQKKRIPEDASTLHRLLGAQPG-SQRL 253 Query: 263 RHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL 322 RHH GN L DV+V+DE SM+ L MM+RL++A+ P R++ +GD DQLASVEAGAVL D+ Sbjct: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQLASVEAGAVLGDI 313 Query: 323 V--------------------DGLGARHDTHVAALR-------RLHRFG--ESIGQLAAA 353 + A T A+LR + +RFG IG+LAAA Sbjct: 314 CAYVNAGFTAERARQLSRLTGSAIPAGAGTQAASLRDSLCLLQKSYRFGSDSGIGKLAAA 373 Query: 354 IRGGDADRVVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXX 410 I GD + + + G IE ++ D L L + Sbjct: 374 INCGDRSAIQAVFQQGFSDIEKRTLQSSDDYAGMLDEALAGYGRYLRLLHEKATPEAILQ 433 Query: 411 XXXEQRLLCAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGV 468 E +LLCA R GP+G+ N ++++ + + S WY GRPV++ ND LG+ Sbjct: 434 AFNEYQLLCALREGPFGVRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGL 493 Query: 469 YNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQA 527 +NGD G+A+ G LRV +K SRL + +T AMT+HKSQGS+ Sbjct: 494 FNGDIGIALDRGQ-------GLRVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEF 546 Query: 528 DDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPE 564 D ++LP S ++TREL YTAVTRA R++ + E Sbjct: 547 DHAALILPSQRSPVVTRELVYTAVTRARRRLSLYADE 583 >tr|Q8Z420|Q8Z420_SALTI Tax_Id=90370 (recD)SubName: Full=Exonuclease V alpha-subunit;[Salmonella typhi] Length = 611 Score = 234 bits (598), Expect = 2e-59 Identities = 197/577 (34%), Positives = 271/577 (46%), Gaps = 64/577 (11%) Query: 38 AQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS----TIEAQ----VGIADLPWPAA 89 AQ ++G DP V LA A + G VC+ LS T EA I++ P Sbjct: 21 AQFALTVAGNDDPAVTLAAALLSHDAGEGHVCLPLSRLTLTEEAHPLLVAWISETATPI- 79 Query: 90 GEWLAAVRASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXX 146 +W + AS V SPA L L D L YL+R W E+ V Sbjct: 80 -DWKKRLLASAAVSCGDSPAPLILCGDRL-YLNRMWCNERTVARFFNEVNQAIAVDEDQL 137 Query: 147 XEV-NRLFPPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGK 203 + + LFPP E Q+ AA +AL + Sbjct: 138 SRILDALFPPTDEVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-- 195 Query: 204 ARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ-ATTLHRLLGSRPDTSSRF 262 R RI LAAPTGKAAARL E++ + + +L D Q+ R + A+TLHRLLG++P S R Sbjct: 196 -RCRIRLAAPTGKAAARLTESLGAALRQLPLTDAQKKRIPEDASTLHRLLGAQPG-SQRL 253 Query: 263 RHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL 322 RHH GN L DV+V+DE SM+ L MM+RL++A+ P R++ +GD DQLASVEAGAVL D+ Sbjct: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQLASVEAGAVLGDI 313 Query: 323 V--------------------DGLGARHDTHVAALR-------RLHRFG--ESIGQLAAA 353 + A T A+LR + +RFG IG+LAAA Sbjct: 314 CAYVNAGFTAERARQLSRLTGSAIPAGAGTQAASLRDSLCLLQKSYRFGSDSGIGKLAAA 373 Query: 354 IRGGDADRVVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXX 410 I GD + + + G IE ++ D L L + Sbjct: 374 INCGDRSAIQAVFQQGFSDIEKRTLQSSDDYAGMLDEALAGYGRYLRLLHEKAAPEAILQ 433 Query: 411 XXXEQRLLCAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGV 468 E +LLCA R GP+G+ N ++++ + + S WY GRPV++ ND LG+ Sbjct: 434 AFNEYQLLCALREGPFGVRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGL 493 Query: 469 YNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQA 527 +NGD G+A+ G LRV +K SRL + +T AMT+HKSQGS+ Sbjct: 494 FNGDIGIALDRGQ-------GLRVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEF 546 Query: 528 DDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPE 564 D ++LP S ++TREL YTAVTRA R++ + E Sbjct: 547 DHAALILPSQRSPVVTRELVYTAVTRARRRLSLYADE 583 >tr|B5F4T6|B5F4T6_SALA4 Tax_Id=454166 (recD)SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Salmonella agona] Length = 611 Score = 234 bits (598), Expect = 2e-59 Identities = 197/577 (34%), Positives = 271/577 (46%), Gaps = 64/577 (11%) Query: 38 AQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS----TIEAQ----VGIADLPWPAA 89 AQ ++G DP V LA A + G VC+ LS T EA I++ P Sbjct: 21 AQFALTVAGNDDPAVTLAAALLSHDAGEGHVCLPLSRLTLTEEAHPLLVAWISETATPI- 79 Query: 90 GEWLAAVRASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXX 146 +W + AS V SPA L L D L YL+R W E+ V Sbjct: 80 -DWKKRLLASAAVSCGDSPAPLILCGDRL-YLNRMWCNERTVARFFNEVNQAIAVDEDQL 137 Query: 147 XEV-NRLFPPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGK 203 + + LFPP E Q+ AA +AL + Sbjct: 138 SRILDALFPPTDEVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-- 195 Query: 204 ARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ-ATTLHRLLGSRPDTSSRF 262 R RI LAAPTGKAAARL E++ + + +L D Q+ R + A+TLHRLLG++P S R Sbjct: 196 -RCRIRLAAPTGKAAARLTESLGAALRQLPLTDAQKKRIPEDASTLHRLLGAQPG-SQRL 253 Query: 263 RHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL 322 RHH GN L DV+V+DE SM+ L MM+RL++A+ P R++ +GD DQLASVEAGAVL D+ Sbjct: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQLASVEAGAVLGDI 313 Query: 323 V--------------------DGLGARHDTHVAALR-------RLHRFG--ESIGQLAAA 353 + A T A+LR + +RFG IG+LAAA Sbjct: 314 CAYVNAGFTAERARQLSRLTGSAIPAGAGTQAASLRDSLCLLQKSYRFGSDSGIGKLAAA 373 Query: 354 IRGGDADRVVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXX 410 I GD + + + G IE ++ D L L + Sbjct: 374 INCGDRSAIQAVFQQGFSDIEKRTLQSSDDYAGMLDEALAGYGRYLRLLHEKATPEAILQ 433 Query: 411 XXXEQRLLCAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGV 468 E +LLCA R GP+G+ N ++++ + + S WY GRPV++ ND LG+ Sbjct: 434 AFNEYQLLCALREGPFGVRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGL 493 Query: 469 YNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQA 527 +NGD G+A+ G LRV +K SRL + +T AMT+HKSQGS+ Sbjct: 494 FNGDIGIALDRGQ-------GLRVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEF 546 Query: 528 DDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPE 564 D ++LP S ++TREL YTAVTRA R++ + E Sbjct: 547 DHAALILPSQRSPVVTRELVYTAVTRARRRLSLYADE 583 >tr|B4TUL0|B4TUL0_SALSV Tax_Id=439843 (recD)SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Salmonella schwarzengrund] Length = 611 Score = 234 bits (598), Expect = 2e-59 Identities = 197/577 (34%), Positives = 271/577 (46%), Gaps = 64/577 (11%) Query: 38 AQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS----TIEAQ----VGIADLPWPAA 89 AQ ++G DP V LA A + G VC+ LS T EA I++ P Sbjct: 21 AQFALTVAGNDDPAVTLAAALLSHDAGEGHVCLPLSRLTLTEEAHPLLVAWISETATPI- 79 Query: 90 GEWLAAVRASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXX 146 +W + AS V SPA L L D L YL+R W E+ V Sbjct: 80 -DWKKRLLASAAVSCGDSPAPLILCGDRL-YLNRMWCNERTVARFFNEVNQAIAVDEDQL 137 Query: 147 XEV-NRLFPPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGK 203 + + LFPP E Q+ AA +AL + Sbjct: 138 SRILDALFPPTDEVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-- 195 Query: 204 ARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ-ATTLHRLLGSRPDTSSRF 262 R RI LAAPTGKAAARL E++ + + +L D Q+ R + A+TLHRLLG++P S R Sbjct: 196 -RCRIRLAAPTGKAAARLTESLGAALRQLPLTDAQKKRIPEDASTLHRLLGAQPG-SQRL 253 Query: 263 RHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL 322 RHH GN L DV+V+DE SM+ L MM+RL++A+ P R++ +GD DQLASVEAGAVL D+ Sbjct: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQLASVEAGAVLGDI 313 Query: 323 V--------------------DGLGARHDTHVAALR-------RLHRFG--ESIGQLAAA 353 + A T A+LR + +RFG IG+LAAA Sbjct: 314 CAYVNAGFTAERARQLSRLTGSAIPAGAGTQAASLRDSLCLLQKSYRFGSDSGIGKLAAA 373 Query: 354 IRGGDADRVVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXX 410 I GD + + + G IE ++ D L L + Sbjct: 374 INCGDRSAIQAVFQQGFSDIEKRTLQSSDDYAGMLDEALAGYGRYLRLLHEKATPEAILQ 433 Query: 411 XXXEQRLLCAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGV 468 E +LLCA R GP+G+ N ++++ + + S WY GRPV++ ND LG+ Sbjct: 434 AFNEYQLLCALREGPFGVRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGL 493 Query: 469 YNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQA 527 +NGD G+A+ G LRV +K SRL + +T AMT+HKSQGS+ Sbjct: 494 FNGDIGIALDRGQ-------GLRVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEF 546 Query: 528 DDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPE 564 D ++LP S ++TREL YTAVTRA R++ + E Sbjct: 547 DHAALILPSQRSPVVTRELVYTAVTRARRRLSLYADE 583 >tr|B5RDW9|B5RDW9_SALG2 Tax_Id=550538 (recD)SubName: Full=Exonuclease V alpha-subunit;[Salmonella gallinarum] Length = 611 Score = 233 bits (593), Expect = 7e-59 Identities = 196/577 (33%), Positives = 271/577 (46%), Gaps = 64/577 (11%) Query: 38 AQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS----TIEAQ----VGIADLPWPAA 89 AQ ++G DP V LA A + G VC+ LS T EA I++ P Sbjct: 21 AQFALTVAGNDDPAVTLAAALLSHDAGEGHVCLPLSRLTLTEEAHPLLVACISETATPI- 79 Query: 90 GEWLAAVRASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXX 146 +W + AS V SPA L L + L YL+R W E+ V Sbjct: 80 -DWKKRLLASAAVSCGDSPAPLILCGERL-YLNRMWCNERTVARFFNEVNQAIAVDEDQL 137 Query: 147 XEV-NRLFPPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGK 203 + + LFPP E Q+ AA +AL + Sbjct: 138 SRILDALFPPTDEVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-- 195 Query: 204 ARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ-ATTLHRLLGSRPDTSSRF 262 R RI LAAPTGKAAARL E++ + + +L D Q+ R + A+TLHRLLG++P S R Sbjct: 196 -RCRIRLAAPTGKAAARLTESLGAALRQLPLTDAQKKRIPEDASTLHRLLGAQPG-SQRL 253 Query: 263 RHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL 322 RHH GN L DV+V+DE SM+ L MM+RL++A+ P R++ +GD DQLASVEAGAVL D+ Sbjct: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQLASVEAGAVLGDI 313 Query: 323 V--------------------DGLGARHDTHVAALR-------RLHRFG--ESIGQLAAA 353 + A T A+LR + +RFG IG+LAAA Sbjct: 314 CAYVNAGFTAERARQLSRLTGSAIPAGAGTQAASLRDSLCLLQKSYRFGSDSGIGKLAAA 373 Query: 354 IRGGDADRVVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXX 410 I GD + + + G IE ++ D L L + Sbjct: 374 INCGDRSAIQAVFQQGFSDIEKRTLQSSDDYAGMLDEALAGYGRYLRLLHEKATPEAILQ 433 Query: 411 XXXEQRLLCAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGV 468 E +LLCA R GP+G+ N ++++ + + S WY GRPV++ ND LG+ Sbjct: 434 AFNEYQLLCALREGPFGVRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGL 493 Query: 469 YNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQA 527 +NGD G+A+ G LRV +K SRL + +T AMT+HKSQGS+ Sbjct: 494 FNGDIGIALDRGQ-------GLRVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEF 546 Query: 528 DDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPE 564 D ++LP S ++TREL YTAVTRA R++ + E Sbjct: 547 DHAALILPSQRSPVVTRELVYTAVTRARRRLSLYADE 583 >tr|B5QWS5|B5QWS5_SALEP Tax_Id=550537 (recD)SubName: Full=Exonuclease V alpha-subunit;[Salmonella enteritidis PT4] Length = 611 Score = 233 bits (593), Expect = 7e-59 Identities = 196/577 (33%), Positives = 271/577 (46%), Gaps = 64/577 (11%) Query: 38 AQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS----TIEAQ----VGIADLPWPAA 89 AQ ++G DP V LA A + G VC+ LS T EA I++ P Sbjct: 21 AQFALTVAGNDDPAVTLAAALLSHDAGEGHVCLPLSRLTLTEEAHPLLVACISETATPI- 79 Query: 90 GEWLAAVRASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXX 146 +W + AS V SPA L L + L YL+R W E+ V Sbjct: 80 -DWKKRLLASAAVSCGDSPAPLILCGERL-YLNRMWCNERTVARFFNEVNQAIAVDEDQL 137 Query: 147 XEV-NRLFPPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGK 203 + + LFPP E Q+ AA +AL + Sbjct: 138 SRILDALFPPTDEVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-- 195 Query: 204 ARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ-ATTLHRLLGSRPDTSSRF 262 R RI LAAPTGKAAARL E++ + + +L D Q+ R + A+TLHRLLG++P S R Sbjct: 196 -RCRIRLAAPTGKAAARLTESLGAALRQLPLTDAQKKRIPEDASTLHRLLGAQPG-SQRL 253 Query: 263 RHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL 322 RHH GN L DV+V+DE SM+ L MM+RL++A+ P R++ +GD DQLASVEAGAVL D+ Sbjct: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQLASVEAGAVLGDI 313 Query: 323 V--------------------DGLGARHDTHVAALR-------RLHRFG--ESIGQLAAA 353 + A T A+LR + +RFG IG+LAAA Sbjct: 314 CAYVNAGFTAERARQLSRLTGSAIPAGAGTQAASLRDSLCLLQKSYRFGSDSGIGKLAAA 373 Query: 354 IRGGDADRVVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXX 410 I GD + + + G IE ++ D L L + Sbjct: 374 INCGDRSAIQAVFQQGFSDIEKRTLQSSDDYAGMLDEALAGYGRYLRLLHEKATPEAILQ 433 Query: 411 XXXEQRLLCAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGV 468 E +LLCA R GP+G+ N ++++ + + S WY GRPV++ ND LG+ Sbjct: 434 AFNEYQLLCALREGPFGVRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGL 493 Query: 469 YNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQA 527 +NGD G+A+ G LRV +K SRL + +T AMT+HKSQGS+ Sbjct: 494 FNGDIGIALDRGQ-------GLRVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEF 546 Query: 528 DDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPE 564 D ++LP S ++TREL YTAVTRA R++ + E Sbjct: 547 DHAALILPSQRSPVVTRELVYTAVTRARRRLSLYADE 583 >tr|B5FTZ4|B5FTZ4_SALDC Tax_Id=439851 (recD)SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Salmonella dublin] Length = 611 Score = 233 bits (593), Expect = 7e-59 Identities = 196/577 (33%), Positives = 271/577 (46%), Gaps = 64/577 (11%) Query: 38 AQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS----TIEAQ----VGIADLPWPAA 89 AQ ++G DP V LA A + G VC+ LS T EA I++ P Sbjct: 21 AQFALTVAGNDDPAVTLAAALLSHDAGEGHVCLPLSRLTLTEEAHPLLVACISETATPI- 79 Query: 90 GEWLAAVRASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXX 146 +W + AS V SPA L L + L YL+R W E+ V Sbjct: 80 -DWKKRLLASAAVSCGDSPAPLILCGERL-YLNRMWCNERTVARFFNEVNQAIAVDEDQL 137 Query: 147 XEV-NRLFPPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGK 203 + + LFPP E Q+ AA +AL + Sbjct: 138 SRILDALFPPTDEVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-- 195 Query: 204 ARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ-ATTLHRLLGSRPDTSSRF 262 R RI LAAPTGKAAARL E++ + + +L D Q+ R + A+TLHRLLG++P S R Sbjct: 196 -RCRIRLAAPTGKAAARLTESLGAALRQLPLTDAQKKRIPEDASTLHRLLGAQPG-SQRL 253 Query: 263 RHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL 322 RHH GN L DV+V+DE SM+ L MM+RL++A+ P R++ +GD DQLASVEAGAVL D+ Sbjct: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQLASVEAGAVLGDI 313 Query: 323 V--------------------DGLGARHDTHVAALR-------RLHRFG--ESIGQLAAA 353 + A T A+LR + +RFG IG+LAAA Sbjct: 314 CAYVNAGFTAERARQLSRLTGSAIPAGAGTQAASLRDSLCLLQKSYRFGSDSGIGKLAAA 373 Query: 354 IRGGDADRVVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXX 410 I GD + + + G IE ++ D L L + Sbjct: 374 INCGDRSAIQAVFQQGFSDIEKRTLQSSDDYAGMLDEALAGYGRYLRLLHEKATPEAILQ 433 Query: 411 XXXEQRLLCAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGV 468 E +LLCA R GP+G+ N ++++ + + S WY GRPV++ ND LG+ Sbjct: 434 AFNEYQLLCALREGPFGVRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGL 493 Query: 469 YNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQA 527 +NGD G+A+ G LRV +K SRL + +T AMT+HKSQGS+ Sbjct: 494 FNGDIGIALDRGQ-------GLRVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEF 546 Query: 528 DDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPE 564 D ++LP S ++TREL YTAVTRA R++ + E Sbjct: 547 DHAALILPSQRSPVVTRELVYTAVTRARRRLSLYADE 583 >tr|B3ECZ3|B3ECZ3_CHLL2 Tax_Id=290315 SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Chlorobium limicola] Length = 588 Score = 232 bits (592), Expect = 9e-59 Identities = 191/582 (32%), Positives = 274/582 (47%), Gaps = 44/582 (7%) Query: 34 DVHVAQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEAQV-----GIADLPWPA 88 D +A+ L + V+ ++ + +A+ G+VC+DL + +V L P Sbjct: 11 DRQIAEYLCRSINDETGVMRTVVSLLSQAVGQGNVCLDLEEVAGEVVRIPGREEPLRLPD 70 Query: 89 AGEWLAAVRASPLVGSPAVLR---LHEDNLVYLDRYWREEQ---QVXXXXXXXXXXXXXX 142 ++A+R+ VG P R L E +YL RY+R ++ + Sbjct: 71 IERLVSALRSLHTVGRPGEHRPLILDEAGRLYLYRYFRYQETLAEAILARAATETGSPDE 130 Query: 143 XXXXXEVNRLFPP---GYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 199 ++R F P G + QR AA AL + Sbjct: 131 AALSESLDRYFGPDESGEDRQRQAALTALRRGFSVISGGPGTGKTTTVVRILGLMLEQP- 189 Query: 200 XXGKARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQ-QRVRGLQATTLHRLLGSRPDT 258 G R+RIA+AAPTGKAAARL ++ S + L ++ +R Q TT+HRLLG+ P+ Sbjct: 190 --GGERMRIAMAAPTGKAAARLASSIASLRETLPCSEEVKRHLPGQVTTIHRLLGTIPN- 246 Query: 259 SSRFRHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAV 318 S+ FRH+ N LP+D I++DE SMV L +M L+ A+ P RL+L+GD DQLASVEAGAV Sbjct: 247 STGFRHNARNPLPYDTIIVDEASMVDLPLMTALVTALMPHARLILIGDRDQLASVEAGAV 306 Query: 319 LADLVDGLGARHDTH------VAALRRLHRFGE--SIGQLAAAIRGGDADRVVEILRAGD 370 L D+ + V L R +RFG+ I L+ AI GDA + +L Sbjct: 307 LGDICRAAESSGSAAFSIKGCVTVLDRNYRFGDGSGIASLSRAINSGDAGEALRLLGDPA 366 Query: 371 DHIEWINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQ-RLLCAHRRGPYGIA 429 + + A +R L LE + R+L A R GP+G A Sbjct: 367 NTTIALEATPTREAVRKRLAARVLEGFRPYLEAETPEEALRLFDHFRILTALREGPWGAA 426 Query: 430 HWNHQVQRWLTEATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLD---GTNRA-- 484 NH V+ L EA + +Y GRPVLVT NDY ++NGDTG+ + D G +A Sbjct: 427 GMNHTVETLLHEAGLLTASTPFYRGRPVLVTENDYTHKLFNGDTGIILPDPETGKQKAYF 486 Query: 485 -AAPGALRVLIAGAQEPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLT 543 A+ G +R + P +F + + T AMT+HKSQGS+ D V ++LPP D+ LLT Sbjct: 487 IASDGTVRSI------PPEFLPAHV----TAFAMTVHKSQGSEFDRVLMVLPPEDTILLT 536 Query: 544 RELFYTAVTRAARKVRIVGPECDVXXXXXXXXXXXTGLRSRL 585 REL YT +TRA + V + E +GLR L Sbjct: 537 RELIYTGITRARQAVTVWSDETVFSASVKRRTERRSGLREML 578 >tr|Q8KDI0|Q8KDI0_CHLTE Tax_Id=1097 (recD)SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Chlorobium tepidum] Length = 577 Score = 232 bits (591), Expect = 1e-58 Identities = 195/567 (34%), Positives = 272/567 (47%), Gaps = 43/567 (7%) Query: 47 ESDPVVLLAIAFVVRALRGGSVCVDLSTI-EAQVGIADLPWPA-----AGEWLAAVRASP 100 E+ ++ ++ + +A+ G VC+DL I E V I + P +AA+R+ P Sbjct: 23 ENAELLRTVVSLLSQAVGQGHVCLDLEEIAEELVRIPEREEPLRLLPDVASLIAALRSLP 82 Query: 101 LVGSPAV---LRLHEDNLVYLDRYWREEQ---QVXXXXXXXXXXXXXXXXXXXEVNRLF- 153 +G P L L +YL RY+R E + ++R F Sbjct: 83 TLGGPGEHCPLILDAAGRLYLYRYFRYETLLAEAIRARAASVSLEIDEAALAARLDRYFG 142 Query: 154 --PPGYEEQRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKARLRIALA 211 G + QR AA AL + G+AR+RIA+A Sbjct: 143 VDKSGEDRQRQAALAALRRHFSVISGGPGTGKTTTVVRILGLLLEQP---GEARMRIAMA 199 Query: 212 APTGKAAARLHEAVQSQIDKLDAIDQ-QRVRGLQATTLHRLLGSRPDTSSRFRHHRGNRL 270 APTGKAAARL ++ S + L D+ +R Q TT+HRLLG+ P S+ FRH+ N L Sbjct: 200 APTGKAAARLASSITSLREALPCADEVKRAIPSQVTTIHRLLGTIPG-STGFRHNERNPL 258 Query: 271 PHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL---VDGLG 327 P DV+++DE SMV L +M L+ A+ P RL+L+GD DQLASVEAGAVL D+ + Sbjct: 259 PCDVVIVDEASMVDLPLMTALVTALPPHARLILIGDRDQLASVEAGAVLGDICCAAESPV 318 Query: 328 ARHDTHVAALRRLHRFGE--SIGQLAAAIRGGDADRVVEILRAGDDHIEWINAADPTPQL 385 + V L R +RFG+ I L+ A+ GD + + I + A + Sbjct: 319 SFIAGCVTVLDRNYRFGDGSGIAALSRAVNAGDHSEALRLFADSGSGIA-LEATPTRETI 377 Query: 386 RNVLLPHALEXXXXXXXXXXXXXXXXXXEQ-RLLCAHRRGPYGIAHWNHQVQRWLTEATG 444 + L+ LE ++ R+L A R GP+G + NH + +L EA Sbjct: 378 KKRLVAPVLEGFRPCLEAKTPAEALRLFDRFRILTALREGPWGASGINHAAETFLNEAGL 437 Query: 445 EPIWSSWYAGRPVLVTANDYGLGVYNGDTGVAVLD---GTNRA--AAP-GALRVLIAGAQ 498 + S +Y GRPVLVT NDY ++NGDTG+ + D G RA AAP G +R + Sbjct: 438 IRLDSQFYRGRPVLVTENDYNHKLFNGDTGIMLPDPETGNLRAFFAAPDGTVRAI----- 492 Query: 499 EPLKFATSRLSDVETMHAMTIHKSQGSQADDVTVLLPPADSRLLTRELFYTAVTRAARKV 558 P +F L ET AMT+HKSQGS+ D V ++LPP DS LLTREL YT +TRA + V Sbjct: 493 -PPEF----LPKHETAFAMTVHKSQGSEFDRVLMVLPPEDSVLLTRELIYTGITRAKQSV 547 Query: 559 RIVGPECDVXXXXXXXXXXXTGLRSRL 585 I +GLR RL Sbjct: 548 TIWSDAAVFSAAVKRRTERRSGLRERL 574 >tr|Q8X6N0|Q8X6N0_ECO57 Tax_Id=83334 (recD)SubName: Full=DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease;[Escherichia coli O157:H7] Length = 608 Score = 231 bits (589), Expect = 2e-58 Identities = 191/569 (33%), Positives = 264/569 (46%), Gaps = 60/569 (10%) Query: 44 MSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEAQVGIADLPWPAAGE------WLAAVR 97 ++G+ P V LA A + G VC+ LS +E L E W + Sbjct: 27 VAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEESHPLLATCVSEIGELQNWEECLL 86 Query: 98 ASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXXXE-VNRLF 153 AS V P + L D L YL+R W E+ V + +++LF Sbjct: 87 ASQAVSRGDEPTPMILCGDRL-YLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLF 145 Query: 154 PPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKARLRIALA 211 P G E Q+ AA +AL + R RI LA Sbjct: 146 PTGDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE---RCRIRLA 202 Query: 212 APTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ-ATTLHRLLGSRPDTSSRFRHHRGNRL 270 APTGKAAARL E++ + +L D+Q+ R + A+TLHRLLG++P S R RHH GN L Sbjct: 203 APTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPG-SQRLRHHAGNPL 261 Query: 271 PHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL-------- 322 DV+V+DE SM+ L MM+RL++A+ R++ +GD DQLASVEAGAVL D+ Sbjct: 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF 321 Query: 323 ----VDGLGARHDTHVAA---------------LRRLHRFG--ESIGQLAAAIRGGDADR 361 L THV A L++ +RFG IGQLAAAI GD Sbjct: 322 TAERAGQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTA 381 Query: 362 VVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLL 418 V + + IE + D L L + E +LL Sbjct: 382 VKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLL 441 Query: 419 CAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVA 476 CA R GP+G+A N ++++++ + S WY GRPV++ ND LG++NGD G+A Sbjct: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRNPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 Query: 477 VLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQADDVTVLLP 535 + G RV A +K SRL + ET AMT+HKSQGS+ D ++LP Sbjct: 502 LDRGQ-------GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 Query: 536 PADSRLLTRELFYTAVTRAARKVRIVGPE 564 + ++TREL YTAVTRA R++ + E Sbjct: 555 SQRTPVVTRELVYTAVTRARRRLSLYADE 583 >tr|Q57KC5|Q57KC5_SALCH Tax_Id=28901 (recD)SubName: Full=Exonuclease V, alpha chain;[Salmonella choleraesuis] Length = 611 Score = 231 bits (589), Expect = 2e-58 Identities = 195/577 (33%), Positives = 269/577 (46%), Gaps = 64/577 (11%) Query: 38 AQRLAAMSGESDPVVLLAIAFVVRALRGGSVCVDLS----TIEAQ----VGIADLPWPAA 89 AQ ++G DP V LA A + G VC+ LS T EA I++ P Sbjct: 21 AQFALTVAGNDDPAVTLAAALLSHDAGEGHVCLPLSRLTLTEEAHPLLVAWISETATPI- 79 Query: 90 GEWLAAVRASPLVGS---PAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXX 146 +W + S V PA L L D L YL+R W E+ V Sbjct: 80 -DWKKRLLESAAVSCGDRPAPLILCGDRL-YLNRMWCNERTVARFFNEVNQAIAVDEDQL 137 Query: 147 XEV-NRLFPPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGK 203 + + LFPP E Q+ AA +AL + Sbjct: 138 SRILDALFPPTEEVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-- 195 Query: 204 ARLRIALAAPTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ-ATTLHRLLGSRPDTSSRF 262 R RI LAAPTGKAAARL E++ + + +L D Q+ R + A+TLHRLLG++P S R Sbjct: 196 -RCRIRLAAPTGKAAARLTESLGAALRQLPLTDAQKKRIPEDASTLHRLLGAQPG-SQRL 253 Query: 263 RHHRGNRLPHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL 322 RHH GN L DV+V+DE SM+ L MM+RL++A+ P R++ +GD DQLASVEAGAVL D+ Sbjct: 254 RHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPPHGRVIFLGDRDQLASVEAGAVLGDI 313 Query: 323 V--------------------DGLGARHDTHVAALR-------RLHRFG--ESIGQLAAA 353 + A T A+LR + +RFG IG+LAAA Sbjct: 314 CAYVNAGFTAERARQLSRLTGSAIPAGAGTQAASLRDSLCLLQKSYRFGSDSGIGKLAAA 373 Query: 354 IRGGDADRVVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXX 410 I GD + + + G IE ++ D L L + Sbjct: 374 INCGDRSAIQAVFQQGFSDIEKRTLQSSDDYAGMLDEALAGYGRYLRLLHEKATPEAILQ 433 Query: 411 XXXEQRLLCAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGV 468 E +LLCA R GP+G+ N ++++ + + S WY GRPV++ ND LG+ Sbjct: 434 AFNEYQLLCALREGPFGVRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGL 493 Query: 469 YNGDTGVAVLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQA 527 +NGD G+A+ G LRV +K SRL + +T AMT+HKSQGS+ Sbjct: 494 FNGDIGIALDRGQ-------GLRVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEF 546 Query: 528 DDVTVLLPPADSRLLTRELFYTAVTRAARKVRIVGPE 564 D ++LP S ++TREL YTAVTRA R++ + E Sbjct: 547 DHAALILPSQRSPVVTRELVYTAVTRARRRLSLYADE 583 >tr|B5Z4D6|B5Z4D6_ECO5E Tax_Id=444450 (recD)SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Escherichia coli O157:H7] Length = 608 Score = 231 bits (589), Expect = 2e-58 Identities = 191/569 (33%), Positives = 264/569 (46%), Gaps = 60/569 (10%) Query: 44 MSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEAQVGIADLPWPAAGE------WLAAVR 97 ++G+ P V LA A + G VC+ LS +E L E W + Sbjct: 27 VAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEESHPLLATCVSEIGELQNWEECLL 86 Query: 98 ASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXXXE-VNRLF 153 AS V P + L D L YL+R W E+ V + +++LF Sbjct: 87 ASQAVSRGDEPTPMILCGDRL-YLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLF 145 Query: 154 PPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKARLRIALA 211 P G E Q+ AA +AL + R RI LA Sbjct: 146 PTGDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE---RCRIRLA 202 Query: 212 APTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ-ATTLHRLLGSRPDTSSRFRHHRGNRL 270 APTGKAAARL E++ + +L D+Q+ R + A+TLHRLLG++P S R RHH GN L Sbjct: 203 APTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPG-SQRLRHHAGNPL 261 Query: 271 PHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL-------- 322 DV+V+DE SM+ L MM+RL++A+ R++ +GD DQLASVEAGAVL D+ Sbjct: 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF 321 Query: 323 ----VDGLGARHDTHVAA---------------LRRLHRFG--ESIGQLAAAIRGGDADR 361 L THV A L++ +RFG IGQLAAAI GD Sbjct: 322 TAERAGQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTA 381 Query: 362 VVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLL 418 V + + IE + D L L + E +LL Sbjct: 382 VKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLL 441 Query: 419 CAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVA 476 CA R GP+G+A N ++++++ + S WY GRPV++ ND LG++NGD G+A Sbjct: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRNPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 Query: 477 VLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQADDVTVLLP 535 + G RV A +K SRL + ET AMT+HKSQGS+ D ++LP Sbjct: 502 LDRGQ-------GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 Query: 536 PADSRLLTRELFYTAVTRAARKVRIVGPE 564 + ++TREL YTAVTRA R++ + E Sbjct: 555 SQRTPVVTRELVYTAVTRARRRLSLYADE 583 >tr|Q7AB61|Q7AB61_ECO57 Tax_Id=83334 SubName: Full=DNA helicase RecD;[Escherichia coli O157:H7] Length = 608 Score = 231 bits (589), Expect = 2e-58 Identities = 191/569 (33%), Positives = 264/569 (46%), Gaps = 60/569 (10%) Query: 44 MSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEAQVGIADLPWPAAGE------WLAAVR 97 ++G+ P V LA A + G VC+ LS +E L E W + Sbjct: 27 VAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEESHPLLATCVSEIGELQNWEECLL 86 Query: 98 ASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXXXE-VNRLF 153 AS V P + L D L YL+R W E+ V + +++LF Sbjct: 87 ASQAVSRGDEPTPMILCGDRL-YLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLF 145 Query: 154 PPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKARLRIALA 211 P G E Q+ AA +AL + R RI LA Sbjct: 146 PTGDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE---RCRIRLA 202 Query: 212 APTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ-ATTLHRLLGSRPDTSSRFRHHRGNRL 270 APTGKAAARL E++ + +L D+Q+ R + A+TLHRLLG++P S R RHH GN L Sbjct: 203 APTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPG-SQRLRHHAGNPL 261 Query: 271 PHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL-------- 322 DV+V+DE SM+ L MM+RL++A+ R++ +GD DQLASVEAGAVL D+ Sbjct: 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF 321 Query: 323 ----VDGLGARHDTHVAA---------------LRRLHRFG--ESIGQLAAAIRGGDADR 361 L THV A L++ +RFG IGQLAAAI GD Sbjct: 322 TAERAGQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTA 381 Query: 362 VVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLL 418 V + + IE + D L L + E +LL Sbjct: 382 VKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLL 441 Query: 419 CAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVA 476 CA R GP+G+A N ++++++ + S WY GRPV++ ND LG++NGD G+A Sbjct: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRNPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 Query: 477 VLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQADDVTVLLP 535 + G RV A +K SRL + ET AMT+HKSQGS+ D ++LP Sbjct: 502 LDRGQ-------GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 Query: 536 PADSRLLTRELFYTAVTRAARKVRIVGPE 564 + ++TREL YTAVTRA R++ + E Sbjct: 555 SQRTPVVTRELVYTAVTRARRRLSLYADE 583 >tr|C6USD2|C6USD2_ECO5T Tax_Id=544404 (recD)SubName: Full=Exonuclease V (RecBCD complex), alpha chain;[Escherichia coli O157:H7] Length = 608 Score = 231 bits (589), Expect = 2e-58 Identities = 191/569 (33%), Positives = 264/569 (46%), Gaps = 60/569 (10%) Query: 44 MSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEAQVGIADLPWPAAGE------WLAAVR 97 ++G+ P V LA A + G VC+ LS +E L E W + Sbjct: 27 VAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEESHPLLATCVSEIGELQNWEECLL 86 Query: 98 ASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXXXE-VNRLF 153 AS V P + L D L YL+R W E+ V + +++LF Sbjct: 87 ASQAVSRGDEPTPMILCGDRL-YLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLF 145 Query: 154 PPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKARLRIALA 211 P G E Q+ AA +AL + R RI LA Sbjct: 146 PTGDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE---RCRIRLA 202 Query: 212 APTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ-ATTLHRLLGSRPDTSSRFRHHRGNRL 270 APTGKAAARL E++ + +L D+Q+ R + A+TLHRLLG++P S R RHH GN L Sbjct: 203 APTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPG-SQRLRHHAGNPL 261 Query: 271 PHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL-------- 322 DV+V+DE SM+ L MM+RL++A+ R++ +GD DQLASVEAGAVL D+ Sbjct: 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF 321 Query: 323 ----VDGLGARHDTHVAA---------------LRRLHRFG--ESIGQLAAAIRGGDADR 361 L THV A L++ +RFG IGQLAAAI GD Sbjct: 322 TAERAGQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTA 381 Query: 362 VVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLL 418 V + + IE + D L L + E +LL Sbjct: 382 VKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLL 441 Query: 419 CAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVA 476 CA R GP+G+A N ++++++ + S WY GRPV++ ND LG++NGD G+A Sbjct: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRNPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 Query: 477 VLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQADDVTVLLP 535 + G RV A +K SRL + ET AMT+HKSQGS+ D ++LP Sbjct: 502 LDRGQ-------GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 Query: 536 PADSRLLTRELFYTAVTRAARKVRIVGPE 564 + ++TREL YTAVTRA R++ + E Sbjct: 555 SQRTPVVTRELVYTAVTRARRRLSLYADE 583 >tr|C3SWN7|C3SWN7_ECOLX Tax_Id=562 SubName: Full=DNA helicase RecD;[Escherichia coli] Length = 608 Score = 231 bits (589), Expect = 2e-58 Identities = 191/569 (33%), Positives = 264/569 (46%), Gaps = 60/569 (10%) Query: 44 MSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEAQVGIADLPWPAAGE------WLAAVR 97 ++G+ P V LA A + G VC+ LS +E L E W + Sbjct: 27 VAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEESHPLLATCVSEIGELQNWEECLL 86 Query: 98 ASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXXXE-VNRLF 153 AS V P + L D L YL+R W E+ V + +++LF Sbjct: 87 ASQAVSRGDEPTPMILCGDRL-YLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLF 145 Query: 154 PPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKARLRIALA 211 P G E Q+ AA +AL + R RI LA Sbjct: 146 PTGDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE---RCRIRLA 202 Query: 212 APTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ-ATTLHRLLGSRPDTSSRFRHHRGNRL 270 APTGKAAARL E++ + +L D+Q+ R + A+TLHRLLG++P S R RHH GN L Sbjct: 203 APTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPG-SQRLRHHAGNPL 261 Query: 271 PHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL-------- 322 DV+V+DE SM+ L MM+RL++A+ R++ +GD DQLASVEAGAVL D+ Sbjct: 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF 321 Query: 323 ----VDGLGARHDTHVAA---------------LRRLHRFG--ESIGQLAAAIRGGDADR 361 L THV A L++ +RFG IGQLAAAI GD Sbjct: 322 TAERAGQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTA 381 Query: 362 VVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLL 418 V + + IE + D L L + E +LL Sbjct: 382 VKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLL 441 Query: 419 CAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVA 476 CA R GP+G+A N ++++++ + S WY GRPV++ ND LG++NGD G+A Sbjct: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRNPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 Query: 477 VLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQADDVTVLLP 535 + G RV A +K SRL + ET AMT+HKSQGS+ D ++LP Sbjct: 502 LDRGQ-------GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 Query: 536 PADSRLLTRELFYTAVTRAARKVRIVGPE 564 + ++TREL YTAVTRA R++ + E Sbjct: 555 SQRTPVVTRELVYTAVTRARRRLSLYADE 583 >tr|B6ZVZ0|B6ZVZ0_ECO57 Tax_Id=502346 (recD)SubName: Full=Exodeoxyribonuclease V, alpha subunit; EC=3.1.11.5;[Escherichia coli O157:H7 str. TW14588] Length = 608 Score = 231 bits (589), Expect = 2e-58 Identities = 191/569 (33%), Positives = 264/569 (46%), Gaps = 60/569 (10%) Query: 44 MSGESDPVVLLAIAFVVRALRGGSVCVDLSTIEAQVGIADLPWPAAGE------WLAAVR 97 ++G+ P V LA A + G VC+ LS +E L E W + Sbjct: 27 VAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENNEESHPLLATCVSEIGELQNWEECLL 86 Query: 98 ASPLVG---SPAVLRLHEDNLVYLDRYWREEQQVXXXXXXXXXXXXXXXXXXXE-VNRLF 153 AS V P + L D L YL+R W E+ V + +++LF Sbjct: 87 ASQAVSRGDEPTPMILCGDRL-YLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLF 145 Query: 154 PPGYEE--QRAAAKIALAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKARLRIALA 211 P G E Q+ AA +AL + R RI LA Sbjct: 146 PTGDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE---RCRIRLA 202 Query: 212 APTGKAAARLHEAVQSQIDKLDAIDQQRVRGLQ-ATTLHRLLGSRPDTSSRFRHHRGNRL 270 APTGKAAARL E++ + +L D+Q+ R + A+TLHRLLG++P S R RHH GN L Sbjct: 203 APTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPG-SQRLRHHAGNPL 261 Query: 271 PHDVIVIDETSMVSLTMMARLLEAVRPQTRLLLVGDPDQLASVEAGAVLADL-------- 322 DV+V+DE SM+ L MM+RL++A+ R++ +GD DQLASVEAGAVL D+ Sbjct: 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF 321 Query: 323 ----VDGLGARHDTHVAA---------------LRRLHRFG--ESIGQLAAAIRGGDADR 361 L THV A L++ +RFG IGQLAAAI GD Sbjct: 322 TAERAGQLSRLTGTHVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTA 381 Query: 362 VVEILRAGDDHIE---WINAADPTPQLRNVLLPHALEXXXXXXXXXXXXXXXXXXEQRLL 418 V + + IE + D L L + E +LL Sbjct: 382 VKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLL 441 Query: 419 CAHRRGPYGIAHWNHQVQRWLTE--ATGEPIWSSWYAGRPVLVTANDYGLGVYNGDTGVA 476 CA R GP+G+A N ++++++ + S WY GRPV++ ND LG++NGD G+A Sbjct: 442 CALREGPFGVAGLNERIEQFMQQKRKIHRNPHSRWYEGRPVMIARNDSALGLFNGDIGIA 501 Query: 477 VLDGTNRAAAPGALRVLIAGAQEPLK-FATSRLSDVETMHAMTIHKSQGSQADDVTVLLP 535 + G RV A +K SRL + ET AMT+HKSQGS+ D ++LP Sbjct: 502 LDRGQ-------GTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILP 554 Query: 536 PADSRLLTRELFYTAVTRAARKVRIVGPE 564 + ++TREL YTAVTRA R++ + E Sbjct: 555 SQRTPVVTRELVYTAVTRARRRLSLYADE 583 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.320 0.134 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 3,727,070,450 Number of extensions: 141638373 Number of successful extensions: 380396 Number of sequences better than 10.0: 1893 Number of HSP's gapped: 378325 Number of HSP's successfully gapped: 3138 Length of query: 587 Length of database: 3,846,993,858 Length adjustment: 143 Effective length of query: 444 Effective length of database: 2,234,639,829 Effective search space: 992180084076 Effective search space used: 992180084076 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 83 (36.6 bits)