BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MMAR_0957
         (1110 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,275,203 sequences; 3,846,993,858 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|B2HSF6|B2HSF6_MYCMM Tax_Id=216594 (recB)SubName: Full=Exodeox...  1928   0.0  
tr|A0PLZ3|A0PLZ3_MYCUA Tax_Id=362242 (recB)SubName: Full=Exodeox...  1913   0.0  
tr|A0QL86|A0QL86_MYCA1 Tax_Id=243243 (recB)SubName: Full=Exodeox...  1401   0.0  
tr|A3PUY8|A3PUY8_MYCSJ Tax_Id=164757 SubName: Full=Exodeoxyribon...  1369   0.0  
tr|Q1BDL8|Q1BDL8_MYCSS Tax_Id=164756 SubName: Full=DNA helicase/...  1354   0.0  
tr|A1UBC3|A1UBC3_MYCSK Tax_Id=189918 SubName: Full=DNA helicase/...  1354   0.0  
tr|A1T4E4|A1T4E4_MYCVP Tax_Id=350058 SubName: Full=DNA helicase/...  1347   0.0  
tr|A4T1L3|A4T1L3_MYCGI Tax_Id=350054 SubName: Full=DNA helicase/...  1320   0.0  
tr|B1MFU8|B1MFU8_MYCA9 Tax_Id=561007 SubName: Full=Exodeoxyribon...  1315   0.0  
tr|A0QS29|A0QS29_MYCS2 Tax_Id=246196 (recB)SubName: Full=Exodeox...  1315   0.0  
tr|Q9RPH6|Q9RPH6_MYCSM Tax_Id=1772 (recB)SubName: Full=RecB;[Myc...  1315   0.0  
sp|P96920|EX5B_MYCTU Tax_Id=1773 (recB)RecName: Full=Exodeoxyrib...  1180   0.0  
tr|C6DU07|C6DU07_MYCTK Tax_Id=478434 SubName: Full=Exonuclease s...  1180   0.0  
tr|A5U013|A5U013_MYCTA Tax_Id=419947 (recB)SubName: Full=Exodeox...  1180   0.0  
tr|A5WJZ5|A5WJZ5_MYCTF Tax_Id=336982 SubName: Full=Exonuclease V...  1180   0.0  
tr|C1WNL3|C1WNL3_9ACTO Tax_Id=479435 SubName: Full=Exodeoxyribon...  1026   0.0  
tr|A1SDB2|A1SDB2_NOCSJ Tax_Id=196162 SubName: Full=Exodeoxyribon...   931   0.0  
tr|Q7U1L0|Q7U1L0_MYCBO Tax_Id=1765 (recBa)SubName: Full=PROBABLE...   921   0.0  
tr|C1AKW1|C1AKW1_MYCBT Tax_Id=561275 (recBa)SubName: Full=Putati...   919   0.0  
tr|A1KGA8|A1KGA8_MYCBP Tax_Id=410289 (recBa)SubName: Full=Probab...   919   0.0  
tr|C8XGW9|C8XGW9_NAKMY Tax_Id=479431 SubName: Full=Exodeoxyribon...   822   0.0  
tr|Q73SI1|Q73SI1_MYCPA Tax_Id=1770 SubName: Full=Putative unchar...   789   0.0  
tr|A6W6P2|A6W6P2_KINRD Tax_Id=266940 SubName: Full=Exodeoxyribon...   685   0.0  
tr|C1AXR2|C1AXR2_RHOOB Tax_Id=632772 (recB)SubName: Full=Exodeox...   684   0.0  
tr|Q0SFN8|Q0SFN8_RHOSR Tax_Id=101510 SubName: Full=Exodeoxyribon...   675   0.0  
tr|Q5YWP8|Q5YWP8_NOCFA Tax_Id=37329 (recB)SubName: Full=Putative...   668   0.0  
tr|C3JUW9|C3JUW9_RHOER Tax_Id=596309 (recB)SubName: Full=Exodeox...   665   0.0  
tr|C0ZQ88|C0ZQ88_RHOE4 Tax_Id=234621 (recB)SubName: Full=Exodeox...   665   0.0  
tr|C2AQM6|C2AQM6_TSUPA Tax_Id=521096 SubName: Full=ATP-dependent...   628   e-177
tr|D0L8X3|D0L8X3_GORB4 Tax_Id=526226 SubName: Full=Exodeoxyribon...   565   e-158
tr|C1RHS1|C1RHS1_9CELL Tax_Id=446466 SubName: Full=Exodeoxyribon...   563   e-158
tr|Q73SI0|Q73SI0_MYCPA Tax_Id=1770 SubName: Full=Putative unchar...   481   e-133
tr|Q6A850|Q6A850_PROAC Tax_Id=1747 SubName: Full=Exodeoxyribonuc...   404   e-110
tr|C6MV57|C6MV57_9DELT Tax_Id=443143 SubName: Full=Exodeoxyribon...   336   1e-89
tr|B5EAR6|B5EAR6_GEOBB Tax_Id=404380 SubName: Full=Exodeoxyribon...   331   3e-88
tr|C6DYD0|C6DYD0_GEOSM Tax_Id=443144 SubName: Full=Exodeoxyribon...   327   6e-87
tr|B9M4M3|B9M4M3_GEOSF Tax_Id=316067 SubName: Full=Exodeoxyribon...   289   1e-75
tr|Q74CY7|Q74CY7_GEOSL Tax_Id=35554 (recB)SubName: Full=Exodeoxy...   268   2e-69
tr|A1BGA3|A1BGA3_CHLPD Tax_Id=290317 SubName: Full=DNA helicase/...   251   4e-64
tr|Q8KDI1|Q8KDI1_CHLTE Tax_Id=1097 (recB)SubName: Full=Exodeoxyr...   245   3e-62
tr|A4SEL9|A4SEL9_PROVI Tax_Id=290318 SubName: Full=Exodeoxyribon...   245   3e-62
tr|B3ECZ4|B3ECZ4_CHLL2 Tax_Id=290315 SubName: Full=Exodeoxyribon...   244   4e-62
tr|B2JKV3|B2JKV3_BURP8 Tax_Id=391038 SubName: Full=Exodeoxyribon...   243   8e-62
tr|D0YCI3|D0YCI3_KLEVA Tax_Id=640131 SubName: Full=Exodeoxyribon...   243   1e-61
tr|B5XUQ9|B5XUQ9_KLEP3 Tax_Id=507522 (recB)SubName: Full=Exodeox...   241   4e-61
tr|C8SXN0|C8SXN0_KLEPR Tax_Id=667127 (recB)SubName: Full=Exodeox...   241   5e-61
tr|A6TDF6|A6TDF6_KLEP7 Tax_Id=272620 (recB)SubName: Full=DNA hel...   239   1e-60
tr|C4WYP5|C4WYP5_KLEPN Tax_Id=484021 (recB)SubName: Full=Exonucl...   239   1e-60
tr|C0N789|C0N789_9GAMM Tax_Id=637616 (recB)SubName: Full=Exodeox...   239   1e-60
tr|Q0YQY1|Q0YQY1_9CHLB Tax_Id=377431 SubName: Full=Exodeoxyribon...   238   5e-60

>tr|B2HSF6|B2HSF6_MYCMM Tax_Id=216594 (recB)SubName:
            Full=Exodeoxyribonuclease V (Beta chain),
            RecB;[Mycobacterium marinum]
          Length = 1110

 Score = 1928 bits (4995), Expect = 0.0
 Identities = 986/1110 (88%), Positives = 986/1110 (88%)

Query: 1    MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60
            MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ
Sbjct: 1    MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60

Query: 61   ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120
            ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG
Sbjct: 61   ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120

Query: 121  FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
            FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP
Sbjct: 121  FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180

Query: 181  LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
            LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRK          
Sbjct: 181  LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKRRRGILGYDD 240

Query: 241  XXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                               MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK
Sbjct: 241  LLLRLADALASEDSAARARMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300

Query: 301  QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
            QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV
Sbjct: 301  QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360

Query: 361  KAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG 420
            KAHHQGHRLAGAPHND                IQNLPIDILRDHIGRDLASDIGALLASG
Sbjct: 361  KAHHQGHRLAGAPHNDALRLRVVRRATLGRRGIQNLPIDILRDHIGRDLASDIGALLASG 420

Query: 421  ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXX 480
            ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSS            
Sbjct: 421  ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSEAADDWLALLEA 480

Query: 481  FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540
            FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA
Sbjct: 481  FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540

Query: 541  QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
            QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER
Sbjct: 541  QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKDS 660
            NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKDS
Sbjct: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKDS 660

Query: 661  PDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXDS 720
            PDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPN             DS
Sbjct: 661  PDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNGGLSRLLRGRRPGDS 720

Query: 721  VVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRGI 780
            VVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESV             SELATRRFDRGI
Sbjct: 721  VVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVIAAAPAIAGRPAPSELATRRFDRGI 780

Query: 781  DIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSGA 840
            DIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSGA
Sbjct: 781  DIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSGA 840

Query: 841  KFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWXXXXXXXXXXXXXXXMHDXXXXXXX 900
            KFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWW               MHD       
Sbjct: 841  KFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWPVQVPAAQLAAALVPMHDTPLGPLA 900

Query: 901  XXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASDPLAPY 960
                 RQIGLPDRLREMDFEFPL              LRLADVGALLRAHLDASDPLAPY
Sbjct: 901  GGLTLRQIGLPDRLREMDFEFPLAGGDEADAGGHAPDLRLADVGALLRAHLDASDPLAPY 960

Query: 961  ADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYHR 1020
            ADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYHR
Sbjct: 961  ADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYHR 1020

Query: 1021 PRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPMLD 1080
            PRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPMLD
Sbjct: 1021 PRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPMLD 1080

Query: 1081 GHPAGVFSWSPPAALVTALSDLLDAGRAVA 1110
            GHPAGVFSWSPPAALVTALSDLLDAGRAVA
Sbjct: 1081 GHPAGVFSWSPPAALVTALSDLLDAGRAVA 1110


>tr|A0PLZ3|A0PLZ3_MYCUA Tax_Id=362242 (recB)SubName:
            Full=Exodeoxyribonuclease V (Beta chain),
            RecB;[Mycobacterium ulcerans]
          Length = 1110

 Score = 1913 bits (4955), Expect = 0.0
 Identities = 979/1110 (88%), Positives = 980/1110 (88%)

Query: 1    MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60
            MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ
Sbjct: 1    MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60

Query: 61   ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120
            ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG
Sbjct: 61   ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120

Query: 121  FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
            FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP
Sbjct: 121  FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180

Query: 181  LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
            LTYRDALRIARAVVANPSTQLRPLDAPPGSRAA CVGFAHHVLE LETRK          
Sbjct: 181  LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAACVGFAHHVLEGLETRKRRRGILGYDD 240

Query: 241  XXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                               MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK
Sbjct: 241  LLLRLADALASEDSAARARMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300

Query: 301  QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
            QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV
Sbjct: 301  QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360

Query: 361  KAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG 420
            KAHHQGHRLAGAPHND                IQNLPIDILRDHIGRDLASDIGALLASG
Sbjct: 361  KAHHQGHRLAGAPHNDALRLRVVRRATLGRRGIQNLPIDILRDHIGRDLASDIGALLASG 420

Query: 421  ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXX 480
            ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSS            
Sbjct: 421  ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSEAADDWLALLEA 480

Query: 481  FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540
            FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA
Sbjct: 481  FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540

Query: 541  QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
            QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER
Sbjct: 541  QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKDS 660
            NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHD GTRCLHIGGKDS
Sbjct: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDRGTRCLHIGGKDS 660

Query: 661  PDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXDS 720
            PDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPN             DS
Sbjct: 661  PDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNGGLSRLLRGRRPGDS 720

Query: 721  VVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRGI 780
            VVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESV             SELATRRFDR I
Sbjct: 721  VVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVIAAAPAIAGQPAPSELATRRFDRDI 780

Query: 781  DIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSGA 840
            DIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSGA
Sbjct: 781  DIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSGA 840

Query: 841  KFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWXXXXXXXXXXXXXXXMHDXXXXXXX 900
            KFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWW               MHD       
Sbjct: 841  KFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWPVQVPAAQLAAALVPMHDTPLGPLA 900

Query: 901  XXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASDPLAPY 960
                 RQIGLPDRLREMDFEFPL              LRLADVGALLRAHLDASDPLAPY
Sbjct: 901  GGLTLRQIGLPDRLREMDFEFPLAGGDEADAGGHAPDLRLADVGALLRAHLDASDPLAPY 960

Query: 961  ADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYHR 1020
             DRLSGDALGGQ+LRGYLSGSVD VLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYHR
Sbjct: 961  DDRLSGDALGGQTLRGYLSGSVDVVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYHR 1020

Query: 1021 PRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPMLD 1080
            PRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPMLD
Sbjct: 1021 PRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPMLD 1080

Query: 1081 GHPAGVFSWSPPAALVTALSDLLDAGRAVA 1110
            GHPAGVFSWSPPAALVTALSDLLDAGRAVA
Sbjct: 1081 GHPAGVFSWSPPAALVTALSDLLDAGRAVA 1110


>tr|A0QL86|A0QL86_MYCA1 Tax_Id=243243 (recB)SubName:
            Full=Exodeoxyribonuclease V, beta subunit;
            EC=3.1.11.5;[Mycobacterium avium]
          Length = 1100

 Score = 1401 bits (3626), Expect = 0.0
 Identities = 728/1106 (65%), Positives = 825/1106 (74%), Gaps = 12/1106 (1%)

Query: 1    MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60
            M  FDLLG LPA  STTVLEASAGTGKTFALA LVTRY+A+G A LD+MLLITFGRAASQ
Sbjct: 1    MERFDLLGALPAARSTTVLEASAGTGKTFALAGLVTRYLADGAATLDQMLLITFGRAASQ 60

Query: 61   ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120
            ELRERVRCQ+VDAV  F D          AGDN+L+A+LLDGT     AR+QRLRD LAG
Sbjct: 61   ELRERVRCQIVDAVAAFADPSR-------AGDNELVAYLLDGTEDRLAARRQRLRDGLAG 113

Query: 121  FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
            FDAATIATTHQFCQLVL+SLGVAGDT AGVTL++ LDELV EIVDDLYL HFG+D DDP 
Sbjct: 114  FDAATIATTHQFCQLVLRSLGVAGDTAAGVTLLDSLDELVAEIVDDLYLAHFGQDHDDPV 173

Query: 181  LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
            L YR+ALR+AR VV NPS QLRPL   PGSRAA+ + FA+ VL EL+TRK          
Sbjct: 174  LHYREALRLARDVVNNPSAQLRPLHPEPGSRAAVSLRFANDVLAELDTRKRRLGVLGYDD 233

Query: 241  XXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                               M QRWP+VMVDEFQDTD VQWQVID AFSGR TLILIGDPK
Sbjct: 234  LLTRLADALATEHSPARLRMHQRWPIVMVDEFQDTDPVQWQVIDRAFSGRSTLILIGDPK 293

Query: 301  QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
            QAIYAFRGGDIVTYL AA+TAG K+TL TNWRSDSAL+ RLQVVLRGA+LGDPAIVV DV
Sbjct: 294  QAIYAFRGGDIVTYLRAAETAGQKKTLDTNWRSDSALLQRLQVVLRGAQLGDPAIVVNDV 353

Query: 361  KAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG 420
             AHH+GHRL+GAP ND                I NLPID LR HIG DLA+DI ALLA+G
Sbjct: 354  AAHHRGHRLSGAPRNDPFRLRVVSRNTLGRRGIANLPIDELRQHIGADLAADIRALLAAG 413

Query: 421  ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXX 480
            ATF G+ ++A DIAVIVE+H+DA+AC  AL DAG+ AVYTG++DVF+S            
Sbjct: 414  ATFDGKPVRAGDIAVIVERHRDAQACFTALCDAGVPAVYTGNSDVFTSQAAEDWLCLLEA 473

Query: 481  FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540
            FDQPHRPG+VRAAAATMFFG+TA  LA GGDALTDR+A+TLREWA +ARERGVAAIFEAA
Sbjct: 474  FDQPHRPGVVRAAAATMFFGETAETLAAGGDALTDRIAQTLREWAGHARERGVAAIFEAA 533

Query: 541  QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
            QL GM +RVL WQ G RHMTDLAH+TQLL +V+H E + LPALRDWLR QR++R GA ER
Sbjct: 534  QLLGMGNRVLGWQGGARHMTDLAHLTQLLGEVAHCEHHNLPALRDWLRRQRDERSGAPER 593

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHD-GGTRCLHIGGKD 659
            NRR+DSDAAAVQIMTV+VSKGLQYP+VYLPFAF+RN  + ++VLFHD  GTRCLH+GGKD
Sbjct: 594  NRRLDSDAAAVQIMTVFVSKGLQYPIVYLPFAFHRNTTDSDVVLFHDEDGTRCLHVGGKD 653

Query: 660  SPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXD 719
            SPDF TVERLG KE A+DDSRLTYVA+TRAQ+QVVAWWSPAY EPN             +
Sbjct: 654  SPDFKTVERLGRKEDASDDSRLTYVALTRAQAQVVAWWSPAYHEPNGGLSRLLRGRRPGE 713

Query: 720  SVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRG 779
             VVPDR  PAKI+DEDA  R ++W+AAGGP +EE+V             + L  R F RG
Sbjct: 714  PVVPDRCEPAKISDEDALARLREWEAAGGPVIEEAVPAPAPPLPGVPVPARLENRHFHRG 773

Query: 780  IDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSG 839
            ID  WRRTSYSGLIR A+ +GV SEPE    DDEV ++ L      G +  SPMADLP+G
Sbjct: 774  IDTGWRRTSYSGLIRQAQPSGVGSEPEAAGLDDEVGDILLAPATSVG-DVASPMADLPAG 832

Query: 840  AKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWXXXXXXXXXXXXXXXMHDXXXXXX 899
            A FG+LVHAVL+T+DPFA DLAAEL ++IR  S WW               MHD      
Sbjct: 833  ATFGTLVHAVLQTADPFAPDLAAELTARIREHSVWWPVAATPEDMAAAMVPMHDTPLGPL 892

Query: 900  XXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASDPLAP 959
                  R+IGL DRL E+DFE PL              +RLAD+  LLRAHL A D LA 
Sbjct: 893  AGGLTLRRIGLSDRLCELDFELPL---AGGDRRSAPPEVRLADLAPLLRAHLPADDVLAC 949

Query: 960  YADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYH 1019
            YADRL+  +LG +SLRGYL+GS+DAVLRIPDG G RYLVVDYKTN LGD   PLTAADY 
Sbjct: 950  YADRLTDRSLGAESLRGYLTGSIDAVLRIPDGAGHRYLVVDYKTNRLGDAQHPLTAADYD 1009

Query: 1020 RPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPML 1079
            RPR++EAMLHSDYPLQALLY+ VLHRFLRWR  GYDP RHLGG+LYLFVRGMCGPDTP+ 
Sbjct: 1010 RPRMVEAMLHSDYPLQALLYSAVLHRFLRWRLAGYDPDRHLGGILYLFVRGMCGPDTPVR 1069

Query: 1080 DGHPAGVFSWSPPAALVTALSDLLDA 1105
            DGHP+GVF W PP++L+ ALSDLLDA
Sbjct: 1070 DGHPSGVFDWRPPSSLIAALSDLLDA 1095


>tr|A3PUY8|A3PUY8_MYCSJ Tax_Id=164757 SubName:
            Full=Exodeoxyribonuclease V, beta subunit;[Mycobacterium
            sp.]
          Length = 1115

 Score = 1369 bits (3543), Expect = 0.0
 Identities = 707/1111 (63%), Positives = 803/1111 (72%), Gaps = 14/1111 (1%)

Query: 4    FDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELR 63
            FDLLGPLPA  +TTVLEASAGTGKTFALA LVTRY+AEG A LD+MLL+TFGRAASQELR
Sbjct: 15   FDLLGPLPAPLTTTVLEASAGTGKTFALAGLVTRYIAEGAATLDQMLLVTFGRAASQELR 74

Query: 64   ERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFDA 123
            ERVRCQM+DA+  F       +D    GDNQL+AHL+D    ER  R+QRL+DALAGFDA
Sbjct: 75   ERVRCQMLDALVAF-------EDPSTVGDNQLVAHLIDAPDDERHLRKQRLKDALAGFDA 127

Query: 124  ATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPPLTY 183
            ATIATTHQFCQLVLKSLGVAGDTD GV LVE LD+L  EIVDDLYL HFG+ RDDP +T 
Sbjct: 128  ATIATTHQFCQLVLKSLGVAGDTDTGVQLVESLDDLTAEIVDDLYLAHFGQQRDDPVMTR 187

Query: 184  RDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXXXXX 243
              AL +A  VV N  T+LRP + PPG+ +A+ V FA  V  ELE RK             
Sbjct: 188  GQALELAHEVVGNAGTELRPQNPPPGTESAVRVEFAKAVCAELERRKRRLGILHYDDLLS 247

Query: 244  XXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPKQAI 303
                            M +RW +VMVDEFQDTD VQWQV+D AF+GR TLILIGDPKQAI
Sbjct: 248  RLANALTGEDSPARTRMHRRWSIVMVDEFQDTDPVQWQVLDRAFTGRSTLILIGDPKQAI 307

Query: 304  YAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDVKAH 363
            YAFRGGDI TYLHAA TAG ++TL TNWRSD  LVDRLQVVLR AELGDP IVVR V+A 
Sbjct: 308  YAFRGGDIATYLHAASTAGHRQTLGTNWRSDGDLVDRLQVVLRDAELGDPEIVVRPVEAR 367

Query: 364  HQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASGATF 423
            H+GHRLAGAPHND                 + + ID LR HI  DLA+DIG LLASGATF
Sbjct: 368  HKGHRLAGAPHNDPFRLRIVSRDTFGIRGDRTIAIDRLRAHISADLAADIGRLLASGATF 427

Query: 424  AGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXXFDQ 483
              + ++A DIAVIVEKHKDARAC  AL+ AGI AVYTGD+DVF+S            FDQ
Sbjct: 428  CDKKIEAKDIAVIVEKHKDARACFDALSVAGIPAVYTGDSDVFNSPAGDDWLCLLEAFDQ 487

Query: 484  PHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAAQLG 543
            PHRPG+VRAAA TMFFG+TA +LA  GD LTD +A+ LREWAD+ARERGVAAIFEAA + 
Sbjct: 488  PHRPGLVRAAATTMFFGRTAEELAARGDRLTDEIADRLREWADHARERGVAAIFEAANMT 547

Query: 544  GMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATERNRR 603
            GM  RVLSW++G+RHMTDLAH+TQ+L + +HRE + LPALRDWLR QRE+R GATERNRR
Sbjct: 548  GMGRRVLSWRDGERHMTDLAHLTQVLHETAHREHFNLPALRDWLRTQREERSGATERNRR 607

Query: 604  IDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKDSPDF 663
            +D+DAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQ R+ VLFHD  TRCLHIGG DSPD 
Sbjct: 608  LDNDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQTRDCVLFHDDRTRCLHIGGDDSPDH 667

Query: 664  GTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXDSVVP 723
              VERLG KEAA DD RLTYVA+TRAQSQVVAWW+P++DEPN             ++ VP
Sbjct: 668  AQVERLGRKEAAGDDVRLTYVALTRAQSQVVAWWAPSWDEPNGGLSRLLRGRAPGETTVP 727

Query: 724  DRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRGIDIR 783
            DR  P K+ D DA    + W   GGP +E+S              ++L  R F RGID  
Sbjct: 728  DRCDPPKVDDADARTALRAWADLGGPVLEDSEIAAPAAPEPREHPTDLDVRHFHRGIDTA 787

Query: 784  WRRTSYSGLIRMAEAT----GVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSG 839
            WRRTSYSGL+R AE +    GV+SEPEV E DDE AEVP++E        PSPMA+LP+G
Sbjct: 788  WRRTSYSGLLRAAEGSPAVAGVTSEPEVGELDDEAAEVPVSESHTDVDPVPSPMAELPTG 847

Query: 840  AKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWXXXXXXXXXXXXXXXMHDXXXXXX 899
            AKFGSLVHAVLE +DPFA DL AELE +IR    WW               MHD      
Sbjct: 848  AKFGSLVHAVLEHADPFAADLKAELEHRIREHMVWWPVDVEAEALADALLPMHDTPLGPL 907

Query: 900  XXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASDPLAP 959
                  RQIGL DRLRE+DFEFPL              + LADVG LL AHL A DP+AP
Sbjct: 908  VPNVTLRQIGLRDRLRELDFEFPL---AGGDVRGGAPAITLADVGHLLGAHLSADDPMAP 964

Query: 960  YADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYH 1019
            Y DRL+  ALGGQSL+GYL+GS+D VLR+ D  G RY+V D+KTNWLG+P++PLTAADY 
Sbjct: 965  YVDRLTDRALGGQSLKGYLTGSIDVVLRVRDTTGVRYVVADWKTNWLGEPEKPLTAADYS 1024

Query: 1020 RPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPML 1079
            R R+ EAMLHSDYPLQALLY VVLHRFLRWRQPGYDPA+HLGGVLYLFVRGMCG  TP++
Sbjct: 1025 RTRMAEAMLHSDYPLQALLYCVVLHRFLRWRQPGYDPAKHLGGVLYLFVRGMCGASTPVI 1084

Query: 1080 DGHPAGVFSWSPPAALVTALSDLLDAGRAVA 1110
            DG P GVFSW PPA+L+ ALSDLLDAG A A
Sbjct: 1085 DGDPTGVFSWRPPASLIVALSDLLDAGAAAA 1115


>tr|Q1BDL8|Q1BDL8_MYCSS Tax_Id=164756 SubName: Full=DNA
            helicase/exodeoxyribonuclease V, beta subunit;
            EC=3.1.11.5;[Mycobacterium sp.]
          Length = 1115

 Score = 1354 bits (3504), Expect = 0.0
 Identities = 703/1111 (63%), Positives = 797/1111 (71%), Gaps = 14/1111 (1%)

Query: 4    FDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELR 63
            FDLLG LPA  +TTVLEASAGTGKTFALA LVTRY+AEG A LD+MLL+TFGRAASQELR
Sbjct: 15   FDLLGRLPAPLTTTVLEASAGTGKTFALAGLVTRYIAEGAATLDQMLLVTFGRAASQELR 74

Query: 64   ERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFDA 123
            ERVRCQM+DA+  F       +D    GDNQL+ HL+D    ER  R+QRL+DALAGFDA
Sbjct: 75   ERVRCQMLDALVAF-------EDPSTVGDNQLVEHLIDAPDDERHLRKQRLKDALAGFDA 127

Query: 124  ATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPPLTY 183
            ATIATTHQFCQLVLKSLGVAGDTD GV LVE LD+L  EIVDDLYL HFG+ RDDP +T 
Sbjct: 128  ATIATTHQFCQLVLKSLGVAGDTDTGVQLVESLDDLTAEIVDDLYLAHFGQQRDDPVMTR 187

Query: 184  RDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXXXXX 243
              AL +AR VV N  T+LRP + PP + AA  V FA  V  ELE RK             
Sbjct: 188  GQALELAREVVGNAGTELRPQNPPPETEAAARVEFAKAVCAELERRKRRLGILHYDDLLS 247

Query: 244  XXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPKQAI 303
                            M +RW +VMVDEFQDTD VQWQV+D AF+GR TLILIGDPKQAI
Sbjct: 248  RLANALTGEDSPARTRMHRRWSIVMVDEFQDTDPVQWQVLDRAFTGRSTLILIGDPKQAI 307

Query: 304  YAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDVKAH 363
            YAFRGGDI TYLHAA TAG ++TL TNWRSD  LVDRLQVVLR AELGDP IVVR V+A 
Sbjct: 308  YAFRGGDIATYLHAASTAGHRQTLGTNWRSDGDLVDRLQVVLRDAELGDPEIVVRPVEAR 367

Query: 364  HQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASGATF 423
            H+GHRLAGAPHND                 + +PID LR HI  DLA+DIG LLASGATF
Sbjct: 368  HKGHRLAGAPHNDPFRLRIVSRDTFGIRGDRTIPIDRLRPHISADLAADIGRLLASGATF 427

Query: 424  AGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXXFDQ 483
              + ++A DIAVIVEKHKDARAC  AL+ AGI AVYTGD+DVF+S            FDQ
Sbjct: 428  CDKKIEAKDIAVIVEKHKDARACFDALSVAGIPAVYTGDSDVFNSPAGDDWLCLLEAFDQ 487

Query: 484  PHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAAQLG 543
            PHR G+VRAAA TMFFG+TA +LA  GD LTD +A+ LREWAD+ARERGVAAIFEAA + 
Sbjct: 488  PHRSGLVRAAATTMFFGRTAEELAARGDRLTDEIADRLREWADHARERGVAAIFEAANMT 547

Query: 544  GMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATERNRR 603
            GM  RVLSW++G+RHMTDLAH+TQ+L + +HRE + LPALRDWLR QRE+R GATERNRR
Sbjct: 548  GMGRRVLSWRDGERHMTDLAHLTQVLHETAHREHFNLPALRDWLRTQREERSGATERNRR 607

Query: 604  IDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKDSPDF 663
            +D+DAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQ R+ VLFHD  TRCLHIGG DSPD 
Sbjct: 608  LDNDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQTRDCVLFHDDRTRCLHIGGDDSPDH 667

Query: 664  GTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXDSVVP 723
              VERLG KEAA DD RLTYVA+TRAQSQVVAWW+P++DEPN             ++ VP
Sbjct: 668  AQVERLGRKEAAGDDIRLTYVALTRAQSQVVAWWAPSWDEPNGGLSRLLRGRAPGETTVP 727

Query: 724  DRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRGIDIR 783
            DR  P K+ D DA    + W   GGP +E+S              ++L  R F RGID  
Sbjct: 728  DRCDPPKLDDADARTALRAWADLGGPVLEDSEIAAPAAPELREHPTDLDVRHFHRGIDTA 787

Query: 784  WRRTSYSGLIRMAEAT----GVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSG 839
            WRRTSYSGL+R AE +    GV+SEPEV E DDE AEVP++E        PSPMA+LP+G
Sbjct: 788  WRRTSYSGLLRAAEGSPAVAGVTSEPEVGELDDEAAEVPVSESHTDVDPVPSPMAELPTG 847

Query: 840  AKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWXXXXXXXXXXXXXXXMHDXXXXXX 899
            AKFGSLVHAVLE +DPFA DL AELE +IR    WW               MHD      
Sbjct: 848  AKFGSLVHAVLEHADPFAADLKAELEHRIREHMVWWPVDVEAEALADALLPMHDTPLGPL 907

Query: 900  XXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASDPLAP 959
                  RQIG  DRLRE+DFEFPL              + LADVG LL AHL A DP+ P
Sbjct: 908  APNVTLRQIGPRDRLRELDFEFPL---AGGDVRGGAPAITLADVGRLLGAHLPADDPMTP 964

Query: 960  YADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYH 1019
            Y DRL+  ALGGQSL+GYL+GS+D VLR+ D  G RY+V D+KTNWLG+ ++PLTAADY 
Sbjct: 965  YVDRLTDRALGGQSLKGYLTGSIDVVLRVRDTTGVRYVVADWKTNWLGEREKPLTAADYS 1024

Query: 1020 RPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPML 1079
            R R+ EAMLHSDYPLQALLY VVLHRFLRWRQPGYDPA+HLGGVLYLFVRGMCG  TP++
Sbjct: 1025 RTRMAEAMLHSDYPLQALLYCVVLHRFLRWRQPGYDPAKHLGGVLYLFVRGMCGASTPVV 1084

Query: 1080 DGHPAGVFSWSPPAALVTALSDLLDAGRAVA 1110
            DG P GVFSW PPA+L+ ALSDLLDAG A A
Sbjct: 1085 DGDPTGVFSWRPPASLIVALSDLLDAGAAAA 1115


>tr|A1UBC3|A1UBC3_MYCSK Tax_Id=189918 SubName: Full=DNA
            helicase/exodeoxyribonuclease V, beta subunit;
            EC=3.1.11.5;[Mycobacterium sp.]
          Length = 1115

 Score = 1354 bits (3504), Expect = 0.0
 Identities = 703/1111 (63%), Positives = 797/1111 (71%), Gaps = 14/1111 (1%)

Query: 4    FDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELR 63
            FDLLG LPA  +TTVLEASAGTGKTFALA LVTRY+AEG A LD+MLL+TFGRAASQELR
Sbjct: 15   FDLLGRLPAPLTTTVLEASAGTGKTFALAGLVTRYIAEGAATLDQMLLVTFGRAASQELR 74

Query: 64   ERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFDA 123
            ERVRCQM+DA+  F       +D    GDNQL+ HL+D    ER  R+QRL+DALAGFDA
Sbjct: 75   ERVRCQMLDALVAF-------EDPSTVGDNQLVEHLIDAPDDERHLRKQRLKDALAGFDA 127

Query: 124  ATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPPLTY 183
            ATIATTHQFCQLVLKSLGVAGDTD GV LVE LD+L  EIVDDLYL HFG+ RDDP +T 
Sbjct: 128  ATIATTHQFCQLVLKSLGVAGDTDTGVQLVESLDDLTAEIVDDLYLAHFGQQRDDPVMTR 187

Query: 184  RDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXXXXX 243
              AL +AR VV N  T+LRP + PP + AA  V FA  V  ELE RK             
Sbjct: 188  GQALELAREVVGNAGTELRPQNPPPETEAAARVEFAKAVCAELERRKRRLGILHYDDLLS 247

Query: 244  XXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPKQAI 303
                            M +RW +VMVDEFQDTD VQWQV+D AF+GR TLILIGDPKQAI
Sbjct: 248  RLANALTGEDSPARTRMHRRWSIVMVDEFQDTDPVQWQVLDRAFTGRSTLILIGDPKQAI 307

Query: 304  YAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDVKAH 363
            YAFRGGDI TYLHAA TAG ++TL TNWRSD  LVDRLQVVLR AELGDP IVVR V+A 
Sbjct: 308  YAFRGGDIATYLHAASTAGHRQTLGTNWRSDGDLVDRLQVVLRDAELGDPEIVVRPVEAR 367

Query: 364  HQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASGATF 423
            H+GHRLAGAPHND                 + +PID LR HI  DLA+DIG LLASGATF
Sbjct: 368  HKGHRLAGAPHNDPFRLRIVSRDTFGIRGDRTIPIDRLRPHISADLAADIGRLLASGATF 427

Query: 424  AGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXXFDQ 483
              + ++A DIAVIVEKHKDARAC  AL+ AGI AVYTGD+DVF+S            FDQ
Sbjct: 428  CDKKIEAKDIAVIVEKHKDARACFDALSVAGIPAVYTGDSDVFNSPAGDDWLCLLEAFDQ 487

Query: 484  PHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAAQLG 543
            PHR G+VRAAA TMFFG+TA +LA  GD LTD +A+ LREWAD+ARERGVAAIFEAA + 
Sbjct: 488  PHRSGLVRAAATTMFFGRTAEELAARGDRLTDEIADRLREWADHARERGVAAIFEAANMT 547

Query: 544  GMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATERNRR 603
            GM  RVLSW++G+RHMTDLAH+TQ+L + +HRE + LPALRDWLR QRE+R GATERNRR
Sbjct: 548  GMGRRVLSWRDGERHMTDLAHLTQVLHETAHREHFNLPALRDWLRTQREERSGATERNRR 607

Query: 604  IDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKDSPDF 663
            +D+DAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQ R+ VLFHD  TRCLHIGG DSPD 
Sbjct: 608  LDNDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQTRDCVLFHDDRTRCLHIGGDDSPDH 667

Query: 664  GTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXDSVVP 723
              VERLG KEAA DD RLTYVA+TRAQSQVVAWW+P++DEPN             ++ VP
Sbjct: 668  AQVERLGRKEAAGDDIRLTYVALTRAQSQVVAWWAPSWDEPNGGLSRLLRGRAPGETTVP 727

Query: 724  DRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRGIDIR 783
            DR  P K+ D DA    + W   GGP +E+S              ++L  R F RGID  
Sbjct: 728  DRCDPPKLDDADARTALRAWADLGGPVLEDSEIAAPAAPELREHPTDLDVRHFHRGIDTA 787

Query: 784  WRRTSYSGLIRMAEAT----GVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSG 839
            WRRTSYSGL+R AE +    GV+SEPEV E DDE AEVP++E        PSPMA+LP+G
Sbjct: 788  WRRTSYSGLLRAAEGSPAVAGVTSEPEVGELDDEAAEVPVSESHTDVDPVPSPMAELPTG 847

Query: 840  AKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWXXXXXXXXXXXXXXXMHDXXXXXX 899
            AKFGSLVHAVLE +DPFA DL AELE +IR    WW               MHD      
Sbjct: 848  AKFGSLVHAVLEHADPFAADLKAELEHRIREHMVWWPVDVEAEALADALLPMHDTPLGPL 907

Query: 900  XXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASDPLAP 959
                  RQIG  DRLRE+DFEFPL              + LADVG LL AHL A DP+ P
Sbjct: 908  APNVTLRQIGPRDRLRELDFEFPL---AGGDVRGGAPAITLADVGRLLGAHLPADDPMTP 964

Query: 960  YADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYH 1019
            Y DRL+  ALGGQSL+GYL+GS+D VLR+ D  G RY+V D+KTNWLG+ ++PLTAADY 
Sbjct: 965  YVDRLTDRALGGQSLKGYLTGSIDVVLRVRDTTGVRYVVADWKTNWLGEREKPLTAADYS 1024

Query: 1020 RPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPML 1079
            R R+ EAMLHSDYPLQALLY VVLHRFLRWRQPGYDPA+HLGGVLYLFVRGMCG  TP++
Sbjct: 1025 RTRMAEAMLHSDYPLQALLYCVVLHRFLRWRQPGYDPAKHLGGVLYLFVRGMCGASTPVV 1084

Query: 1080 DGHPAGVFSWSPPAALVTALSDLLDAGRAVA 1110
            DG P GVFSW PPA+L+ ALSDLLDAG A A
Sbjct: 1085 DGDPTGVFSWRPPASLIVALSDLLDAGAAAA 1115


>tr|A1T4E4|A1T4E4_MYCVP Tax_Id=350058 SubName: Full=DNA
            helicase/exodeoxyribonuclease V, beta subunit;
            EC=3.1.11.5;[Mycobacterium vanbaalenii]
          Length = 1097

 Score = 1347 bits (3487), Expect = 0.0
 Identities = 705/1110 (63%), Positives = 792/1110 (71%), Gaps = 16/1110 (1%)

Query: 1    MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60
            M PFDLLGPLPA  +TTVLEASAGTGKTFALA LVTRYVAEG A LD+MLLITFGRAASQ
Sbjct: 1    MEPFDLLGPLPAPRTTTVLEASAGTGKTFALAGLVTRYVAEGVATLDQMLLITFGRAASQ 60

Query: 61   ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120
            ELRERVR Q++DA+R F       DD   A DN+++AHLL G+  E   R+QRLRDALAG
Sbjct: 61   ELRERVRAQILDALRAF-------DDPSHAADNEIVAHLLTGSHGELTERRQRLRDALAG 113

Query: 121  FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
            FDAATIATTHQFCQLVL+SLGVAGDTD+GV LVE LD+LVTEIVDDLYL HFG+D D+P 
Sbjct: 114  FDAATIATTHQFCQLVLRSLGVAGDTDSGVELVESLDDLVTEIVDDLYLAHFGQDHDEPL 173

Query: 181  LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
            LTY DAL +AR VV N  T+LRP D PPGS   + V FA  V  ELETRK          
Sbjct: 174  LTYADALSLAREVVGNAHTELRPTDPPPGSDPFVRVQFARAVCAELETRKRRLGILHYDD 233

Query: 241  XXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                               MQ RW +VMVDEFQDTD VQWQVID AFSG  T+ILIGDPK
Sbjct: 234  LLSRLAKALEPQDSPARMRMQHRWSIVMVDEFQDTDPVQWQVIDCAFSGHATVILIGDPK 293

Query: 301  QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
            QAIYAFRGGDIVTYLHA  TA  ++TL TN+RSD  LVD LQ V+R A+LGDP IV   V
Sbjct: 294  QAIYAFRGGDIVTYLHAVSTADRQKTLGTNYRSDGPLVDSLQAVMRDAQLGDPRIVAHRV 353

Query: 361  KAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG 420
            +AHH+ HRLAGAP N                  + + ID LR HI +D+A+DI ALLAS 
Sbjct: 354  EAHHRDHRLAGAPRNAPFRLRVVTRDQFGTRPDRVVAIDQLRRHIPQDMAADIAALLASD 413

Query: 421  ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXX 480
            ATF  R +Q  D+AVIVE H+D  AC  ALT AGI AVYTGD+DVF+S            
Sbjct: 414  ATFCDRPVQPGDVAVIVESHRDGHACFDALTAAGIPAVYTGDSDVFTSPAADDWMCLLEA 473

Query: 481  FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540
            FDQPHR G+VRAAA TMFFG+TA  LA  GD LTDRVAETLR+WAD+AR+RGVAA+FEAA
Sbjct: 474  FDQPHRSGLVRAAATTMFFGETAESLAAEGDTLTDRVAETLRQWADFARDRGVAAVFEAA 533

Query: 541  QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
            QLGGM +RVLSW +G+RHMTDLAH+TQ+L   +HRE ++LPALRDWLRGQR++R GA ER
Sbjct: 534  QLGGMGERVLSWVDGERHMTDLAHLTQVLHGTAHREHFSLPALRDWLRGQRDERSGAPER 593

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKDS 660
            NRR+DSDAAAVQIMTVWVSKGLQ+PVVYLPFAFNRNIQ R++V FHDG  RCLHIGG+ S
Sbjct: 594  NRRLDSDAAAVQIMTVWVSKGLQFPVVYLPFAFNRNIQTRDVVTFHDGDIRCLHIGGERS 653

Query: 661  PDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXDS 720
            PD    ++ G +EAA DD RLTYVAMTRAQSQVVAWW+P+ DEPN             D 
Sbjct: 654  PDHAAAQQQGRREAAGDDVRLTYVAMTRAQSQVVAWWAPSNDEPNGGLSRLLRGRAPGDP 713

Query: 721  VVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRGI 780
            VVPDR  P +I D DA  + + W  AGGP +EESV              +L  R F R I
Sbjct: 714  VVPDRCDPPRIDDPDAMAQLRAWSDAGGPVLEESVIAASVTVELPSPAEDLDVRHFHRRI 773

Query: 781  DIRWRRTSYSGLIRMAEA--TGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPS 838
            D  WRRTSYSGLIR AE+  TGV SEPEV E DDE  EVP+      G + PSPMADLP 
Sbjct: 774  DTSWRRTSYSGLIRAAESEQTGVGSEPEVVELDDEAGEVPVPGAGGGGDQMPSPMADLPM 833

Query: 839  GAKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWXXXXXXXXXXXXXXXMHDXXXXX 898
            GAKFG+LVHAVLET+DPFA DLAAELES +R  S WW               +HD     
Sbjct: 834  GAKFGTLVHAVLETADPFATDLAAELESHVRRHSLWWPVDVPAADLAAALVPLHDTPLGP 893

Query: 899  XXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASDPLA 958
                   R IGL DRLREM+FEFPL              + LADVG LL AHL A DPLA
Sbjct: 894  LAPGVTLRDIGLRDRLREMEFEFPL---AGGDRRVEVPDISLADVGRLLAAHLPADDPLA 950

Query: 959  PYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADY 1018
            PYA+RL+G  L  QSL+GYL+GSVDAVLR+    G RYLVVDYKTNWLGDP RPLTAADY
Sbjct: 951  PYAERLTGGTLAAQSLKGYLNGSVDAVLRV----GDRYLVVDYKTNWLGDPARPLTAADY 1006

Query: 1019 HRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPM 1078
             + RL E MLHSDYPLQALLY VVLHRFLRWR PGY    H+ GVLYLFVRGMCG DTP+
Sbjct: 1007 GKARLTEVMLHSDYPLQALLYCVVLHRFLRWRAPGYRAESHIAGVLYLFVRGMCGADTPV 1066

Query: 1079 LDGHPAGVFSWSPPAALVTALSDLLDAGRA 1108
            +DGHPAGVFSW PPAAL+ ALSDLLDAG A
Sbjct: 1067 VDGHPAGVFSWQPPAALIEALSDLLDAGVA 1096


>tr|A4T1L3|A4T1L3_MYCGI Tax_Id=350054 SubName: Full=DNA
            helicase/exodeoxyribonuclease V, beta subunit;
            EC=3.1.11.5;[Mycobacterium gilvum]
          Length = 1109

 Score = 1320 bits (3415), Expect = 0.0
 Identities = 707/1123 (62%), Positives = 793/1123 (70%), Gaps = 27/1123 (2%)

Query: 1    MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60
            M PFDLLG LP   +TTVLEASAGTGKTFALA LVTRYVAEG A LD MLLITFGRAASQ
Sbjct: 1    MEPFDLLGALPEPRTTTVLEASAGTGKTFALAGLVTRYVAEGVATLDRMLLITFGRAASQ 60

Query: 61   ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120
            ELRERVR Q+VDA+R F       DD    GDN+++ HL+ G A E DAR++RLRDALAG
Sbjct: 61   ELRERVRSQIVDALRAF-------DDPAAIGDNEVVRHLVTGDAEECDARRRRLRDALAG 113

Query: 121  FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
            FDAATIATTHQFCQLVL+SLGVAGDTD+GV LVE LD+LV EIVDDLYL HFG+DRD+P 
Sbjct: 114  FDAATIATTHQFCQLVLRSLGVAGDTDSGVELVESLDDLVAEIVDDLYLAHFGQDRDEPL 173

Query: 181  LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
            LT+  ALR+A AVV N  T+LRP D  PGS AA+ V FA  V  ELETRK          
Sbjct: 174  LTHESALRLAHAVVGNAHTELRPRDPAPGSDAAVRVEFAKAVCAELETRKRKLGILHYDD 233

Query: 241  XXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                               MQ+RW +VMVDEFQDTD VQWQVID AF G  TLILIGDPK
Sbjct: 234  LLSRLADALEAPDSPARARMQRRWSIVMVDEFQDTDPVQWQVIDRAFRGHATLILIGDPK 293

Query: 301  QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
            QAIYAFRGGDIVTYLHAA TAG +RTL TN+RSD+ LV+ LQ V+R A+LGDP IVVR V
Sbjct: 294  QAIYAFRGGDIVTYLHAAATAGVQRTLGTNYRSDAPLVEGLQAVMRDAQLGDPRIVVRRV 353

Query: 361  KAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG 420
             AHH+ HRL GAPHN+                 + +PID+LR+HI +D+A+DI ALL SG
Sbjct: 354  DAHHREHRLQGAPHNEPFRLRVCTRDQFRVRPDRMIPIDVLRNHIPKDMAADIAALLNSG 413

Query: 421  ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXX 480
            AT  G  L    IAVIVE H+D  AC  AL DAGI AVYTGD+DVFSS            
Sbjct: 414  ATHCGEKLAPGHIAVIVESHRDGHACFAALADAGIPAVYTGDSDVFSSPAADDWMCLLEA 473

Query: 481  FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540
            FDQPHR G+VRAAA TMFFG+TA  LA  GD+LTDR+AETLR+WAD+ARERGVAA+FEAA
Sbjct: 474  FDQPHRSGLVRAAATTMFFGETAEALALQGDSLTDRIAETLRQWADFARERGVAAVFEAA 533

Query: 541  QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRG---GA 597
            QL GM  RVL W +G+RHMTDLAH+TQLL   +HRE+Y+LPALRDWLR QR+DRG   G 
Sbjct: 534  QLRGMGARVLRWVDGERHMTDLAHLTQLLHDTAHREQYSLPALRDWLRAQRDDRGGLRGT 593

Query: 598  TERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHD-------GGT 650
             ERNRR+DSDAAAVQIMTVWVSKGLQ+PVVYLPFAFNRN+Q R++V+FH+       G  
Sbjct: 594  VERNRRLDSDAAAVQIMTVWVSKGLQFPVVYLPFAFNRNVQPRDVVVFHEPATSDGAGDI 653

Query: 651  RCLHIGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXX 710
            RCLHIGG+ SPDF  V +    EAA DD RLTYVAMTRAQSQVVAWW+P+ DE N     
Sbjct: 654  RCLHIGGESSPDFAAVAQQARLEAAGDDVRLTYVAMTRAQSQVVAWWAPSRDELNGGLSR 713

Query: 711  XXXXXXXXDSVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSE 770
                    D VVPDR  PA+I D +A  R + W   GGP +EES+               
Sbjct: 714  LLRGRAPGDPVVPDRCDPARIDDAEAMARLRAWADEGGPVLEESIIAERVEVELPAPPDT 773

Query: 771  LATRRFDRGIDIRWRRTSYSGLIRMAE-ATGVSSEPEVTERDDEVAEV--PLTEVVMSGP 827
            LA R F R ID  WRRTSYSGLIR AE  +GV SEPEV E DDEVAE+  P TE      
Sbjct: 774  LAVRHFHRRIDPLWRRTSYSGLIRAAEQESGVGSEPEVVELDDEVAELRAPDTEPATPDV 833

Query: 828  EQPSPMADLPSGAKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWXXXXXXXXXXXX 887
            +  SPMA LP GAKFG+LVHAVLET+DPFA+DLAAELE+ +   S WW            
Sbjct: 834  DMASPMAGLPMGAKFGTLVHAVLETADPFAVDLAAELEAAVVEHSLWWPVDVPPAELAAA 893

Query: 888  XXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALL 947
               +HD            R IGL DRLREM+FEFPL              + LADVG LL
Sbjct: 894  LVPLHDTPLGPLAPGVTLRDIGLRDRLREMEFEFPL---AGGDRRDDTPDITLADVGRLL 950

Query: 948  RAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLG 1007
            RAHL A DPLAPYA RL+  AL GQ L+GYL+GS+DAVLR+ DG   RYLVVDYKTNWLG
Sbjct: 951  RAHLPADDPLAPYAARLTTGALAGQPLKGYLNGSLDAVLRV-DG---RYLVVDYKTNWLG 1006

Query: 1008 DPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLF 1067
            DP   LTAADY   RL EAMLHSDYPLQALLY VVLHRFLRWRQPGY   RH+ GVLYLF
Sbjct: 1007 DPAGELTAADYAPARLAEAMLHSDYPLQALLYCVVLHRFLRWRQPGYSARRHIAGVLYLF 1066

Query: 1068 VRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDLLDAGRAVA 1110
            VRGMCGPDTP+LDGHPAGVFSW PPAAL+  LSDLLDAG   A
Sbjct: 1067 VRGMCGPDTPVLDGHPAGVFSWQPPAALIEELSDLLDAGAVPA 1109


>tr|B1MFU8|B1MFU8_MYCA9 Tax_Id=561007 SubName:
            Full=Exodeoxyribonuclease V, beta subunit
            (RecB);[Mycobacterium abscessus]
          Length = 1081

 Score = 1315 bits (3404), Expect = 0.0
 Identities = 695/1103 (63%), Positives = 794/1103 (71%), Gaps = 23/1103 (2%)

Query: 1    MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60
            M+ FDLLGPLPA+ STTVLEASAGTGKTFALA LVTRYVAEG A LD+MLLITFGRAASQ
Sbjct: 1    MKRFDLLGPLPADRSTTVLEASAGTGKTFALAGLVTRYVAEGVATLDQMLLITFGRAASQ 60

Query: 61   ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120
            ELR+RVR Q+VDA+R F D      D        L  +L+   +AE+D RQ+RLRDALAG
Sbjct: 61   ELRDRVRGQIVDALRAFADPSTARTD--------LTQYLI---SAEQDTRQRRLRDALAG 109

Query: 121  FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
            FDAATIATTHQFC +VLKSLGVAGD+D+GVTLVE+LDELV EIV+D YL HFG+DRD PP
Sbjct: 110  FDAATIATTHQFCHIVLKSLGVAGDSDSGVTLVENLDELVCEIVNDRYLTHFGKDRDAPP 169

Query: 181  LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
            L+Y  ALR+AR VV NP+TQLRPL     S A   +GFA  VLE+LE RK          
Sbjct: 170  LSYPAALRLAREVVRNPATQLRPLQPEADSYAFAALGFARDVLEQLEIRKRRRGILGFDD 229

Query: 241  XXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                               M QRWP+VMVDEFQDTD VQWQV++ AFSG  TL+LIGDPK
Sbjct: 230  LLTRLADALNATDSPARVRMHQRWPIVMVDEFQDTDPVQWQVLERAFSGHSTLVLIGDPK 289

Query: 301  QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
            QAIYAFRGGDI TYL AA TAGDK+TL TNWRSD+ALVDRLQVVLRGA+LG P IVV DV
Sbjct: 290  QAIYAFRGGDIETYLRAAATAGDKQTLGTNWRSDAALVDRLQVVLRGAQLGGPDIVVHDV 349

Query: 361  KAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG 420
            +AHHQGHRLAGAPHND                I+ +PI  LR  IGRDLA+DIGALL+SG
Sbjct: 350  QAHHQGHRLAGAPHNDPFRLRVVSRNRDG---IKVIPIADLRRSIGRDLAADIGALLSSG 406

Query: 421  ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXX 480
            ATF GR ++A DIAVIVE HKDARACH ALT+AGI AVYTGDTDVFSS            
Sbjct: 407  ATFDGRPVRARDIAVIVEAHKDARACHTALTEAGIPAVYTGDTDVFSSDAAQDWLYLLEA 466

Query: 481  FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540
            FDQPHRPG+VRAAAAT+FFG+TA  LA GG++LTD +A TLR WA  ARERGVAA+FEAA
Sbjct: 467  FDQPHRPGLVRAAAATVFFGETAETLAVGGESLTDEIAGTLRTWAARARERGVAAVFEAA 526

Query: 541  QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
            QL GM  RVLSW+ G+R MTDLAH+T+LLQ+ +HR  +   ALRDWLR Q  + G   ER
Sbjct: 527  QLAGMGKRVLSWRGGERMMTDLAHLTELLQETAHRNGFGPAALRDWLRTQCSEGGAEAER 586

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKDS 660
            NRR+DSDAAAVQIMTVWVSKGLQ+PVVYLPF+FNR + ERE VL+H+ G RCLHIGG++ 
Sbjct: 587  NRRLDSDAAAVQIMTVWVSKGLQFPVVYLPFSFNRYVPEREYVLYHEDGLRCLHIGGRED 646

Query: 661  PDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXDS 720
            PD+   +  G  EAA D SRL YVA+TRAQSQVVAWW+P++DEPN             + 
Sbjct: 647  PDYSMADLAGRTEAARDASRLAYVALTRAQSQVVAWWAPSFDEPNGGLSRLLRGRAPGNP 706

Query: 721  VVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRGI 780
             VPD+ +PAKI+D D   R + W+A GGP VE+++               LA R FDR I
Sbjct: 707  SVPDKCSPAKISDADVLKRLRAWEAQGGPVVEDALVTGFVPAATSSPSDNLAVRVFDRPI 766

Query: 781  DIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSGA 840
            D  WRRTSYSGL+R AE +GVSSEPE+ E DDEV E+PL   + +G + PSPMA LP+GA
Sbjct: 767  DTAWRRTSYSGLLRAAEESGVSSEPEIAELDDEVDEIPLRS-MPAGADVPSPMAQLPAGA 825

Query: 841  KFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWXXXXXXXXXXXXXXXMHDXXXXXXX 900
             FGSLVHAVLET+DP A DL AEL++QI      W               MHD       
Sbjct: 826  AFGSLVHAVLETTDPLAPDLVAELQTQIIRHRERWPVEIPAAELAAALEPMHDTPLGPLL 885

Query: 901  XXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASDPLAPY 960
                 RQIGL DRL E+DFEFPL               RLADVG LLR HL A DPL  Y
Sbjct: 886  PGVTLRQIGLRDRLCELDFEFPL----AGGDAAADSFARLADVGMLLREHLAADDPLGVY 941

Query: 961  ADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYHR 1020
            A RL+G  LGGQSLRGYLSGSVDAVLR+    G RY+VVDYKTNWLG  D PLTAADY R
Sbjct: 942  ASRLTGPGLGGQSLRGYLSGSVDAVLRV----GSRYVVVDYKTNWLGTGDAPLTAADYSR 997

Query: 1021 PRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPMLD 1080
            PR++EAMLHSDYPLQALLY+VVLHRFL WR PGY P  HLGG +YLFVRGMCG  TP+++
Sbjct: 998  PRMVEAMLHSDYPLQALLYSVVLHRFLSWRLPGYRPEEHLGGAVYLFVRGMCGATTPVVE 1057

Query: 1081 GHPAGVFSWSPPAALVTALSDLL 1103
            GHPAGVFSW PP+ALV ALS+LL
Sbjct: 1058 GHPAGVFSWQPPSALVVALSELL 1080


>tr|A0QS29|A0QS29_MYCS2 Tax_Id=246196 (recB)SubName:
            Full=Exodeoxyribonuclease V, beta subunit;
            EC=3.1.11.5;[Mycobacterium smegmatis]
          Length = 1083

 Score = 1315 bits (3402), Expect = 0.0
 Identities = 701/1107 (63%), Positives = 795/1107 (71%), Gaps = 29/1107 (2%)

Query: 1    MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60
            M+ FDLLGPLPA N+TTVLEASAGTGKTFALA LVTR+VAEG A LD+MLLITFGRAASQ
Sbjct: 1    MKVFDLLGPLPAPNTTTVLEASAGTGKTFALAGLVTRFVAEGVATLDQMLLITFGRAASQ 60

Query: 61   ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120
            ELRERVR Q+V A+    D     +D +         +L+     ++ AR++RLRDALAG
Sbjct: 61   ELRERVRAQIVAALVALDDPSRACNDLEE--------YLVK---TDQQARRRRLRDALAG 109

Query: 121  FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
            FDAATIATTHQFCQ+VLKSLGVAGD+DAGVTLVE LD+LV+EIVDDLYL HFG  +DDP 
Sbjct: 110  FDAATIATTHQFCQIVLKSLGVAGDSDAGVTLVESLDDLVSEIVDDLYLAHFGGQKDDPE 169

Query: 181  LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
            L+Y +AL++AR VV NP+TQLRP D  P S AA+ + FA  VL ELE RK          
Sbjct: 170  LSYPEALKLARVVVGNPATQLRPRDPDPDSPAAVRLKFARDVLAELEIRKRRRGVLGYDD 229

Query: 241  XXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                               MQQRWP+VMVDEFQDTD VQWQVI+ AFSGR TL+LIGDPK
Sbjct: 230  LLTRLADALEPEDSPARVRMQQRWPIVMVDEFQDTDPVQWQVIERAFSGRSTLVLIGDPK 289

Query: 301  QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
            QAIYAFRGGDI TYL AA TAGDK+TL TNWRSD ALVDRLQ VLRGA+LG P IVV DV
Sbjct: 290  QAIYAFRGGDIATYLRAAATAGDKQTLGTNWRSDRALVDRLQAVLRGAQLGGPDIVVHDV 349

Query: 361  KAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG 420
            +A HQGHRL GAP ND                I   PID LR HIGRDLA+DI ALL SG
Sbjct: 350  QARHQGHRLVGAPRNDPFRLRVVSRKPGNTRVI---PIDQLRRHIGRDLAADISALLNSG 406

Query: 421  ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXX 480
            AT+  + +QA DIAVI E HKDARACH AL  AGI AVYTGD+DVF+S            
Sbjct: 407  ATWCDQPVQAKDIAVITETHKDARACHAALLAAGIPAVYTGDSDVFTSEAAEDWLYLLEA 466

Query: 481  FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540
            FDQPHRPG+VRAAAATMFFG+TA  LA GGDALTDRVA+TLREWA +ARERGVAAIFEAA
Sbjct: 467  FDQPHRPGLVRAAAATMFFGETAESLAAGGDALTDRVADTLREWAGHARERGVAAIFEAA 526

Query: 541  QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
            QL GM  RVLSWQ G+R MTDLAH+TQLLQ  +HRE + L ALRDWLR QR +RGG +ER
Sbjct: 527  QLAGMGKRVLSWQGGERLMTDLAHMTQLLQDTAHREGFGLAALRDWLRTQRSERGGESER 586

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKDS 660
            NRR+DSDAAAVQIMTVWVSKGLQ+PVVYLPFAFNR + E +LVLFHD G RCLH+GG D 
Sbjct: 587  NRRLDSDAAAVQIMTVWVSKGLQFPVVYLPFAFNRYVPEPDLVLFHDDGQRCLHVGGADP 646

Query: 661  PDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXDS 720
                 V R G  EAA DDSRLTYVA+TRAQSQVVAWW+P+YDEPN             ++
Sbjct: 647  ----AVARAGRAEAAGDDSRLTYVALTRAQSQVVAWWAPSYDEPNGGLSRLMRGRAPGEA 702

Query: 721  VVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRGI 780
            +VPD+ +P KI+DEDA +R + W+AAGGP +EESV              +LA R+F R I
Sbjct: 703  IVPDKCSPPKISDEDALERLRAWEAAGGPVIEESVIGAVSPVPPEPAPEDLAARKFFRAI 762

Query: 781  DIRWRRTSYSGLIRMAE--ATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPS 838
            D+ W+RTSYSGL+R AE    GVSSEPEVTERDDE  ++P+      G + PSPMA LP+
Sbjct: 763  DMAWKRTSYSGLLRAAETAGVGVSSEPEVTERDDEFDDIPVV-APAEGADVPSPMAHLPT 821

Query: 839  GAKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWXXXXXXXXXXXXXXXMHDXXXXX 898
            GA FGSLVHAVLET+DPFA DL AEL + I   S  W               MHD     
Sbjct: 822  GAAFGSLVHAVLETADPFAEDLTAELATHIDAHSQHWPVEVETAELAAALVPMHDTPLGP 881

Query: 899  XXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASDPLA 958
                   RQIGL DRL E+DFEFP+               RL+DVG LLR +L A DPLA
Sbjct: 882  LAPGLTLRQIGLRDRLCELDFEFPM----AGGDLRGGRFARLSDVGELLREYLPADDPLA 937

Query: 959  PYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADY 1018
             YA+RLS   LG Q LRGYLSGSVDAVLR+    G+++++VDYKTNWLG  D  LTAADY
Sbjct: 938  VYAERLSTGILGVQPLRGYLSGSVDAVLRV----GEKFVIVDYKTNWLGTGDGTLTAADY 993

Query: 1019 HRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPM 1078
             R R++EAMLHSDYPLQALLY VVLHR+L WR  GYDPA HLGGVLYLFVRGMCG  TP+
Sbjct: 994  GRRRMVEAMLHSDYPLQALLYAVVLHRYLGWRLSGYDPATHLGGVLYLFVRGMCGAGTPV 1053

Query: 1079 LDGHPAGVFSWSPPAALVTALSDLLDA 1105
            +DGHPAGVFSW PPA LV ALS LLDA
Sbjct: 1054 VDGHPAGVFSWEPPADLVVALSKLLDA 1080


>tr|Q9RPH6|Q9RPH6_MYCSM Tax_Id=1772 (recB)SubName:
            Full=RecB;[Mycobacterium smegmatis]
          Length = 1083

 Score = 1315 bits (3402), Expect = 0.0
 Identities = 701/1107 (63%), Positives = 795/1107 (71%), Gaps = 29/1107 (2%)

Query: 1    MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60
            M+ FDLLGPLPA N+TTVLEASAGTGKTFALA LVTR+VAEG A LD+MLLITFGRAASQ
Sbjct: 1    MKVFDLLGPLPAPNTTTVLEASAGTGKTFALAGLVTRFVAEGVATLDQMLLITFGRAASQ 60

Query: 61   ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120
            ELRERVR Q+V A+    D     +D +         +L+     ++ AR++RLRDALAG
Sbjct: 61   ELRERVRAQIVAALVALDDPSRACNDLEE--------YLVK---TDQQARRRRLRDALAG 109

Query: 121  FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
            FDAATIATTHQFCQ+VLKSLGVAGD+DAGVTLVE LD+LV+EIVDDLYL HFG  +DDP 
Sbjct: 110  FDAATIATTHQFCQIVLKSLGVAGDSDAGVTLVESLDDLVSEIVDDLYLAHFGGQKDDPE 169

Query: 181  LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
            L+Y +AL++AR VV NP+TQLRP D  P S AA+ + FA  VL ELE RK          
Sbjct: 170  LSYPEALKLARVVVGNPATQLRPRDPDPDSPAAVRLKFARDVLAELEIRKRRRGVLGYDD 229

Query: 241  XXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                               MQQRWP+VMVDEFQDTD VQWQVI+ AFSGR TL+LIGDPK
Sbjct: 230  LLTRLADALEPEDSPARVRMQQRWPIVMVDEFQDTDPVQWQVIERAFSGRSTLVLIGDPK 289

Query: 301  QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
            QAIYAFRGGDI TYL AA TAGDK+TL TNWRSD ALVDRLQ VLRGA+LG P IVV DV
Sbjct: 290  QAIYAFRGGDIATYLRAAATAGDKQTLGTNWRSDRALVDRLQAVLRGAQLGGPDIVVHDV 349

Query: 361  KAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG 420
            +A HQGHRL GAP ND                I   PID LR HIGRDLA+DI ALL SG
Sbjct: 350  QARHQGHRLVGAPRNDPFRLRVVSRKPGNTRVI---PIDQLRRHIGRDLAADISALLNSG 406

Query: 421  ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXX 480
            AT+  + +QA DIAVI E HKDARACH AL  AGI AVYTGD+DVF+S            
Sbjct: 407  ATWCDQPVQAKDIAVITETHKDARACHAALLAAGIPAVYTGDSDVFTSEAAEDWLYLLEA 466

Query: 481  FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540
            FDQPHRPG+VRAAAATMFFG+TA  LA GGDALTDRVA+TLREWA +ARERGVAAIFEAA
Sbjct: 467  FDQPHRPGLVRAAAATMFFGETAESLAAGGDALTDRVADTLREWAGHARERGVAAIFEAA 526

Query: 541  QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
            QL GM  RVLSWQ G+R MTDLAH+TQLLQ  +HRE + L ALRDWLR QR +RGG +ER
Sbjct: 527  QLAGMGKRVLSWQGGERLMTDLAHMTQLLQDTAHREGFGLAALRDWLRTQRSERGGESER 586

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKDS 660
            NRR+DSDAAAVQIMTVWVSKGLQ+PVVYLPFAFNR + E +LVLFHD G RCLH+GG D 
Sbjct: 587  NRRLDSDAAAVQIMTVWVSKGLQFPVVYLPFAFNRYVPEPDLVLFHDDGQRCLHVGGADP 646

Query: 661  PDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXDS 720
                 V R G  EAA DDSRLTYVA+TRAQSQVVAWW+P+YDEPN             ++
Sbjct: 647  ----AVARAGRAEAAGDDSRLTYVALTRAQSQVVAWWAPSYDEPNGGLSRLMRGRAPGEA 702

Query: 721  VVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRGI 780
            +VPD+ +P KI+DEDA +R + W+AAGGP +EESV              +LA R+F R I
Sbjct: 703  IVPDKCSPPKISDEDALERLRAWEAAGGPVIEESVIGAVSPVPPEPAPEDLAARKFFRAI 762

Query: 781  DIRWRRTSYSGLIRMAE--ATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPS 838
            D+ W+RTSYSGL+R AE    GVSSEPEVTERDDE  ++P+      G + PSPMA LP+
Sbjct: 763  DMAWKRTSYSGLLRAAETAGVGVSSEPEVTERDDEFDDIPVV-APAEGADVPSPMAHLPT 821

Query: 839  GAKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWXXXXXXXXXXXXXXXMHDXXXXX 898
            GA FGSLVHAVLET+DPFA DL AEL + I   S  W               MHD     
Sbjct: 822  GAAFGSLVHAVLETADPFAEDLTAELATHIDAHSQHWPVEVETAELAAALVPMHDTPLGP 881

Query: 899  XXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASDPLA 958
                   RQIGL DRL E+DFEFP+               RL+DVG LLR +L A DPLA
Sbjct: 882  LAPGLTLRQIGLRDRLCELDFEFPM----AGGDLRGGRFARLSDVGELLREYLPADDPLA 937

Query: 959  PYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADY 1018
             YA+RLS   LG Q LRGYLSGSVDAVLR+    G+++++VDYKTNWLG  D  LTAADY
Sbjct: 938  VYAERLSTGILGVQPLRGYLSGSVDAVLRV----GEKFVIVDYKTNWLGTGDGTLTAADY 993

Query: 1019 HRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPM 1078
             R R++EAMLHSDYPLQALLY VVLHR+L WR  GYDPA HLGGVLYLFVRGMCG  TP+
Sbjct: 994  GRRRMVEAMLHSDYPLQALLYAVVLHRYLGWRLSGYDPATHLGGVLYLFVRGMCGAGTPV 1053

Query: 1079 LDGHPAGVFSWSPPAALVTALSDLLDA 1105
            +DGHPAGVFSW PPA LV ALS LLDA
Sbjct: 1054 VDGHPAGVFSWEPPADLVVALSKLLDA 1080


>sp|P96920|EX5B_MYCTU Tax_Id=1773 (recB)RecName:
            Full=Exodeoxyribonuclease V beta chain;
            EC=3.1.11.5;[Mycobacterium tuberculosis]
          Length = 1094

 Score = 1180 bits (3053), Expect = 0.0
 Identities = 653/1112 (58%), Positives = 748/1112 (67%), Gaps = 26/1112 (2%)

Query: 1    MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60
            M  F+LLGPLP E +TTVLEASAGTGKTFALA LVTRY+AE  A LDEMLLITF RAAS+
Sbjct: 1    MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60

Query: 61   ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120
            ELRERVR Q+V+AV           DA P+G+  L+ HLL G+ AER  ++ RLRDALA 
Sbjct: 61   ELRERVRGQIVEAVGALQG------DAPPSGE--LVEHLLRGSDAERAQKRSRLRDALAN 112

Query: 121  FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
            FDAATIATTH+FC  VLKSLGVAGD  A V L E L +LVTEIVDD YL +FGR   DP 
Sbjct: 113  FDAATIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPE 172

Query: 181  LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
            LTY +AL +A AVV +P  QLRP D  PGS+AA+ + FA  VLEELE RK          
Sbjct: 173  LTYAEALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFND 232

Query: 241  XXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                               M++RW +V+VDEFQDTD +QW+V++ AFS    LILIGDPK
Sbjct: 233  LLIRLATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPK 292

Query: 301  QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
            QAIY FRGGDI TYL AA TA  + TL  NWRSD ALV+ LQ VLR A LG   IVVR  
Sbjct: 293  QAIYGFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGT 352

Query: 361  KAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG 420
             AHH GHRLA AP                     ++PI+ LR HI  DLA+D+ ALLASG
Sbjct: 353  DAHHAGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASG 412

Query: 421  ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXX 480
            ATFAGR + A DIAVIVE HKDARAC  AL +AGI A+YTGDTDVF+S            
Sbjct: 413  ATFAGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEA 472

Query: 481  FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540
            FD P R G+VRAAA TMFFG+TA  LA  GDALTDRVA TLREWAD+AR RGVAA+F+AA
Sbjct: 473  FDAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAA 532

Query: 541  QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
            QL GM  RVLS + G+R +TDLAH+ QLL + +HRER  LP LRDWLR Q +   G  E 
Sbjct: 533  QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEH 592

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKD- 659
            NRR+DSDAAAVQIMTV+V+KGLQ+P+VYLPFAFNRN++  +++L+HD GTRCL+IGGKD 
Sbjct: 593  NRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDG 652

Query: 660  SPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXD 719
                 TVE L   EAA+D+ RLTYVA+TRAQSQVVAWW+P +DE N              
Sbjct: 653  GAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQ 712

Query: 720  SVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRG 779
            S VPDR TP ++TDE AW  F QW+AAGGP+VEESV                  R F R 
Sbjct: 713  SQVPDRCTP-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRR 771

Query: 780  IDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSG 839
            ID  WRRTSYS L+R +EA  V+SEP    R DEV E+ +     SG +  SP+A LPSG
Sbjct: 772  IDTTWRRTSYSDLVRGSEAVTVTSEPAAGGRADEV-EIAVVAAPGSGADLTSPLAALPSG 830

Query: 840  AKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWW----XXXXXXXXXXXXXXXMHDXX 895
            A FGSLVHAVLET+DP A DLAAELE+Q+R  + WW                   MHD  
Sbjct: 831  ASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTP 890

Query: 896  XXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASD 955
                      RQIG+ DRLRE+DFE PL              + LADVG LL +HL   D
Sbjct: 891  LGPAAAALTLRQIGVRDRLRELDFEMPL---AGGDLRGRSPDVSLADVGELLASHLPGDD 947

Query: 956  PLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTA 1015
            PL+PYADRL    LG Q LRGYL+GS+D VLR+   PGQRYLVVDYKTN LGD     TA
Sbjct: 948  PLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRL---PGQRYLVVDYKTNHLGD-----TA 999

Query: 1016 ADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPD 1075
            ADY   RL EAMLHSDYPLQALLY VVLHRFLRWRQ  Y PARHLGGVLYLFVRGMCG  
Sbjct: 1000 ADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAA 1059

Query: 1076 TPMLDGHPAGVFSWSPPAALVTALSDLLDAGR 1107
            TP+  GHPAGVF+W+PP ALV ALSDLLD GR
Sbjct: 1060 TPVTAGHPAGVFTWNPPTALVVALSDLLDRGR 1091


>tr|C6DU07|C6DU07_MYCTK Tax_Id=478434 SubName: Full=Exonuclease
            subunit V beta recB;[Mycobacterium tuberculosis]
          Length = 1094

 Score = 1180 bits (3053), Expect = 0.0
 Identities = 653/1112 (58%), Positives = 748/1112 (67%), Gaps = 26/1112 (2%)

Query: 1    MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60
            M  F+LLGPLP E +TTVLEASAGTGKTFALA LVTRY+AE  A LDEMLLITF RAAS+
Sbjct: 1    MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60

Query: 61   ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120
            ELRERVR Q+V+AV           DA P+G+  L+ HLL G+ AER  ++ RLRDALA 
Sbjct: 61   ELRERVRGQIVEAVGALQG------DAPPSGE--LVEHLLRGSDAERAQKRSRLRDALAN 112

Query: 121  FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
            FDAATIATTH+FC  VLKSLGVAGD  A V L E L +LVTEIVDD YL +FGR   DP 
Sbjct: 113  FDAATIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPE 172

Query: 181  LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
            LTY +AL +A AVV +P  QLRP D  PGS+AA+ + FA  VLEELE RK          
Sbjct: 173  LTYAEALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFND 232

Query: 241  XXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                               M++RW +V+VDEFQDTD +QW+V++ AFS    LILIGDPK
Sbjct: 233  LLIRLATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPK 292

Query: 301  QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
            QAIY FRGGDI TYL AA TA  + TL  NWRSD ALV+ LQ VLR A LG   IVVR  
Sbjct: 293  QAIYGFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGT 352

Query: 361  KAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG 420
             AHH GHRLA AP                     ++PI+ LR HI  DLA+D+ ALLASG
Sbjct: 353  DAHHAGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASG 412

Query: 421  ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXX 480
            ATFAGR + A DIAVIVE HKDARAC  AL +AGI A+YTGDTDVF+S            
Sbjct: 413  ATFAGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEA 472

Query: 481  FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540
            FD P R G+VRAAA TMFFG+TA  LA  GDALTDRVA TLREWAD+AR RGVAA+F+AA
Sbjct: 473  FDAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAA 532

Query: 541  QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
            QL GM  RVLS + G+R +TDLAH+ QLL + +HRER  LP LRDWLR Q +   G  E 
Sbjct: 533  QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEH 592

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKD- 659
            NRR+DSDAAAVQIMTV+V+KGLQ+P+VYLPFAFNRN++  +++L+HD GTRCL+IGGKD 
Sbjct: 593  NRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDG 652

Query: 660  SPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXD 719
                 TVE L   EAA+D+ RLTYVA+TRAQSQVVAWW+P +DE N              
Sbjct: 653  GAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQ 712

Query: 720  SVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRG 779
            S VPDR TP ++TDE AW  F QW+AAGGP+VEESV                  R F R 
Sbjct: 713  SQVPDRCTP-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRR 771

Query: 780  IDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSG 839
            ID  WRRTSYS L+R +EA  V+SEP    R DEV E+ +     SG +  SP+A LPSG
Sbjct: 772  IDTTWRRTSYSDLVRGSEAVTVTSEPAAGGRADEV-EIAVVAAPGSGADLTSPLAALPSG 830

Query: 840  AKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWW----XXXXXXXXXXXXXXXMHDXX 895
            A FGSLVHAVLET+DP A DLAAELE+Q+R  + WW                   MHD  
Sbjct: 831  ASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTP 890

Query: 896  XXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASD 955
                      RQIG+ DRLRE+DFE PL              + LADVG LL +HL   D
Sbjct: 891  LGPAAAALTLRQIGVRDRLRELDFEMPL---AGGDLRGRSPDVSLADVGELLASHLPGDD 947

Query: 956  PLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTA 1015
            PL+PYADRL    LG Q LRGYL+GS+D VLR+   PGQRYLVVDYKTN LGD     TA
Sbjct: 948  PLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRL---PGQRYLVVDYKTNHLGD-----TA 999

Query: 1016 ADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPD 1075
            ADY   RL EAMLHSDYPLQALLY VVLHRFLRWRQ  Y PARHLGGVLYLFVRGMCG  
Sbjct: 1000 ADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAA 1059

Query: 1076 TPMLDGHPAGVFSWSPPAALVTALSDLLDAGR 1107
            TP+  GHPAGVF+W+PP ALV ALSDLLD GR
Sbjct: 1060 TPVTAGHPAGVFTWNPPTALVVALSDLLDRGR 1091


>tr|A5U013|A5U013_MYCTA Tax_Id=419947 (recB)SubName:
            Full=Exodeoxyribonuclease V subunit beta;[Mycobacterium
            tuberculosis]
          Length = 1094

 Score = 1180 bits (3053), Expect = 0.0
 Identities = 653/1112 (58%), Positives = 748/1112 (67%), Gaps = 26/1112 (2%)

Query: 1    MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60
            M  F+LLGPLP E +TTVLEASAGTGKTFALA LVTRY+AE  A LDEMLLITF RAAS+
Sbjct: 1    MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60

Query: 61   ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120
            ELRERVR Q+V+AV           DA P+G+  L+ HLL G+ AER  ++ RLRDALA 
Sbjct: 61   ELRERVRGQIVEAVGALQG------DAPPSGE--LVEHLLRGSDAERAQKRSRLRDALAN 112

Query: 121  FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
            FDAATIATTH+FC  VLKSLGVAGD  A V L E L +LVTEIVDD YL +FGR   DP 
Sbjct: 113  FDAATIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPE 172

Query: 181  LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
            LTY +AL +A AVV +P  QLRP D  PGS+AA+ + FA  VLEELE RK          
Sbjct: 173  LTYAEALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFND 232

Query: 241  XXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                               M++RW +V+VDEFQDTD +QW+V++ AFS    LILIGDPK
Sbjct: 233  LLIRLATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPK 292

Query: 301  QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
            QAIY FRGGDI TYL AA TA  + TL  NWRSD ALV+ LQ VLR A LG   IVVR  
Sbjct: 293  QAIYGFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGT 352

Query: 361  KAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG 420
             AHH GHRLA AP                     ++PI+ LR HI  DLA+D+ ALLASG
Sbjct: 353  DAHHAGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASG 412

Query: 421  ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXX 480
            ATFAGR + A DIAVIVE HKDARAC  AL +AGI A+YTGDTDVF+S            
Sbjct: 413  ATFAGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEA 472

Query: 481  FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540
            FD P R G+VRAAA TMFFG+TA  LA  GDALTDRVA TLREWAD+AR RGVAA+F+AA
Sbjct: 473  FDAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAA 532

Query: 541  QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
            QL GM  RVLS + G+R +TDLAH+ QLL + +HRER  LP LRDWLR Q +   G  E 
Sbjct: 533  QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEH 592

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKD- 659
            NRR+DSDAAAVQIMTV+V+KGLQ+P+VYLPFAFNRN++  +++L+HD GTRCL+IGGKD 
Sbjct: 593  NRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDG 652

Query: 660  SPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXD 719
                 TVE L   EAA+D+ RLTYVA+TRAQSQVVAWW+P +DE N              
Sbjct: 653  GAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQ 712

Query: 720  SVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRG 779
            S VPDR TP ++TDE AW  F QW+AAGGP+VEESV                  R F R 
Sbjct: 713  SQVPDRCTP-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRR 771

Query: 780  IDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSG 839
            ID  WRRTSYS L+R +EA  V+SEP    R DEV E+ +     SG +  SP+A LPSG
Sbjct: 772  IDTTWRRTSYSDLVRGSEAVTVTSEPAAGGRADEV-EIAVVAAPGSGADLTSPLAALPSG 830

Query: 840  AKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWW----XXXXXXXXXXXXXXXMHDXX 895
            A FGSLVHAVLET+DP A DLAAELE+Q+R  + WW                   MHD  
Sbjct: 831  ASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTP 890

Query: 896  XXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASD 955
                      RQIG+ DRLRE+DFE PL              + LADVG LL +HL   D
Sbjct: 891  LGPAAAALTLRQIGVRDRLRELDFEMPL---AGGDLRGRSPDVSLADVGELLASHLPGDD 947

Query: 956  PLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTA 1015
            PL+PYADRL    LG Q LRGYL+GS+D VLR+   PGQRYLVVDYKTN LGD     TA
Sbjct: 948  PLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRL---PGQRYLVVDYKTNHLGD-----TA 999

Query: 1016 ADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPD 1075
            ADY   RL EAMLHSDYPLQALLY VVLHRFLRWRQ  Y PARHLGGVLYLFVRGMCG  
Sbjct: 1000 ADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAA 1059

Query: 1076 TPMLDGHPAGVFSWSPPAALVTALSDLLDAGR 1107
            TP+  GHPAGVF+W+PP ALV ALSDLLD GR
Sbjct: 1060 TPVTAGHPAGVFTWNPPTALVVALSDLLDRGR 1091


>tr|A5WJZ5|A5WJZ5_MYCTF Tax_Id=336982 SubName: Full=Exonuclease V beta
            subunit recB;[Mycobacterium tuberculosis]
          Length = 1094

 Score = 1180 bits (3053), Expect = 0.0
 Identities = 653/1112 (58%), Positives = 748/1112 (67%), Gaps = 26/1112 (2%)

Query: 1    MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60
            M  F+LLGPLP E +TTVLEASAGTGKTFALA LVTRY+AE  A LDEMLLITF RAAS+
Sbjct: 1    MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60

Query: 61   ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120
            ELRERVR Q+V+AV           DA P+G+  L+ HLL G+ AER  ++ RLRDALA 
Sbjct: 61   ELRERVRGQIVEAVGALQG------DAPPSGE--LVEHLLRGSDAERAQKRSRLRDALAN 112

Query: 121  FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
            FDAATIATTH+FC  VLKSLGVAGD  A V L E L +LVTEIVDD YL +FGR   DP 
Sbjct: 113  FDAATIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPE 172

Query: 181  LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
            LTY +AL +A AVV +P  QLRP D  PGS+AA+ + FA  VLEELE RK          
Sbjct: 173  LTYAEALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFND 232

Query: 241  XXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                               M++RW +V+VDEFQDTD +QW+V++ AFS    LILIGDPK
Sbjct: 233  LLIRLATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPK 292

Query: 301  QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
            QAIY FRGGDI TYL AA TA  + TL  NWRSD ALV+ LQ VLR A LG   IVVR  
Sbjct: 293  QAIYGFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGT 352

Query: 361  KAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG 420
             AHH GHRLA AP                     ++PI+ LR HI  DLA+D+ ALLASG
Sbjct: 353  DAHHAGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASG 412

Query: 421  ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXX 480
            ATFAGR + A DIAVIVE HKDARAC  AL +AGI A+YTGDTDVF+S            
Sbjct: 413  ATFAGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEA 472

Query: 481  FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540
            FD P R G+VRAAA TMFFG+TA  LA  GDALTDRVA TLREWAD+AR RGVAA+F+AA
Sbjct: 473  FDAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAA 532

Query: 541  QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
            QL GM  RVLS + G+R +TDLAH+ QLL + +HRER  LP LRDWLR Q +   G  E 
Sbjct: 533  QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEH 592

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKD- 659
            NRR+DSDAAAVQIMTV+V+KGLQ+P+VYLPFAFNRN++  +++L+HD GTRCL+IGGKD 
Sbjct: 593  NRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDG 652

Query: 660  SPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXD 719
                 TVE L   EAA+D+ RLTYVA+TRAQSQVVAWW+P +DE N              
Sbjct: 653  GAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQ 712

Query: 720  SVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRG 779
            S VPDR TP ++TDE AW  F QW+AAGGP+VEESV                  R F R 
Sbjct: 713  SQVPDRCTP-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRR 771

Query: 780  IDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSG 839
            ID  WRRTSYS L+R +EA  V+SEP    R DEV E+ +     SG +  SP+A LPSG
Sbjct: 772  IDTTWRRTSYSDLVRGSEAVTVTSEPAAGGRADEV-EIAVVAAPGSGADLTSPLAALPSG 830

Query: 840  AKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWW----XXXXXXXXXXXXXXXMHDXX 895
            A FGSLVHAVLET+DP A DLAAELE+Q+R  + WW                   MHD  
Sbjct: 831  ASFGSLVHAVLETADPAAPDLAAELEAQVRRHAPWWTVDVDHAQLAPELARALLPMHDTP 890

Query: 896  XXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASD 955
                      RQIG+ DRLRE+DFE PL              + LADVG LL +HL   D
Sbjct: 891  LGPAAAALTLRQIGVRDRLRELDFEMPL---AGGDLRGRSPDVSLADVGELLASHLPGDD 947

Query: 956  PLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTA 1015
            PL+PYADRL    LG Q LRGYL+GS+D VLR+   PGQRYLVVDYKTN LGD     TA
Sbjct: 948  PLSPYADRLGSAGLGDQPLRGYLAGSIDVVLRL---PGQRYLVVDYKTNHLGD-----TA 999

Query: 1016 ADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPD 1075
            ADY   RL EAMLHSDYPLQALLY VVLHRFLRWRQ  Y PARHLGGVLYLFVRGMCG  
Sbjct: 1000 ADYGFERLTEAMLHSDYPLQALLYVVVLHRFLRWRQRDYAPARHLGGVLYLFVRGMCGAA 1059

Query: 1076 TPMLDGHPAGVFSWSPPAALVTALSDLLDAGR 1107
            TP+  GHPAGVF+W+PP ALV ALSDLLD GR
Sbjct: 1060 TPVTAGHPAGVFTWNPPTALVVALSDLLDRGR 1091


>tr|C1WNL3|C1WNL3_9ACTO Tax_Id=479435 SubName:
            Full=Exodeoxyribonuclease V, beta
            subunit/exodeoxyribonuclease V, alpha subunit;[Kribbella
            flavida DSM 17836]
          Length = 1689

 Score = 1026 bits (2652), Expect = 0.0
 Identities = 571/1027 (55%), Positives = 670/1027 (65%), Gaps = 18/1027 (1%)

Query: 1    MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60
            M  FDLLGPLP    TTVLEASAGTGKT+ALA LVTRYVAEG ARLDEMLLITFGRAASQ
Sbjct: 1    MDAFDLLGPLPT--GTTVLEASAGTGKTYALAGLVTRYVAEGAARLDEMLLITFGRAASQ 58

Query: 61   ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120
            ELRERVRCQ+++A +         +D        LL HL+DG+AAE   R  RLRDALA 
Sbjct: 59   ELRERVRCQLLEAEQALAAPEPWRNDPG------LLGHLVDGSAAELAVRHGRLRDALAT 112

Query: 121  FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
            FDAATIATTHQFCQLVL+SLGVAGDTDAGVTLVEDL +LV E+VDDLYL  F    + PP
Sbjct: 113  FDAATIATTHQFCQLVLRSLGVAGDTDAGVTLVEDLTDLVAEVVDDLYLNLFAGSAEPPP 172

Query: 181  LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
            +T   AL +A  VV NP T+L P      S   + V FA  VL E+E RK          
Sbjct: 173  ITRATALELALKVVGNPHTRLVPEKYAEASPEGVRVEFAKAVLAEVERRKRRLGVLGYDD 232

Query: 241  XXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                               MQ+RW VVMVDEFQDTD VQW+VID+AF+G  TL+LIGDPK
Sbjct: 233  LLTRLAVALEDPTAPARRRMQRRWSVVMVDEFQDTDPVQWKVIDAAFNGHSTLVLIGDPK 292

Query: 301  QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
            QAIYAFRGGDI TYL AA TAG +RTL TNWRSD  LVD LQVVL GA LG   IVV  V
Sbjct: 293  QAIYAFRGGDIATYLTAAATAGQRRTLGTNWRSDQPLVDCLQVVLGGARLGHEDIVVHPV 352

Query: 361  KAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG 420
             AHHQG RLAGAP +                  +N+P+D LRDHI RDLA+DIG LLA+G
Sbjct: 353  DAHHQGSRLAGAPCDAPFRLRVALRDQFGSAARKNIPMDELRDHITRDLAADIGQLLAAG 412

Query: 421  ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXX 480
            AT+AGR L+A DIAVIVE HKDARAC  AL  AGI AVY+GD D+FSS            
Sbjct: 413  ATYAGRPLRAGDIAVIVEAHKDARACREALAQAGIPAVYSGDLDIFSSQAAQDWLCLLEA 472

Query: 481  FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540
            F+QPHR G+VRAAA TMFFG+TA  L  GG+ LTDR+ +TLR WAD+ R +GVAA+FEAA
Sbjct: 473  FEQPHRSGLVRAAATTMFFGETAASLHAGGEELTDRIGQTLRAWADHLRAKGVAAVFEAA 532

Query: 541  QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
            QL GM+DRVL+W+ G+R +TDLAH+ +LL + +HRE + LPAL DWLR +   +G  TER
Sbjct: 533  QLKGMADRVLAWRGGERDLTDLAHLAELLHETAHREGFGLPALLDWLRQECTGKGRTTER 592

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNI-QERELVLFHDGGTRCLHIGGKD 659
             RR+DSD AAVQIMTVWVSKGLQYPVVYLPF FNR+I  E EL+LFH+ G R L IGG+ 
Sbjct: 593  TRRLDSDVAAVQIMTVWVSKGLQYPVVYLPFGFNRHIYDEDELLLFHEDGVRSLDIGGRK 652

Query: 660  SPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXD 719
              ++   E+    E A DD RLTYVA+TRAQSQVVAWW+P++DE N             D
Sbjct: 653  RAEYRANEKRWRAEVAGDDIRLTYVALTRAQSQVVAWWAPSWDEVNGGISRLLRGRKQGD 712

Query: 720  SVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRG 779
             VVPD+      +DE+     ++WQ AGGP VE+S                L    F R 
Sbjct: 713  PVVPDQLDRPS-SDEEVLVWLRRWQQAGGPVVEQSAIAEHVEPVAEQLPGGLRVATFSRE 771

Query: 780  IDIRWRRTSYSGLIRMAE--ATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQ-PSPMADL 836
            +D+ WRRTSYSGL+R AE  + GV+SE E ++  DE  + P+     + P+  PSPM   
Sbjct: 772  VDLTWRRTSYSGLVRDAEQQSAGVASEHEESQLADESVD-PVPMPAAAAPDALPSPMEGF 830

Query: 837  PSGAKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWXXXXXXXXXXXXXXXMHDXXX 896
            P GA FGSLVHAVLE +DP A DL AEL  +IR Q  +W               MH    
Sbjct: 831  PVGATFGSLVHAVLEEADPHAADLHAELAGRIREQLPFWRVDATPDALATAMLPMHATPL 890

Query: 897  XXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASDP 956
                     R +G  DRLRE+DFE PL              +RLA++  LLRAHL A DP
Sbjct: 891  GPLVPGLTLRDLGRGDRLRELDFEIPL----AGGDRAAPREVRLAELAPLLRAHLPADDP 946

Query: 957  LAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAA 1016
            L  YADRL    LGGQSLRGYL+GS+D VLR+PDG   R++VVDYKTN LGDPD+P T+A
Sbjct: 947  LLAYADRLEQPLLGGQSLRGYLTGSIDVVLRVPDGGSHRFVVVDYKTNRLGDPDQPATSA 1006

Query: 1017 DYHRPRL 1023
             Y R +L
Sbjct: 1007 QYGRDQL 1013


>tr|A1SDB2|A1SDB2_NOCSJ Tax_Id=196162 SubName:
            Full=Exodeoxyribonuclease V, beta subunit;[Nocardioides
            sp.]
          Length = 1111

 Score =  931 bits (2406), Expect = 0.0
 Identities = 546/1125 (48%), Positives = 665/1125 (59%), Gaps = 39/1125 (3%)

Query: 1    MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60
            +RPF +  PLPA   T +LEASAGTGKT+ + AL+TRYVAEG ARLD++L++TFGRAASQ
Sbjct: 4    VRPFAITDPLPA--GTVLLEASAGTGKTWTIGALLTRYVAEGVARLDQLLVVTFGRAASQ 61

Query: 61   ELRERVRCQMVDAVRVFHDSRNGSDDADPA-----GDNQLLAHLLDGTAAERDARQQRLR 115
            ELRERVR Q+V+A RV  D     D  DP      GD++L+  L    A ER    +R+ 
Sbjct: 62   ELRERVRAQLVEAERVLGDDPVAGDSGDPGDPGDPGDSELVTLLRSWGADERRRGHRRVT 121

Query: 116  DALAGFDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRD 175
            +ALAGFDAATIATTHQFC +VL SLGVAGDTD+   LVEDLD+LV E VDDLYL  F   
Sbjct: 122  EALAGFDAATIATTHQFCSMVLDSLGVAGDTDSRARLVEDLDDLVKETVDDLYLRAFADA 181

Query: 176  RDDPPLTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXX 235
              +P  T+ +A+ IARA V +P  +L P  A   + A   V FA  V  EL+ RK     
Sbjct: 182  --EPAFTHDEAMAIARAAVGDPQARLEPAGADRSTIAGRKVSFADAVRTELDRRKRRLGI 239

Query: 236  XXXXXXXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLIL 295
                                    M+ RW +V+VDEFQDTD VQW+V+D AFSG  T++L
Sbjct: 240  LSYDDLLSQLADALAQPGSAAAQRMRARWRIVLVDEFQDTDPVQWEVLDRAFSGHATMVL 299

Query: 296  IGDPKQAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAI 355
            IGDPKQAIYAFRGGD+ TYL AA+TA  ++TLA N RSD  L+  +Q +L GAELGD  I
Sbjct: 300  IGDPKQAIYAFRGGDVTTYLRAAETAQTRQTLAVNRRSDGPLLAAVQTLLAGAELGDERI 359

Query: 356  VVRDVKAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGA 415
            VV DV AHH   RLAGAP                      L +  +R H+ RDLA D+  
Sbjct: 360  VVHDVTAHHGESRLAGAPVPHPFRLRVVRRDTFGRRGGSTLTVGQVRPHVARDLALDVRR 419

Query: 416  LLASGATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXX 475
            LLASGAT+ G  ++  D+AVI  +H D      AL + G+ AV  G   VF++       
Sbjct: 420  LLASGATWCGEPIRPRDVAVISYRHADLATVREALLEVGVPAVIAGGGSVFATPAAIEWL 479

Query: 476  XXXXXFDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAA 535
                  +QPHR   VR+AA T FFG TA +L   GD LTD VA+TLR W +    RG+AA
Sbjct: 480  TLLEALEQPHRSTRVRSAALTCFFGHTAVELDARGDDLTDEVADTLRGWVELFAGRGLAA 539

Query: 536  IFEAAQLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQ-REDR 594
            + EAA + G+ +RVL+   G R +TDL H+ + L +V+   R+ LP+L  WLRGQ  E R
Sbjct: 540  VLEAANVAGLPERVLAEIGGDRRLTDLRHIGEALHEVTLVARHGLPSLLTWLRGQVTEGR 599

Query: 595  GG-ATERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHD-GGTRC 652
             G   ER RR+DSDAAAVQ++T+  SKGL+YPVVY+P   +R + +    LFHD GGTRC
Sbjct: 600  AGRGVERTRRLDSDAAAVQLVTIHASKGLEYPVVYVPALADRFVPKPTRPLFHDDGGTRC 659

Query: 653  LHIGGKDSPDFGTVE--RLGAKEAANDDSRLTYVAMTRAQSQVVAWWSP---AYDEPNXX 707
            L +GG  S D G  +  R  A E A +  RL YVA TRA+SQVVAWW+P   A   P   
Sbjct: 660  LDVGGARSDD-GWADHCRRWADEEAGEWLRLLYVATTRAKSQVVAWWAPTKNAVASPLHR 718

Query: 708  XXXXXXXXXXXDSVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXX 767
                       +      A PA   D+     F +W+  GGP+ E ++            
Sbjct: 719  MLMRDGDGPDGEMSASVPAAPAVPDDDAVVTLFSRWRERGGPSPEAAIHADPGADPPRPA 778

Query: 768  XSELATRRFDRGIDIRWRRTSYSGLIRM---AEATGVSSEPEVTERDDEVAE---VPLTE 821
              +LA R F R ID  WRR SYS L R+   A A  V SEPE+T ++DE      VP+  
Sbjct: 779  TPDLAARTFTRTIDTEWRRASYSSLSRVEVAAPAGAVVSEPEITGKEDEALAPEAVPVAP 838

Query: 822  VVMSGPEQPSPMADLPSGAKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWXXXXXX 881
            ++ S  + PSPMA LP GA FGSLVHAVLE +DP A+DL AEL   I  Q  WW      
Sbjct: 839  LLAS--DVPSPMAGLPVGATFGSLVHAVLEHTDPEAVDLRAELLGHIDEQLGWWPVDLDR 896

Query: 882  XXXXXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLA 941
                     + D            RQ+ L DRLREM+FE PL                L 
Sbjct: 897  EELADALVAVCDSPLGPLAAGTTLRQVTLGDRLREMEFELPLGDGL------------LG 944

Query: 942  DVGALLRAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDY 1001
            D+  LL  HL   DP+  Y   L G  LG Q+LRGYL+GSVD VLR+    G RYLVVDY
Sbjct: 945  DLRPLLERHLPPGDPVRAYTAHLDGP-LGEQTLRGYLTGSVDVVLRLRSEAGPRYLVVDY 1003

Query: 1002 KTNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLG 1061
            KTNWLG  D PLTA  Y    L  AM HSDYPLQALLY  VLHRFLRWRQPGYDP +HLG
Sbjct: 1004 KTNWLGPTDEPLTAHSYASVALDAAMGHSDYPLQALLYVAVLHRFLRWRQPGYDPEQHLG 1063

Query: 1062 GVLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDLLDAG 1106
            GVLYL++RGMCGPDTP +DG P GVF+W PP ALV  LSDLLD G
Sbjct: 1064 GVLYLYLRGMCGPDTPSVDGAPCGVFAWRPPVALVEELSDLLDGG 1108


>tr|Q7U1L0|Q7U1L0_MYCBO Tax_Id=1765 (recBa)SubName: Full=PROBABLE
           EXONUCLEASE V (BETA CHAIN) RECBA [FIRST PART]
           (EXODEOXYRIBONUCLEASE V BETA CHAIN)(EXODEOXYRIBONUCLEASE
           V POLYPEPTIDE); EC=3.1.11.5;[Mycobacterium bovis]
          Length = 897

 Score =  921 bits (2380), Expect = 0.0
 Identities = 508/869 (58%), Positives = 592/869 (68%), Gaps = 11/869 (1%)

Query: 1   MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60
           M  F+LLGPLP E +TTVLEASAGTGKTFALA LVTRY+AE  A LDEMLLITF RAAS+
Sbjct: 1   MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60

Query: 61  ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120
           ELRERVR Q+V+A+           DA P+G+  L+ HLL G+ AER  ++ RLRDALA 
Sbjct: 61  ELRERVRGQIVEALGALQG------DAPPSGE--LVEHLLRGSDAERAQKRSRLRDALAN 112

Query: 121 FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
           FDAATIATTH+FC  VLKSLGVAGD  A V L E L +LVTEIVDD YL +FGR   DP 
Sbjct: 113 FDAATIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPE 172

Query: 181 LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
           LTY +AL +A AVV +P  QLRP D  PGS+AA+ + FA  VLEELE RK          
Sbjct: 173 LTYAEALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFND 232

Query: 241 XXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                              M++RW +V+VDEFQDTD +QW+V++ AFS    LILIGDPK
Sbjct: 233 LLIRLATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPK 292

Query: 301 QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
           QAIY FRGGDI TYL AA TA  + TL  NWRSD ALV+ LQ VLR A LG   IVVR  
Sbjct: 293 QAIYGFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGT 352

Query: 361 KAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG 420
            AHH GHRLA AP                     ++PI+ LR HI  DLA+D+ ALLASG
Sbjct: 353 DAHHAGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASG 412

Query: 421 ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXX 480
           ATFAGR + A DIAVIVE HKDARAC  AL +AGI A+YTGDTDVF+S            
Sbjct: 413 ATFAGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEA 472

Query: 481 FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540
           FD P R G+VRAAA TMFFG+TA  LA  GDALTDRVA TLREWAD+AR RGVAA+F+AA
Sbjct: 473 FDAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLREWADHARHRGVAAVFQAA 532

Query: 541 QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
           QL GM  RVLS + G+R +TDLAH+ QLL + +HRER  LP LRDWLR Q +   G  E 
Sbjct: 533 QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEH 592

Query: 601 NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKD- 659
           NRR+DSDAAAVQIMTV+V+KGLQ+P+VYLPFAFNRN++  +++L+HD GTRCL+IGGKD 
Sbjct: 593 NRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDG 652

Query: 660 SPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXD 719
                TVE L   EAA+D+ RLTYVA+TRAQSQVVAWW+P +DE N              
Sbjct: 653 GAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQ 712

Query: 720 SVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRG 779
           S VPDR TP ++TDE AW  F QW+AAGGP+VEESV                  R F R 
Sbjct: 713 SQVPDRCTP-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRR 771

Query: 780 IDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSG 839
           ID  WRRTSYS L+R +EA  V+SEP    R DEV E+ +     SG +  SP+A LPSG
Sbjct: 772 IDTTWRRTSYSDLVRGSEAVTVTSEPAAGGRADEV-EIAVFAAPGSGADLTSPLAALPSG 830

Query: 840 AKFGSLVHAVLETSDPFAIDLAAELESQI 868
           A FGSLVHAVLET+DP A DLAAELE+Q+
Sbjct: 831 ASFGSLVHAVLETADPAAPDLAAELEAQV 859


>tr|C1AKW1|C1AKW1_MYCBT Tax_Id=561275 (recBa)SubName: Full=Putative
           exonuclease V subunit beta; EC=3.1.11.5;[Mycobacterium
           bovis]
          Length = 897

 Score =  919 bits (2375), Expect = 0.0
 Identities = 507/869 (58%), Positives = 591/869 (68%), Gaps = 11/869 (1%)

Query: 1   MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60
           M  F+LLGPLP E +TTVLEASAGTGKTFALA LVTRY+AE  A LDEMLLITF RAAS+
Sbjct: 1   MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60

Query: 61  ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120
           ELRERVR Q+V+A+           DA P+G+  L+ HLL G+ AER  ++ RLRDALA 
Sbjct: 61  ELRERVRGQIVEALGALQG------DAPPSGE--LVEHLLRGSDAERAQKRSRLRDALAN 112

Query: 121 FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
           FDAATIATTH+FC  VLKSLGVAGD  A V L E L +LVTEIVDD YL +FGR   DP 
Sbjct: 113 FDAATIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPE 172

Query: 181 LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
           LTY +AL +A AVV +P  QLRP D  PGS+AA+ + FA  VLEELE RK          
Sbjct: 173 LTYAEALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFND 232

Query: 241 XXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                              M++RW +V+VDEFQDTD +QW+V++ AFS    LILIGDPK
Sbjct: 233 LLIRLATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPK 292

Query: 301 QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
           QAIY FRGGDI TYL AA TA  + TL  NWRSD ALV+ LQ VLR A LG   IVVR  
Sbjct: 293 QAIYGFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGT 352

Query: 361 KAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG 420
            AHH GHRLA AP                     ++PI+ LR HI  DLA+D+ ALLASG
Sbjct: 353 DAHHAGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASG 412

Query: 421 ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXX 480
           ATFAGR + A DIAVIVE HKDARAC  AL +AGI A+YTGDTDVF+S            
Sbjct: 413 ATFAGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEA 472

Query: 481 FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540
           FD P R G+VRAAA TMFFG+TA  LA  GDALTDRVA TL EWAD+AR RGVAA+F+AA
Sbjct: 473 FDAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLHEWADHARHRGVAAVFQAA 532

Query: 541 QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
           QL GM  RVLS + G+R +TDLAH+ QLL + +HRER  LP LRDWLR Q +   G  E 
Sbjct: 533 QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEH 592

Query: 601 NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKD- 659
           NRR+DSDAAAVQIMTV+V+KGLQ+P+VYLPFAFNRN++  +++L+HD GTRCL+IGGKD 
Sbjct: 593 NRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDG 652

Query: 660 SPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXD 719
                TVE L   EAA+D+ RLTYVA+TRAQSQVVAWW+P +DE N              
Sbjct: 653 GAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQ 712

Query: 720 SVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRG 779
           S VPDR TP ++TDE AW  F QW+AAGGP+VEESV                  R F R 
Sbjct: 713 SQVPDRCTP-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRR 771

Query: 780 IDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSG 839
           ID  WRRTSYS L+R +EA  V+SEP    R DEV E+ +     SG +  SP+A LPSG
Sbjct: 772 IDTTWRRTSYSDLVRGSEAVTVTSEPAAGGRADEV-EIAVFAAPGSGADLTSPLAALPSG 830

Query: 840 AKFGSLVHAVLETSDPFAIDLAAELESQI 868
           A FGSLVHAVLET+DP A DLAAELE+Q+
Sbjct: 831 ASFGSLVHAVLETADPAAPDLAAELEAQV 859


>tr|A1KGA8|A1KGA8_MYCBP Tax_Id=410289 (recBa)SubName: Full=Probable
           exonuclease V (Beta chain) recBa [first part];
           EC=3.1.11.5;[Mycobacterium bovis]
          Length = 897

 Score =  919 bits (2375), Expect = 0.0
 Identities = 507/869 (58%), Positives = 591/869 (68%), Gaps = 11/869 (1%)

Query: 1   MRPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQ 60
           M  F+LLGPLP E +TTVLEASAGTGKTFALA LVTRY+AE  A LDEMLLITF RAAS+
Sbjct: 1   MDRFELLGPLPREGTTTVLEASAGTGKTFALAGLVTRYLAETAATLDEMLLITFNRAASR 60

Query: 61  ELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAG 120
           ELRERVR Q+V+A+           DA P+G+  L+ HLL G+ AER  ++ RLRDALA 
Sbjct: 61  ELRERVRGQIVEALGALQG------DAPPSGE--LVEHLLRGSDAERAQKRSRLRDALAN 112

Query: 121 FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
           FDAATIATTH+FC  VLKSLGVAGD  A V L E L +LVTEIVDD YL +FGR   DP 
Sbjct: 113 FDAATIATTHEFCGSVLKSLGVAGDNAADVELKESLTDLVTEIVDDRYLANFGRQETDPE 172

Query: 181 LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
           LTY +AL +A AVV +P  QLRP D  PGS+AA+ + FA  VLEELE RK          
Sbjct: 173 LTYAEALALALAVVDDPCAQLRPPDPEPGSKAAVRLRFAAEVLEELERRKGRLRAQGFND 232

Query: 241 XXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                              M++RW +V+VDEFQDTD +QW+V++ AFS    LILIGDPK
Sbjct: 233 LLIRLATALEAADSPARDRMRERWRIVLVDEFQDTDPMQWRVLERAFSRHSALILIGDPK 292

Query: 301 QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
           QAIY FRGGDI TYL AA TA  + TL  NWRSD ALV+ LQ VLR A LG   IVVR  
Sbjct: 293 QAIYGFRGGDIHTYLKAAGTADARYTLGVNWRSDRALVESLQTVLRDATLGHADIVVRGT 352

Query: 361 KAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG 420
            AHH GHRLA AP                     ++PI+ LR HI  DLA+D+ ALLASG
Sbjct: 353 DAHHAGHRLASAPRPAPFRLRVVKRHTLGYDGTAHVPIEALRRHIPDDLAADVAALLASG 412

Query: 421 ATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXX 480
           ATFAGR + A DIAVIVE HKDARAC  AL +AGI A+YTGDTDVF+S            
Sbjct: 413 ATFAGRPVVAADIAVIVEHHKDARACRNALAEAGIPAIYTGDTDVFASQAAKDWLCLLEA 472

Query: 481 FDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAA 540
           FD P R G+VRAAA TMFFG+TA  LA  GDALTDRVA TL EWAD+AR RGVAA+F+AA
Sbjct: 473 FDAPQRSGLVRAAACTMFFGETAESLAAEGDALTDRVAGTLHEWADHARHRGVAAVFQAA 532

Query: 541 QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
           QL GM  RVLS + G+R +TDLAH+ QLL + +HRER  LP LRDWLR Q +   G  E 
Sbjct: 533 QLAGMGRRVLSQRGGERDLTDLAHIAQLLHEAAHRERLGLPGLRDWLRRQAKAGAGPPEH 592

Query: 601 NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKD- 659
           NRR+DSDAAAVQIMTV+V+KGLQ+P+VYLPFAFNRN++  +++L+HD GTRCL+IGGKD 
Sbjct: 593 NRRLDSDAAAVQIMTVFVAKGLQFPIVYLPFAFNRNVRSDDILLYHDDGTRCLYIGGKDG 652

Query: 660 SPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXD 719
                TVE L   EAA+D+ RLTYVA+TRAQSQVVAWW+P +DE N              
Sbjct: 653 GAQRRTVEGLNRVEAAHDNLRLTYVALTRAQSQVVAWWAPTFDEVNGGLSRLLRGRRPGQ 712

Query: 720 SVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRG 779
           S VPDR TP ++TDE AW  F QW+AAGGP+VEESV                  R F R 
Sbjct: 713 SQVPDRCTP-RVTDEQAWAVFAQWEAAGGPSVEESVIGARSSLEKPVPVPGFEVRHFHRR 771

Query: 780 IDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSG 839
           ID  WRRTSYS L+R +EA  V+SEP    R DEV E+ +     SG +  SP+A LPSG
Sbjct: 772 IDTTWRRTSYSDLVRGSEAVTVTSEPAAGGRADEV-EIAVFAAPGSGADLTSPLAALPSG 830

Query: 840 AKFGSLVHAVLETSDPFAIDLAAELESQI 868
           A FGSLVHAVLET+DP A DLAAELE+Q+
Sbjct: 831 ASFGSLVHAVLETADPAAPDLAAELEAQV 859


>tr|C8XGW9|C8XGW9_NAKMY Tax_Id=479431 SubName:
            Full=Exodeoxyribonuclease V, beta subunit;
            EC=3.1.11.5;[Nakamurella multipartita]
          Length = 1139

 Score =  822 bits (2122), Expect = 0.0
 Identities = 518/1136 (45%), Positives = 637/1136 (56%), Gaps = 47/1136 (4%)

Query: 4    FDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELR 63
            FD  GPLP    TT+LEASAGTGKT A+  LVTRY+AEG AR D++L+ITFGRAASQELR
Sbjct: 12   FDACGPLP--RGTTLLEASAGTGKTHAIGDLVTRYIAEGVARPDQLLVITFGRAASQELR 69

Query: 64   ERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAH---LLDGTAAERDARQQRLRDALAG 120
            ERVR  +V A R   D       ADP   + LLA      D   A+   R+ RLR ALAG
Sbjct: 70   ERVRDHLVRAERALADPAAARAGADPV--HALLAGGPGAHDVDEAQVGRRRDRLRAALAG 127

Query: 121  FDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
            +DA+TI TTHQFCQ VL  LGVAGD D  V LV+ LD+L+ ++VDDLY+  F R RD PP
Sbjct: 128  YDASTILTTHQFCQFVLTGLGVAGDADPDVELVDTLDDLIVQVVDDLYIAAFAR-RDLPP 186

Query: 181  LTYRD-ALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXX 239
            +  RD AL +AR VV +P   L P D  P S A   + F   V  E+E RK         
Sbjct: 187  VFDRDTALALARRVVDDPQALLAPPDPDPISPANWRIKFGQRVRREVEERKRQRRILGYD 246

Query: 240  XXXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDP 299
                                M++RW  V+VDEFQDTD VQWQ++D AFSG  T++LIGDP
Sbjct: 247  DLLGRLATALAPADAPARERMRRRWSFVLVDEFQDTDPVQWQILDRAFSGHATMVLIGDP 306

Query: 300  KQAIYAFRGGDIVTYLHAAQTAGDKR-TLATNWRSDSALVDRLQVVLRGAELGDPAIVVR 358
            KQ+IYAFRGGD+ TYL AA TAG  R TL  NWR+D  LV  LQV+L    LG P IVVR
Sbjct: 307  KQSIYAFRGGDVPTYLAAAHTAGPARATLDRNWRTDPPLVTALQVLLHELTLGSPEIVVR 366

Query: 359  DVKAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLA 418
             V +   G RL GAP                    + +PID  R+ I RDLA+D+  LL 
Sbjct: 367  PVVSALPGPRLHGAPSAAPLRLRVLRRDQVNCGAGELIPIDRARELIARDLAADLAELLG 426

Query: 419  SGATFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXX 478
            +GATF  + LQA  +AVIV  HK AR    AL   GI AV  G + VF +          
Sbjct: 427  AGATFDHKPLQAGHVAVIVGTHKQARTVQTALIRVGIPAVVAGSSSVFQTEAADQWVTLL 486

Query: 479  XXFDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFE 538
               +QPHR   VRAAA T F G +A DLA  G+  TD ++  +  WA     RGVAA+ E
Sbjct: 487  EALEQPHRAARVRAAALTAFVGWSAADLAARGEEATDELSVLISGWAGVLATRGVAALLE 546

Query: 539  AAQLG-GMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQR-EDRGG 596
               +  G+  RVL    G+R +TDL HV QLLQ  + ++   + AL +WLR +R +DR  
Sbjct: 547  VVGVETGLPARVLGRVGGERLLTDLRHVGQLLQTAAVQDSLGVAALAEWLRRRRADDRLD 606

Query: 597  AT-ERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQ-ERELVLFHDGGTRCLH 654
             T +R RR+++DAAA Q++T+  SKGLQYPVVYLPFAF+R    E +++L H  G R L 
Sbjct: 607  VTADRVRRLETDAAACQVVTLHASKGLQYPVVYLPFAFDRWYNDEPDVLLLHQDGHRVLD 666

Query: 655  IGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXX 714
            IGG D+P  G        E A +  R  YV +TRAQSQVV WW+P  +            
Sbjct: 667  IGGPDTPGRGRRRDQALAEEAGEALRHLYVGLTRAQSQVVTWWAPTKNTRTSGLHRVLFG 726

Query: 715  XXXXDSVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEE-SVXXXXXXXXXXXXXSELAT 773
                D  VPD       +DE A  R   WQ  G   +E+  V              ELA 
Sbjct: 727  DRDFDGGVPDSVKVP--SDEAARTRLDGWQQRGALVLEQVGVSAARPPAADAPRPDELAV 784

Query: 774  RRFDRGIDI-RWRRTSYS--------GLIRMAEA------TGVSSEPEVTERDDEVAEV- 817
                R +++ RWRR SYS        GL+  A+A       GV SEPE  E  DE   + 
Sbjct: 785  AVLHRDLELQRWRRVSYSSLSAAGSSGLLIGADAGPVAGDLGVGSEPEHPELADEDGALA 844

Query: 818  -------PLTEVVMSGPEQPSPMADLPSGAKFGSLVHAVLETSDPFAIDLAAELESQIRV 870
                   P+ + + +     SPMADLP GA FG+LVHAV ET+DP A DL A++ ++   
Sbjct: 845  APAGAPDPVADPMAALRATLSPMADLPVGATFGTLVHAVFETTDPRAADLPAQVRARCAE 904

Query: 871  QSAWWXXXXXXXXXXXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXX 930
            Q A                 +                +G  DRL E++FE PL       
Sbjct: 905  QVARVGFPLDPDTLAAALVPVLRTSLGPLAGGLTLADLGTRDRLTELEFELPLAGGDRAA 964

Query: 931  XXXXXXXLRLADVGALLRAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPD 990
                   L L D+  ++R HL A+DPLA YADRL+  +     LRGYL+GS+DAVLR+P 
Sbjct: 965  GPVPD--LVLGDLAPVIRRHLPAADPLAGYADRLAAPSFAELPLRGYLTGSLDAVLRLP- 1021

Query: 991  GPGQRYLVVDYKTNWLGDPDR--PLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLR 1048
              G RYLV DYKTNWLGD D   PL+  DY    +  AM  SDYPLQA+LYTV LHRFLR
Sbjct: 1022 --GPRYLVADYKTNWLGDFDSGAPLSLWDYRPAAMDAAMAGSDYPLQAMLYTVALHRFLR 1079

Query: 1049 WRQPGYDPARHLGGVLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDLLD 1104
            WRQPGY P RH+ GVLYLFVRGM GPDTP +DG P GVF W+PP  L+TA+SDLLD
Sbjct: 1080 WRQPGYHPGRHIAGVLYLFVRGMAGPDTPEIDGRPCGVFGWAPPVELITAVSDLLD 1135


>tr|Q73SI1|Q73SI1_MYCPA Tax_Id=1770 SubName: Full=Putative
            uncharacterized protein;[Mycobacterium paratuberculosis]
          Length = 619

 Score =  789 bits (2037), Expect = 0.0
 Identities = 401/618 (64%), Positives = 462/618 (74%), Gaps = 5/618 (0%)

Query: 489  IVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAIFEAAQLGGMSDR 548
            +VRAAAATMFFG+TA  LA GGDALTDR+A+TLREWA ++RERGVAAIFEAAQL GMS+R
Sbjct: 1    MVRAAAATMFFGETAETLAAGGDALTDRIAQTLREWAGHSRERGVAAIFEAAQLLGMSNR 60

Query: 549  VLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATERNRRIDSDA 608
            VL WQ G RHMTDLAH+TQLL +V+HRE + LPALRDWLR QR++R GA ERNRR+DSDA
Sbjct: 61   VLGWQGGARHMTDLAHLTQLLGEVAHREHHNLPALRDWLRRQRDERSGAPERNRRLDSDA 120

Query: 609  AAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHD-GGTRCLHIGGKDSPDFGTVE 667
            AAVQIMTV+VSKGLQYP+VYLPFAF+RN  + ++VLFHD  GTRCLH+GGKDSPDF TVE
Sbjct: 121  AAVQIMTVFVSKGLQYPIVYLPFAFHRNTTDSDVVLFHDEDGTRCLHVGGKDSPDFKTVE 180

Query: 668  RLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXDSVVPDRAT 727
            RLG KE A+DDSRLTYVA+TRAQ+QVVAWWSPAY EPN             + VVPDR  
Sbjct: 181  RLGRKEDASDDSRLTYVALTRAQAQVVAWWSPAYHEPNGGLSRLLRGRRPGEPVVPDRCE 240

Query: 728  PAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRGIDIRWRRT 787
            PAKI+D DA  R ++W+AAGGP +EESV             + L  R F RGID  WRRT
Sbjct: 241  PAKISDADALARLREWEAAGGPVIEESVPAPAPPLSGVPVPARLENRHFHRGIDTGWRRT 300

Query: 788  SYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSGAKFGSLVH 847
            SYSGLIR A+ +GV SEPE    DDEV ++ L      G +  SPMADLP+GA FG+LVH
Sbjct: 301  SYSGLIRQAQPSGVGSEPEAAGLDDEVGDILLAPATSVG-DVASPMADLPAGATFGTLVH 359

Query: 848  AVLETSDPFAIDLAAELESQIRVQSAWWXXXXXXXXXXXXXXXMHDXXXXXXXXXXXXRQ 907
            AVL+T+DPFA DLAAEL ++IR  S WW               MHD            R+
Sbjct: 360  AVLQTADPFAPDLAAELTARIREHSVWWPVAATPEDMAAAMVPMHDTPLGPLAGGLTLRR 419

Query: 908  IGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASDPLAPYADRLSGD 967
            IGL DRL E+DFE PL              +RLAD+  LLRAHL A D LA YADRL+  
Sbjct: 420  IGLSDRLCELDFELPLAGGDRRSAPPE---VRLADLSPLLRAHLPADDVLACYADRLTDR 476

Query: 968  ALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYHRPRLIEAM 1027
            +LG + LRGYL+GS+DAVLRIPDG G RYLVVDYKTN LGD   PLTAADY RPR++EAM
Sbjct: 477  SLGAEPLRGYLTGSIDAVLRIPDGAGHRYLVVDYKTNRLGDAQHPLTAADYDRPRMVEAM 536

Query: 1028 LHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPMLDGHPAGVF 1087
            LHSDYPLQALLY+ VLHRFLRWR  GY+P RHLGG+LYLFVRGMCGPDTP+ DGHP+GVF
Sbjct: 537  LHSDYPLQALLYSAVLHRFLRWRLAGYEPDRHLGGILYLFVRGMCGPDTPVRDGHPSGVF 596

Query: 1088 SWSPPAALVTALSDLLDA 1105
             W PP++L+TALSDLLDA
Sbjct: 597  DWRPPSSLITALSDLLDA 614


>tr|A6W6P2|A6W6P2_KINRD Tax_Id=266940 SubName:
            Full=Exodeoxyribonuclease V, beta subunit;[Kineococcus
            radiotolerans]
          Length = 1125

 Score =  685 bits (1767), Expect = 0.0
 Identities = 472/1146 (41%), Positives = 592/1146 (51%), Gaps = 75/1146 (6%)

Query: 4    FDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELR 63
            FDL GPLP   +TTVLEASAGTGKT+ +A LVTRYVAEG A +D++L++TFGRAA+ ELR
Sbjct: 11   FDLAGPLPV--ATTVLEASAGTGKTYTIAGLVTRYVAEGVATVDQLLVVTFGRAATAELR 68

Query: 64   ERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLL--DGTAAERDARQQRLRDALAGF 121
            +RVR ++V       D  +     D      +LAHL   D  AAE  AR   L +ALAGF
Sbjct: 69   DRVRERLVATRDALADPASARRSRDA-----VLAHLAADDARAAEHRAR---LSEALAGF 120

Query: 122  DAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDD-PP 180
            D AT+AT H+FC+ VL SLG A D D   TLVED+D+LV E+ DDLYL    R     PP
Sbjct: 121  DTATVATIHEFCRQVLTSLGTAADVDPSATLVEDVDDLVEEVCDDLYLRFAVRPGAGVPP 180

Query: 181  LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
                 ALRIARA V     ++ P D  PGS   + V FA  V  E+E RK          
Sbjct: 181  FDRPTALRIARAAVDRADARIEPPDTLPGSPENLRVRFALGVRREVEARKRSRRVLGFDD 240

Query: 241  XXXXXXXXXXXXXXXXXXX--MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGD 298
                                 +++R+ VV+VDEFQDTDAVQW V+ +AF G+  L+LIGD
Sbjct: 241  LLTRLRDALTDPVAGPVACERLRRRYSVVLVDEFQDTDAVQWDVLRTAFHGQGPLVLIGD 300

Query: 299  PKQAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVR 358
            PKQAIYAFRG D+ +YL AA  AG   TL+TN RSD  ++     +LRGA LG+  IVVR
Sbjct: 301  PKQAIYAFRGADVRSYLDAAGVAGTTATLSTNHRSDPLVLAGTAALLRGAALGEQRIVVR 360

Query: 359  DVKAHHQGHRL---AGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGA 415
             V A H    L   +GAP                       P+   R  + RD A+ + A
Sbjct: 361  PVDAAHAAAALVDGSGAPDPAPVRVRVLERDGLPTTGRGLPPVGEARAVVARDTAAQVVA 420

Query: 416  LLASGATF-----AGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXX 470
            +L  G          R L+A D+AV+V     A      L   G+  V +    VF++  
Sbjct: 421  VLREGLRVRPRDGGERDLEAGDVAVLVRTGAQAALVQEELRRRGVPCVLSRGPSVFATPA 480

Query: 471  XXXXXXXXXXFDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARE 530
                       +QPHR   VR  A + F G++A +L   GD  TD ++  LREW     E
Sbjct: 481  AQEWISLLEAVEQPHRAPRVRRVALSSFVGRSAAELDAAGDRATDELSVQLREWGAVLTE 540

Query: 531  RGVAAIF----EAAQLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLP----- 581
            RGVA  F    EA +L G   R+L  + G+R +TDL H+ ++L    HRE    P     
Sbjct: 541  RGVAGAFAVVGEAHRLPG---RLLGVEGGERRLTDLRHIAEVL----HRESALNPGGGVS 593

Query: 582  ALRDWLRGQREDRGGAT--ERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNR---- 635
            +L  WLR + E+  G    ER+RR+D+D AAVQI TV  SKGL++ VV +PF ++     
Sbjct: 594  SLLSWLRARVEEAAGDADRERSRRLDTDRAAVQIATVHTSKGLEFEVVCVPFGWDAPGGG 653

Query: 636  NIQERELVLFHDGGTRCLHIGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVA 695
              ++R  V     G R LH+GG  +P +    R    E   ++ RL YVA+TRA S+++ 
Sbjct: 654  GSKDRLPVAHAPDGPRALHVGGPGAPGYAAACRAADTEDLGEELRLLYVAVTRAVSRLLV 713

Query: 696  WWSPAYDEPNXXXXXXXXXXXXXDSVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESV 755
            WW+P+    N             D +    + P    DE    R      AGGP   E+V
Sbjct: 714  WWAPS---QNTEEGALHRLLLAEDPLAVPESLPVP-GDEVLSSRLASRFPAGGPVAVETV 769

Query: 756  ---XXXXXXXXXXXXXSELATRRFDRGIDIRWRRTSYSGLIR-----MAEATGVSSEPEV 807
                            + LA  RF   +D+ WRRTSYSGL R           V + PEV
Sbjct: 770  PLRTPEDRLPAVAAPAAHLAVARFRGAVDLGWRRTSYSGLTRGVHDGPGAGHAVLAGPEV 829

Query: 808  TERDDEV-----AEVPLTEVVMSGPEQPSPMADLPSGAKFGSLVHAVLETSDPFAIDLAA 862
               DDEV           +         SPMADLP+G  FG+LVHAVLE  DP   D  A
Sbjct: 830  DVTDDEVDLDAAGATAADDDPRGWRATVSPMADLPAGTGFGTLVHAVLEGFDPAVPDRTA 889

Query: 863  ELESQIRVQSAWWXXXXXXXXXXXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFP 922
             L +  R Q                   +                  + DRL E+DFE P
Sbjct: 890  HLAALAREQ----FDPQPAEDLALALGPVLRTGLGPLAGGAALEGFPVADRLAELDFEMP 945

Query: 923  LXXXXXXXXXXXXXXLRLADVGALLRAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSV 982
            L               R+ DV  LLR HL   DP+  YAD L    LG + LRGYL+GS+
Sbjct: 946  LAGGDAAGPAGP----RVGDVAGLLRRHLPPGDPVHRYADALEDPVLGEEGLRGYLTGSI 1001

Query: 983  DAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVV 1042
            DAVLR  +G    +LVVDYKTN LG P   LTA  Y R  L EA+L + YPLQALLY V 
Sbjct: 1002 DAVLRRREG---GFLVVDYKTNRLGAPGEILTAWHYRREALDEAVLAAHYPLQALLYCVA 1058

Query: 1043 LHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPM-LDGHPAGVFSWSPPAALVTALSD 1101
            LHRFLRWRQPGYDPA HLGGVLYLF+RGMCGP+ P   DG P GV+SW PPA LV  LS+
Sbjct: 1059 LHRFLRWRQPGYDPAVHLGGVLYLFLRGMCGPEVPAGEDGVPPGVWSWRPPAGLVVDLSE 1118

Query: 1102 LLDAGR 1107
            LL AGR
Sbjct: 1119 LL-AGR 1123


>tr|C1AXR2|C1AXR2_RHOOB Tax_Id=632772 (recB)SubName:
            Full=Exodeoxyribonuclease V beta chain;
            EC=3.1.11.5;[Rhodococcus opacus]
          Length = 1103

 Score =  684 bits (1765), Expect = 0.0
 Identities = 459/1123 (40%), Positives = 578/1123 (51%), Gaps = 46/1123 (4%)

Query: 2    RPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQE 61
            R FDLLGPLP    TTVLEASAGTGKT+A+  L  R+VAEG   L  +LL+TF RAA+QE
Sbjct: 5    RGFDLLGPLP--EGTTVLEASAGTGKTYAIVGLAARFVAEGGVDLSRLLLVTFSRAATQE 62

Query: 62   LRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGF 121
            LRER R +   A     D       AD      ++ HL +  A E   R++RL  AL+ F
Sbjct: 63   LRERTRERFGSAAAALADPAAARLSAD-----LVIRHLAEAAADEVALRRRRLLQALSDF 117

Query: 122  DAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPPL 181
            DAATI TTH FCQ +L  LG+AG+ D    LVE  D+L TE++ DLYL  +GR  D  P 
Sbjct: 118  DAATIVTTHSFCQRMLDGLGIAGERDPDTVLVEAADDLTTEVIADLYLRAYGR-ADSAPF 176

Query: 182  TYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXXX 241
            T  +A   ARA + +P   L P DA  G+ A   V FA  V  E+E RK           
Sbjct: 177  TPAEATSAARAAIFDPQAVLAPEDAR-GTPAGDRVAFAEAVRAEVERRKRAVGLRDFDDL 235

Query: 242  XXXXXXXXXXXXXXXXXX--MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDP 299
                                +++R+ VV+VDEFQDTD +QW ++   F G  TL+L+GDP
Sbjct: 236  PMLLHRVLSDPEHGAAACRRVRERYGVVLVDEFQDTDPLQWDILRRTFHGNGTLVLVGDP 295

Query: 300  KQAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRD 359
            KQAIYAFRG ++++YL A ++A   + L TNWRSD  L+D L+ +  GAELG P IVV  
Sbjct: 296  KQAIYAFRGAEVLSYLDAVRSADRHQELTTNWRSDQELLDGLEYLHGGAELGHPEIVVHR 355

Query: 360  VKAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLAS 419
            V       RL GA                         +  LR  I  DLA+D+ ALL  
Sbjct: 356  VDGARPKSRLTGAAPLRLRYLPRTGAGPINKSGYP--AVGALRKRIAADLAADLVALLDG 413

Query: 420  GATF----AGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXX 475
            GAT       R ++  DIAV+V  +      H AL  AG+ +V  G   VF++       
Sbjct: 414  GATLDVGGTTRLVEPGDIAVLVRTNAQITVVHDALDRAGVPSVLAGGASVFTTPAAQHWL 473

Query: 476  XXXXXFDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAA 535
                  +QPHR   VR AA T   G TA +L   GD +   V   LRE      + G AA
Sbjct: 474  WILQAIEQPHRADRVRLAALTPLLGHTAEELDAHGDDIVAEVGAQLRELGAVFAQSGFAA 533

Query: 536  IFE-AAQLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQRED- 593
            +FE  + +G +  R+L    G+R +TDL HV QLL   +  +   L A+  WL  + +D 
Sbjct: 534  LFERLSAVGALEARLLRVAAGERALTDLRHVAQLLNSAAVEQSLGLTAVTRWLTERMKDP 593

Query: 594  RGGATERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFN--RNIQERELVLFHDGGTR 651
              G  +R+RR+DSDAAAVQI TV  SKGL++P+VYLP+A++  +  +  +L+L  D G R
Sbjct: 594  TTGGVDRSRRLDSDAAAVQIATVHASKGLEFPLVYLPYAWDAAKISKPSKLLLHDDDGRR 653

Query: 652  CLHIGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXX 711
             L +GG  SP +         E A ++ RL YVA+TRA   +V WW+PA+  P       
Sbjct: 654  ILDVGGPGSPGYADRRNRHDAEEAGEELRLLYVAVTRAMCGLVMWWAPAFTTPAAPLHRM 713

Query: 712  XXXXXXXDSVVPDRATPAKITDEDAWDRFQQWQAAGGPTVE-ESVXXXXXXXXXXXXXSE 770
                      VP +    +  D    +R   W  A   TV  E+V              E
Sbjct: 714  ILGRLPGQREVPQKVIVPE--DPIVAERLSAWGTAAPETVTVEAVGCEPIPRVGWTPERE 771

Query: 771  ----LATRRFDRGIDIRWRRTSYSGLIRMA-EATGVSSEPEVTERDDEVAEVPLTEVVMS 825
                L   RF R +D RWRRTSYS L   A +A  V SE EV E+ DE  E PL      
Sbjct: 772  PSGDLEAARFRRLLDTRWRRTSYSALTASAHDAPAVGSEAEVEEKTDEPDEPPLHAPDGV 831

Query: 826  GPEQPSPMADLPSGAKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWXXXXXXXXXX 885
                PS M +LP GA FG+LVHAV E  D  A DL  E+    R   A            
Sbjct: 832  TAGVPSTMNELPGGATFGTLVHAVFEIVDTAAPDLDDEVLRCCRDVIASTLSDVDPAQLA 891

Query: 886  XXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGA 945
                 +                +   D L E+DFE PL              + L  VG 
Sbjct: 892  TALVPVL-RTPLGAGAERTLADLAPADLLAELDFELPL-----AGGDTPSLTVMLDGVGR 945

Query: 946  LLRAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNW 1005
            LLR HL  +DPL  YAD +    L    LRGYL+GS+DAVLR+   PG RY+VVDYKTN 
Sbjct: 946  LLRTHLPENDPLRSYADAV--QTLEPTPLRGYLTGSIDAVLRL---PGPRYVVVDYKTNR 1000

Query: 1006 LGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLY 1065
            L   D  LT A Y R  +   ML + YPLQALLY+V LHR+LRWRQPGYDP  HLGGV Y
Sbjct: 1001 LAQGD--LTTAHYTRGSMAAEMLRAHYPLQALLYSVALHRYLRWRQPGYDPGLHLGGVQY 1058

Query: 1066 LFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDLLDAGRA 1108
            LFVRGM GPDTP       GVF W+PPAAL+T LSDLL    A
Sbjct: 1059 LFVRGMVGPDTP----PGCGVFDWAPPAALITELSDLLSGSAA 1097


>tr|Q0SFN8|Q0SFN8_RHOSR Tax_Id=101510 SubName:
            Full=Exodeoxyribonuclease V beta subunit;
            EC=3.1.11.5;[Rhodococcus sp.]
          Length = 1103

 Score =  675 bits (1741), Expect = 0.0
 Identities = 454/1118 (40%), Positives = 574/1118 (51%), Gaps = 46/1118 (4%)

Query: 2    RPFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQE 61
            R FDLLGPLP    TTVLEASAGTGKT+A+  L  R+VAEG   L ++LL+TF RAA+QE
Sbjct: 5    RGFDLLGPLP--EGTTVLEASAGTGKTYAIVGLAARFVAEGGVDLSQLLLVTFSRAATQE 62

Query: 62   LRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGF 121
            LRER R +   A     D       AD     QL+ HL +    E   R++RL  AL+ F
Sbjct: 63   LRERTRERFGSAAAALADPAAARLSAD-----QLIRHLAEADTGEVTLRRRRLLQALSDF 117

Query: 122  DAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPPL 181
            DAATI TTH FCQ +L  LG+AG+ D    LVE  D+L TE++ DLYL  + R  +  P 
Sbjct: 118  DAATIVTTHSFCQRMLDGLGIAGERDPDTVLVEAADDLTTEVIADLYLRAYSRV-ESAPF 176

Query: 182  TYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXXX 241
            T  +A   ARA + +P   L P D   G+ A   V FA  V  E+E RK           
Sbjct: 177  TPAEATAAARAAIFDPQAVLAPEDTR-GTPAGDRVAFAEAVRAEVERRKRAVGLRDFDDL 235

Query: 242  XXXXXXXXXXXXXXXXXX--MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDP 299
                                +++R+ VV+VDEFQDTD +QW ++   F G  T++L+GDP
Sbjct: 236  PMLLHRVLSDPEHGAAACRRVRERYGVVLVDEFQDTDPLQWDILRRTFHGSGTVVLVGDP 295

Query: 300  KQAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRD 359
            KQAIYAFRG ++++YL A ++A   + L TNWRSD  L+D L+ +  GA LG P IVV  
Sbjct: 296  KQAIYAFRGAEVLSYLDAVRSADRHQELTTNWRSDQELLDGLEYLHGGAALGHPEIVVHR 355

Query: 360  VKAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLAS 419
            V       RL GA                         +  LR  I  DLA+D+ ALL  
Sbjct: 356  VDGARPKSRLTGAAPLRLRYLPRTGAGPINKSGYP--AVGPLRKRIAADLAADVVALLDG 413

Query: 420  GATF----AGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXX 475
            GAT       R ++  DIAV+V  +      H AL  AG+ +V  G   VF++       
Sbjct: 414  GATLDVGGDTRLVEPGDIAVLVRTNAQITLVHDALDRAGVPSVLAGGASVFTTPAAQHWL 473

Query: 476  XXXXXFDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAA 535
                  +QPHR   VR AA T   G TA +L   GD +   V   LRE      + G AA
Sbjct: 474  WILQAIEQPHRSDRVRLAALTPLLGHTAEELDARGDDIVAEVGGQLRELGAVFAQSGFAA 533

Query: 536  IFE-AAQLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQRED- 593
            +FE  + +  +  R+L    G+R +TDL HV QLL   +  +   L A+  WL  + +D 
Sbjct: 534  LFERLSAVAALEARLLRVAAGERALTDLRHVAQLLNGAAVEQSLGLTAVTRWLTERMKDP 593

Query: 594  RGGATERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFN--RNIQERELVLFHDGGTR 651
              G  +R+RR+DSDAAAVQI TV  SKGL++P+VYLP+A++  +  +  +L+L  D G R
Sbjct: 594  SSGGVDRSRRLDSDAAAVQIATVHASKGLEFPLVYLPYAWDAAKISKPSKLLLHDDDGRR 653

Query: 652  CLHIGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXX 711
             L +GG  SP +         E A ++ RL YVA+TRA   +V WW+PA+          
Sbjct: 654  ILDVGGPGSPGYADRRNRHDAEEAGEELRLLYVAVTRAMCGLVVWWAPAFTTAGAPLHRM 713

Query: 712  XXXXXXXDSVVPDRATPAKITDEDAWDRFQQWQAAGGPTVE-ESVXXXXXXXXXXXXXSE 770
                      VP + T  +  D    +R   W  A   TV  E+V              E
Sbjct: 714  ILGRQPGQREVPQKVTVPE--DPVVAERLSAWGTAAPETVTVEAVGSDPIVRVGWTPQRE 771

Query: 771  ----LATRRFDRGIDIRWRRTSYSGLIRMA-EATGVSSEPEVTERDDEVAEVPLTEVVMS 825
                L   RF R +D RWRRTSYS L   A +A  V SE EV E+ DE AE PL      
Sbjct: 772  PRGDLEAARFRRLLDTRWRRTSYSALTASAHDAPAVGSEAEVEEKTDEPAEPPLQAPADI 831

Query: 826  GPEQPSPMADLPSGAKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWXXXXXXXXXX 885
                 S M +LP GA FG+LVHAV E  D  A DL AE+    R   A            
Sbjct: 832  TSGVASTMNELPGGATFGTLVHAVFEIVDTAAPDLDAEVLRCCRDVIASTLSDIDPAQLA 891

Query: 886  XXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGA 945
                 +                I   D L E+DFE PL              + L  VG 
Sbjct: 892  TALLPVL-RTPLGAGAETTLADIAPADLLAELDFELPL-----AGGDTPSLTVMLDGVGE 945

Query: 946  LLRAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNW 1005
            LLR HL   DPL  YAD +    L    LRGYL+GS+DAVLR+   PG RY+VVDYKTN 
Sbjct: 946  LLRTHLPVDDPLRSYADAV--QTLEPTPLRGYLTGSIDAVLRL---PGPRYVVVDYKTNR 1000

Query: 1006 LGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLY 1065
            L   D  LT A Y R  +   M+ + YPLQALLY+V LHR+LRWRQP YDPA HLGGV Y
Sbjct: 1001 LAQGD--LTTAHYTRESMAAEMVRAHYPLQALLYSVALHRYLRWRQPNYDPAVHLGGVQY 1058

Query: 1066 LFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDLL 1103
            LFVRGM GPDTP       GVF W+PPAAL+T LSDLL
Sbjct: 1059 LFVRGMVGPDTP----PGCGVFDWAPPAALITELSDLL 1092


>tr|Q5YWP8|Q5YWP8_NOCFA Tax_Id=37329 (recB)SubName: Full=Putative RecB
            protein;[Nocardia farcinica]
          Length = 1113

 Score =  668 bits (1724), Expect = 0.0
 Identities = 458/1128 (40%), Positives = 581/1128 (51%), Gaps = 66/1128 (5%)

Query: 4    FDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELR 63
            FD  GPLP    TTVLEASAGTGKT A+  L  RYVAE   R+ E+LL+TF RAA+QELR
Sbjct: 17   FDPCGPLP--RGTTVLEASAGTGKTHAIVGLAVRYVAEAGVRIAELLLVTFSRAATQELR 74

Query: 64   ERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFDA 123
            ER R + V       D     D A  AGD +L+AHL      E   R+ RL  AL+ FDA
Sbjct: 75   ERARDRFVAVAAALADP----DSARAAGD-ELIAHLAAADDTEVALRRTRLLTALSDFDA 129

Query: 124  ATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPPLTY 183
             TIATTH FCQ +L  LG+AG+ D    LVE +D+LV  + DDLYL  + R +  PP   
Sbjct: 130  GTIATTHSFCQRMLDELGLAGERDTAARLVETVDDLVVTVADDLYLHRYARAQ--PPFGR 187

Query: 184  RDALRIARAVVANPSTQLRPLDAP-PGSRAAICVGFAHHVLEELETRKXXXXXXXXXXXX 242
            ++A  +A A V +   +L P D   PG R A    FA  V  E E RK            
Sbjct: 188  KEAHTLALAAVRDRHARLVPDDEDEPGERVA----FAAAVRAETERRKRLAGLRDFDDLL 243

Query: 243  XXXXXXXXXXXXXXXXX--MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                               ++ R+ V +VDEFQDTD +QW ++  +F G  TL+L+GDPK
Sbjct: 244  VLLHDVLADPDHGEGACARVRARYRVALVDEFQDTDPLQWDILRRSFHGHTTLVLVGDPK 303

Query: 301  QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
            QAIYAFRG ++++YL A   A  ++ L  NWRSD+ L+  L  +  GA LG P I V  V
Sbjct: 304  QAIYAFRGAEVLSYLDAVAHADSRKELTRNWRSDAGLLRALDHLQGGAALGHPEISVYPV 363

Query: 361  KAHHQGHRLAG-APHNDXXXXXXXXXXXXXXXXIQNLP-IDILRDHIGRDLASDIGALLA 418
            +A     RL+G A                        P +   R  +  DLA+D+  LL 
Sbjct: 364  EATRPWSRLSGPAELITPLRLRCLPRTGAGPLNKSGFPAVGRQRAKVADDLAADLVRLLE 423

Query: 419  SGATFAG--------RALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXX 470
            SGA            R + A DIAV+V           AL   G+ +V  G T VF +  
Sbjct: 424  SGAEVTDGHGAGAVRRPVAAGDIAVLVRTRTQIDVVRAALDRVGVASVLAGGTSVFGTPS 483

Query: 471  XXXXXXXXXXFDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARE 530
                       +QPHR   VR AAAT   G    ++ RGG  L  RV+  LR+ A     
Sbjct: 484  ATHWLWVLRALEQPHRSDRVRLAAATPILGYPPAEIDRGGADLVGRVSAQLRDAARLFAR 543

Query: 531  RGVAAIFE-AAQLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRG 589
             G AA++E  A    ++ R+L  + G+R +TDL H+ QLL +V+  +   L AL  WL  
Sbjct: 544  AGFAAVYERLAAQARLAPRLLGIENGERTLTDLRHIAQLLDQVALADGLGLTALTRWLAD 603

Query: 590  QRED--RGGATERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFN--RNIQERELVLF 645
            +  D   G   +R+RR+D DAAAVQI TV  SKGL++P+VYLPFA++  +N     L+  
Sbjct: 604  RVRDPASGAVADRSRRLDRDAAAVQIATVHASKGLEFPIVYLPFAWDNAKNPYPGSLLFH 663

Query: 646  HDGGTRCLHIGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPN 705
             D GTR L +GG D+P +   +     E A ++ RL YVA+TRA+ QVVAWW+PA+    
Sbjct: 664  DDDGTRVLDVGGPDAPGYAQRKLRCEAEEAGEELRLLYVALTRAKCQVVAWWAPAHSTAA 723

Query: 706  XXXXXXXXXXXXXDSVVPDRA-TPAKITDEDAWDRFQQWQAAGG-----PTVEESVXXXX 759
                            VPDRA  PA   D  A   F  W    G       V+ +     
Sbjct: 724  APLHRMILGRPEGGPHVPDRAPVPA---DTAAVPMFTAWAEPAGAAISVTAVDTAEAVEI 780

Query: 760  XXXXXXXXXSELATRRFDRGIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVP- 818
                      ELA  RFDR +D+ WRRTSYS L   A      +EPE      +  E P 
Sbjct: 781  RRVRVEPVTGELAAARFDRSLDLLWRRTSYSALTAGAHDLVTDAEPEDVRGPGDEPETPA 840

Query: 819  LTEVVMSGPEQPSPMADLPSGAKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAWWXXX 878
            L     +    PS M DLP GA+FG+LVH VLE  D  A DLAAE+ ++ R  +A     
Sbjct: 841  LLTDEPAATAAPSLMNDLPYGAEFGTLVHGVLERIDTDAPDLAAEVRTRCREAAAELLAD 900

Query: 879  XXXXXXXXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXL 938
                        +                I   DRL E++FE PL               
Sbjct: 901  LDHGVLATALLAV----LRTPLGFGTLADIAARDRLSELEFELPL-------GGGDTPAA 949

Query: 939  RLADVGA---LLRAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQR 995
            R A +GA   L+RAHL  +D L+ Y D L+G  L   +LRGYL+GS+DAVLR+   PG +
Sbjct: 950  RAATLGAIAELVRAHLGPADDLSGYPDLLAG--LDDVTLRGYLTGSIDAVLRL---PGPK 1004

Query: 996  YLVVDYKTNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYD 1055
            ++VVDYKTN LG  D  LT   Y R R+   ML S YPLQALLY+V LHR+LRWR PGYD
Sbjct: 1005 FVVVDYKTNRLGTGD--LTVGHYTRERMAAEMLRSHYPLQALLYSVALHRYLRWRLPGYD 1062

Query: 1056 PARHLGGVLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDLL 1103
            PARHLGG  YLFVRGM GP+TP   GH  GVF W PP  LV ALSDLL
Sbjct: 1063 PARHLGGCRYLFVRGMIGPETP--PGH--GVFDWDPPVPLVLALSDLL 1106


>tr|C3JUW9|C3JUW9_RHOER Tax_Id=596309 (recB)SubName:
            Full=Exodeoxyribonuclease V, beta subunit;
            EC=3.1.11.5;[Rhodococcus erythropolis SK121]
          Length = 1105

 Score =  665 bits (1717), Expect = 0.0
 Identities = 448/1132 (39%), Positives = 584/1132 (51%), Gaps = 75/1132 (6%)

Query: 4    FDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELR 63
            FDLLGPLP    TTVLEASAGTGKT+A+  L TR VAEG A + ++LL+TF RAA+QELR
Sbjct: 3    FDLLGPLPT--GTTVLEASAGTGKTYAIVGLATRCVAEGLADISQVLLVTFSRAATQELR 60

Query: 64   ERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFDA 123
            ER R +         D      +A    D+ L+A+L      E   R++RL  ALA FDA
Sbjct: 61   ERARERFAGVSAALVDP-----EAARRSDDDLVAYLATADDEEIGVRRRRLLRALAEFDA 115

Query: 124  ATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPPLTY 183
             TI TTH FCQ +L  LG+AG+ +   T VE +D+L++E+V DLYL  + R    PP + 
Sbjct: 116  GTITTTHSFCQRMLDGLGIAGEREPDTTFVESVDDLISEVVSDLYLSRYSRTDSSPPFST 175

Query: 184  RDALRIARAVVANPSTQLRP---LDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
            +DAL IAR+ V +    L P    +  PG R    V FA     E+E RK          
Sbjct: 176  KDALAIARSAVGDGQAILEPDGEEETAPGQR----VLFAAAARLEVERRKRTKGIRDFND 231

Query: 241  XXXXXXXXXXXXXXXXXXX--MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGD 298
                                 +++++ VV++DEFQDTD +QW ++  AF G  TL+L+GD
Sbjct: 232  LLTLLHGVLTDPEYGPVACRRVREKFKVVLIDEFQDTDPLQWDILRLAFHGHTTLVLVGD 291

Query: 299  PKQAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVR 358
            PKQAIYAFRG ++++YL A   A   + L TNWRSD  L+  L+ +  GA LG+  IV  
Sbjct: 292  PKQAIYAFRGAEVLSYLDAVDQADAHQELTTNWRSDPGLLAALEHLYGGAALGNEGIVAH 351

Query: 359  DVKAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLA 418
             V+A H+  RL G                          +  LR  +  D+A+D+ ALL 
Sbjct: 352  PVEASHKKSRLFGPVPMRVRHLPRTGAGPLNRSGFP--AVGRLRSRVADDVAADVVALLG 409

Query: 419  SGATFA----GRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXX 474
              A  A     R ++  D+AV+V  HK       AL   G+ +V TG + VF++      
Sbjct: 410  GDARLAVDGDPRPVEPGDVAVLVRTHKHVAMIRDALDAVGVPSVLTGGSSVFATPSATQW 469

Query: 475  XXXXXXFDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVA 534
                   +QPHR   VR  A +  FG+T+ +L + GD +   +A  LR ++      G A
Sbjct: 470  LWLLQAIEQPHRSDRVRLTALSPIFGRTSEELDKDGDNVVAELAGQLRSYSGLFARVGFA 529

Query: 535  AIFEAAQL-GGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQRED 593
            A+FE       +  RVL+   G+R  TDL HV QLL +V+  E + L AL  WL  + +D
Sbjct: 530  AVFERISAETNLEKRVLAAPSGERDFTDLRHVAQLLGRVATEEAFGLSALVRWLSDRIKD 589

Query: 594  --RGGATERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFA------FNRNIQERELVLF 645
               G AT+R+RR+DSDAAAVQI TV  +KGL++P+VY+PF+      FN   Q     L 
Sbjct: 590  PTSGSATDRSRRLDSDAAAVQIATVHATKGLEFPIVYVPFSWESVGGFNSPTQ-----LL 644

Query: 646  HD-GGTRCLHIGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEP 704
            HD  G R L +GG++ P +   + +   E A ++ RL YVA+TRAQ Q+V WW+P+Y   
Sbjct: 645  HDPEGRRILDVGGQEGPGYNARKTVAEAEEAGEELRLLYVALTRAQCQLVLWWAPSYGTS 704

Query: 705  NXXXXXXXXXXXXXDSVVPDRATPAKIT----DEDAWDRFQQWQAAGGPTVE-ESV---- 755
                              P  A PA++     D     R   W AA    +  E V    
Sbjct: 705  RSPLHRLMLGR------TPGIAEPARVVKVLDDGTTAARLATWPAAASDVISVEPVGPHP 758

Query: 756  XXXXXXXXXXXXXSELATRRFDRGIDIRWRRTSYSGLIRMAE--ATGVSSEPEVTERDDE 813
                         +ELA  RFDR +D  WRRTSYS L   A    T   SE E  E+DDE
Sbjct: 759  PSPVHWSRAAADVTELAAARFDRDLDTLWRRTSYSALTAGAHHAVTTTGSEVEDPEKDDE 818

Query: 814  VAE-VPLTEVVMSGPEQ-PSPMADLPSGAKFGSLVHAVLETSDPFAIDLAAELESQIRVQ 871
              + V L  +  S  E  PSPM  LP+GA FG+LVH VLE  D  A DL AEL     ++
Sbjct: 819  PEDSVDLGSITPSPLEAFPSPMNGLPAGAAFGTLVHEVLEVVDTAAADLRAEL----GMR 874

Query: 872  SAWWXXXXXXXXXXXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXX 931
             A                                  I   DRL E+DFE PL        
Sbjct: 875  CAEAVSVRAAEVDSEALADALYLVMQTPLGFGTLATIAPKDRLPELDFELPL----AGGD 930

Query: 932  XXXXXXLRLADVGALLRAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDG 991
                  + L  V  LLR HL A D LA YAD L  D +    +RG+L+GS+DAVLRI   
Sbjct: 931  DPVSMSVTLRGVSELLRRHLPADDILASYADYL--DRVETSPMRGFLTGSIDAVLRI--- 985

Query: 992  PGQRYLVVDYKTNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQ 1051
            PG  +++VDYKTN +G  D  LTAA+Y R  +   M+ S YPLQALLY+V LHR+LRWR 
Sbjct: 986  PGPSFVIVDYKTNRIGRGD--LTAANYTRELMATEMMRSHYPLQALLYSVALHRYLRWRL 1043

Query: 1052 PGYDPARHLGGVLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDLL 1103
            P YDP RHLGG  Y FVRGM GPD+P       GVF W PPA L   LSDLL
Sbjct: 1044 PDYDPHRHLGGAQYQFVRGMLGPDSP----PECGVFEWKPPAQLTVELSDLL 1091


>tr|C0ZQ88|C0ZQ88_RHOE4 Tax_Id=234621 (recB)SubName:
            Full=Exodeoxyribonuclease V beta chain;
            EC=3.1.11.5;[Rhodococcus erythropolis]
          Length = 1105

 Score =  665 bits (1716), Expect = 0.0
 Identities = 449/1132 (39%), Positives = 580/1132 (51%), Gaps = 75/1132 (6%)

Query: 4    FDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELR 63
            FDLLGPLP    TTVLEASAGTGKT+A+  L TR VAEG A + ++LL+TF RAA+QELR
Sbjct: 3    FDLLGPLPT--GTTVLEASAGTGKTYAIVGLATRCVAEGLADISQVLLVTFSRAATQELR 60

Query: 64   ERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFDA 123
            ER R +         D      +A    D+ L+A+L      E   R++RL  ALA FDA
Sbjct: 61   ERARERFAGVSAALVDP-----EAARRSDDDLVAYLATADDEEIGVRRRRLLRALAEFDA 115

Query: 124  ATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPPLTY 183
             TI TTH FCQ +L  LG+AG+ +   T VE +D+L++E+V DLYL  + R    PP + 
Sbjct: 116  GTITTTHSFCQRMLDGLGIAGEREPDTTFVESVDDLISEVVSDLYLSRYSRTDSSPPFST 175

Query: 184  RDALRIARAVVANPSTQLRP---LDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
            +DAL IAR  V +    L P    +  PG R    V FA     E+E RK          
Sbjct: 176  KDALAIARIAVGDGQAILEPDGEEETAPGQR----VLFAAAARLEVERRKRTKGIRDFND 231

Query: 241  XXXXXXXXXXXXXXXXXXX--MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGD 298
                                 +++++ VV++DEFQDTD +QW ++  AF G  TL+L+GD
Sbjct: 232  LLTLLHGVLTDPEYGPVACRRVREKFKVVLIDEFQDTDPLQWDILRLAFHGHTTLVLVGD 291

Query: 299  PKQAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVR 358
            PKQAIYAFRG ++++YL A   A   + L TNWRSD  L+  L+ +  GA LG+  IV  
Sbjct: 292  PKQAIYAFRGAEVLSYLDAVDQADAHQELTTNWRSDPGLLAALEHLYGGAALGNEGIVAH 351

Query: 359  DVKAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLA 418
             V+A H+  RL+G                          +  LR  +  D+A+D+  LL 
Sbjct: 352  PVEASHKKSRLSGPVPMRVRHLPRTGAGPLNRSGFP--AVGRLRSRVADDVAADVVGLLG 409

Query: 419  SGATFA----GRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXX 474
            S A  A     R ++  D+AV+V  HK       AL   G+ +V TG + VF++      
Sbjct: 410  SDARLAVDGDPRPVEPGDVAVLVRTHKQVAMIRDALDAVGVPSVLTGGSSVFATPSATQW 469

Query: 475  XXXXXXFDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVA 534
                   +QPHR   VR  A +  FG+TA +L   GD +   +A  LR ++      G A
Sbjct: 470  LWLLQAIEQPHRSDRVRLTALSPIFGRTAEELDVDGDNVVAELAGQLRSYSGLFARVGFA 529

Query: 535  AIFEAAQL-GGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQRED 593
            A+FE       +  RVL+   G+R  TDL HV QLL +V+  E + L AL  WL  + +D
Sbjct: 530  AVFERISAETNLEKRVLAAPSGERDFTDLRHVAQLLGRVATEEAFGLSALVRWLSDRIKD 589

Query: 594  --RGGATERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFA------FNRNIQERELVLF 645
               G AT+R+RR+DSDAAAVQI TV  +KGL++P+VY+PF+      FN   Q     L 
Sbjct: 590  PTSGSATDRSRRLDSDAAAVQIATVHATKGLEFPIVYVPFSWESVGGFNSPTQ-----LL 644

Query: 646  HD-GGTRCLHIGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEP 704
            HD  G R L +GG++ P     + +   E A ++ RL YVA+TRAQ Q+V WW+P+Y   
Sbjct: 645  HDPDGRRILDVGGQEGPGHNARKTVAEAEEAGEELRLLYVALTRAQCQLVLWWAPSYGTS 704

Query: 705  NXXXXXXXXXXXXXDSVVPDRATPAKIT----DEDAWDRFQQWQAAGGPTVE-ESV---- 755
                              P  A PA++     D     R   W AA    +  E V    
Sbjct: 705  RSPLHRLMLGR------TPGIAEPARVVKVLDDGTTAARLATWPAAASDVISVEPVGPHP 758

Query: 756  XXXXXXXXXXXXXSELATRRFDRGIDIRWRRTSYSGLIRMAE--ATGVSSEPEVTERDDE 813
                         +ELA  RFDR +D  WRRTSYS L   A    T   SE E  E+DDE
Sbjct: 759  PSPVQWSGAAANVTELAAARFDRDLDTLWRRTSYSALTAGAHHAVTSTDSEVEDPEKDDE 818

Query: 814  VAEVPLTEVVMSGPEQ--PSPMADLPSGAKFGSLVHAVLETSDPFAIDLAAELESQIRVQ 871
              +      V   P +  PSPM  LP+GA FG+LVH VLE  D  A DL AEL   IR  
Sbjct: 819  PEDSVDFGTVTPSPLEALPSPMNGLPAGAAFGTLVHEVLEVVDTAASDLRAEL--GIRCA 876

Query: 872  SAWWXXXXXXXXXXXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXX 931
             A                 +                I   DRL E+DFE PL        
Sbjct: 877  EAVSVRAAEVDSEALADALL--LVMQTPLGFGTLATIAPKDRLPELDFELPL----AGGD 930

Query: 932  XXXXXXLRLADVGALLRAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDG 991
                  + L  V  LLR HL   D LA YAD L  D +    +RG+L+GS+DAVLRI   
Sbjct: 931  DPVSMSVTLRGVSELLRRHLPPDDILASYADHL--DRVETSPMRGFLTGSIDAVLRI--- 985

Query: 992  PGQRYLVVDYKTNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQ 1051
            PG  +++VDYKTN LG  D  LTAA+Y R  +   M+ S YPLQALLY+V LHR+LRWR 
Sbjct: 986  PGPSFVIVDYKTNRLGRGD--LTAANYTRELMATEMMRSHYPLQALLYSVALHRYLRWRL 1043

Query: 1052 PGYDPARHLGGVLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDLL 1103
            P YDP RHLGG  Y FVRGM GPD+P       GVF W PPA L   LSDLL
Sbjct: 1044 PDYDPHRHLGGAQYQFVRGMLGPDSP----PECGVFEWKPPAQLTVELSDLL 1091


>tr|C2AQM6|C2AQM6_TSUPA Tax_Id=521096 SubName: Full=ATP-dependent
            exonuclease V beta subunit, helicase and exonuclease
            domain-containing;[Tsukamurella paurometabola DSM 20162]
          Length = 1110

 Score =  628 bits (1619), Expect = e-177
 Identities = 430/1128 (38%), Positives = 563/1128 (49%), Gaps = 51/1128 (4%)

Query: 3    PFDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQEL 62
            PF+L G LPA  +TTVLEASAGTGKT+A+  L+TRYVAEG A L   LLITF RAA+QEL
Sbjct: 12   PFELTGALPAGATTTVLEASAGTGKTYAIVGLLTRYVAEGLADLGSTLLITFSRAATQEL 71

Query: 63   RERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFD 122
            RER R ++V A     D     + A   GD +L+ HL   +  E   R +RL  AL+ FD
Sbjct: 72   RERARARLVAAEVALRDP----ETARVCGD-ELIRHLAAASPEEVRVRHRRLVAALSDFD 126

Query: 123  AATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPPLT 182
            AATI TTH FCQ +L +LG+AGD + GV  VED+ +LV E+ +D+YL  F   R  PP  
Sbjct: 127  AATITTTHGFCQRMLDALGMAGDLEPGVQFVEDIGDLVQEVAEDVYLGMFA-GRPHPPFP 185

Query: 183  YRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXXXX 242
               AL  AR VVANP   + P D  PG+     V +A  V  E+E RK            
Sbjct: 186  LATALLYARTVVANPRAAVTPRDGEPGTDVQARVRYAEAVRREVERRKRLGRLRDFDDLQ 245

Query: 243  XXXXXXXXXXXXXXXXXMQQR--WPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPK 300
                              + R  + VV+VDEFQDTD VQW ++ +AF G  TL+L+GDPK
Sbjct: 246  GLLREALVDEVHGEAACSRLRELYSVVLVDEFQDTDPVQWDILHAAFHGHRTLVLVGDPK 305

Query: 301  QAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDV 360
            QAIYAFRG ++ +YL A++ A   + L  N RSD  LV  LQ +     LGD  IVV  V
Sbjct: 306  QAIYAFRGAEVYSYLEASKAATTHQALDVNRRSDGPLVTALQHLYGDVALGDTQIVVGPV 365

Query: 361  KAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG 420
             A     RLAG P                   I  +P   +R  + RD+ASDI   L +G
Sbjct: 366  SAARTTPRLAGRPLR-LRYLGSNGVGPKTQYGIPRVP--GVRKAVLRDVASDIVRALDAG 422

Query: 421  ATF----AGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXX 476
                     R ++  DIAV+V K++        L   G+ AV  G   VF++        
Sbjct: 423  EELDDGGEPRTVEPRDIAVLVRKNEHIAELQSLLQGLGVAAVAAGGASVFTTAAATDWLR 482

Query: 477  XXXXFDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAAI 536
                 +   R    R AA T  F  TA DL   GD L   ++  LR  A      G AA+
Sbjct: 483  LLQALENAGRADRARLAALTPLFEFTARDLDERGDELVSEISGRLRTLAGVFARSGFAAM 542

Query: 537  FEAAQLGGMSD-RVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQRED-- 593
            F+    G   D R+L    G+R +TDL HV +L+Q  +      L A   WL  +  D  
Sbjct: 543  FDVLAAGSRFDARLLGRIGGERTLTDLRHVAELVQHATVTLGLGLGAATRWLAERIADPG 602

Query: 594  RGGATERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNR--NIQERELVLFHDGGTR 651
             GG  +  RR+ +D  AVQ+MTV  SKGLQ+P+VYLPFA++      +R+  +FH+ G R
Sbjct: 603  LGGTADPARRLATDTQAVQLMTVHASKGLQFPIVYLPFAWDSFGGFGDRDTFIFHENGER 662

Query: 652  CLHIGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXX 711
             + +GGKD+  +     +   E A ++ RL YV  TRAQS++V WW+P+           
Sbjct: 663  LVDVGGKDAHGYEARLAISRDEDAAEELRLLYVGATRAQSRLVLWWAPSATTKGSPLHRL 722

Query: 712  XXXXXXXDSVVPDRATPAKITDEDAWDRFQQWQA-----AGGPTVEESVXXXXXXXXXXX 766
                     V   +A   +  D++A  R ++W A          V+ +            
Sbjct: 723  LFSEVGGGRVPAGQAPIPR--DDEAGARLREWAAPVESSVSIEAVDPAAPAPEQWRPPFA 780

Query: 767  XXSELATRRFDRGIDIRWRRTSYSGLIRMA-----EATGVSSEPEVTERDDEVAEVPLTE 821
                L   R  R ID  WRRTSYS L+  A      A    SEP+V +R DE  E P   
Sbjct: 781  GFPSLELGRATRRIDPSWRRTSYSALVADAAHGPLAAPDTGSEPDVEDRADEPVEEPADS 840

Query: 822  VVMSGPEQPSPMADLPSGAKFGSLVHAVLETSDPFAIDLAAELESQIRVQSAW-WXXXXX 880
               +    PS M  L  G  FG+LVH +LE  D  A D+AAE+ ++ R  + +       
Sbjct: 841  ATTAPDAPPSLMNGLSGGTVFGNLVHEILEHVDTGAPDIAAEVLARCRAAAEFGTTADDP 900

Query: 881  XXXXXXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRL 940
                      +H              ++   D L EMDFE PL                L
Sbjct: 901  ADVAAALTAVLHTPLGTGELSTLTLAEVAPADHLAEMDFELPL---------ADTGSATL 951

Query: 941  ADVGALLRAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVD 1000
              +  LL  HL   DPLAPYA RL    + G +LRG+L+GS+D+VLR+  G   R+++VD
Sbjct: 952  GTIADLLERHLPDGDPLAPYASRLR--EVPGAALRGFLTGSIDSVLRVRTGAADRFVIVD 1009

Query: 1001 YKTNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHL 1060
            YKTN     D  L+ ADY   R+   M+ S+Y LQALLY+V LHRFL W+   Y P RHL
Sbjct: 1010 YKTNRFARGD--LSTADYTPDRMAGEMMGSNYVLQALLYSVALHRFLSWKLTDYQPERHL 1067

Query: 1061 GGVLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDLLDAGRA 1108
            G V Y FVRGM GP TP       GVF W PPA L+ A+SD L AGR+
Sbjct: 1068 GVVQYHFVRGMVGPATP----PGCGVFEWYPPAELIVAVSDAL-AGRS 1110


>tr|D0L8X3|D0L8X3_GORB4 Tax_Id=526226 SubName:
            Full=Exodeoxyribonuclease V; EC=3.1.11.5;[Gordonia
            bronchialis]
          Length = 1134

 Score =  565 bits (1456), Expect = e-158
 Identities = 417/1160 (35%), Positives = 556/1160 (47%), Gaps = 101/1160 (8%)

Query: 4    FDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELR 63
            FD+   LPA+  TTVLEASAGTGKT+A+ +L  RY+AEG   +  MLL+TF RAA+ ELR
Sbjct: 11   FDIAEDLPAQ--TTVLEASAGTGKTYAIVSLAARYLAEG-VPISGMLLVTFSRAATAELR 67

Query: 64   ERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFDA 123
            ER+R ++   V V  D  + +  AD     QL   L  GTA +   R+  L  AL+ FDA
Sbjct: 68   ERMRERVHGLVGVLADPASAAQSAD-----QLHRLLAAGTAEDVARRRAHLVRALSDFDA 122

Query: 124  ATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPPLTY 183
            +TIATTH FC  +L++LG  G+ +    +VE++DEL  E+  DLYL  F    + P  + 
Sbjct: 123  STIATTHTFCNRMLEALGFLGEREMVYRIVEEVDELTDEVALDLYLRGFSTS-EAPDFSL 181

Query: 184  RDALRIARAVVANPSTQLRPLDAP------PGSRAAICVGFAHHVLEELETRKXXXXXXX 237
             +A RIAR  V   +  L P  A       PG  AA  V FA  V + +E RK       
Sbjct: 182  AEAQRIARDAVRQAAVALAPEAAELQDAGEPGRVAARRVRFAARVRQIVEARKRTSRLRT 241

Query: 238  XXXXXXXXXXXXXXXXXXXXXXMQQR--WPVVMVDEFQDTDAVQWQVIDSAFSGRCTLIL 295
                                   + R  + V +VDEFQDTD +QW ++   F G   L+L
Sbjct: 242  YDDLQTILHRIITDPDVGEAACRRIRSTFAVALVDEFQDTDPLQWDIVRRCFHGHRRLVL 301

Query: 296  IGDPKQAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAI 355
            +GDPKQ+IY FRG ++++YL A ++A   R L TN RSD  LV  L  +  GA LG P I
Sbjct: 302  VGDPKQSIYGFRGAEVLSYLSAVRSADTLRALDTNRRSDGDLVASLWTLYGGATLGHPGI 361

Query: 356  VVRDVKAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGA 415
            VV  V A H G RL GA                    + + P    R  I  D+A  I +
Sbjct: 362  VVHPVGAAHAGSRLDGAVPMQVRAFMRTDFNRLNSLGVPSAP--DARARITTDVADHISS 419

Query: 416  LLASGATF----AGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXX 471
             L++G T     A R ++  DIAV+V ++K       AL   G++AV     +VF +   
Sbjct: 420  ALSAGMTIVVDGARRPVEPGDIAVLVRQNKTIEPLQTALAARGVNAVIGSGVNVFETSAA 479

Query: 472  XXXXXXXXXFDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARER 531
                      +QP RP  VR AA T   G T   LA   +  T  +            E 
Sbjct: 480  QHWLWVLRAVEQPSRPDRVRLAALTPLLGWTPERLAVQAETGTAELGAGFAALGQVFGEC 539

Query: 532  GVAAIFEAAQL-GGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQ 590
            G AA+ +       ++ RVL+ + G+R +TDL  ++ L  K        +  L +WL  +
Sbjct: 540  GFAAMAQRLMAQENVAARVLAMRGGERLLTDLLQISALCNKQVVESGEGISGLVEWLADR 599

Query: 591  RED---RGGATERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRN-IQERELVLFH 646
              D   R    +++RR++ D  AVQIMTV  SKGLQ+P+VY+PF ++   I E   + FH
Sbjct: 600  IADSSRRQRHEDQSRRLERDTEAVQIMTVHASKGLQFPIVYVPFGWDGTWIDEEGDLTFH 659

Query: 647  DG-GTRCLHIGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPN 705
            D  GTR L + G  +P  GT     A+E A +D RL YVA+TRAQSQVV WW+P  + P 
Sbjct: 660  DDEGTRLLDVAGPGAPGRGTRRARYAEEVAGEDLRLLYVALTRAQSQVVTWWAPTANTPT 719

Query: 706  XXXXXXXXXXXXXDSVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXX 765
                                     + +    D    W  A    V + V          
Sbjct: 720  GPLHRLIF------------GRQRALAERSGTDPQAPWTVAKSVDVPDDVECVTVLRQLA 767

Query: 766  XXXSE--------------------------LATRRFDRGIDIRWRRTSYSGLIRMAEAT 799
               S                           L+   FDR ID +WRRTSYS +I  A A 
Sbjct: 768  ERDSRIEVSPAGRLPTPPAGPAGDDPADLPVLSAAAFDRRIDQQWRRTSYSAIIAGA-AH 826

Query: 800  GVSSEPEVTERDDEVAEVPLTEVVMSGPE----------------QPSPMADLPSGAKFG 843
            G S+    +ERD    +  L +  +  PE                 PSPM+ L  GA FG
Sbjct: 827  GPSAVETGSERDGARLDTALDDEPIEAPEPLAGNVIEDESGERTGTPSPMSGLSFGAGFG 886

Query: 844  SLVHAVLETSDPFAIDLAAELESQIRVQSAWWXXXXXXXXXXXXXXXMHDXXXXXXXXXX 903
            +LVH VLE  D  A D+ + + +Q+  ++A                              
Sbjct: 887  TLVHEVLEYVDTSAPDIRSHV-AQLVARAAGVRGGTVDVNVLTDALV---GVLTTPLGFG 942

Query: 904  XXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASDPLAPYADR 963
                I   DRL E+DFE PL                +A++  L+  HL A DPL PYA  
Sbjct: 943  DLWSIAPRDRLAELDFELPL--GDDAASDETETGATVAEIADLMDRHLGADDPLRPYAQV 1000

Query: 964  LSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYHRPRL 1023
            L G  +    LRG+L+GS+D+VLR+PDG   RY+VVDYKTN L   +  L   D+H   +
Sbjct: 1001 LRG--VPAARLRGFLTGSIDSVLRVPDG---RYVVVDYKTNRLRPGE--LMVEDFHSGAM 1053

Query: 1024 IEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPMLDGHP 1083
               M+H+ YPLQALLY+V LHR+LRWR  GY P  HLGGV Y FVRGM GP TP      
Sbjct: 1054 ATEMIHAHYPLQALLYSVALHRYLRWRIAGYTPEHHLGGVQYHFVRGMAGPSTP----PG 1109

Query: 1084 AGVFSWSPPAALVTALSDLL 1103
             GVF W PP+ LVTA+SDLL
Sbjct: 1110 CGVFEWKPPSELVTAISDLL 1129


>tr|C1RHS1|C1RHS1_9CELL Tax_Id=446466 SubName:
            Full=Exodeoxyribonuclease V, alpha subunit;[Cellulomonas
            flavigena DSM 20109]
          Length = 1794

 Score =  563 bits (1451), Expect = e-158
 Identities = 398/1070 (37%), Positives = 528/1070 (49%), Gaps = 73/1070 (6%)

Query: 4    FDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELR 63
            F++ GPLPA   TTVLEASAGTGKTF +AAL  RYVAEG A L E+LL+TFGR A+ ELR
Sbjct: 5    FEVCGPLPA--GTTVLEASAGTGKTFTIAALAARYVAEGHALLPELLLVTFGRTATSELR 62

Query: 64   ERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFDA 123
            +RVR ++V   R         D A    D+ L+ HL D   AE   R+ RL  AL+  DA
Sbjct: 63   DRVRARLVATERALR------DPAARTSDDVLVRHLADVDDAELARRRDRLTVALSQVDA 116

Query: 124  ATIATTHQFCQLVLKSLGV---AGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPP 180
            ATI TTH FCQ +L++LG     G  + G TLV D+ +L  E+VDDLYL  +    D P 
Sbjct: 117  ATITTTHGFCQQMLRALGTTTGGGVVEPGATLVPDVADLEAEVVDDLYLAAYA-GADQPV 175

Query: 181  LTYRDALRIARAVVANPSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXXX 240
            LT  DA  +ARA V++ +  L P DAPPG+        A  V  E+  R+          
Sbjct: 176  LTVADAREVARAAVSDHAALLAPDDAPPGTAPDHRYRLARAVRHEVVRRRRAAHVVDYDD 235

Query: 241  XXXXXXXXXXXXXXXXXXXMQQRWP--VVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGD 298
                                + R P  VVMVDEFQDTD VQWQ++ +AF G  TL+LIGD
Sbjct: 236  LLTLLRDALTDPATGAAAAERVRAPYRVVMVDEFQDTDQVQWQILRTAFHGHRTLVLIGD 295

Query: 299  PKQAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVR 358
            PKQAIYAFRG D+ TYL A   A    TL  +WR+D+ ++D L  ++ GA LGDP IVV 
Sbjct: 296  PKQAIYAFRGADVHTYLEARGVA-TTATLGRSWRTDAPVLDGLAHLMGGAALGDPRIVVH 354

Query: 359  DVKAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLA 418
             V+A H   RL G P                        +D +R  + RD+A+ +   L 
Sbjct: 355  PVEAAHTERRLDGGP----PVLVRRVTRRAVGAGSAAPKVDTVRSVVHRDVAARVVLTLT 410

Query: 419  SGATFAG---RALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXX 475
                  G   R +   D+AV+  ++ DA A   AL   G+ AV +G + VF++       
Sbjct: 411  HSRLRDGDAWRPVLPGDVAVLARRNADALAVREALAAVGVPAVVSGLSSVFTTAAARDWL 470

Query: 476  XXXXXFDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARERGVAA 535
                          V AAA T F G  A  LA   DA  + +A+ +R W+     +GVAA
Sbjct: 471  VLLSALAATGDTARVAAAALTPFVGWDATRLAGASDAQREDLADRMRTWSHVLAGQGVAA 530

Query: 536  IFEAAQLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRG 595
            + +A    G+ +R+ +  +G+R +TD+ HV ++L   +        AL +WLR + ++  
Sbjct: 531  LLQATAAAGLHERLAARVDGERVLTDVRHVGEVLHAAARDAGLGAAALTEWLRARIDEAA 590

Query: 596  --GATERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVL-FH-DGGTR 651
               A ER+RR+++DAAAVQ++TV  +KGL++PVV +PFA++R +     VL +H D GTR
Sbjct: 591  VDYAEERSRRLETDAAAVQVVTVHAAKGLEFPVVMVPFAWDRWVPRDPSVLRYHDDDGTR 650

Query: 652  CLHIGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXX 711
             LH+GG+ SP +         E A +D RL YVA+TRA SQVV WW+P+    +      
Sbjct: 651  RLHVGGRGSPGYDEARARHQAEEAGEDLRLAYVALTRASSQVVLWWAPSTVSASGAVGRL 710

Query: 712  XXXXXXXDSVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXXXXXXSE- 770
                   D + PD   P    D+ A         +GG  V E+V              E 
Sbjct: 711  VLGARDADGLPPD-TVPVPRDDQAAAGFDALAAGSGGTVVHETVDAAPPVVRWEPVRGEP 769

Query: 771  --LATRRFDRGIDIRWRRTSYSGLIRMA-----------EATGVSSEPE---VTERDDEV 814
              L   R  RG+D+ WRRTSYSG+   A           +  GV+ EPE   + +  D  
Sbjct: 770  GPLEVARLGRGVDLTWRRTSYSGITAAAHDAGPAGPSVPDRPGVTDEPEDPGIQDETDGP 829

Query: 815  AEVP-----------LTEVVMSGPEQP---------SPMADLPSGAKFGSLVHAVLETSD 854
            A  P           L  +  + P+           SP+ADLP G  FG+LVH VLE  D
Sbjct: 830  APTPPPHAGAGDEPDLAVLAATTPDPALVAALRAVRSPLADLPGGTAFGTLVHHVLENVD 889

Query: 855  PFAIDLAAELESQI--RVQSAWWXXXXXXXXXXXXXXXMHDXXXXXXXXXXXXRQIGLPD 912
              A DL  EL ++                         MH              Q+   D
Sbjct: 890  TAAADLRGELRARCAEAAGGGGGLGLDPDALADALLPSMH-TPAGPLLGGRTLAQVPPHD 948

Query: 913  RLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASDPLAPYADRL----SGDA 968
            RL E+D E PL                LADV  LL AHLD  DP A YA RL    +   
Sbjct: 949  RLAELDLELPL--AGGDLDPAGRRPATLADVADLLDAHLDPDDPFAAYAGRLRWLHADPG 1006

Query: 969  LGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADY 1018
                +LRGYL+GS+DAVLR+      RY+VV+YKTN L  PD PLTA  Y
Sbjct: 1007 TRPAALRGYLTGSIDAVLRVDVDGDTRYVVVEYKTNRLAPPDDPLTAWHY 1056


>tr|Q73SI0|Q73SI0_MYCPA Tax_Id=1770 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium paratuberculosis]
          Length = 378

 Score =  481 bits (1238), Expect = e-133
 Identities = 251/373 (67%), Positives = 282/373 (75%)

Query: 96  LAHLLDGTAAERDARQQRLRDALAGFDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVED 155
           +A+LLDGT     AR+QRLRDALAGFDAATIATTHQFCQLVL+SLGVAGDT AGVTL++ 
Sbjct: 1   MAYLLDGTEDRLAARRQRLRDALAGFDAATIATTHQFCQLVLRSLGVAGDTAAGVTLLDS 60

Query: 156 LDELVTEIVDDLYLVHFGRDRDDPPLTYRDALRIARAVVANPSTQLRPLDAPPGSRAAIC 215
           LDELV EIVDDLYL HFG+D DDP L YR+ALR+AR VV NPS QLRPL   PGSRAA+ 
Sbjct: 61  LDELVAEIVDDLYLAHFGQDHDDPVLHYREALRLARDVVNNPSAQLRPLHPEPGSRAAVS 120

Query: 216 VGFAHHVLEELETRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDT 275
           + FA+ VL EL+TRK                             M QRWP+VMVDEFQDT
Sbjct: 121 LRFANDVLAELDTRKRRLGVLGYDDLLTRLADALATEHSPARLRMHQRWPIVMVDEFQDT 180

Query: 276 DAVQWQVIDSAFSGRCTLILIGDPKQAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDS 335
           D VQWQVID AFSGR TLILIGDPKQAIYAFRGGDIVTYL AA+TAG K+TL TNWRSDS
Sbjct: 181 DPVQWQVIDRAFSGRSTLILIGDPKQAIYAFRGGDIVTYLRAAETAGQKKTLDTNWRSDS 240

Query: 336 ALVDRLQVVLRGAELGDPAIVVRDVKAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQN 395
           AL+ RLQVVLRGA+LGDPAI V DV AHH+GHRL+GAP ND                I N
Sbjct: 241 ALLQRLQVVLRGAQLGDPAIAVNDVAAHHRGHRLSGAPRNDPFRLRVVSRNTLGRRGIAN 300

Query: 396 LPIDILRDHIGRDLASDIGALLASGATFAGRALQANDIAVIVEKHKDARACHRALTDAGI 455
           LPID LR HIG DLA+DI ALLA+GATF G+ L+A DIAVIVE+H+DA+AC  AL DAG+
Sbjct: 301 LPIDELRQHIGADLAADIRALLAAGATFDGKPLRAGDIAVIVERHRDAQACFTALCDAGV 360

Query: 456 HAVYTGDTDVFSS 468
            AVYTG++DVF+S
Sbjct: 361 PAVYTGNSDVFTS 373


>tr|Q6A850|Q6A850_PROAC Tax_Id=1747 SubName: Full=Exodeoxyribonuclease
            V beta chain; EC=3.1.11.5;[Propionibacterium acnes]
          Length = 1078

 Score =  404 bits (1037), Expect = e-110
 Identities = 349/1123 (31%), Positives = 500/1123 (44%), Gaps = 79/1123 (7%)

Query: 4    FDLLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELR 63
            FD+  PLP    T +L ASAGTGKT+ ++A+  + +A G   +  +LL+TF R+A++ELR
Sbjct: 7    FDITRPLP--QGTVLLAASAGTGKTWTISAVCAKAIATGLVHMKNLLLVTFNRSAARELR 64

Query: 64   ERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFDA 123
             RV  ++V+   +   +R  SD  D        + +  G A        R+  AL  FD 
Sbjct: 65   GRVYERLVNTRLLLAGAREPSDPCD-------WSLIRCGRAGFT-----RVESALDNFDR 112

Query: 124  ATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPPLTY 183
            A I TTH+F   +L  LGV  D D    L+ DL  L TE+ DD YL  +  D D PP + 
Sbjct: 113  AVITTTHEFASRMLVELGVLSDHDPSSVLMTDLAPLATEVSDDHYLAQY-LDYDRPP-SV 170

Query: 184  RDALRIARAVVAN----PSTQLRPLDAPPGSRAAICVGFAHHVLEELETRKXXXXXXXXX 239
            R+   ++R V       P       D P        V +A  V E++  R          
Sbjct: 171  REKRELSRDVAVKYGEVPIFSKDDADTPVQD-----VLWALSVREDVRRRSKSRSVHTFD 225

Query: 240  XXXXXXXXXXXXXXXXXXXX--MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIG 297
                                  +  R+ +VMVDEFQDTD +QW+++  AF G   L LIG
Sbjct: 226  DLIGDLVKALRDPYRGPLARATLAHRFGLVMVDEFQDTDPLQWEILRRAFHGHSNLWLIG 285

Query: 298  DPKQAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVV 357
            DPKQ+IYAFRG DI  Y  AAQ+A     L  N+R+D  +V+ +  +   A+LG   I +
Sbjct: 286  DPKQSIYAFRGADIHAYQDAAQSASHVLHLDVNYRTDKPIVEAVNTLFSNAQLGHD-ISM 344

Query: 358  RDVKAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDH--IGRDLASDIGA 415
              V AHHQ  R+  A  +                      ++       +  DL + +  
Sbjct: 345  ELVTAHHQESRIKTAATDGPRYHWSQPFQIRCLQAPAGAQLNTATSDQFVTEDLVNQVIM 404

Query: 416  LLASGATFAG----RALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXX 471
            +L  G         R L+  DIA++V   +       AL+ A   AV++G + V+SS   
Sbjct: 405  MLEGGTVVQDGDGLRPLRPTDIAILVRTRRRGAELATALSQAHQPAVFSGASPVWSSQAA 464

Query: 472  XXXXXXXXXFDQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYARER 531
                      +        R   + +  G T  DLA     +   +A  L  W+      
Sbjct: 465  EDLITLLEALENTDERLRTRLCLSDLI-GATPADLAASDSRVRSDLAIDLARWSSTWTMT 523

Query: 532  GVAAIFEAA-QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQ 590
            GV    EAA    G+  R++S   G+R++TDL  V Q     +   R T  A   W+R Q
Sbjct: 524  GVWGTVEAALHRPGVLVRLVSMAGGERYVTDLRQVAQKAHIAACEGRLTATATAAWIREQ 583

Query: 591  REDRGGATERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQEREL---VLFHD 647
            ++  G   +  RR+DSD  AV IMT+  +KGL +PVV LP   N    ++ +   +++HD
Sbjct: 584  QQLAGD--DEPRRLDSDQQAVIIMTIHEAKGLGFPVVLLPDITNGWAPKQSINGPIVWHD 641

Query: 648  GGTRCLHIGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXX 707
            G  R L I  + +     +E    ++   ++ RL YVA+TRA+S V  WWSP    P   
Sbjct: 642  GQRRVLDISSQGTDRSIAIES-HEEDERGENLRLLYVALTRARSAVRLWWSPC---PLRH 697

Query: 708  XXXXXXXXXXXDSVVPDRATPAKITDEDAWDRFQQWQAAG--GPTVEESVXXXXXXXXXX 765
                       D    +  +    TD         W  +G     +  +           
Sbjct: 698  RWSAFQRLVEMDRTTGELGSGVAGTDPGTLP----WLNSGPIATVIAPANQKLLTRSVSA 753

Query: 766  XXXSELATRRFDRGIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMS 825
               + +  R   R +D  + RTSYSGL   A      SEP      DE  +    +    
Sbjct: 754  QPRACVVPRTLTRPLDTAFARTSYSGLT--ANLHAAVSEPMTDGLIDEPVDDETVDDTAP 811

Query: 826  GPEQPSPMADLPSGAKFGSLVHAVLETSDPFAIDLAAELESQIR--VQSAWWXXXXXXXX 883
            G      +  LP G  FG+LVH VLE  D  AIDL++E+ S  R  ++ +          
Sbjct: 812  G------LCGLPGGTSFGTLVHTVLEYIDTAAIDLSSEVLSITRRALRMSPLPDVPPSEL 865

Query: 884  XXXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADV 943
                   +H                   DRL EM+FE  +                + D+
Sbjct: 866  ATSLEQVLHSDLGPLAPGMTLA-DFSPADRLAEMNFELAMAQSGRSTT--------MTDL 916

Query: 944  GALL--RAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDY 1001
             +LL   + +   DP++ Y + L+    G Q+LRG+L+GS+DAVLR PDG   R+LVVDY
Sbjct: 917  ASLLCDPSLVPPDDPISGYGEILAHIPNGDQALRGFLTGSIDAVLRRPDG---RHLVVDY 973

Query: 1002 KTNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLG 1061
            KTN +    + L+   Y    +   M  S YPLQ LLY+  LHRFL    PGYDPA HLG
Sbjct: 974  KTNRIPGVHK-LSPHMYDAHTMRTMMFSSHYPLQGLLYSAALHRFLASSLPGYDPATHLG 1032

Query: 1062 GVLYLFVRGMCGPDTPMLDGH-PAGVFSWSPPAALVTALSDLL 1103
             + YLFVRGM   D P+ DG  P GVF+W P   L+ A+S+ L
Sbjct: 1033 PIGYLFVRGMA--DRPVPDGDMPDGVFTWHPRPELIEAISERL 1073


>tr|C6MV57|C6MV57_9DELT Tax_Id=443143 SubName:
            Full=Exodeoxyribonuclease V, beta subunit;[Geobacter sp.
            M18]
          Length = 1116

 Score =  336 bits (861), Expect = 1e-89
 Identities = 326/1160 (28%), Positives = 499/1160 (43%), Gaps = 135/1160 (11%)

Query: 1    MRPFDLLG-PLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAAS 59
            M+ FDLL  PL   N   ++EASAGTGKTF +A +  R V E    +  +L++TF  AA+
Sbjct: 1    MKRFDLLHTPLSGRN---LIEASAGTGKTFTIAGVYLRLVLEEELDVSRILVVTFTEAAT 57

Query: 60   QELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALA 119
            +EL+ERVR ++ +A   F            A ++ L+A LL  ++    AR+  L  A+ 
Sbjct: 58   KELKERVRKKLKEAESGFEAG---------ASEDFLIAGLLQSSSDHHKARRL-LASAVR 107

Query: 120  GFDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVH-FGRD--- 175
             FD A I T H FCQ +L+       +     LV D  +++TEI  D + ++ +G     
Sbjct: 108  SFDEAAIFTIHGFCQRMLQDNPFESGSLCDTELVTDQGKILTEIAQDYWRINCYGAPVER 167

Query: 176  ---RDDPPLTYRDALRIARAVVANPSTQLRPLDAPPGSRA-------AICVGFAHHVLEE 225
                D   ++    L++A+ V ++P+  + P   PP   +       A+  GF  ++  E
Sbjct: 168  IAAADAARVSPESLLKLAQRVCSDPNATVIP--DPPAETSEVEDWLLALKRGFCDYLRAE 225

Query: 226  LETRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDS 285
            L  RK                             +++R+   ++DEFQDTD +Q+ + D+
Sbjct: 226  LPKRKRLRNVRSFDDLLGDLRAALTRTGSTLPRLIRERYQAALIDEFQDTDPIQFAIFDA 285

Query: 286  AFSGRCTL--ILIGDPKQAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQV 343
             +   C +   LIGDPKQAIY+FRG DI  Y+ AA+   ++ TL  N+RS+  L++ +  
Sbjct: 286  IYPVGCEIPFFLIGDPKQAIYSFRGADIFAYMGAAEATEERHTLLQNFRSEPGLIEAVNT 345

Query: 344  VLRGAELG--DPAIVVRDVK-AHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDI 400
            +    +L    P I    V+ A  +  RL  A                    I       
Sbjct: 346  LFASRDLPFLYPQIGFNKVEAAPKEASRLTEAGERKAPLKFWLAPRKDAGKPINK---GD 402

Query: 401  LRDHIGRDLASDIGALLASGAT----------------FAGRALQANDIAVIVEKHKDAR 444
              D +   +AS+I  LL  GA                 +A RA+Q  DIAV+V  ++ A+
Sbjct: 403  AWDQLPETVASEIARLLRGGAAGKLAIEELKKEGEDERWAQRAVQPRDIAVLVRANRQAK 462

Query: 445  ACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXXFDQPHRPGIVRAAAATMFFGKTAN 504
               RALT  GI +V     ++F S              QP    ++R A AT   G +  
Sbjct: 463  LMQRALTRRGIPSVLCSAGNLFESDEAAELLRLLSAVAQPGHESLLRGALATDLVGVSGA 522

Query: 505  DLA--RGGDALTDRVAETLREWAD-YARERGVAAIFEAAQLGGMSDRVLSWQEGQRHMTD 561
            +LA     +   + + E  R + D +     ++   +  +   + +R+L+   G+R +T+
Sbjct: 523  ELALLMDDEKGWEEILEEFRGYHDTWNTGSCMSMALQFMEKRKVRERLLAEPMGERRLTN 582

Query: 562  LAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATERNRRIDSDAAAVQIMTVWVSKG 621
            L H  + + +   +ER  +  +  WL  +  +     E   R+++D AAVQ++T+  SKG
Sbjct: 583  LLHAIETIHQAQVKERLGMEGVIAWLACRITEEPKKEEYEIRLETDEAAVQLVTIHKSKG 642

Query: 622  LQYPVVYLPFAFNRNIQERELVLFHDGGTR-CLHIGGKDSPDFGTVERLGAKEAANDDSR 680
            L+YP+V+LPF +     + E  LFHD   +  L IG   S +    + L A+EA  +  R
Sbjct: 643  LEYPIVFLPFCWAEFNGKDEGALFHDEDRKVVLDIG---SQELEMNKALAAQEALAESLR 699

Query: 681  LTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXDSVVPDR-ATPAKITDEDAWDR 739
            L YVA+TR + +    W    D  +               + PD+ A   ++T +D   R
Sbjct: 700  LLYVALTRGKHRTYLIWGAFKDAGDSALHYL---------LHPDQTAAKGQVTLKDCEIR 750

Query: 740  -----FQQWQAAGGPTVEESVXXXXXXXXXXXXXSELATRRFDRGIDIRWRRTSYSGLIR 794
                   Q  +     ++                 EL    F   I   WR  S++ L  
Sbjct: 751  ERLTSLAQSSSGAIELLDMPPADLEQYRARDERTPELTPVLFTGTITRDWRVASFTSLSS 810

Query: 795  MAEATGVSSEPEVTERDD--EVAEVPLTEVVMSGPEQPSPMADLPSGAKFGSLVHAVLET 852
                T      E+ +RD+   V E    +V      +PS +   P GAK G  +H + E 
Sbjct: 811  RQHHTA-----ELPDRDEGSPVEEHSARDV------EPSGIFAFPKGAKAGIFLHKIFEE 859

Query: 853  SDPFAIDLAAELESQIRVQ------SAWWXXXXXXXXXXXXXXXMHDXXXXXXXXXXXXR 906
             D      AA LE  +  Q      SA W               +               
Sbjct: 860  LD--FTQAAARLEPLVDDQLDKHGFSADWSMAVREMVRNVLQAPL-------GSEGITLT 910

Query: 907  QIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASDPL---APYADR 963
            Q+GL  RL E++F FPL               RL +  A   A  DA+D        AD 
Sbjct: 911  QVGLERRLTELEFFFPLSLVTSD---------RLKEAAARFMARHDAADGTNFPVDVADL 961

Query: 964  LSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYHRPRL 1023
             S   L    ++G L G +D V       G RY +VD+K+N LG+  +     DY +  L
Sbjct: 962  FS--RLSFSPVKGMLLGFIDLVFE----QGGRYYIVDWKSNHLGNAPQ-----DYGQTAL 1010

Query: 1024 IEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPMLDGHP 1083
              AM  + YPLQ LLYTV L  +LR R P YD  RH GGV YLF+RG        +DG  
Sbjct: 1011 KRAMEENFYPLQYLLYTVALDNYLRLRIPDYDYDRHFGGVFYLFLRG--------VDGTG 1062

Query: 1084 AGVFSWSPPAALVTALSDLL 1103
             GVF+  PP   +  L+ +L
Sbjct: 1063 NGVFTDRPPKEFIAELAAVL 1082


>tr|B5EAR6|B5EAR6_GEOBB Tax_Id=404380 SubName:
            Full=Exodeoxyribonuclease V, beta subunit;[Geobacter
            bemidjiensis]
          Length = 1130

 Score =  331 bits (849), Expect = 3e-88
 Identities = 321/1162 (27%), Positives = 497/1162 (42%), Gaps = 137/1162 (11%)

Query: 1    MRPFDLLG-PLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAAS 59
            M+ FDLL  PL   N   ++EASAGTGKTF +A +  R V E +  +  +L++TF  AA+
Sbjct: 1    MKRFDLLHTPLAGRN---LIEASAGTGKTFTIAGVYLRLVLEQKFDVSRILVVTFTEAAT 57

Query: 60   QELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALA 119
            +EL+ER+R ++ +A   F            A D+ L+  LL  T    +AR+  L  A+ 
Sbjct: 58   KELKERIRNKLKEAENGFLTG---------ATDDFLIEGLLKSTQDHSEARRL-LSSAIR 107

Query: 120  GFDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVH-FGRDRDD 178
             FD A I T H FCQ +L+       +     LV D  +++ EI  D + ++ +G+  + 
Sbjct: 108  SFDEAAIFTIHGFCQRMLQDNPFESGSLCDTELVTDQGKILMEIAQDYWRINCYGQPEER 167

Query: 179  ------PPLTYRDALRIARAVVANPSTQLRPLDAPPGSRA------AICVGFAHHVLEEL 226
                    ++    L++ + V  +P+  + P D P  +         +  GF  ++  EL
Sbjct: 168  IAAAGAAKVSPESLLKLVQRVCGDPNAAVIP-DPPADANELDDWLQGLKRGFFDYLRAEL 226

Query: 227  ETRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSA 286
              RK                             +++R+   ++DEFQDTD +Q+ + D+ 
Sbjct: 227  PKRKRLKNLRSFDDLLLDLHAALLRPASTLPRLIRERYQAALIDEFQDTDPLQFAIFDAI 286

Query: 287  F--SGRCTLILIGDPKQAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVV 344
            +         LIGDPKQAIY+FRG DI  Y+ AAQ   ++ TL  N+RS++ L+D +  +
Sbjct: 287  YPVGHEAPFFLIGDPKQAIYSFRGADIFAYMGAAQATKERHTLLQNFRSEAGLIDAVNAL 346

Query: 345  LRGAELG--DPAIVVRDVK-AHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDIL 401
                EL    P I    V+ A  +  RL  A                    I        
Sbjct: 347  FASRELPFLYPQIGFNKVEAAPKEKSRLVEAGQRKAPLKLWLAPRKDAGKPINK---GDA 403

Query: 402  RDHIGRDLASDIGALLASGA------------------TFAGRALQANDIAVIVEKHKDA 443
             + +   +A++I  LL  GA                   +  RA++  DIAV+V  ++ A
Sbjct: 404  WEQLPETVAAEISRLLRDGADGKLTVEELRKDAEEGSENWVQRAVEPRDIAVLVRANRQA 463

Query: 444  RACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXXFDQPHRPGIVRAAAATMFFGKTA 503
            +   RALT  GI +V     ++F S              QP    ++R A AT   G + 
Sbjct: 464  KLMQRALTHRGIPSVLCSAGNLFESDEAAELLRLLSAVAQPGHESLLRGALATDLVGVSG 523

Query: 504  NDLAR--GGDALTDRVAETLREWAD-YARERGVAAIFEAAQLGGMSDRVLSWQEGQRHMT 560
             +LAR    +   + + E  R + D +     ++   +  +   +  R+L+   G+R +T
Sbjct: 524  TELARLMDDEKGWEEILEEFRSYHDTWNSGSCMSMALQFMEKREVRKRLLAEPMGERRLT 583

Query: 561  DLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATERNRRIDSDAAAVQIMTVWVSK 620
            +L H  + + +    ER  + A+  WL  +  +     E   R+++D AAVQ++T+  SK
Sbjct: 584  NLLHAIETIHQAQVNERLGMEAVISWLACRITEEPKKDEYEIRLETDEAAVQLVTIHKSK 643

Query: 621  GLQYPVVYLPFAFNRNIQERELVLFHD-GGTRCLHIGGKDSPDFGTVERLGAKEAANDDS 679
            GL+YP+V+LPF +     + E  LFHD  G   L IG   S   G  +   A+EA  +  
Sbjct: 644  GLEYPIVFLPFCWAEYAGKDEGALFHDEDGRVVLDIG---SEQMGEHKAQAAREALAESL 700

Query: 680  RLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXDSVVPDRATPAK----ITDED 735
            RL YVA+TR + +    W    D  +               ++    TP K    ++D D
Sbjct: 701  RLLYVALTRGKHRTYLTWGVFKDAGDSALHY----------LLHPGETPVKGQVTLSDAD 750

Query: 736  AWDRFQQWQAAGGPTVEE---SVXXXXXXXXXXXXXSELATRRFDRGIDIRWRRTSYSGL 792
               R     A+    +E                    +LA   F   I   WR  S++ L
Sbjct: 751  IRKRLDTLAASSAGRIEVLDLPAADLAPYRAHDKKAPDLAPLPFTGAISRDWRVASFTSL 810

Query: 793  IRMAEATGVSSEPEVTERDD--EVAEVPLTEVVMSGPEQPSPMADLPSGAKFGSLVHAVL 850
                  T      E+ +RD+   V E P+ +V      +P+ +   P GAK G  +H + 
Sbjct: 811  SSHKHHTA-----ELPDRDEGSPVEERPVHDV------EPTGIFAFPKGAKAGIFLHKIF 859

Query: 851  ETSDPFAIDLAAELESQIRVQ------SAWWXXXXXXXXXXXXXXXMHDXXXXXXXXXXX 904
            E  D     +  +L   ++ Q      +  W               + D           
Sbjct: 860  EDLD--FTRVGEQLSPLVKEQLDKHGFAPDWSQAVRDMVQNVLQAPLGD-------GEIA 910

Query: 905  XRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRA-HLDASDPLAP--YA 961
              Q+GL  RL EM+F FPL               RL +  A   A H  A     P   A
Sbjct: 911  LAQVGLERRLTEMEFFFPLSHVTSD---------RLREAAARFTAGHGTAGVAGLPVDLA 961

Query: 962  DRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYHRP 1021
            D  S   L    ++G L G +D V       G RY +VD+K+N LG+     T  +Y + 
Sbjct: 962  DLFS--RLSFAPVQGMLLGFIDLVFE----HGGRYYIVDWKSNHLGN-----TPGNYGQA 1010

Query: 1022 RLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPMLDG 1081
             L + M  + YPLQ LLYTV L  +LR R PGYD  RH GGV YLF+RG        +DG
Sbjct: 1011 ALKKEMEENFYPLQYLLYTVALDNYLRLRIPGYDYDRHFGGVFYLFLRG--------VDG 1062

Query: 1082 HPAGVFSWSPPAALVTALSDLL 1103
               GV++  PP  L+  L+++L
Sbjct: 1063 TGNGVYADRPPRELIAHLAEVL 1084


>tr|C6DYD0|C6DYD0_GEOSM Tax_Id=443144 SubName:
            Full=Exodeoxyribonuclease V, beta subunit;
            EC=3.1.11.5;[Geobacter sp.]
          Length = 1129

 Score =  327 bits (838), Expect = 6e-87
 Identities = 318/1159 (27%), Positives = 498/1159 (42%), Gaps = 132/1159 (11%)

Query: 1    MRPFDLLG-PLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAAS 59
            M+ FDLL  PL   N   ++EASAGTGKTF +A +  R V E +  +  +L++TF  AA+
Sbjct: 1    MKRFDLLHTPLAGRN---LIEASAGTGKTFTIAGVYLRLVLEEKFDVSRILVVTFTEAAT 57

Query: 60   QELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALA 119
            +EL+ER+R ++ +A   F            A ++ L+  LL  T    +AR+  L  A+ 
Sbjct: 58   KELKERIRNKLKEAENGFLTG---------AAEDFLIDGLLKSTPDHSEARRL-LGSAVR 107

Query: 120  GFDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVH-FGRDRDD 178
             FD A I T H FCQ +L+       +     LV D  +++ EI  D + ++ +G+  D 
Sbjct: 108  SFDEAAIFTIHGFCQRMLQDNPFESGSLCDTELVTDQGKILMEIAQDYWRINCYGQPEDR 167

Query: 179  ------PPLTYRDALRIARAVVANPSTQLRPLDAPPGSRA------AICVGFAHHVLEEL 226
                    ++    L++A+ V  +P+  + P D P  +         +  GF  ++  EL
Sbjct: 168  IAAAGAAKVSPESLLKLAQRVCGDPNAAVIP-DPPDDATELDDWLQGLKRGFFDYLRAEL 226

Query: 227  ETRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQWQVIDSA 286
              RK                             +++R+   ++DEFQDTD +Q+ + D+ 
Sbjct: 227  PKRKRLKNLRSFDDLLLDLHAALLRPASPLPRLIRERYQAALIDEFQDTDPLQFAIFDAI 286

Query: 287  F--SGRCTLILIGDPKQAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSALVDRLQVV 344
            +         LIGDPKQAIY+FRG DI  Y+ AAQ   ++ TL  N+RS++ L+D +  +
Sbjct: 287  YPVGHEAPFFLIGDPKQAIYSFRGADIFAYMGAAQATKERHTLLQNFRSEAGLIDAVNTL 346

Query: 345  LRGAELG--DPAIVVRDVK-AHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDIL 401
                EL    P I    V+ A  +  RL  A                    I        
Sbjct: 347  FASRELPFLYPQIGFNRVEAAPKEKSRLVEAGQRKAPLKLWLAPRKDAGKPINK---GDA 403

Query: 402  RDHIGRDLASDIGALLASGAT-----------------FAGRALQANDIAVIVEKHKDAR 444
             + +   +A++I  LL  GA                  +  RA++  DIAV+V  ++ A+
Sbjct: 404  WEQLPETVAAEISRLLRDGAAGKLTVEELQKDAEESEKWVRRAVEPKDIAVLVRANRQAK 463

Query: 445  ACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXXFDQPHRPGIVRAAAATMFFGKTAN 504
               RALT  GI +V     ++F S              QP    ++R A AT   G +  
Sbjct: 464  LMQRALTRRGIPSVLCSAGNLFESDEAAELLRLLSAVAQPGHESLLRGALATELVGVSGT 523

Query: 505  DLAR--GGDALTDRVAETLREWAD-YARERGVAAIFEAAQLGGMSDRVLSWQEGQRHMTD 561
            +LAR    +   + + E  R + D +     ++   +  +   +  R+L+   G+R +T+
Sbjct: 524  ELARLMNDEKGWEEILEEFRGYHDTWNSGSCMSMALQFMEKREVRKRLLAEPMGERRLTN 583

Query: 562  LAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATERNRRIDSDAAAVQIMTVWVSKG 621
            L H  + + +    ER  + A+  WL  +  +     E   R+++D AAVQ++T+  SKG
Sbjct: 584  LLHAIETMHQAQVNERLGMEAVIAWLACRITEEPKKEEYEIRLETDEAAVQLVTIHKSKG 643

Query: 622  LQYPVVYLPFAFNRNIQERELVLFHD-GGTRCLHIGGKDSPDFGTVERLGAKEAANDDSR 680
            L+YP+V+LPF +     + E  LFHD  G   L IG +   +    +   A+EA  +  R
Sbjct: 644  LEYPIVFLPFCWAEYAGKDEGALFHDEEGRVVLDIGSEQMVEH---KAQAAREALAESLR 700

Query: 681  LTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXDSVVPDRATPAK----ITDEDA 736
            L YVA+TR + +    W    D  +               ++    TP K    ++D D 
Sbjct: 701  LLYVALTRGKHRTYLTWGAFKDAGDSALHY----------LLHPGQTPVKGQVTLSDADI 750

Query: 737  WDRFQQWQAAGGPTVEE---SVXXXXXXXXXXXXXSELATRRFDRGIDIRWRRTSYSGLI 793
             +R     A+    +E                    +LA   F   +   WR  S++ L 
Sbjct: 751  RERLDTLAASSAGKIEVLDLPAADLAPYRPNDEKAPDLAPLPFTGEVSRDWRVASFTSLS 810

Query: 794  RMAEATGVSSEPEVTERDDE--VAEVPLTEVVMSGPEQPSPMADLPSGAKFGSLVHAVLE 851
                 T      E+ +RD+E  + E P  ++      +P+ +   P GAK G  +H + E
Sbjct: 811  SHKHHTA-----ELPDRDEESPIEERPGRDI------EPTGIFAFPKGAKAGIFLHKIFE 859

Query: 852  TSDPFAI--DLAAELESQIRVQ--SAWWXXXXXXXXXXXXXXXMHDXXXXXXXXXXXXRQ 907
              D   +   L+  +E Q+     +  W               + D             Q
Sbjct: 860  DLDFTRVGEQLSPLVEEQLDKHGFAPDWSQAVRDMVQNVLQAPLGD-------GGIALAQ 912

Query: 908  IGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRA-HLDASDPLAP--YADRL 964
            +GL  RL EM+F FPL               RL +  A   A H  A  P  P   AD  
Sbjct: 913  VGLERRLTEMEFFFPLSHVTSE---------RLREAAARFTAGHGAAGVPGFPVDLADLF 963

Query: 965  SGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYHRPRLI 1024
            S   L    ++G L G +D V       G RY +VD+K+N LG+        DY +  L 
Sbjct: 964  S--RLSFAPVQGMLLGFIDLVFE----HGGRYYIVDWKSNHLGN-----APGDYGQAALK 1012

Query: 1025 EAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPMLDGHPA 1084
            + M  + YPLQ LLYTV L  +LR R P Y   RH GGV YLF+RG        +DG   
Sbjct: 1013 KEMEENFYPLQYLLYTVALDNYLRLRIPDYHYDRHFGGVFYLFLRG--------VDGTGN 1064

Query: 1085 GVFSWSPPAALVTALSDLL 1103
            GV++  PP  L+  L+++L
Sbjct: 1065 GVYADRPPRELIVHLAEVL 1083


>tr|B9M4M3|B9M4M3_GEOSF Tax_Id=316067 SubName:
            Full=Exodeoxyribonuclease V, beta subunit;[Geobacter sp.]
          Length = 1083

 Score =  289 bits (740), Expect = 1e-75
 Identities = 310/1150 (26%), Positives = 462/1150 (40%), Gaps = 119/1150 (10%)

Query: 1    MRPFDLLG-PLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAAS 59
            M P DLL  P+   N   ++EASAGTGKTFA+AAL  R V E    ++++L++TF  AA+
Sbjct: 1    MSPLDLLNTPIAGRN---LIEASAGTGKTFAIAALYLRLVLEQHLPVEQILVVTFTEAAT 57

Query: 60   QELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALA 119
            +ELRER+R ++ +A   F            + D+ L+   L G   +R A  Q L +AL 
Sbjct: 58   KELRERIRKRLTEAAEAFGQG--------TSTDSFLMC--LIGRITDRSAAGQALTNALR 107

Query: 120  GFDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVH-------F 172
             FD A I T H FCQ +L+       +     LV D   ++ +I  D +  H        
Sbjct: 108  SFDEAAIFTIHGFCQRMLQENPFESGSLYDTELVTDERPVLRQIAADYWRTHCYNAPPAL 167

Query: 173  GRDRDDPPLTYRDALRIARAVVANPSTQLRP-----------LDAPPGSR--AAICVGFA 219
             R   +  LT    L +A     NP  ++ P           +D     +   A+  GF 
Sbjct: 168  ARTAIEAGLTPEALLELASRHAGNPLVRILPEPQAMVITQGGVDCDHAEKWLLALKRGFF 227

Query: 220  HHVLEELETRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMQQRWPVVMVDEFQDTDAVQ 279
             ++  EL  RK                             +++ +   ++DEFQDTD +Q
Sbjct: 228  DYLAAELPKRKGKKNIRFFQDLLLDLHAAVQTTDCSLAPMIREHYRAALIDEFQDTDPIQ 287

Query: 280  WQVIDSAFSGRCT--LILIGDPKQAIYAFRGGDIVTYLHAAQTAGDKRTLATNWRSDSAL 337
            +++ D  +    T    LIGDPKQAIY+FRG DI  YL AA++     +L  NWRS+  L
Sbjct: 288  FRIFDRIYPAGDTTPFFLIGDPKQAIYSFRGADIFAYLDAAKSPLVGHSLGENWRSEPRL 347

Query: 338  VDRLQVVL--RGAELGDPAIVVRDVKAHHQGHRLAGAPHNDXXXXXXXXXXXXXXXXIQN 395
            +  +  +   R A  G   I    V    +   L      D                   
Sbjct: 348  IQAVNGLFSSRTAPFGMEEIQFHQVTPAERERELLTL---DGREDAAPFRFWFAGRRETG 404

Query: 396  LPID------ILRDHIGRDLASDIGALLASGA----TFAGRALQANDIAVIVEKHKDARA 445
             PI+      +L D +    A +I  LL  GA        R +   DIAV+V  ++ AR 
Sbjct: 405  KPINKGDAWQMLTDAV----AGEISQLLHDGAEGRLCIGNRPIAPGDIAVLVRANRQARL 460

Query: 446  CHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXXFDQPHRPGIVRAAAATMFFGKTAND 505
              RAL+  GI +V     ++F S               P     VRAA  T   G + +D
Sbjct: 461  VQRALSRLGIPSVVCSAGNLFESAEAREVLHFLAAVADPANERQVRAALVTDLLGLSGDD 520

Query: 506  LARGGDALTDRVAETLREWADYARERGVAAIFEAAQLGGMS-----DRVLSWQEGQRHMT 560
            LA  G+    R    L E++ Y  +         A +G M+      R+L+  +G+R +T
Sbjct: 521  LAAIGEN-EPRWEAVLAEFSSYHDQWQTGGCMTMA-MGFMAARQVRSRILALSDGRRRLT 578

Query: 561  DLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATERNRRIDSDAAAVQIMTVWVSK 620
            ++ H  + +   +   R  +  +  WL  +  ++    E   R+++D+ AVQ++T+  SK
Sbjct: 579  NVLHCFEAVHGAAVLHRLGMEGVVSWLAERIGEKEQREEHEIRLETDSDAVQLVTIHKSK 638

Query: 621  GLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKDSPDFGTVERLGAKEAANDDSR 680
            GL+Y VV+ PF +    +  + V FH  G   L      SP+     +  A+EA  ++ R
Sbjct: 639  GLEYQVVFCPFNWAEYGRREKTVTFH--GDDRLPTIDMGSPELEVNRQRAAREAMAENLR 696

Query: 681  LTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXXXXXXDSVVPDRATPAKITDEDAWDRF 740
            L YVA+TRA+ +    W    D  N             ++          +TDE+     
Sbjct: 697  LLYVAVTRARHRCYLAWGAFKDAGNSALHYLLHPQATANN------GQVSLTDEEILADL 750

Query: 741  QQ--WQAAGGPTVEESVXXXXXXXXXXXXXSE-LATRRFDRGIDIRWRRTSYSGLIRMAE 797
             +    AAG   +E                 E    R F   ID  WR TS++     + 
Sbjct: 751  HRIAGNAAGSIAIEAPFQGTPQPYPAKAPQPEKCVCRTFTGRIDRDWRVTSFTSF--SSS 808

Query: 798  ATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMADLPSGAKFGSLVHAVLETSD--- 854
                +   E+ +RD   A +   E     P   S +   P G   G   H + E  D   
Sbjct: 809  TRHGAHAAELPDRD--AAALAKGEDYSDLP--ASGIFAFPRGTAAGIFFHEIFENLDFTD 864

Query: 855  -PFAIDLAAELESQIRVQSAWWXXXXXXXXXXXXXXXMHDXXXXXXXXXXXXRQIGLPDR 913
               A  L   L  +      W                  D             +IG   R
Sbjct: 865  FATAPGLVEALLKKHGFAGQWLETVLSMTRNVIQTRLTTD------AGSFTLSEIGPDRR 918

Query: 914  LREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLRAHLDASDPLAPYADRLSGDALGGQS 973
            L E++F FPL                  D  + L         LA  A +LS        
Sbjct: 919  LTELEFFFPLARISSDTFREAAASWN--DAASELN--------LAELAAKLS-----FTP 963

Query: 974  LRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYHRPRLIEAMLHSDYP 1033
            +RG L G +D VL      G RY ++D+K+N LG+        +Y    +   M  + Y 
Sbjct: 964  VRGMLRGFMDLVLE----HGGRYHIIDWKSNHLGNRQE-----NYGSGEMAREMADNLYH 1014

Query: 1034 LQALLYTVVLHRFLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPMLDGHPAGVFSWSPPA 1093
            LQ LLYTV LH +L+ R   YD  RH GGV Y+F+RG+        +   +G+F   PP 
Sbjct: 1015 LQYLLYTVALHGYLQLRLADYDYDRHFGGVFYIFLRGVGD------ESRDSGIFQARPPF 1068

Query: 1094 ALVTALSDLL 1103
             L+  LS LL
Sbjct: 1069 QLIDRLSRLL 1078


>tr|Q74CY7|Q74CY7_GEOSL Tax_Id=35554 (recB)SubName:
            Full=Exodeoxyribonuclease V, beta subunit;
            EC=3.1.11.5;[Geobacter sulfurreducens]
          Length = 1204

 Score =  268 bits (686), Expect = 2e-69
 Identities = 261/882 (29%), Positives = 369/882 (41%), Gaps = 85/882 (9%)

Query: 260  MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCT-LILIGDPKQAIYAFRGGDIVTYLHAA 318
            +++R+   ++DEFQDTD VQ+++  + FSG    L LIGDPKQAIY+FRG D+  YL A 
Sbjct: 369  LRERYRAALIDEFQDTDQVQYRIFRAVFSGGAVPLFLIGDPKQAIYSFRGADVFAYLEAR 428

Query: 319  QTAGDKR--TLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDVKAHH-QGHRLAGAPHN 375
            Q    +R  T+  NWRS   +V+ +  + R    G+   +  D+        R  G    
Sbjct: 429  QEIPAERRFTMDRNWRSTPEMVEAVSSLFRLG--GEHPFLAGDIAFPPVTAARRQGCSFG 486

Query: 376  DXXXXXXXXXXXXXXXXIQN-LPIDILRDHIGRDLASDIGALLASGATFAGRA------- 427
            D                 ++ + +   R  I   +A +I  LLA G   AG A       
Sbjct: 487  DRDPAPLQLWFFRRGESDRDCINLGTGRQRIVTAVADEISGLLADGR--AGTACLEDEDG 544

Query: 428  ----LQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXXFDQ 483
                L   D+AVIV  H +A    +AL + GI +V      +F +              +
Sbjct: 545  RMQPLTPGDVAVIVRSHFEAGLVQQALRERGIPSVVQSADSLFETREAGEVWTVMGAVAE 604

Query: 484  PHRPGIVRAAAATMFFGKTANDLA--RGGDALTDRVAETLREWADYARERGVAAIFEAA- 540
            P   G VRAA  T  FG   NDLA     +A  +      R++ D  RE+G   +F A  
Sbjct: 605  PGNEGRVRAALVTALFGLNGNDLALLMEQEAAWEARIAAFRDYRDLWREQGFMTMFRALL 664

Query: 541  QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
               G+ +R L   +G+R +T+L H  ++L + +   R    AL  W   +        + 
Sbjct: 665  DREGVRERCLPLPDGERRLTNLRHCAEVLHQAAVERRLGPDALTAWFGERVSVPPPGEDY 724

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKDS 660
              R++SD  AV+I+TV VSKGL+YPVV+ PF +     + +L L H+ G R +   G D 
Sbjct: 725  QIRLESDDRAVRIVTVHVSKGLEYPVVFAPFMWGGLRDDGDLTLCHEEGYRLVADFGTDR 784

Query: 661  PDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSP---AYDEPNXXXXXXXXXXXX 717
             D    +R    EA  ++ RL YVA+TRA+ +    W     A                 
Sbjct: 785  RD--ERQRRARTEALAENLRLLYVALTRARCRAYLVWGKFRGAETSAPGWLLHGSRPDGG 842

Query: 718  XDSVVPDRATPAKITDEDAWDRFQQWQAAGG---PTVEESVXXXXXXXXXXXXXSELATR 774
             D V     T  K TD+   +R      A G      E+               + L  R
Sbjct: 843  GDPVALLEGTLKKATDQTLLERLDHLATASGGGIAVTEDPCPDRLPRFRPAMGEAPLVCR 902

Query: 775  RFDRGIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGPEQPSPMA 834
             F   ID  WR  S++       A+G     E+ +RD    E+P      +       M 
Sbjct: 903  DFRGDIDAGWRVASFTSF-----ASGHREPAELPDRDQTPPELPPDAASDTAAPPEGSMF 957

Query: 835  DLPSGAKFGSLVHAVLETSDPFAI---DLAAEL---ESQIRVQSAWWXXXXXXXXXXXXX 888
              P G + G  +H + E  D FA+   D   +L   E +     A W             
Sbjct: 958  AFPRGPRAGIFLHGLFEQLD-FAVAGDDTVRDLVRRELERNGHGAQWLDPVSRMVGNVLN 1016

Query: 889  XXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVGALLR 948
              +                +     L E++F FPL              +R A V  +L 
Sbjct: 1017 VPL-----GGEGNSFRLADLAPGSWLAELEFYFPL------------RFVRDAQVATILA 1059

Query: 949  AH--LDASDPLAPYADRLS-GDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYKTNW 1005
                L     L   A R++ G+A      RG + G VD V R       RY ++D+K+N 
Sbjct: 1060 GAGVLPQGADLGAVARRIAFGEA------RGMVRGFVDLVFR----HSGRYYLIDWKSNH 1109

Query: 1006 LGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGGVLY 1065
            LG+      A DY   RL   M  S YPLQ LLYTV L+RFL  R PGY    H GGV Y
Sbjct: 1110 LGN-----RAEDYGPERLCREMERSLYPLQYLLYTVALNRFLERRLPGYRYEEHFGGVFY 1164

Query: 1066 LFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDLLDAGR 1107
            LF+RG+  P+ P L     GV+   P   LV AL+D L AGR
Sbjct: 1165 LFLRGI-DPERPAL-----GVYHDLPRPDLVRALTDCL-AGR 1199



 Score = 80.5 bits (197), Expect = 1e-12
 Identities = 66/184 (35%), Positives = 86/184 (46%), Gaps = 14/184 (7%)

Query: 1   MRPFD-LLGPLPAENSTTVLEASAGTGKTFALAALVTRYVAEGRARL-DEMLLITFGRAA 58
           +RP D L   L   N   ++EASAGTGKTFA+A L  R V EG   L D +L++TF  AA
Sbjct: 4   LRPHDNLTVELSGHN---LVEASAGTGKTFAIACLYLRLVVEGEGLLPDNILVVTFTEAA 60

Query: 59  SQELRERVRCQMVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDAL 118
           ++ELR R+R      +R   D   G    D   D   L     G A        R+  AL
Sbjct: 61  TKELRARIR----QRLRQARDRFAGGGAPDEFLDRLALGERWPGHA----TALARIDSAL 112

Query: 119 AGFDAATIATTHQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVH-FGRDRD 177
             FD A I+T H FC   L+       +     L  D + L+ ++ DD +  H FG D  
Sbjct: 113 QTFDCAAISTIHGFCLRALQENAFESGSLFDTELAADQEPLLRQVADDFWRHHFFGADAP 172

Query: 178 DPPL 181
             PL
Sbjct: 173 LLPL 176


>tr|A1BGA3|A1BGA3_CHLPD Tax_Id=290317 SubName: Full=DNA
            helicase/exodeoxyribonuclease V, beta subunit;
            EC=3.1.11.5;[Chlorobium phaeobacteroides]
          Length = 1221

 Score =  251 bits (641), Expect = 4e-64
 Identities = 250/891 (28%), Positives = 372/891 (41%), Gaps = 115/891 (12%)

Query: 260  MQQRWPVVMVDEFQDTDAVQWQVIDSAFSG-RCTLILIGDPKQAIYAFRGGDIVTYLHAA 318
            +++R+   ++DEFQDTD VQ+ +    ++G    L LIGDPKQAIY+FRG DI  Y+ AA
Sbjct: 389  LRKRYRAALIDEFQDTDPVQYDIFRRIYAGSEAPLFLIGDPKQAIYSFRGADIFAYMQAA 448

Query: 319  QTAGDKR--TLATNWRSDSALVDRLQVVLRGAE-------LGDPAIVVRDVKAHHQGHRL 369
               G +R  TL TNWRS   L+D   ++   A        +  P +V             
Sbjct: 449  SDVGRERSFTLNTNWRSVPKLLDAFNLLFDSARHPFVFDNIPSPPLVAGK---------- 498

Query: 370  AGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGR-DLASDIGALLASGA------- 421
             G P +                 +  L I +LR   G   L S      A+GA       
Sbjct: 499  -GLPRD-------------AESPVSPLEICLLRSGDGDGSLKSGESERFAAGACASMVTE 544

Query: 422  TFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXXF 481
            T  G +  A DIAVIV  H+ AR    AL + GI +V   D  VF+S             
Sbjct: 545  TINGGS-DAGDIAVIVRTHRQARMMQAALRECGIVSVMRSDESVFASVEAEEVRILVTAL 603

Query: 482  DQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYAR---ERG-VAAIF 537
             +P R  +VRAA  T  FG   +D+AR  D     V E L+++ +Y R   ERG +  + 
Sbjct: 604  AEPGRESLVRAALVTPLFGLNGSDIARLNDDENAWV-ERLQQFREYHRLWQERGFMLMVR 662

Query: 538  EAAQLGGMSDRVL--SWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRG 595
            E  +   + +R+L  S   G+R +T++ H  +LL + +H     +  L  W   +   R 
Sbjct: 663  ELMRHEAVRERLLALSGSSGERALTNVLHCFELLHREAHSRGLGMEGLVTWFGERVAARE 722

Query: 596  GATERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHI 655
               E   R++SD  AV+I+T  VSKGLQYP+V+ PF F       ++VLFHD        
Sbjct: 723  PGEEYQIRLESDEPAVRIVTAHVSKGLQYPIVFCPFQFGGAGSGGDVVLFHDD------- 775

Query: 656  GGKDSPDFGT--VER---LGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXX 710
             G+   DFG+  +E    L ++E+  ++ RL YVA+TRA+ + + + +   D        
Sbjct: 776  DGRMKRDFGSRAIEHHRALASRESLAENLRLFYVALTRAERRCIFFTARIVDGRQSGRTP 835

Query: 711  XXXXXXXXDSVVPDRATPAKITDE--------DAWDRFQQWQA----AGG-----PTVEE 753
                      V  +     ++  E        DA +  ++ Q+    +GG     P   +
Sbjct: 836  MLSPSSYLLYVSDEARQSPRVIGEAQHELAALDAGEMAERLQSMSDESGGAIRLRPLSLD 895

Query: 754  SVXXXXXXXXXXXXXSELATRRFDRGIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDE 813
                                R F   I+  WR  S++ L R           E+ +RD+ 
Sbjct: 896  DDLTLPLVRTAAAASPSFVLREFTASIETDWRIASFTTLSRHRHMAF-----ELPDRDES 950

Query: 814  VAEVPLTEVVMSGPEQPSPMADLPSGAKFGSLVHAVLETSD-PFAIDLAAELESQIRVQS 872
              E          P+    +   P GA  G L+H++ ET D  FA +   + E+ +R   
Sbjct: 951  APEQQAAAAPAVLPDTDRSIFAFPKGAGAGILMHSIFETLDFAFATESVID-EASVRALD 1009

Query: 873  AWWXXXXXXXXXXXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXX 932
             +                +                +       E++F FPL         
Sbjct: 1010 RYGYDRHWQPCLTGMVRQVLSTPLSSPEGSFTLGGLRQGSWSTELEFFFPLRHVTSP--- 1066

Query: 933  XXXXXLRLADVGALLRAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGP 992
                  RL+++        + +DP A         AL    ++G L G +D V       
Sbjct: 1067 ------RLSELLMRHGVIPNGADPAAAL------QALDFTPVKGMLMGFMDMVFEAEG-- 1112

Query: 993  GQRYLVVDYKTNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQP 1052
              RY ++D+K+N LG+         YHR  L +AM  + Y LQ LLYTV L RFL  R P
Sbjct: 1113 --RYYLLDWKSNHLGN-----AVEAYHRDHLGKAMQENLYRLQYLLYTVALDRFLSLRVP 1165

Query: 1053 GYDPARHLGGVLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDLL 1103
            GY    H GG +Y+F+RG+         G   G F   PP AL+  L +LL
Sbjct: 1166 GYRYETHFGGAIYVFLRGVSAE-----RGEEYGFFRDLPPEALIRELQELL 1211



 Score = 77.0 bits (188), Expect = 1e-11
 Identities = 54/163 (33%), Positives = 82/163 (50%), Gaps = 11/163 (6%)

Query: 12  AENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELRERVRCQMV 71
           A +   ++EASAGTGKT+A+ +L  R + E   R +++L++T+  AA++EL  R+R ++ 
Sbjct: 12  ALSGMNLIEASAGTGKTWAITSLYLRLLLEKELRPEQILVVTYTEAATRELHARIRRRIR 71

Query: 72  DAVRVFHDSRNGSDDADPAGDNQLLAHLLD--GTAAERDARQQRLRDALAGFDAATIATT 129
            A+    D+  G    DP  D+  L  L +    A E +     L  ALA FD A+I T 
Sbjct: 72  QAL----DAMRG----DPT-DDAFLVGLCERAAEAGEEERAALLLEAALAEFDTASIFTI 122

Query: 130 HQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHF 172
           H FC   L+             LV D   L  E++DD +   F
Sbjct: 123 HGFCNRALQDHAFESGALYDTELVTDQSALAREVIDDFWRERF 165


>tr|Q8KDI1|Q8KDI1_CHLTE Tax_Id=1097 (recB)SubName:
            Full=Exodeoxyribonuclease V, beta subunit;[Chlorobium
            tepidum]
          Length = 1199

 Score =  245 bits (625), Expect = 3e-62
 Identities = 246/885 (27%), Positives = 363/885 (41%), Gaps = 105/885 (11%)

Query: 260  MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGR-CTLILIGDPKQAIYAFRGGDIVTYLHAA 318
            ++ R+   ++DEFQDTD VQ+ +    ++     L LIGDPKQAIY+FRG DI  Y  AA
Sbjct: 369  LRNRYKAALIDEFQDTDPVQYDIFRRIYANSDAPLFLIGDPKQAIYSFRGADIFAYFQAA 428

Query: 319  QTAGDKR--TLATNWRSDSALVDRLQVVLRGAE-------LGDPAIVVRDVKAHHQGHRL 369
               G++R  TL TNWRS   L+D    +   A        +  P +V   +    +   L
Sbjct: 429  SDVGEERRFTLNTNWRSTPKLLDGFNRLFDHARQPFVFDGIPSPPLVAGRLIPESE---L 485

Query: 370  AGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASGATFAGRALQ 429
             G P  +                  +L          +  AS +   ++ G   +G    
Sbjct: 486  TGKPPLELCLLDGGEGDG-------SLKSGDATQFAAKACASMVAETISGGTDASG---- 534

Query: 430  ANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXXFDQPHRPGI 489
               IAVIV  H+ AR     L  AGI +V   D  VF+S               P R  +
Sbjct: 535  ---IAVIVRTHQQARLMQATLRKAGIVSVMRSDESVFASIEAEEVRILVTALADPGRETL 591

Query: 490  VRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYAR---ERGVAAIF-EAAQLGGM 545
            VRAA  T  FG   +D+AR      + + E L+E+ DY R   ERG   +  E  +  G+
Sbjct: 592  VRAALVTPIFGLNGSDIARLNSD-ENALVERLQEFRDYHRLWRERGFMVMARELMRREGV 650

Query: 546  SDRVLSW--QEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATERNRR 603
             +R+L+     G+R +T++ H  +LL +  H     +  L  W   +   R    E   R
Sbjct: 651  RERLLATAGSSGERALTNVLHCFELLHREEHARGLGMEGLAAWFGERVATRDSGEEYQIR 710

Query: 604  IDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKDSPDF 663
            ++SD  AV+I+T  VSKGLQYPVV+ PF F     + E+ L HD   R +   G  S   
Sbjct: 711  LESDEPAVKIVTAHVSKGLQYPVVFCPFQFVSGNDKDEVALCHDDAGRMVRDFG--SASL 768

Query: 664  GTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYD----------EPNXXXXXXXX 713
                 L A+E   ++ RL YVA+TRA+ + + + +   D           P         
Sbjct: 769  NRHRTLAARETLAENLRLFYVALTRAERRCIFFTARIVDGRKSGKPPQLTPASYLLYASD 828

Query: 714  XXXXXDSVVPDRATPAK-ITDEDAWDRFQQW--QAAGGPTVEESVXXXXXXXXXXXXXS- 769
                  + V + A   + I  +D  D+ Q+   ++ G   V                 S 
Sbjct: 829  DARRSANPVAEAADELQTIGVDDMADKLQKMAEESDGAMQVRRLSLGDDFHVRVPPAGST 888

Query: 770  ---ELATRRFDRGIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSG 826
               EL  R+F + +D  WR  S++ L R  +        E+ +RD+     P   +++  
Sbjct: 889  ERPELVLRQFKKILDTDWRIASFTTLSRHKQVAF-----ELPDRDESAPAEPAASILL-- 941

Query: 827  PEQPSPMADLPSGAKFGSLVHAVLETSDPFAIDLAAELESQIRVQ------SAWWXXXXX 880
            PE    +   P GA  G L+H++ ET D FA    A+++               W     
Sbjct: 942  PEAERSIFAFPKGAGAGILMHSIFETLD-FASASCADIDEACAAALDRYGFDKEWQPALA 1000

Query: 881  XXXXXXXXXXMHDXXXXXXXXXXXXRQIGLPDR--LREMDFEFPLXXXXXXXXXXXXXXL 938
                      +                 GL  R    E++F FPL               
Sbjct: 1001 SMTREVLATPLSSPNGSFTLG-------GLKPRTWFTELEFFFPLKRITAP--------- 1044

Query: 939  RLADVGALLRAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLV 998
             LA+V          +DP A         AL    ++G L G +D V         RY +
Sbjct: 1045 ELAEVLVRHGVIPTDTDPAAAL------QALDFAPVKGMLMGFMDMVFETQG----RYYL 1094

Query: 999  VDYKTNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPAR 1058
            +D+K+N LG+     +  +Y R +L  AM  + Y LQ LLYTV L RFL  R P Y    
Sbjct: 1095 LDWKSNHLGN-----SVEEYRREQLDRAMTENLYRLQYLLYTVALDRFLSLRVPDYRYET 1149

Query: 1059 HLGGVLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDLL 1103
            H GG +Y+F+RG+         G   G +   P A L+  LS+LL
Sbjct: 1150 HFGGAIYVFLRGVSAE-----RGEAFGFYRDLPSAELIRELSELL 1189



 Score = 82.0 bits (201), Expect = 4e-13
 Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 11/160 (6%)

Query: 18  VLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELRERVRCQMVDAVRVF 77
           ++EASAGTGKT+A+A+L  R + E   R +++L++TF  AA+QELR R+R ++ +A+ V 
Sbjct: 18  LIEASAGTGKTYAIASLYLRLLVEQELRPEQILVVTFTEAATQELRARIRRRIREALDVM 77

Query: 78  HDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQR--LRDALAGFDAATIATTHQFCQL 135
                     +P  D + L  L D T       Q    L  ALA FD A+I T H FC  
Sbjct: 78  R--------GEPTED-EFLVKLRDHTDVTGSTEQAATLLEAALAEFDMASIFTIHGFCLR 128

Query: 136 VLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRD 175
            L+             L++D   L  +++DD +   F  D
Sbjct: 129 ALQDHAFESGALYDTELMDDQSALAGQVIDDFWRERFFGD 168


>tr|A4SEL9|A4SEL9_PROVI Tax_Id=290318 SubName:
            Full=Exodeoxyribonuclease V, beta
            subunit;[Prosthecochloris vibrioformis]
          Length = 1167

 Score =  245 bits (625), Expect = 3e-62
 Identities = 249/889 (28%), Positives = 367/889 (41%), Gaps = 135/889 (15%)

Query: 260  MQQRWPVVMVDEFQDTDAVQWQVIDSAFS-GRCTLILIGDPKQAIYAFRGGDIVTYLHAA 318
            +++RWP  ++DEFQDTDA Q+ +  S +      L LIGDPKQAIY+FRG D+  YL A+
Sbjct: 364  LRRRWPTALIDEFQDTDARQYDIFRSIYEKADGPLFLIGDPKQAIYSFRGADVFAYLKAS 423

Query: 319  QTAGDKR--TLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDVKAHHQGHRLAGAPHND 376
            +   + R  TL  NWRS   L+D   V+   + + DP  +  ++        ++G P  +
Sbjct: 424  RNVEEGRRFTLTHNWRSVPQLLDAFNVLF--SNVPDP-FLFGEISYRSL---VSGTPERE 477

Query: 377  XXXXXXXXXXXXXXXXI-------QN--LPIDILRDHIGRDLASDIGALLASGAT----F 423
                            +       +N    +D         +A +I  LL S        
Sbjct: 478  DRFVVQKDDGRVPLEFLVLDASMKENALFSVDEATGFASEAVAGEIFKLLRSARNGETLI 537

Query: 424  AGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXXFDQ 483
             GR L+A+DIAVIV  H+ A     ALT   I +V   D  VF+S               
Sbjct: 538  GGRPLRADDIAVIVRSHRQAARVRDALTLFAIPSVVRSDRSVFASNEAREIAILLAALVD 597

Query: 484  PHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYAR------ERGVAAIF 537
            P   G +RAA  T   G++ ND+     A+ D  +  + +   +AR      ERG   + 
Sbjct: 598  PSDEGKIRAALITDILGRSGNDIG----AMMDDESLWVPQLHFFARLHSLWIERGFMTMA 653

Query: 538  EAA-QLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGG 596
                +   +  R+LS  EG+R +T+L H  +LL +  H E     AL  W      + G 
Sbjct: 654  TVLLREEDVRRRLLSLAEGERRLTNLLHCIELLHQKEHEEGVGPEALASWFTQNMVEGGQ 713

Query: 597  ATERNR-RIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHI 655
              E  + R+++D  AV+IMT+ VSKGLQ+PVVY PF +N +   R++  FHD G + +  
Sbjct: 714  RDEEYQLRLETDEPAVKIMTIHVSKGLQFPVVYCPFLWNGSPAARDVAAFHDEGDKAVLD 773

Query: 656  GGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRA--QSQVVAWWSPAYDEPNXXXXXXXX 713
             G  S DF     L  +E   +D RL YVA+TRA     VV                   
Sbjct: 774  FG--SEDFEHHLVLSHEEQLAEDIRLLYVALTRAVYSCSVV------------------- 812

Query: 714  XXXXXDSVVPDRATPAKI-------TDEDAWDRFQQWQAAGGPTV--------EESVXXX 758
                   V P R T   +       T E   ++     A G   V          SV   
Sbjct: 813  -------VAPIRKTQTALNHLLQSGTRETLHEQLNHLIARGDGAVGMRTIDQPGASVQPA 865

Query: 759  XXXXXXXXXXSELATRRFDRGIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVP 818
                       E   + F   ID  WR  S+S   R     G  + PE+ +RD+    VP
Sbjct: 866  ALHEAFRRENGEAVRKVFTGRIDRSWRIASFSFFTR-----GSYAHPELPDRDEMQRNVP 920

Query: 819  LTEVVMSGPEQPSP-MADLPSGAKFGSLVHAVLETSD---PFAIDLAAELESQIRVQSAW 874
                   G + P P +   P GA+ G  +H++ ET D   PF  D + E   +  ++ + 
Sbjct: 921  ------DGAKHPGPSIVTFPGGAQAGIFMHSIFETLDFSRPF--DDSTEEGIKNALERSG 972

Query: 875  WXXXXXXXXXXXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXX 934
            +               +                +   + + EM+F FPL           
Sbjct: 973  YHQQWLPVISSMVRTVLSVSLGMEDGSSFTLSDLKPGEWVTEMEFFFPL----------- 1021

Query: 935  XXXLRLADVGALLRAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQ 994
               L    + +L R  L  +              L    +RG L G +D V +     G 
Sbjct: 1022 -RFLTPDHLSSLARTALHPAQ-------------LDFAPVRGMLIGYIDMVFQ----AGG 1063

Query: 995  RYLVVDYKTNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGY 1054
            RY ++D+K+N LG+     +   Y + R+   M    Y LQ LLYTV LHR+L  R P Y
Sbjct: 1064 RYWLLDWKSNHLGE-----SLDSYTKERMEAVMGFHHYDLQYLLYTVALHRYLSVRIPDY 1118

Query: 1055 DPARHLGGVLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDLL 1103
                H GGV+Y+F+RG+         G   G +   P   LV +L+++L
Sbjct: 1119 RYQTHFGGVIYVFLRGV-----DESSGESRGFYRARPSEELVNSLTEIL 1162



 Score = 65.5 bits (158), Expect = 4e-08
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 12  AENSTTVLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELRERVRCQMV 71
           A +   ++EASAGTGKT+AL  L  R + E     + +L++T+  AA++ELR+++R ++ 
Sbjct: 10  ALSGINLVEASAGTGKTYALTELYLRLIIEKELLPESILVVTYTEAATKELRQKIRERIR 69

Query: 72  DAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQ--QRLRDALAGFDAATIATT 129
           D   +          A P    + LA  L   A E+ A +    L +AL   D A++ T 
Sbjct: 70  DTTAML---------ASPLECTKRLAS-LGSLAMEKGAGEVSSLLENALYLLDTASVFTI 119

Query: 130 HQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLY 168
           H FC   L+       +     +  D  EL   IVDD +
Sbjct: 120 HGFCLRALQDNAFESGSLYDTEIAADERELAGSIVDDFW 158


>tr|B3ECZ4|B3ECZ4_CHLL2 Tax_Id=290315 SubName:
            Full=Exodeoxyribonuclease V, beta subunit;[Chlorobium
            limicola]
          Length = 1226

 Score =  244 bits (624), Expect = 4e-62
 Identities = 253/894 (28%), Positives = 373/894 (41%), Gaps = 117/894 (13%)

Query: 260  MQQRWPVVMVDEFQDTDAVQWQVIDSAFSG-RCTLILIGDPKQAIYAFRGGDIVTYLHAA 318
            ++ R+   ++DEFQDTD VQ+ +    ++G    L LIGDPKQAIY+FRG DI  YL AA
Sbjct: 388  LRNRYRAALIDEFQDTDPVQYDIFRRIYAGSEAPLFLIGDPKQAIYSFRGADIFAYLQAA 447

Query: 319  QTAGDKR--TLATNWRSDSALVDRLQVVLRGAE-------LGDPAIVVRDVKAHHQGHRL 369
               G +R  TL TNWRS   L+D   ++   A        +  P +V     A  +  R 
Sbjct: 448  SDVGRERSFTLNTNWRSVPKLLDGFNLLFDSARHPFVFDNIPSPPLV-----AGKELPRD 502

Query: 370  AGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGR-DLASDIGALLASGA------- 421
            A +P                   +  L I +LR   G   L S      A+GA       
Sbjct: 503  AESP-------------------VPPLEICLLRSGDGDGSLKSGESERFAAGACASMVTE 543

Query: 422  TFAGRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXXF 481
            T  G +  A DIAVIV  H+ AR    AL + GI +V   D  VF+S             
Sbjct: 544  TINGGS-DAGDIAVIVRTHRQARMMQTALRECGIVSVMRSDESVFASVEAEEVRILVTAL 602

Query: 482  DQPHRPGIVRAAAATMFFGKTANDLARGGDALTDRVAETLREWADYAR---ERG-VAAIF 537
             +P R  +VRAA  T  FG   +D+AR  D     V E L+++ +Y R   E G +  + 
Sbjct: 603  AEPGRESLVRAALVTPLFGLNGSDIARLNDDENAWV-ERLQQFREYHRLWQECGFMVMVR 661

Query: 538  EAAQLGGMSDRVL--SWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRG 595
            E  +   + +R+L  S   G+R +T++ H  +LL + +H     +  L  W   +   + 
Sbjct: 662  ELMRREAVRERLLALSGSSGERALTNVLHCFELLHREAHSRGLGMEGLVTWFGERVAAKE 721

Query: 596  GATERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHI 655
               E   R++SD  AV+I+T  VSKGLQYP+V+ PF F       ++VLFHD        
Sbjct: 722  PGEEYQIRLESDEPAVRIVTAHVSKGLQYPIVFCPFQFGGGNGSGDVVLFHDD------- 774

Query: 656  GGKDSPDFGT--VER---LGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXX 710
             G+   DFG+  +ER   L ++E   ++ RL YVA+TRA+ + + + +   D        
Sbjct: 775  DGRMKRDFGSRAIERHRALASREFLAENLRLFYVALTRAERRCIFFTARIVDARQSGRTP 834

Query: 711  XXXXXXXXDSVVPDRATPAKITDE--------DAW---DRFQQWQAAGGPTVE------E 753
                      V  + +   ++  E        DA    +R Q      G  +       +
Sbjct: 835  MLSPSSYLLYVSDEASQSPRLIGEAQQELAALDAGTMAERLQNISDESGGAIRLRRLSLD 894

Query: 754  SVXXXXXXXXXXXXXSELATRRFDRGIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDE 813
                              A R F   ++  WR  S++ L R           E+ +RD+ 
Sbjct: 895  DDLTVPLIRTAAADSPSFALREFTASLETDWRIASFTTLSRHHHMAF-----ELPDRDES 949

Query: 814  VAEVPLTEVVMSGPEQPSPMADLPSGAKFGSLVHAVLETSD-PFAIDLAAEL---ESQIR 869
              E          P+    +   P GA  G L+H++ ET D   AID  +E    E+ IR
Sbjct: 950  TPEQQAAAAPAVLPDTDRSIFAFPKGAGAGILMHSIFETLDFANAIDDTSESHIEEASIR 1009

Query: 870  VQSAWWXXXXXXXXXXXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXX 929
                +                +                +       E++F FPL      
Sbjct: 1010 ALDRYGYERHWQPCLTGMVQQVLRTELSSQEGNFTLGGLRQGSWSTELEFFFPLRHVTSP 1069

Query: 930  XXXXXXXXLRLADVGALLRAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIP 989
                     RL+++        + +DP A         AL    ++G L G +D V    
Sbjct: 1070 ---------RLSELLMRHGVIPNGADPAAAL------QALDFTPVKGMLMGFMDMVFEAK 1114

Query: 990  DGPGQRYLVVDYKTNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRW 1049
                 RY ++D+K+N LG+         YHR RL +AM  + Y LQ LLYTV L RFL  
Sbjct: 1115 G----RYYLLDWKSNHLGN-----AVEAYHRERLGKAMQENLYRLQYLLYTVALDRFLSL 1165

Query: 1050 RQPGYDPARHLGGVLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDLL 1103
            R PGY    H GG +Y+F+RG+      +  G   G +   P  AL+  L +LL
Sbjct: 1166 RVPGYRYDTHFGGAIYVFLRGV-----SVERGEEYGFYRDLPSEALIRELQELL 1214



 Score = 77.4 bits (189), Expect = 1e-11
 Identities = 52/157 (33%), Positives = 77/157 (49%), Gaps = 11/157 (7%)

Query: 18  VLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELRERVRCQMVDAVRVF 77
           ++EASAGTGKT+A+ +L  R + E   R +++L++T+  AA++EL  R+R ++  A+   
Sbjct: 18  LIEASAGTGKTWAITSLYLRLLLEKELRPEQILVVTYTEAATRELHARIRRRIRQAL--- 74

Query: 78  HDSRNGSDDADPAGDNQLLAHLLD--GTAAERDARQQRLRDALAGFDAATIATTHQFCQL 135
            D+  G    DP      L  L D    A E +     L  ALA FD A I T H FC  
Sbjct: 75  -DAMRGDPTDDP-----FLIDLCDRAAQAGEEERAALLLEAALAEFDTAAIFTIHGFCNR 128

Query: 136 VLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHF 172
            L+             +V D   L  E++DD +   F
Sbjct: 129 ALQDHAFESGALYDTEIVTDQSALAREVIDDFWRERF 165


>tr|B2JKV3|B2JKV3_BURP8 Tax_Id=391038 SubName:
            Full=Exodeoxyribonuclease V, beta subunit;[Burkholderia
            phymatum]
          Length = 1241

 Score =  243 bits (621), Expect = 8e-62
 Identities = 262/901 (29%), Positives = 367/901 (40%), Gaps = 104/901 (11%)

Query: 260  MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCTLILIGDPKQAIYAFRGGDIVTYLHAAQ 319
            ++ R+P  ++DEFQDTD +Q+ + +  F+ +  L L+GDPKQAIY+FR  D+ TYL A  
Sbjct: 389  LRARYPAALIDEFQDTDPLQFAIFNRIFAPKGPLFLVGDPKQAIYSFRAADLHTYLAARA 448

Query: 320  TAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVR--DVKAHHQGHRLAGAP-HND 376
             A  + TLA N RS + +V+      R  E    A V+   D +    G R        D
Sbjct: 449  KASARYTLAVNQRSTAPVVEACN---RFFEANPKAFVLEGLDYQPVRAGERQRPPLIDRD 505

Query: 377  XXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASG----ATFAGRALQAND 432
                               +  D  R       A++I  LL        T   + L   +
Sbjct: 506  GTAGGDFRAWMLPQGDAALIKRDAQRA-ASEACAAEIVRLLRGAREGHVTIGDKPLAPGN 564

Query: 433  IAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXXFDQPHRPGIVRA 492
            IAV+V+ HK      R L+  G+ +V      VF S             D P     +RA
Sbjct: 565  IAVLVQTHKQGSLIKRVLSAWGVGSVELAQASVFESLDAEQIERVLAAVDTPGDLRRLRA 624

Query: 493  AAATMFFGKTANDLAR---------GGDALTDRV-----AETLREWADYARERGVAAIFE 538
            A A  +FG  A  L R             LT  V      E    +     ERG A ++ 
Sbjct: 625  ALACDWFGLDAASLWRLEHLAESTPAAGELTQTVDAMGWVERFSRYRMLWHERGFAVMWR 684

Query: 539  AAQLG-GMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGA 597
                   ++ R+++  EG+R +T+L H+ +LLQ  +       P LR W+  QRE  GG 
Sbjct: 685  TLMRELHVAQRIVAGAEGERRLTNLNHLAELLQARAATRPGIAPTLR-WIAAQREGAGGG 743

Query: 598  TERNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQE------RELVLFH-DGGT 650
             E   R++SD   VQI+TV  SKGL+Y VV+ PF  +  ++E       +   +H DGGT
Sbjct: 744  EEAQLRLESDRNLVQIVTVHKSKGLEYAVVFCPFLNDGAMREPHPSGLPDAREYHDDGGT 803

Query: 651  RCLHIGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRA--QSQVVAWWSPAYDEPNXXX 708
              LH  G D        R   +E A + +RL YVA+TRA  +  VVA    +        
Sbjct: 804  AVLHY-GCDEEQADLASRQATREQAAERARLIYVALTRAVYRCYVVAGTYLSARSTKESA 862

Query: 709  XXXXXXXXXXDSVVPDRATPAKITDEDAWDRFQQWQA-AGGPTVEES---VXXXXXXXXX 764
                      ++   D    AK  +E A   ++ WQA AGGP        V         
Sbjct: 863  RSVLNWLVAGNAREFDEWL-AKPLEEGA--IYRHWQALAGGPVTVAGLPPVVRREPLESV 919

Query: 765  XXXXSELATRRFDRGIDIRWRRTSYSGLIRMAEATGVSSEPEVTERD-----DEVAEVPL 819
                  L  R   R +   WR TS+S LI     T  +S       +     DE+A++P 
Sbjct: 920  TDSGVRLRARANRRSLREAWRMTSFSSLIAAGSRTDETSASNAVNEEARPDHDELADLPS 979

Query: 820  TE-----VVMSGPEQ--PSPMADLPSGAKFGSLVHAVLETSD-------PFAIDLAAELE 865
                    V + P +     +   P G   G  +H + E +D       P AI+ A    
Sbjct: 980  VSNAPVFDVAAAPVELAADDILSFPRGPAAGECLHRMFELADFSDPGTWPHAIERA---- 1035

Query: 866  SQIRVQSAWWXXXXXXXXXXXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXX 925
              +  + A                 + D              +    RL E++F F    
Sbjct: 1036 --LHERPAPAEPELAQRLPAMMQRLLADIVSTELVPGMTLAALDPKRRLNELEFLF---- 1089

Query: 926  XXXXXXXXXXXXLRLADVGALLRAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSVDAV 985
                        L    + ALL  H         Y D     AL   +LRG++ G +D +
Sbjct: 1090 --------SAASLDFPALRALLVGH--------GYPD----VALDAGALRGFVKGFIDMI 1129

Query: 986  LRIPDGPGQRYLVVDYKTNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHR 1045
            +        R+ V+D+K+N LGD     T   Y    L EAM    Y LQALLYTV LHR
Sbjct: 1130 VEHQG----RFWVIDWKSNHLGD-----TRESYASEPLEEAMASHAYHLQALLYTVALHR 1180

Query: 1046 FLRWRQPGYDPARHLGGVLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDLLDA 1105
            +LR R PGY+  +H+GG LYLFVRG+         GH AGV    P  ALV AL  L+  
Sbjct: 1181 YLRLRIPGYEYEKHMGGYLYLFVRGV--RPAWRDGGHVAGVHVRRPEHALVVALDALMSG 1238

Query: 1106 G 1106
            G
Sbjct: 1239 G 1239



 Score = 76.6 bits (187), Expect = 2e-11
 Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)

Query: 19  LEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELRERVRCQMVDAVRVFH 78
           +EASAGTGKT+ + AL  R + E     D++L++TF +AA+ EL ER+R ++ +  R   
Sbjct: 28  IEASAGTGKTWNICALYVRLLLEKNLSADQILVVTFTKAATAELHERIRGRLAEVQRAI- 86

Query: 79  DSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFDAATIATTHQFCQLVLK 138
               G D  DP         L +    + +A  + +R AL  FD A I T H FCQ  L+
Sbjct: 87  --ETGDDGGDPFIIRLFETTLSEARGVDLEAAAKIVRRALRTFDQAAIHTIHAFCQRALQ 144

Query: 139 SLGVAGDTDAGVTLVEDLDELVTEIVDDLY 168
               A        +  D   L  E+  D +
Sbjct: 145 EAPFAAAMPFAFEMEADDAALRFELAADFW 174


>tr|D0YCI3|D0YCI3_KLEVA Tax_Id=640131 SubName:
            Full=Exodeoxyribonuclease V, beta subunit;
            EC=3.1.11.5;[Klebsiella variicola At-22]
          Length = 1178

 Score =  243 bits (619), Expect = 1e-61
 Identities = 258/880 (29%), Positives = 365/880 (41%), Gaps = 122/880 (13%)

Query: 260  MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGR--CTLILIGDPKQAIYAFRGGDIVTYLHA 317
            ++QR+PV M+DEFQDTD  Q+++    +  +    L+LIGDPKQAIYAFRG DI TY+ A
Sbjct: 374  IRQRFPVAMIDEFQDTDPQQYRIFRRIWRQQPETALLLIGDPKQAIYAFRGADIFTYMKA 433

Query: 318  AQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDVK-------AHHQGHRL- 369
                    TL TNWRS   +V  +    R   L D   + R++        A +QG R  
Sbjct: 434  RGDVAAHYTLDTNWRSSPGMVGSVN---RLFSLSDNPFMFREIPFLPVKAAAKNQGLRFT 490

Query: 370  ---AGAPH-NDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIG-ALLASGATFA 424
               A  P  N                 +  L    +RD +    A   G ALL  G T  
Sbjct: 491  VDAADVPAMNVWLMPGDTVGSGDYQTFMAQLCATQIRDWLS---AGQQGRALLWRGET-- 545

Query: 425  GRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTD-VFSSXXXXXXXXXXXXFDQ 483
             R +QA+DI V+V    +A     AL   GI +VY  + D VF +               
Sbjct: 546  SRPVQASDITVLVRNRLEAAQVREALQTLGIPSVYLSNRDSVFETLEAQELLWLLQAVLA 605

Query: 484  PHRPGIVRAAAATMFFGKTANDLAR--GGDALTDRVAETLREWADYARERGVAAIFEAAQ 541
            P R   +R+A AT  FG TA D+      +   D + E   E+    R+RGV  +  A  
Sbjct: 606  PERENTLRSALATSMFGLTALDIENLNQDEQAWDALVEEFSEYRQIWRQRGVMPMLRALM 665

Query: 542  LGG-MSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
                +++ +L+ + G+R +TD+ H+++LLQ+ + +       +R   +   E    A  +
Sbjct: 666  TARHIAENLLATRGGERRLTDILHISELLQEAASQLESEHALVRWLAQHIAEPDSNAASQ 725

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIG-GKD 659
              R++SD   VQI+T+  SKGL+YP+V+LPF      ++++   +HD  T    +  G+D
Sbjct: 726  QMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI--ARFRKQDQAFYHDRETFAAVLDLGQD 783

Query: 660  SPDFGTVERLGAKEAANDDSRLTYVAMTRAQ---SQVVAWWSPAYDEPNXXXXXXXXXXX 716
                     L   E   +D RL YVA+TRA    S  VA  S      +           
Sbjct: 784  EASL----ELAEAERLAEDLRLLYVALTRAVWHCSLGVAPLSSRKSGNSDFHLSALGRLL 839

Query: 717  XXDSVVPDRATPAKITDEDAWDRFQQ---------WQAAGGPTVEESVXXXXXXXXXXXX 767
                 +      A++ D    D   Q         WQA                      
Sbjct: 840  QAGEAMDAAGLAARLADFCHGDIALQRPGELDLTPWQAPAA------------------T 881

Query: 768  XSELATRRFDRGIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGP 827
               L+ R   R I   WR TSYSGL    +  G S   ++  R D V    + EVV    
Sbjct: 882  IPPLSARELQRRIADDWRVTSYSGL----QQHGFSGGQDLLPRLD-VDAAGVGEVVEEPQ 936

Query: 828  EQPSPMADLPSGAKFGSLVHAVLETSD---PFAIDLAAELESQIRVQSAWWXXXXXXXXX 884
              P      P GA  G+ +H++ E  D   P      AE + Q+    A W         
Sbjct: 937  LTPH---QFPRGAAPGTFLHSLFEELDFTQPVPDGWMAE-KLQLSGFDAQWAPVLTDWLG 992

Query: 885  XXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVG 944
                  +               Q+   D+  EM F  P                    + 
Sbjct: 993  GVLKTRL-------PGADIALNQLAARDKQVEMAFYLP--------------------IA 1025

Query: 945  ALLRAHLDASDPLAPYADRLSGDA--LGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYK 1002
             LL A  +  D L    D LS D   L  + +RG L G +D V R       RY ++DYK
Sbjct: 1026 QLLTA--ERLDALIRQYDPLSADTPPLDFRQVRGMLKGFIDLVFRHEG----RYYLLDYK 1079

Query: 1003 TNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGG 1062
            +NWLG+ DR      Y RP + +AM    Y LQ  LY++ LHR+LR R   YD  RH GG
Sbjct: 1080 SNWLGE-DREA----YTRPAMEQAMRAHRYDLQYQLYSLALHRYLRHRLADYDYDRHFGG 1134

Query: 1063 VLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDL 1102
            V+YLF+RGM G +         G+F+  P   L+  L  L
Sbjct: 1135 VIYLFLRGMDGQEGGQ------GIFTTRPVRPLIDGLDQL 1168



 Score = 62.4 bits (150), Expect = 3e-07
 Identities = 62/196 (31%), Positives = 88/196 (44%), Gaps = 25/196 (12%)

Query: 18  VLEASAGTGKTFALAALVTRYV-------AEGRA-RLDEMLLITFGRAASQELRERVRCQ 69
           ++EASAGTGKTF +AAL  R +       A  RA  ++E+L++TF  AA++ELR R+R  
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGESAYSRAISVEELLVVTFTEAATEELRGRIRSN 79

Query: 70  MVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFDAATIATT 129
           +       H+ R      +   DN L + LL     ++D   + L  A    D A + T 
Sbjct: 80  I-------HELRIACLRGE--SDNPLYSALL-AEIVDKDDAAKTLLLAERQMDEAAVFTI 129

Query: 130 HQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPPLTYRDALRI 189
           H FCQ +L              L+ED   L  +   D +  H        PLT RD   +
Sbjct: 130 HGFCQRMLSLNAFESGMLFEQQLIEDESRLRYQACADFWRRHC------YPLT-RDIAAV 182

Query: 190 ARAVVANPSTQLRPLD 205
              V   P   L+ LD
Sbjct: 183 IHDVWKGPRDLLKSLD 198


>tr|B5XUQ9|B5XUQ9_KLEP3 Tax_Id=507522 (recB)SubName:
            Full=Exodeoxyribonuclease V, beta subunit;
            EC=3.1.11.5;[Klebsiella pneumoniae]
          Length = 1178

 Score =  241 bits (615), Expect = 4e-61
 Identities = 257/880 (29%), Positives = 365/880 (41%), Gaps = 122/880 (13%)

Query: 260  MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGR--CTLILIGDPKQAIYAFRGGDIVTYLHA 317
            ++QR+PV M+DEFQDTD  Q+++    +  +    L+LIGDPKQAIYAFRG DI TY+ A
Sbjct: 374  IRQRFPVAMIDEFQDTDPQQYRIFRRIWRRQPETALLLIGDPKQAIYAFRGADIFTYMKA 433

Query: 318  AQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDVK-------AHHQGHRL- 369
                    TL TNWRS   +V  +    R   L D   + R++        A +QG R  
Sbjct: 434  RGDVTAHYTLDTNWRSSPGMVSSVN---RLFSLSDNPFMFREIPFLPVKAAAKNQGLRFT 490

Query: 370  ---AGAPH-NDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIG-ALLASGATFA 424
               A  P  N                 +  L    +RD +    A   G ALL  G T  
Sbjct: 491  VDAADVPAMNVWLMPGDTVGSGDYQTFMAQLCATQIRDWLS---AGQQGRALLWRGET-- 545

Query: 425  GRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTD-VFSSXXXXXXXXXXXXFDQ 483
             R +QA+DI V+V    +A     AL   GI +VY  + D VF +               
Sbjct: 546  SRPVQASDITVLVRNRLEAAQVREALQTLGIPSVYLSNRDSVFETLEAQELLWLLQAVLA 605

Query: 484  PHRPGIVRAAAATMFFGKTANDLAR--GGDALTDRVAETLREWADYARERGVAAIFEAAQ 541
            P R   +R+A AT  FG TA D+      +   D + E   ++    R+RGV  +  A  
Sbjct: 606  PERENTLRSALATSMFGLTALDIENLNQDEQAWDALVEEFSDYRQIWRQRGVMPMLRALM 665

Query: 542  LGG-MSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
                +++ +L+ + G+R +TD+ H+++LLQ+ + +       +R   +   E    A  +
Sbjct: 666  TARHIAENLLATRGGERRLTDILHISELLQEAASQLESEHALVRWLAQHIAEPDSNAASQ 725

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIG-GKD 659
              R++SD   VQI+T+  SKGL+YP+V+LPF      ++++   +HD  T    +  G+D
Sbjct: 726  QMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI--ARFRKQDQAFYHDRETFAAVLDLGQD 783

Query: 660  SPDFGTVERLGAKEAANDDSRLTYVAMTRAQ---SQVVAWWSPAYDEPNXXXXXXXXXXX 716
                     L   E   +D RL YVA+TRA    S  VA  S      +           
Sbjct: 784  EASL----ELAEAERLAEDLRLLYVALTRAVWHCSLGVAPLSSRKSGNSDFHLSALGRLL 839

Query: 717  XXDSVVPDRATPAKITDEDAWDRFQQ---------WQAAGGPTVEESVXXXXXXXXXXXX 767
                 +      A++ D    D   Q         WQA                      
Sbjct: 840  QAGEAMDAAGLAARLADFCHGDIALQRPGELDLTPWQAPAA------------------T 881

Query: 768  XSELATRRFDRGIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGP 827
               L+ R   R I   WR TSYSGL    +  G S   ++  R D V    + EVV    
Sbjct: 882  IPPLSARELQRRIADDWRVTSYSGL----QQHGFSGGQDLLPRLD-VDAAGVGEVVEEPQ 936

Query: 828  EQPSPMADLPSGAKFGSLVHAVLETSD---PFAIDLAAELESQIRVQSAWWXXXXXXXXX 884
              P      P GA  G+ +H++ E  D   P      AE + Q+    A W         
Sbjct: 937  LTPH---QFPRGAAPGTFLHSLFEELDFTQPVPDGWMAE-KLQLSGFDAQWAPVLTDWLG 992

Query: 885  XXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVG 944
                  +               Q+   D+  EM F  P                    + 
Sbjct: 993  GVLKTRL-------PGADIALNQLAARDKQVEMAFYLP--------------------IA 1025

Query: 945  ALLRAHLDASDPLAPYADRLSGDA--LGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYK 1002
             LL A  +  D L    D LS D   L  + +RG L G +D V R       RY ++DYK
Sbjct: 1026 QLLTA--ERLDALIRQYDPLSADTPPLDFRQVRGMLKGFIDLVFRHEG----RYYLLDYK 1079

Query: 1003 TNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGG 1062
            +NWLG+ DR      Y RP + +AM    Y LQ  LY++ LHR+LR R   YD  RH GG
Sbjct: 1080 SNWLGE-DREA----YTRPAMEQAMRAHRYDLQYQLYSLALHRYLRHRLADYDYDRHFGG 1134

Query: 1063 VLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDL 1102
            V+YLF+RGM G +         G+F+  P   L+  L  L
Sbjct: 1135 VIYLFLRGMDGQEGGQ------GIFTTRPVRPLIDGLDQL 1168



 Score = 61.6 bits (148), Expect = 6e-07
 Identities = 62/196 (31%), Positives = 88/196 (44%), Gaps = 25/196 (12%)

Query: 18  VLEASAGTGKTFALAALVTRYV-------AEGRA-RLDEMLLITFGRAASQELRERVRCQ 69
           ++EASAGTGKTF +AAL  R +       A  RA  ++E+L++TF  AA++ELR R+R  
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGESAYSRAISVEELLVVTFTEAATEELRGRIRSN 79

Query: 70  MVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFDAATIATT 129
           +       H+ R      +   DN L + LL     ++D   + L  A    D A + T 
Sbjct: 80  I-------HELRIACLRGE--SDNPLYSALL-AEIDDKDDAAKTLLLAERQMDEAAVFTI 129

Query: 130 HQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPPLTYRDALRI 189
           H FCQ +L              L+ED   L  +   D +  H        PLT RD   +
Sbjct: 130 HGFCQRMLSLNAFESGMLFEQQLIEDESRLRYQACADFWRRHC------YPLT-RDIAAV 182

Query: 190 ARAVVANPSTQLRPLD 205
              V   P   L+ LD
Sbjct: 183 IHDVWKGPRDLLKSLD 198


>tr|C8SXN0|C8SXN0_KLEPR Tax_Id=667127 (recB)SubName:
            Full=Exodeoxyribonuclease subunit V beta;
            EC=3.1.11.5;[Klebsiella pneumoniae subsp.
            rhinoscleromatis ATCC 13884]
          Length = 1178

 Score =  241 bits (614), Expect = 5e-61
 Identities = 256/880 (29%), Positives = 365/880 (41%), Gaps = 122/880 (13%)

Query: 260  MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGR--CTLILIGDPKQAIYAFRGGDIVTYLHA 317
            ++QR+PV M+DEFQDTD  Q+++    +  +    L+LIGDPKQAIYAFRG DI TY+ A
Sbjct: 374  IRQRFPVAMIDEFQDTDPQQYRIFRRIWRRQPETALLLIGDPKQAIYAFRGADIFTYMKA 433

Query: 318  AQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDVK-------AHHQGHRL- 369
                    TL TNWRS   +V  +    R   L D   +  ++        A ++G R  
Sbjct: 434  RGDVAAHYTLDTNWRSSPGMVGSVN---RLFSLSDNPFMFHEIPFLPVKEAAKNKGLRFT 490

Query: 370  ---AGAPH-NDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIG-ALLASGATFA 424
               A  P  N                 +  L    +RD +    A   G ALL  G T  
Sbjct: 491  VDAADVPAMNVWLMPGDTVGSGDYQTFMAQLCATQIRDWLS---AGQRGRALLWRGET-- 545

Query: 425  GRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTD-VFSSXXXXXXXXXXXXFDQ 483
             R +QA+DI V+V    +A     AL   GI +VY  + D VF +               
Sbjct: 546  SRPVQASDITVLVRNRLEAAQVREALQTLGIPSVYLSNRDSVFETLEAQELLWLLQAVLA 605

Query: 484  PHRPGIVRAAAATMFFGKTANDLAR--GGDALTDRVAETLREWADYARERGVAAIFEAAQ 541
            P R   +R+A AT  FG TA D+      +   D + E   E+    R+RGV  +  A  
Sbjct: 606  PERENTLRSALATSMFGLTALDIENLNQDEQAWDALVEEFSEYRQIWRQRGVMPMLRALM 665

Query: 542  LGG-MSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
                +++ +L+ + G+R +TD+ H+++LLQ+ + +       +R   +   E    A  +
Sbjct: 666  TARHIAENLLATRGGERRLTDILHISELLQEAASQLESEHALVRWLAQHIAEPDSNAASQ 725

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIG-GKD 659
              R++SD   VQI+T+  SKGL+YP+V+LPF      ++++   +HD  T  + +  G+D
Sbjct: 726  QMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI--ARFRKQDQAFYHDRETFAVVLDLGQD 783

Query: 660  SPDFGTVERLGAKEAANDDSRLTYVAMTRAQ---SQVVAWWSPAYDEPNXXXXXXXXXXX 716
                     L   E   +D RL YVA+TRA    S  VA  S      +           
Sbjct: 784  EASL----ELAEAERLAEDLRLLYVALTRAVWHCSLGVAPLSSRKSGNSDFHLSALGRLL 839

Query: 717  XXDSVVPDRATPAKITDEDAWDRFQQ---------WQAAGGPTVEESVXXXXXXXXXXXX 767
                 +      A++ D    D   Q         WQA                      
Sbjct: 840  QAGEAMDAAGLAARLADFCHGDIALQRPGELDLTPWQAPAA------------------T 881

Query: 768  XSELATRRFDRGIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGP 827
               L+ R   R I   WR TSYSGL    +  G S   ++  R D V    + EVV    
Sbjct: 882  IPRLSARELQRRIADDWRVTSYSGL----QQHGFSGGQDLLPRLD-VDAAGVGEVVEEPQ 936

Query: 828  EQPSPMADLPSGAKFGSLVHAVLETSD---PFAIDLAAELESQIRVQSAWWXXXXXXXXX 884
              P      P GA  G+ +H++ E  D   P      AE + Q+    A W         
Sbjct: 937  LTPH---QFPRGAAPGTFLHSLFEELDFTQPVPEGWMAE-KLQLSGFDAQWAPVLTDWLG 992

Query: 885  XXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVG 944
                  +               Q+   D+  EM F  P                    + 
Sbjct: 993  GVLKTRL-------PGPDIALNQLAARDKQVEMAFYLP--------------------IA 1025

Query: 945  ALLRAHLDASDPLAPYADRLSGDA--LGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYK 1002
             LL A  +  D L    D LS D   L  + +RG L G +D V R       RY ++DYK
Sbjct: 1026 QLLTA--ECLDALIRQYDPLSADTPPLDFRQVRGMLKGFIDLVFRHEG----RYYLLDYK 1079

Query: 1003 TNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGG 1062
            +NWLG+ DR      Y RP + +AM    Y LQ  LY++ LHR+LR R   YD  RH GG
Sbjct: 1080 SNWLGE-DREA----YTRPAMEQAMRAHRYDLQYQLYSLALHRYLRHRLADYDYDRHFGG 1134

Query: 1063 VLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDL 1102
            V+YLF+RGM G +         G+F+  P   L+  L  L
Sbjct: 1135 VIYLFLRGMDGQEGGQ------GIFTTRPVRPLIDGLDQL 1168



 Score = 63.2 bits (152), Expect = 2e-07
 Identities = 63/196 (32%), Positives = 89/196 (45%), Gaps = 25/196 (12%)

Query: 18  VLEASAGTGKTFALAALVTRYV-------AEGRA-RLDEMLLITFGRAASQELRERVRCQ 69
           ++EASAGTGKTF +AAL  R +       A  RA  ++E+L++TF  AA++ELR R+R  
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGEAAYPRAISVEELLVVTFTEAATEELRGRIRSN 79

Query: 70  MVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFDAATIATT 129
           +       H+ R      +   DN L + LL    A++D   + L  A    D A + T 
Sbjct: 80  I-------HELRIACLRGE--SDNPLYSALL-AEIADKDDAAKTLLLAERQMDEAAVFTI 129

Query: 130 HQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPPLTYRDALRI 189
           H FCQ +L              L+ED   L  +   D +  H        PLT RD   +
Sbjct: 130 HGFCQRMLSLNAFESGMLFEQQLIEDESRLRYQACADFWRRHC------YPLT-RDIAAV 182

Query: 190 ARAVVANPSTQLRPLD 205
              V   P   L+ LD
Sbjct: 183 IHDVWKGPRDLLKSLD 198


>tr|A6TDF6|A6TDF6_KLEP7 Tax_Id=272620 (recB)SubName: Full=DNA
            helicase, ATP-dependent dsDNA/ssDNA exonuclease V
            subunit, ssDNA endonuclease;[Klebsiella pneumoniae subsp.
            pneumoniae]
          Length = 1178

 Score =  239 bits (611), Expect = 1e-60
 Identities = 256/880 (29%), Positives = 364/880 (41%), Gaps = 122/880 (13%)

Query: 260  MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGR--CTLILIGDPKQAIYAFRGGDIVTYLHA 317
            ++QR+PV M+DEFQDTD  Q+++    +  +    L+LIGDPKQAIYAFRG DI TY+ A
Sbjct: 374  IRQRFPVAMIDEFQDTDPQQYRIFRRIWRRQPETALLLIGDPKQAIYAFRGADIFTYMKA 433

Query: 318  AQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDVK-------AHHQGHRL- 369
                    TL TNWRS   +V  +    R   L D   +  ++        A ++G R  
Sbjct: 434  RGDVAAHYTLDTNWRSSPGMVGSVN---RLFSLSDNPFMFHEIPFLPVKAAAKNKGLRFT 490

Query: 370  ---AGAPH-NDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIG-ALLASGATFA 424
               A  P  N                 +  L    +RD +    A   G ALL  G T  
Sbjct: 491  VDAADVPAMNVWLMPGDTVGSGDYQTFMAQLCATQIRDWLS---AGQQGRALLWRGET-- 545

Query: 425  GRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTD-VFSSXXXXXXXXXXXXFDQ 483
             R +QA+DI V+V    +A     AL   GI +VY  + D VF +               
Sbjct: 546  SRPVQASDITVLVRNRLEAAQVREALQTLGIPSVYLSNRDSVFETLEAQELLWLLQAVLA 605

Query: 484  PHRPGIVRAAAATMFFGKTANDLAR--GGDALTDRVAETLREWADYARERGVAAIFEAAQ 541
            P R   +R+A AT  FG TA D+      +   D + E   E+    R+RGV  +  A  
Sbjct: 606  PERENTLRSALATSMFGLTALDIENLNQDEQAWDALVEEFSEYRQIWRQRGVMPMLRALM 665

Query: 542  LGG-MSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
                +++ +L+ + G+R +TD+ H+++LLQ+ + +       +R   +   E    A  +
Sbjct: 666  TARHIAENLLATRGGERRLTDILHISELLQEAASQLESEHALVRWLAQHIAEPDSNAASQ 725

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIG-GKD 659
              R++SD   VQI+T+  SKGL+YP+V+LPF      ++++   +HD  T    +  G+D
Sbjct: 726  QMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI--ARFRKQDQAFYHDRETFAAVLDLGQD 783

Query: 660  SPDFGTVERLGAKEAANDDSRLTYVAMTRAQ---SQVVAWWSPAYDEPNXXXXXXXXXXX 716
                     L   E   +D RL YVA+TRA    S  VA  S      +           
Sbjct: 784  EASL----ELAEAERLAEDLRLLYVALTRAVWHCSLGVAPLSSRKSGNSDFHLSALGRLL 839

Query: 717  XXDSVVPDRATPAKITDEDAWDRFQQ---------WQAAGGPTVEESVXXXXXXXXXXXX 767
                 +      A++ D    D   Q         WQA                      
Sbjct: 840  QAGEAMDAAGLAARLADFCHGDIALQIPGELDLTPWQAPAA------------------T 881

Query: 768  XSELATRRFDRGIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGP 827
               L+ R   R I   WR TSYSGL    +  G S   ++  R D V    + EVV    
Sbjct: 882  IPRLSARELQRRIADDWRVTSYSGL----QQHGFSGGQDLLPRLD-VDAAGVGEVVEEPQ 936

Query: 828  EQPSPMADLPSGAKFGSLVHAVLETSD---PFAIDLAAELESQIRVQSAWWXXXXXXXXX 884
              P      P GA  G+ +H++ E  D   P      AE + Q+    A W         
Sbjct: 937  LTPH---QFPRGAAPGTFLHSLFEELDFTQPVPEGWMAE-KLQLSGFDAQWAPVLTDWLG 992

Query: 885  XXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVG 944
                  +               Q+   D+  EM F  P                    + 
Sbjct: 993  GVLKTRL-------PGPDIALNQLAARDKQVEMAFYLP--------------------IA 1025

Query: 945  ALLRAHLDASDPLAPYADRLSGDA--LGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYK 1002
             LL A  +  D L    D LS D   L  + +RG L G +D V R       RY ++DYK
Sbjct: 1026 QLLTA--ERLDALIRQYDPLSADTPPLDFRQVRGMLKGFIDLVFRHEG----RYYLLDYK 1079

Query: 1003 TNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGG 1062
            +NWLG+ DR      Y RP + +AM    Y LQ  LY++ LHR+LR R   YD  RH GG
Sbjct: 1080 SNWLGE-DREA----YTRPAMEQAMRAHRYDLQYQLYSLALHRYLRHRLADYDYDRHFGG 1134

Query: 1063 VLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDL 1102
            V+YLF+RGM G +         G+F+  P   L+  L  L
Sbjct: 1135 VIYLFLRGMDGQEGGQ------GIFTTRPVRPLIDGLDQL 1168



 Score = 63.2 bits (152), Expect = 2e-07
 Identities = 63/196 (32%), Positives = 89/196 (45%), Gaps = 25/196 (12%)

Query: 18  VLEASAGTGKTFALAALVTRYV-------AEGRA-RLDEMLLITFGRAASQELRERVRCQ 69
           ++EASAGTGKTF +AAL  R +       A  RA  ++E+L++TF  AA++ELR R+R  
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGEAAYPRAISVEELLVVTFTEAATEELRGRIRSN 79

Query: 70  MVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFDAATIATT 129
           +       H+ R      +   DN L + LL    A++D   + L  A    D A + T 
Sbjct: 80  I-------HELRIACLRGE--SDNPLYSALL-AEIADKDDAAKTLLLAERQMDEAAVFTI 129

Query: 130 HQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPPLTYRDALRI 189
           H FCQ +L              L+ED   L  +   D +  H        PLT RD   +
Sbjct: 130 HGFCQRMLSLNAFESGMLFEQQLIEDESRLRYQACADFWRRHC------YPLT-RDIAAV 182

Query: 190 ARAVVANPSTQLRPLD 205
              V   P   L+ LD
Sbjct: 183 IHDVWKGPRDLLKSLD 198


>tr|C4WYP5|C4WYP5_KLEPN Tax_Id=484021 (recB)SubName: Full=Exonuclease
            V beta subunit;[Klebsiella pneumoniae NTUH-K2044]
          Length = 1178

 Score =  239 bits (611), Expect = 1e-60
 Identities = 256/880 (29%), Positives = 364/880 (41%), Gaps = 122/880 (13%)

Query: 260  MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGR--CTLILIGDPKQAIYAFRGGDIVTYLHA 317
            ++QR+PV M+DEFQDTD  Q+++    +  +    L+LIGDPKQAIYAFRG DI TY+ A
Sbjct: 374  IRQRFPVAMIDEFQDTDPQQYRIFRRIWRRQPETALLLIGDPKQAIYAFRGADIFTYMKA 433

Query: 318  AQTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDVK-------AHHQGHRL- 369
                    TL TNWRS   +V  +    R   L D   +  ++        A ++G R  
Sbjct: 434  RGDVAAHYTLDTNWRSSPGMVGSVN---RLFSLSDNPFMFHEIPFLPVKAAAKNKGLRFT 490

Query: 370  ---AGAPH-NDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIG-ALLASGATFA 424
               A  P  N                 +  L    +RD +    A   G ALL  G T  
Sbjct: 491  VDAADVPAMNVWLMPGDTVGSGDYQTFMAQLCATQIRDWLS---AGQQGRALLWRGET-- 545

Query: 425  GRALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTD-VFSSXXXXXXXXXXXXFDQ 483
             R +QA+DI V+V    +A     AL   GI +VY  + D VF +               
Sbjct: 546  SRPVQASDITVLVRNRLEAAQVREALQTLGIPSVYLSNRDSVFETLEAQELLWLLQAVLA 605

Query: 484  PHRPGIVRAAAATMFFGKTANDLAR--GGDALTDRVAETLREWADYARERGVAAIFEAAQ 541
            P R   +R+A AT  FG TA D+      +   D + E   E+    R+RGV  +  A  
Sbjct: 606  PERENTLRSALATSMFGLTALDIENLNQDEQAWDALVEEFSEYRQIWRQRGVMPMLRALM 665

Query: 542  LGG-MSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATER 600
                +++ +L+ + G+R +TD+ H+++LLQ+ + +       +R   +   E    A  +
Sbjct: 666  TARHIAENLLATRGGERRLTDILHISELLQEAASQLESEHALVRWLAQHIAEPDSNAASQ 725

Query: 601  NRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIG-GKD 659
              R++SD   VQI+T+  SKGL+YP+V+LPF      ++++   +HD  T    +  G+D
Sbjct: 726  QMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI--ARFRKQDQAFYHDRETFAAVLDLGQD 783

Query: 660  SPDFGTVERLGAKEAANDDSRLTYVAMTRAQ---SQVVAWWSPAYDEPNXXXXXXXXXXX 716
                     L   E   +D RL YVA+TRA    S  VA  S      +           
Sbjct: 784  EASL----ELAEAERLAEDLRLLYVALTRAVWHCSLGVAPLSSRKSGNSDFHLSALGRLL 839

Query: 717  XXDSVVPDRATPAKITDEDAWDRFQQ---------WQAAGGPTVEESVXXXXXXXXXXXX 767
                 +      A++ D    D   Q         WQA                      
Sbjct: 840  QAGEAMDAAGLAARLADFCHGDIALQIPGELDLTPWQAPAA------------------T 881

Query: 768  XSELATRRFDRGIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVMSGP 827
               L+ R   R I   WR TSYSGL    +  G S   ++  R D V    + EVV    
Sbjct: 882  IPRLSARELQRRIADDWRVTSYSGL----QQHGFSGGQDLLPRLD-VDAAGVGEVVEEPQ 936

Query: 828  EQPSPMADLPSGAKFGSLVHAVLETSD---PFAIDLAAELESQIRVQSAWWXXXXXXXXX 884
              P      P GA  G+ +H++ E  D   P      AE + Q+    A W         
Sbjct: 937  LTPH---QFPRGAAPGTFLHSLFEELDFTQPVPEGWMAE-KLQLSGFDAQWAPVLTDWLG 992

Query: 885  XXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXLRLADVG 944
                  +               Q+   D+  EM F  P                    + 
Sbjct: 993  GVLKTRL-------PGPDIALNQLAARDKQVEMAFYLP--------------------IA 1025

Query: 945  ALLRAHLDASDPLAPYADRLSGDA--LGGQSLRGYLSGSVDAVLRIPDGPGQRYLVVDYK 1002
             LL A  +  D L    D LS D   L  + +RG L G +D V R       RY ++DYK
Sbjct: 1026 QLLTA--ERLDALIRQYDPLSADTPPLDFRQVRGMLKGFIDLVFRHEG----RYYLLDYK 1079

Query: 1003 TNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPARHLGG 1062
            +NWLG+ DR      Y RP + +AM    Y LQ  LY++ LHR+LR R   YD  RH GG
Sbjct: 1080 SNWLGE-DREA----YTRPAMEQAMRAHRYDLQYQLYSLALHRYLRHRLADYDYDRHFGG 1134

Query: 1063 VLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDL 1102
            V+YLF+RGM G +         G+F+  P   L+  L  L
Sbjct: 1135 VIYLFLRGMDGQEGGQ------GIFTTRPVRPLIDGLDQL 1168



 Score = 63.2 bits (152), Expect = 2e-07
 Identities = 63/196 (32%), Positives = 89/196 (45%), Gaps = 25/196 (12%)

Query: 18  VLEASAGTGKTFALAALVTRYV-------AEGRA-RLDEMLLITFGRAASQELRERVRCQ 69
           ++EASAGTGKTF +AAL  R +       A  RA  ++E+L++TF  AA++ELR R+R  
Sbjct: 20  LIEASAGTGKTFTIAALYLRLLLGLGGEAAYPRAISVEELLVVTFTEAATEELRGRIRSN 79

Query: 70  MVDAVRVFHDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFDAATIATT 129
           +       H+ R      +   DN L + LL    A++D   + L  A    D A + T 
Sbjct: 80  I-------HELRIACLRGE--SDNPLYSALL-AEIADKDDAAKTLLLAERQMDEAAVFTI 129

Query: 130 HQFCQLVLKSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDDPPLTYRDALRI 189
           H FCQ +L              L+ED   L  +   D +  H        PLT RD   +
Sbjct: 130 HGFCQRMLSLNAFESGMLFEQQLIEDESRLRYQACADFWRRHC------YPLT-RDIAAV 182

Query: 190 ARAVVANPSTQLRPLD 205
              V   P   L+ LD
Sbjct: 183 IHDVWKGPRDLLKSLD 198


>tr|C0N789|C0N789_9GAMM Tax_Id=637616 (recB)SubName:
            Full=Exodeoxyribonuclease V, beta subunit;
            EC=3.1.11.5;[Methylophaga thiooxidans DMS010]
          Length = 1164

 Score =  239 bits (611), Expect = 1e-60
 Identities = 231/881 (26%), Positives = 367/881 (41%), Gaps = 123/881 (13%)

Query: 260  MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGRCT-LILIGDPKQAIYAFRGGDIVTYLHAA 318
            ++Q++   ++DEFQDTD +Q+    + F+   + +  +GDPKQAIY+FRG DI TYL A 
Sbjct: 355  IRQQFQAALIDEFQDTDPIQYDCFRTVFADSGSPVFFVGDPKQAIYSFRGADIFTYLDAK 414

Query: 319  QTAGDKRTLATNWRSDSALVDRLQVVLRGAELGDPAIVVRDVKAHHQGHRLAGAPHNDXX 378
            Q +  +  L TNWRS   LV  +  +    E      +  D+  +         P     
Sbjct: 415  QASQREFNLDTNWRSHPLLVGAVNTLFEQVE---KPFIYDDIPFYPVKAARPDTPALTLS 471

Query: 379  XXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASGATFAGRALQANDI----- 433
                              P++ +      D A + G +L + A     A Q  D+     
Sbjct: 472  KQALP-------------PLEFVWVADDGDKAINKGDMLTTAAN--STASQIADLMQQSS 516

Query: 434  ---AVIVEKHKDARACH------------------RALTDAGIHAVYTGDTDVFSSXXXX 472
                 + +K  D+RA +                  +AL   GI++V     +VF S    
Sbjct: 517  QGEVTLTDKEGDSRALNGGDIAVLVRSHSQATAIQQALRQRGINSVQQSRDNVFKSEQAV 576

Query: 473  XXXXXXXXFDQPHRPGIVRAAAATMFFGKTANDL--ARGGDALTDRVAETLREWADYARE 530
                      +P    ++  A AT  F KTA D+   +  D+L     +  +   D  ++
Sbjct: 577  MLEQVLLAVAKPGNNSLIATALATPIFAKTALDIYQLQQDDSLWLEQTDLFQSLHDSWQQ 636

Query: 531  RGVAAIF-EAAQLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRG 589
             G   +F    +   +  R+L   +G+R +T+L H+ +L+Q  + R   T+ A+  WL G
Sbjct: 637  DGFIVMFRRLMEQLDIQRRILQQSDGERQLTNLMHLAELVQAYASRRNSTIEAILTWLAG 696

Query: 590  QREDRGGATERNR-RIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRN--IQERELVLFH 646
            QR+    A +  + R++SD   V+++T+  SKGL+YP+V+ PF +++    Q+ EL+ FH
Sbjct: 697  QRQASSAAQDMAQIRLESDEQLVKVITIHTSKGLEYPIVFCPFLWHQGKPKQKPELMFFH 756

Query: 647  DGGTR--CLHIGGKDSPDFGTVERLGAKEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEP 704
               T   C+  G    P F   E +   E+  +D RL YVA+TRA+ + V  W  A +  
Sbjct: 757  RDETNQACVAFG---EPGFSEAEPIAEAESRAEDLRLLYVALTRARERCVIIWGAAKNCE 813

Query: 705  NXXXXXXXXXXXXXDSVVPDRATPAKITDEDAWDRFQQWQAAGGPTVEESVXXXXXXXXX 764
            +                  D   PA++  + A    +  +     TV E V         
Sbjct: 814  DTAMFGLLHRDL-------DTLNPAQMHSDLAELSAEHPKFIRLQTVNEEVENAPVKPAT 866

Query: 765  XXXXSELATRRFDRGIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEVPLTEVVM 824
                  L+ R F   I   W+ +S+SGL R              E+ D  A+  L+E   
Sbjct: 867  EV---ALSAREFKGRILPPWQISSFSGLTR----------GHHVEQPDYDADSVLSE-WQ 912

Query: 825  SGPEQPSPMADLPSGAKFGSLVHAVLE------TSDPFAIDLAAELESQIRVQSAWWXXX 878
            +  E        P GA  G+ +H++ E      T D +   L  +  SQ  + + W    
Sbjct: 913  TPVETRHDRFGFPKGANAGTCLHSLFEHWDFQTTGDEWQ-QLIQKTLSQYGIDTDWTDVV 971

Query: 879  XXXXXXXXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXXXXXXXXL 938
                          +              I    RL EM F FP+              L
Sbjct: 972  EHWLPSVVSSPLSTESALTLNC-------ISQDKRLDEMAFYFPV------------SQL 1012

Query: 939  RLADVGALLRAHLDASDPLAPYADRLSGDALGGQSLRGYLSGSVDAVLRIPDGPGQRYLV 998
            +   +   L   +     L    ++L+ +      + G++ G +D +         R+ +
Sbjct: 1013 KAQKLKTTLTGFVTEMPVLKTVLNQLNFN-----DVTGFMKGFIDLIFEFEG----RFYI 1063

Query: 999  VDYKTNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWRQPGYDPAR 1058
             DYK+NWLGD      A DY +  L EAM+   YPLQ L+Y++ LHR+L+ R P YDP +
Sbjct: 1064 ADYKSNWLGD-----KAEDYDKVALDEAMVTHGYPLQYLIYSLALHRYLKIRLPDYDPEQ 1118

Query: 1059 HLGGVLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTAL 1099
            H GGV YLF+RGM        +   AGV+   P AAL+ AL
Sbjct: 1119 HFGGVYYLFIRGM------QAEWGQAGVYFDKPSAALLDAL 1153



 Score = 78.2 bits (191), Expect = 6e-12
 Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 23/154 (14%)

Query: 18  VLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELRERVRCQMVDAVRVF 77
           ++EASAGTGKTF LA L  R + E +  +  +L++T+ RAA++ELR R+R ++V+     
Sbjct: 16  LIEASAGTGKTFTLAELYCRLITEQQLEVKNILVVTYTRAATEELRGRLRKRLVE----- 70

Query: 78  HDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFDAATIATTHQFCQLVL 137
                         + Q L+ L     A  D   +RL+ A+  FD A I T H FCQ  L
Sbjct: 71  --------------ERQKLSQL----DAVDDKVIKRLKLAIQSFDEAAIFTIHGFCQRAL 112

Query: 138 KSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVH 171
           +           V +V D +E+   +VDD +  H
Sbjct: 113 QDFAFESGHAFDVEMVTDEEEIKQAVVDDFWRRH 146


>tr|Q0YQY1|Q0YQY1_9CHLB Tax_Id=377431 SubName:
            Full=Exodeoxyribonuclease V, beta subunit;[Chlorobium
            ferrooxidans DSM 13031]
          Length = 1206

 Score =  238 bits (606), Expect = 5e-60
 Identities = 248/893 (27%), Positives = 364/893 (40%), Gaps = 107/893 (11%)

Query: 260  MQQRWPVVMVDEFQDTDAVQWQVIDSAFSGR-CTLILIGDPKQAIYAFRGGDIVTYLHAA 318
            ++ ++   ++DEFQDTD VQ+++    + G    L LIGDPKQAIY+FRG DI  YL AA
Sbjct: 364  LRTQYRAALIDEFQDTDPVQYEIFRKIYGGSGAPLFLIGDPKQAIYSFRGADIFAYLRAA 423

Query: 319  QTAGDKR--TLATNWRSDSALVDRLQVVLRGAELG--------DPAIVVRDVKAHHQGHR 368
            +   +KR  TL +NWRSDS+L+D    +     L          P       +A     R
Sbjct: 424  EEVEEKRRFTLTSNWRSDSSLLDAFNTIFHQQRLPFLFEGIVYHPLTPGESREASGVVER 483

Query: 369  LAGAPHNDXXXXXXXXXXXXXXXXIQNLPIDILRDHIGRDLASDIGALLASGATFAGR-- 426
              GA                      +              AS+I  LL+ G  F G   
Sbjct: 484  REGAVERPMQICLMDPGNESGTFTTGSA-----ERFAAEACASEIEQLLSDG--FNGSSF 536

Query: 427  ----ALQANDIAVIVEKHKDARACHRALTDAGIHAVYTGDTDVFSSXXXXXXXXXXXXFD 482
                AL A DIAVIV  H+ AR     L   GI  V   D  +F S              
Sbjct: 537  PPDCALNAGDIAVIVRTHRQARMVQSTLRSRGISGVMRSDESIFVSSEAEEVRILLAALS 596

Query: 483  QPHRPGIVRAAAATMFFGKTANDLAR--GGDALTDRVAETLREWADYARERGVAAIF-EA 539
             P    +VR A  T   G + ND+ R    + L     E    +     ERG  A+  E 
Sbjct: 597  DPGAETLVRTALVTDILGLSGNDIDRLNRDETLWIPCLERFHRYHRIWLERGFMAMASEF 656

Query: 540  AQLGGMSDRVLSWQEGQRHMTDLAHVTQLLQKVSHRERYTLPALRDWLRGQREDRGGATE 599
                 +  R+L + +G+R +T++ H  +LL + +   R  + AL  W   +      A E
Sbjct: 657  MSNEAVRARLLRFSDGERRLTNVLHCFELLHREAEERRLGVEALASWFSERIAAGESADE 716

Query: 600  RNRRIDSDAAAVQIMTVWVSKGLQYPVVYLPFAFNRNIQERELVLFHDGGTRCLHIGGKD 659
               R++SD AAV+I+TV VSKGL+YPVV+ PF F      +++V FHD         GK 
Sbjct: 717  YQIRLESDEAAVRIVTVHVSKGLEYPVVFAPFLFGGINAGKDVVQFHDE-------KGKL 769

Query: 660  SPDFGT---VERLGA--KEAANDDSRLTYVAMTRAQSQVVAWWSPAYDEPNXXXXXXXXX 714
              DFG+    E   A  KE   ++ RL YVA+TRA+ +   + +   D            
Sbjct: 770  VKDFGSGTIAENRSAAEKETLAENLRLLYVALTRAKYRCYLFSARVVDGRKKESTLLSPL 829

Query: 715  XXXXDSVVPDRATPAKI-----------TDEDAWDRFQQWQAAGGP---TVEESVXXXXX 760
                 +    + +P  +             E A       +A+GG       E+      
Sbjct: 830  TYLFHASEEAKRSPGLVRAVTESVRALGAGEMAMQLTALAEASGGSIGVRTIEAAEAPPI 889

Query: 761  XXXXXXXXSELAT---RRFDRGIDIRWRRTSYSGLIRMAEATGVSSEPEVTERDDEVAEV 817
                     E+ T     F   I+  WR +S++   R           E+ +RDD    +
Sbjct: 890  KHLPAPGEEEIFTPVVHSFRGHIERLWRVSSFTSFSRHEPKAA-----ELPDRDDREGAM 944

Query: 818  PLTEVVMSGPEQPSPMADLPSGAKFGSLVHAVLETSDPFA------IDLAAELESQIRVQ 871
                  ++G      +   P GA  G ++H++ E  D FA      I L AE        
Sbjct: 945  VQAAPQLNGERS---IFSFPRGAGAGIMMHSIFEKLD-FASPTGETIALLAEQSLARHGF 1000

Query: 872  SAWWXXXXXXXXXXXXXXXMHDXXXXXXXXXXXXRQIGLPDRLREMDFEFPLXXXXXXXX 931
            +  W               +              R       + E++F FPL        
Sbjct: 1001 AGEWLPVLIRMITDTLNTPLSSGTGFFTLGALKPR-----SWVTELEFFFPL-------- 1047

Query: 932  XXXXXXLRLADVGALLRAHLDASDPLAPYADRLS-GDALGGQSLRGYLSGSVDAVLRIPD 990
                  +    +G +L+ +   S+ +    D LS    L  + ++G L G +D V    D
Sbjct: 1048 ----RQVSAKTLGEVLKRYGACSEGV----DLLSVAGVLDFREVKGMLMGFIDMVFE-QD 1098

Query: 991  GPGQRYLVVDYKTNWLGDPDRPLTAADYHRPRLIEAMLHSDYPLQALLYTVVLHRFLRWR 1050
            G   RY ++D+K+N LG+     +  +Y    L  AM  + YPLQ LLY V L+R+L  R
Sbjct: 1099 G---RYYLLDWKSNHLGN-----SVEEYRSDSLRRAMQENLYPLQYLLYIVALNRYLALR 1150

Query: 1051 QPGYDPARHLGGVLYLFVRGMCGPDTPMLDGHPAGVFSWSPPAALVTALSDLL 1103
              GY  A H GGV+Y+F+RG+    +P  +G  AG F   P A L+ AL+D+L
Sbjct: 1151 VAGYTYASHFGGVIYIFLRGV----SPQ-EGESAGFFRDLPSAGLIEALTDIL 1198



 Score = 86.3 bits (212), Expect = 2e-14
 Identities = 58/161 (36%), Positives = 83/161 (51%), Gaps = 8/161 (4%)

Query: 18  VLEASAGTGKTFALAALVTRYVAEGRARLDEMLLITFGRAASQELRERVRCQMVDAVRVF 77
           ++EASAGTGKT+A+A+L  R + E     +++L++T+  AA+QELR R+R ++ +A+   
Sbjct: 18  LIEASAGTGKTYAIASLYLRLLLESGLLPEQILVVTYTEAATQELRSRIRSRIREAL--- 74

Query: 78  HDSRNGSDDADPAGDNQLLAHLLDGTAAERDARQQRLRDALAGFDAATIATTHQFCQLVL 137
            D   G+   DP            GT  E+   +Q    ALA FD A I T H F    L
Sbjct: 75  -DVLEGAGTGDPFLTELSTRAREAGTGREKGVLEQ----ALAAFDTAAIFTIHGFSLRAL 129

Query: 138 KSLGVAGDTDAGVTLVEDLDELVTEIVDDLYLVHFGRDRDD 178
           +       +     LV D  EL+ EIVDD +  HF  D  D
Sbjct: 130 QENAFESGSLYDTELVTDESELLREIVDDFWRHHFFSDTPD 170


  Database: Amellifera_nr
    Posted date:  Feb 5, 2010  5:10 AM
  Number of letters in database: 3,846,993,858
  Number of sequences in database:  11,275,203
  
Lambda     K      H
   0.320    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11275203
Number of Hits to DB: 7,596,096,375
Number of extensions: 304189250
Number of successful extensions: 717231
Number of sequences better than 10.0: 5196
Number of HSP's gapped: 712848
Number of HSP's successfully gapped: 8423
Length of query: 1110
Length of database: 3,846,993,858
Length adjustment: 149
Effective length of query: 961
Effective length of database: 2,166,988,611
Effective search space: 2082476055171
Effective search space used: 2082476055171
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 86 (37.7 bits)