BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_0995 (1176 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|B2HSJ3|RPOB_MYCMM Tax_Id=216594 (rpoB)RecName: Full=DNA-direc... 2203 0.0 sp|A0PM24|RPOB_MYCUA Tax_Id=362242 (rpoB)RecName: Full=DNA-direc... 2200 0.0 sp|P0A680|RPOB_MYCTU Tax_Id=1773 (rpoB)RecName: Full=DNA-directe... 2088 0.0 sp|A1KGE7|RPOB_MYCBP Tax_Id=410289 (rpoB)RecName: Full=DNA-direc... 2088 0.0 sp|P0A681|RPOB_MYCBO Tax_Id=1765 (rpoB)RecName: Full=DNA-directe... 2088 0.0 tr|A4KEZ1|A4KEZ1_MYCTU Tax_Id=395095 RecName: Full=DNA-directed ... 2088 0.0 sp|A5U052|RPOB_MYCTA Tax_Id=419947 (rpoB)RecName: Full=DNA-direc... 2086 0.0 tr|A5WK35|A5WK35_MYCTF Tax_Id=336982 RecName: Full=DNA-directed ... 2085 0.0 tr|C6DU47|C6DU47_MYCTK Tax_Id=478434 RecName: Full=DNA-directed ... 2082 0.0 tr|C1AL00|C1AL00_MYCBT Tax_Id=561275 (rpoB)RecName: Full=DNA-dir... 2080 0.0 sp|P30760|RPOB_MYCLE Tax_Id=1769 (rpoB)RecName: Full=DNA-directe... 2079 0.0 sp|B8ZSC7|RPOB_MYCLB Tax_Id=561304 (rpoB)RecName: Full=DNA-direc... 2079 0.0 sp|Q73SE4|RPOB_MYCPA Tax_Id=1770 (rpoB)RecName: Full=DNA-directe... 2074 0.0 sp|A0QL49|RPOB_MYCA1 Tax_Id=243243 (rpoB)RecName: Full=DNA-direc... 2074 0.0 tr|B0Z0K7|B0Z0K7_9MYCO Tax_Id=480418 (rpoB)RecName: Full=DNA-dir... 2065 0.0 tr|D0EL37|D0EL37_9MYCO Tax_Id=212194 (rpoB)SubName: Full=DNA-dir... 2055 0.0 tr|Q6YI64|Q6YI64_9MYCO Tax_Id=53462 (rpoB)RecName: Full=DNA-dire... 2054 0.0 tr|A1XM12|A1XM12_9MYCO Tax_Id=35617 (rpoB)RecName: Full=DNA-dire... 2054 0.0 tr|Q6X0L1|Q6X0L1_9MYCO Tax_Id=59750 RecName: Full=DNA-directed R... 2053 0.0 tr|C7E3Q1|C7E3Q1_9MYCO Tax_Id=29311 (rpoB)RecName: Full=DNA-dire... 2051 0.0 tr|Q6X0L7|Q6X0L7_9MYCO Tax_Id=39693 RecName: Full=DNA-directed R... 2042 0.0 tr|Q2M4T9|Q2M4T9_9MYCO Tax_Id=319709 (rpoB)RecName: Full=DNA-dir... 2042 0.0 tr|Q2M4U0|Q2M4U0_9MYCO Tax_Id=451644 (rpoB)RecName: Full=DNA-dir... 2041 0.0 tr|Q6X0L8|Q6X0L8_9MYCO Tax_Id=134601 RecName: Full=DNA-directed ... 2041 0.0 tr|Q6YI61|Q6YI61_MYCFO Tax_Id=1766 (rpoB)RecName: Full=DNA-direc... 2040 0.0 tr|Q6X0L6|Q6X0L6_9MYCO Tax_Id=1796 RecName: Full=DNA-directed RN... 2039 0.0 tr|Q6YI60|Q6YI60_MYCFO Tax_Id=1766 (rpoB)RecName: Full=DNA-direc... 2039 0.0 tr|Q6YI68|Q6YI68_MYCFO Tax_Id=1766 (rpoB)RecName: Full=DNA-direc... 2038 0.0 sp|P60281|RPOB_MYCS2 Tax_Id=246196 (rpoB)RecName: Full=DNA-direc... 2037 0.0 tr|Q6YI66|Q6YI66_9MYCO Tax_Id=98668 (rpoB)RecName: Full=DNA-dire... 2036 0.0 tr|Q6X0L9|Q6X0L9_MYCSM Tax_Id=1772 RecName: Full=DNA-directed RN... 2036 0.0 sp|A1T4J2|RPOB_MYCVP Tax_Id=350058 (rpoB)RecName: Full=DNA-direc... 2036 0.0 tr|Q6YI67|Q6YI67_MYCPR Tax_Id=43304 (rpoB)RecName: Full=DNA-dire... 2036 0.0 tr|Q6X0L2|Q6X0L2_9MYCO Tax_Id=1802 RecName: Full=DNA-directed RN... 2034 0.0 sp|A4T1P4|RPOB_MYCGI Tax_Id=350054 (rpoB)RecName: Full=DNA-direc... 2028 0.0 sp|A3PV78|RPOB_MYCSJ Tax_Id=164757 (rpoB)RecName: Full=DNA-direc... 2025 0.0 sp|Q1BDF0|RPOB_MYCSS Tax_Id=164756 (rpoB)RecName: Full=DNA-direc... 2024 0.0 sp|A1UBJ3|RPOB_MYCSK Tax_Id=189918 (rpoB)RecName: Full=DNA-direc... 2024 0.0 tr|Q6YI62|Q6YI62_9MYCO Tax_Id=56689 (rpoB)RecName: Full=DNA-dire... 2004 0.0 tr|Q6YI63|Q6YI63_9MYCO Tax_Id=56689 (rpoB)RecName: Full=DNA-dire... 2002 0.0 tr|Q6YI59|Q6YI59_9MYCO Tax_Id=56689 (rpoB)RecName: Full=DNA-dire... 2002 0.0 tr|Q2M4U2|Q2M4U2_9MYCO Tax_Id=319706 (rpoB)RecName: Full=DNA-dir... 1999 0.0 tr|Q6X0L5|Q6X0L5_9MYCO Tax_Id=83262 RecName: Full=DNA-directed R... 1996 0.0 tr|Q6YI70|Q6YI70_MYCCH Tax_Id=1774 (rpoB)RecName: Full=DNA-direc... 1995 0.0 tr|Q2M4U3|Q2M4U3_9MYCO Tax_Id=319705 (rpoB)RecName: Full=DNA-dir... 1995 0.0 tr|Q5QGG0|Q5QGG0_9MYCO Tax_Id=281216 (rpoB)RecName: Full=DNA-dir... 1994 0.0 tr|Q6X0L3|Q6X0L3_MYCAB Tax_Id=36809 RecName: Full=DNA-directed R... 1994 0.0 tr|Q2M4U1|Q2M4U1_9MYCO Tax_Id=319707 (rpoB)RecName: Full=DNA-dir... 1994 0.0 tr|B1MH62|B1MH62_MYCA9 Tax_Id=561007 RecName: Full=DNA-directed ... 1993 0.0 tr|Q6YI69|Q6YI69_MYCAB Tax_Id=36809 (rpoB)RecName: Full=DNA-dire... 1993 0.0 >sp|B2HSJ3|RPOB_MYCMM Tax_Id=216594 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium marinum] Length = 1176 Score = 2203 bits (5708), Expect = 0.0 Identities = 1120/1176 (95%), Positives = 1121/1176 (95%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE Sbjct: 1 MLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE Sbjct: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINIRP Sbjct: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRP 420 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR Sbjct: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA Sbjct: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKAGVIEEVSADYITVMA 660 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA Sbjct: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 840 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE Sbjct: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN Sbjct: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP Sbjct: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1141 AAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1176 >sp|A0PM24|RPOB_MYCUA Tax_Id=362242 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium ulcerans] Length = 1176 Score = 2200 bits (5701), Expect = 0.0 Identities = 1119/1176 (95%), Positives = 1120/1176 (95%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE Sbjct: 1 MLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMG FPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGGFPMMTEKGTFIINGTERVVVSQLVRS 180 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE Sbjct: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINIRP Sbjct: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRP 420 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR Sbjct: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA Sbjct: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKAGVIEEVSADYITVMA 660 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA Sbjct: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 840 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE Sbjct: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN Sbjct: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP Sbjct: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1141 AAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1176 >sp|P0A680|RPOB_MYCTU Tax_Id=1773 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium tuberculosis] Length = 1178 Score = 2088 bits (5409), Expect = 0.0 Identities = 1064/1178 (90%), Positives = 1084/1178 (92%), Gaps = 2/1178 (0%) Query: 1 VLEGRILADFRQ--TDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 58 +LEG ILAD RQ T AS RPQSSSN+SVPGAPNRVSFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 60 Query: 59 FEWLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVD 118 FEWLIGS RWRESAA+RGD PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPVD Sbjct: 61 FEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVD 120 Query: 119 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 178 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 179 RSPGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 238 RSPGVYFDETIDKSTDK LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 239 LGWSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 298 LGW++EQI ERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 299 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGG 358 FKEKRYDLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQT MT PGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 359 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 418 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 419 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 478 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 479 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHV 538 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHV 540 Query: 539 VAQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 598 VAQANSPIDA GRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 599 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITV 658 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITV 660 Query: 659 MADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLL 718 M D+GTR TYRMRKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCT +GEMALGKNLL Sbjct: 661 MHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLL 720 Query: 719 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 778 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEV 780 Query: 779 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 838 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 839 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 898 HGESGKVIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 899 AEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLP 958 EDMPFL DGTPVDIILNTHGVPRRMNIGQILETHLGW A SGW +D A GVP+WA +LP Sbjct: 901 VEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP 960 Query: 959 ENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFP 1018 + LL AQP++IVSTPVFDGAQEAELQGLLS TLPNRDG+VLVD DGKA LFDGRSGEPFP Sbjct: 961 DELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFP 1020 Query: 1019 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1078 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1079 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1138 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1139 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 DGAAI ANLGINLSRNESASVEDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1178 >sp|A1KGE7|RPOB_MYCBP Tax_Id=410289 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium bovis] Length = 1178 Score = 2088 bits (5409), Expect = 0.0 Identities = 1064/1178 (90%), Positives = 1084/1178 (92%), Gaps = 2/1178 (0%) Query: 1 VLEGRILADFRQ--TDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 58 +LEG ILAD RQ T AS RPQSSSN+SVPGAPNRVSFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 60 Query: 59 FEWLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVD 118 FEWLIGS RWRESAA+RGD PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPVD Sbjct: 61 FEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVD 120 Query: 119 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 178 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 179 RSPGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 238 RSPGVYFDETIDKSTDK LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 239 LGWSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 298 LGW++EQI ERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 299 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGG 358 FKEKRYDLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQT MT PGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 359 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 418 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 419 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 478 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 479 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHV 538 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHV 540 Query: 539 VAQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 598 VAQANSPIDA GRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 599 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITV 658 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITV 660 Query: 659 MADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLL 718 M D+GTR TYRMRKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCT +GEMALGKNLL Sbjct: 661 MHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLL 720 Query: 719 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 778 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEV 780 Query: 779 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 838 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 839 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 898 HGESGKVIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 899 AEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLP 958 EDMPFL DGTPVDIILNTHGVPRRMNIGQILETHLGW A SGW +D A GVP+WA +LP Sbjct: 901 VEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP 960 Query: 959 ENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFP 1018 + LL AQP++IVSTPVFDGAQEAELQGLLS TLPNRDG+VLVD DGKA LFDGRSGEPFP Sbjct: 961 DELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFP 1020 Query: 1019 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1078 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1079 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1138 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1139 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 DGAAI ANLGINLSRNESASVEDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1178 >sp|P0A681|RPOB_MYCBO Tax_Id=1765 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium bovis] Length = 1178 Score = 2088 bits (5409), Expect = 0.0 Identities = 1064/1178 (90%), Positives = 1084/1178 (92%), Gaps = 2/1178 (0%) Query: 1 VLEGRILADFRQ--TDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 58 +LEG ILAD RQ T AS RPQSSSN+SVPGAPNRVSFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 60 Query: 59 FEWLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVD 118 FEWLIGS RWRESAA+RGD PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPVD Sbjct: 61 FEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVD 120 Query: 119 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 178 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 179 RSPGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 238 RSPGVYFDETIDKSTDK LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 239 LGWSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 298 LGW++EQI ERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 299 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGG 358 FKEKRYDLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQT MT PGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 359 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 418 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 419 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 478 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 479 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHV 538 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHV 540 Query: 539 VAQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 598 VAQANSPIDA GRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 599 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITV 658 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITV 660 Query: 659 MADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLL 718 M D+GTR TYRMRKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCT +GEMALGKNLL Sbjct: 661 MHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLL 720 Query: 719 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 778 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEV 780 Query: 779 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 838 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 839 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 898 HGESGKVIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 899 AEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLP 958 EDMPFL DGTPVDIILNTHGVPRRMNIGQILETHLGW A SGW +D A GVP+WA +LP Sbjct: 901 VEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP 960 Query: 959 ENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFP 1018 + LL AQP++IVSTPVFDGAQEAELQGLLS TLPNRDG+VLVD DGKA LFDGRSGEPFP Sbjct: 961 DELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFP 1020 Query: 1019 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1078 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1079 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1138 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1139 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 DGAAI ANLGINLSRNESASVEDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1178 >tr|A4KEZ1|A4KEZ1_MYCTU Tax_Id=395095 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium tuberculosis str. Haarlem] Length = 1178 Score = 2088 bits (5409), Expect = 0.0 Identities = 1064/1178 (90%), Positives = 1084/1178 (92%), Gaps = 2/1178 (0%) Query: 1 VLEGRILADFRQ--TDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 58 +LEG ILAD RQ T AS RPQSSSN+SVPGAPNRVSFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 60 Query: 59 FEWLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVD 118 FEWLIGS RWRESAA+RGD PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPVD Sbjct: 61 FEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVD 120 Query: 119 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 178 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 179 RSPGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 238 RSPGVYFDETIDKSTDK LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 239 LGWSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 298 LGW++EQI ERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 299 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGG 358 FKEKRYDLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQT MT PGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 359 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 418 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 419 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 478 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 479 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHV 538 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHV 540 Query: 539 VAQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 598 VAQANSPIDA GRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 599 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITV 658 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITV 660 Query: 659 MADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLL 718 M D+GTR TYRMRKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCT +GEMALGKNLL Sbjct: 661 MHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLL 720 Query: 719 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 778 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEV 780 Query: 779 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 838 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 839 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 898 HGESGKVIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 899 AEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLP 958 EDMPFL DGTPVDIILNTHGVPRRMNIGQILETHLGW A SGW +D A GVP+WA +LP Sbjct: 901 VEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP 960 Query: 959 ENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFP 1018 + LL AQP++IVSTPVFDGAQEAELQGLLS TLPNRDG+VLVD DGKA LFDGRSGEPFP Sbjct: 961 DELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFP 1020 Query: 1019 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1078 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1079 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1138 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1139 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 DGAAI ANLGINLSRNESASVEDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1178 >sp|A5U052|RPOB_MYCTA Tax_Id=419947 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium tuberculosis] Length = 1177 Score = 2087 bits (5406), Expect = 0.0 Identities = 1063/1177 (90%), Positives = 1083/1177 (92%), Gaps = 2/1177 (0%) Query: 2 LEGRILADFRQ--TDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF 59 +EG ILAD RQ T AS RPQSSSN+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSF Sbjct: 1 MEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSF 60 Query: 60 EWLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDE 119 EWLIGS RWRESAA+RGD PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPVDE Sbjct: 61 EWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDE 120 Query: 120 CKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVR 179 CKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVR Sbjct: 121 CKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVR 180 Query: 180 SPGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL 239 SPGVYFDETIDKSTDK LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL Sbjct: 181 SPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL 240 Query: 240 GWSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFF 299 GW++EQI ERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLFF Sbjct: 241 GWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFF 300 Query: 300 KEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGV 359 KEKRYDLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQT MT PGGV Sbjct: 301 KEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGV 360 Query: 360 EVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIR 419 EVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINIR Sbjct: 361 EVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIR 420 Query: 420 PVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYG 479 PVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYG Sbjct: 421 PVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYG 480 Query: 480 RMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVV 539 RMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHVV Sbjct: 481 RMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVV 540 Query: 540 AQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDD 599 AQANSPIDA GRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDD Sbjct: 541 AQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDD 600 Query: 600 ANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVM 659 ANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVM Sbjct: 601 ANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVM 660 Query: 660 ADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLV 719 D+GTR TYRMRKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCT +GEMALGKNLLV Sbjct: 661 HDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLV 720 Query: 720 AIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVL 779 AIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVL Sbjct: 721 AIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVL 780 Query: 780 ADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPH 839 ADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPH Sbjct: 781 ADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPH 840 Query: 840 GESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPA 899 GESGKVIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 GESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPV 900 Query: 900 EDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPE 959 EDMPFL DGTPVDIILNTHGVPRRMNIGQILETHLGW A SGW +D A GVP+WA +LP+ Sbjct: 901 EDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPD 960 Query: 960 NLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPY 1019 LL AQP++IVSTPVFDGAQEAELQGLLS TLPNRDG+VLVD DGKA LFDGRSGEPFPY Sbjct: 961 ELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPY 1020 Query: 1020 PVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGA 1079 PVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGA Sbjct: 1021 PVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGA 1080 Query: 1080 AYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSD 1139 AYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSD Sbjct: 1081 AYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSD 1140 Query: 1140 GAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 GAAI ANLGINLSRNESASVEDLA Sbjct: 1141 GAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1177 >tr|A5WK35|A5WK35_MYCTF Tax_Id=336982 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium tuberculosis] Length = 1178 Score = 2085 bits (5403), Expect = 0.0 Identities = 1063/1178 (90%), Positives = 1083/1178 (91%), Gaps = 2/1178 (0%) Query: 1 VLEGRILADFRQ--TDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 58 +LEG ILAD RQ T AS RPQSSSN+SVPGAPNRVSFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 60 Query: 59 FEWLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVD 118 FEWLIGS RWRESAA+RGD PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPVD Sbjct: 61 FEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVD 120 Query: 119 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 178 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 179 RSPGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 238 RSPGVYFDETIDKSTDK LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 239 LGWSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 298 LGW++EQI ERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 299 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGG 358 FKEKRYDLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQT MT PGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 359 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 418 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 419 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 478 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRL ALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLLALGPGGLSRERAGLEVRDVHPSHY 480 Query: 479 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHV 538 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHV 540 Query: 539 VAQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 598 VAQANSPIDA GRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 599 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITV 658 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITV 660 Query: 659 MADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLL 718 M D+GTR TYRMRKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCT +GEMALGKNLL Sbjct: 661 MHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLL 720 Query: 719 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 778 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEV 780 Query: 779 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 838 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 839 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 898 HGESGKVIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 899 AEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLP 958 EDMPFL DGTPVDIILNTHGVPRRMNIGQILETHLGW A SGW +D A GVP+WA +LP Sbjct: 901 VEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP 960 Query: 959 ENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFP 1018 + LL AQP++IVSTPVFDGAQEAELQGLLS TLPNRDG+VLVD DGKA LFDGRSGEPFP Sbjct: 961 DELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFP 1020 Query: 1019 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1078 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1079 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1138 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1139 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 DGAAI ANLGINLSRNESASVEDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1178 >tr|C6DU47|C6DU47_MYCTK Tax_Id=478434 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium tuberculosis] Length = 1178 Score = 2082 bits (5395), Expect = 0.0 Identities = 1062/1178 (90%), Positives = 1083/1178 (91%), Gaps = 2/1178 (0%) Query: 1 VLEGRILADFRQ--TDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 58 +LEG ILAD RQ T AS RPQSSSN+SVPGAPNRVSFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 60 Query: 59 FEWLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVD 118 FEWLIGS RWRESAA+RGD PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPVD Sbjct: 61 FEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVD 120 Query: 119 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 178 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 179 RSPGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 238 RSPGVYFDETIDKSTDK LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 239 LGWSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 298 LGW++EQI ERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 299 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGG 358 FKEKRYDLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQT MT PGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGG 360 Query: 359 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 418 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 419 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 478 RPVVAAIKEFFGTSQLSQFM QNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMYQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 479 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHV 538 GRMCPIETPEGP+IGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPSIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHV 540 Query: 539 VAQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 598 VAQANSPIDA GRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 599 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITV 658 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITV 660 Query: 659 MADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLL 718 M D+GTR TYRMRKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCT +GEMALGKNLL Sbjct: 661 MHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLL 720 Query: 719 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 778 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEV 780 Query: 779 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 838 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 839 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 898 HGESGKVIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 899 AEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLP 958 EDMPFL DGTPVDIILNTHGVPRRMNIGQILETHLGW A SGW +D A GVP+WA +LP Sbjct: 901 VEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLP 960 Query: 959 ENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFP 1018 + LL AQP++IVSTPVFDGAQEAELQGLLS TLPNRDG+VLVD DGKA LFDGRSGEPFP Sbjct: 961 DELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFP 1020 Query: 1019 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1078 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1079 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1138 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1139 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 DGAAI ANLGINLSRNESASVEDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1178 >tr|C1AL00|C1AL00_MYCBT Tax_Id=561275 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium bovis] Length = 1172 Score = 2080 bits (5390), Expect = 0.0 Identities = 1059/1172 (90%), Positives = 1079/1172 (92%), Gaps = 2/1172 (0%) Query: 7 LADFRQ--TDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 64 +AD RQ T AS RPQSSSN+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG Sbjct: 1 MADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIG 60 Query: 65 SQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKD 124 S RWRESAA+RGD PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFD+VKAPVDECKDKD Sbjct: 61 SPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKD 120 Query: 125 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 184 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY Sbjct: 121 MTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVY 180 Query: 185 FDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWSNE 244 FDETIDKSTDK LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGW++E Sbjct: 181 FDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSE 240 Query: 245 QIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 304 QI ERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY Sbjct: 241 QIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRY 300 Query: 305 DLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVEVPVE 364 DLARVGRYKVNKKLGL+ G+PITSSTLTEEDVVATIEYLVRLHEGQT MT PGGVEVPVE Sbjct: 301 DLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVE 360 Query: 365 TDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRPVVAA 424 TDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINIRPVVAA Sbjct: 361 TDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAA 420 Query: 425 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 484 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI Sbjct: 421 IKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPI 480 Query: 485 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVAQANS 544 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHVVAQANS Sbjct: 481 ETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANS 540 Query: 545 PIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 604 PIDA GRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL Sbjct: 541 PIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRAL 600 Query: 605 MGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMADDGT 664 MGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVM D+GT Sbjct: 601 MGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGT 660 Query: 665 RHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVAIMPW 724 R TYRMRKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCT +GEMALGKNLLVAIMPW Sbjct: 661 RRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPW 720 Query: 725 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDE 784 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPN+SDEVLADLDE Sbjct: 721 EGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDE 780 Query: 785 RGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGK 844 RGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGESGK Sbjct: 781 RGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGK 840 Query: 845 VIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPF 904 VIGIRVFSRED+DELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPF Sbjct: 841 VIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPF 900 Query: 905 LPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPENLLSA 964 L DGTPVDIILNTHGVPRRMNIGQILETHLGW A SGW +D A GVP+WA +LP+ LL A Sbjct: 901 LADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEA 960 Query: 965 QPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYPVTVG 1024 QP++IVSTPVFDGAQEAELQGLLS TLPNRDG+VLVD DGKA LFDGRSGEPFPYPVTVG Sbjct: 961 QPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVG 1020 Query: 1025 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1084 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ Sbjct: 1021 YMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ 1080 Query: 1085 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIX 1144 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAI Sbjct: 1081 ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE 1140 Query: 1145 XXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 ANLGINLSRNESASVEDLA Sbjct: 1141 LREGEDEDLERAAANLGINLSRNESASVEDLA 1172 >sp|P30760|RPOB_MYCLE Tax_Id=1769 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium leprae] Length = 1178 Score = 2079 bits (5386), Expect = 0.0 Identities = 1059/1178 (89%), Positives = 1082/1178 (91%), Gaps = 2/1178 (0%) Query: 1 VLEGRILADFRQ--TDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 58 +LEG IL DF Q TD S Q RPQSS N+SVPGAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILPDFGQSKTDVSPSQSRPQSSPNNSVPGAPNRISFAKLREPLEVPGLLDVQTDS 60 Query: 59 FEWLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVD 118 FEWLIGS WR +AA RGD PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 Query: 119 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 178 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 179 RSPGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 238 RSPGVYFDETIDKST+K LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 239 LGWSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 298 LGW++EQI ERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 299 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGG 358 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ+ MT PGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 Query: 359 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 418 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 419 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 478 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 479 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHV 538 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 Query: 539 VAQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 598 VAQANSPID GRF+EPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 599 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITV 658 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 Query: 659 MADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLL 718 MADDGTR TYRMRKFARSNHGTCANQSPIVDAG+RVEAGQVIADGPCT+NGEMALGKNLL Sbjct: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 Query: 719 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 778 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 Query: 779 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 838 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 839 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 898 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 899 AEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLP 958 AEDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAKSGW IDVA G+P+WA LP Sbjct: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 Query: 959 ENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFP 1018 E LL A P+ IVSTPVFDGA+E ELQGLLS+TLPNRDG+V+V GDGKA LFDGRSGEPFP Sbjct: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 Query: 1019 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1078 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1079 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1138 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1139 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASIEDLA 1178 >sp|B8ZSC7|RPOB_MYCLB Tax_Id=561304 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium leprae] Length = 1178 Score = 2079 bits (5386), Expect = 0.0 Identities = 1059/1178 (89%), Positives = 1082/1178 (91%), Gaps = 2/1178 (0%) Query: 1 VLEGRILADFRQ--TDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDS 58 +LEG IL DF Q TD S Q RPQSS N+SVPGAPNR+SFAKLREPLEVPGLLDVQTDS Sbjct: 1 MLEGCILPDFGQSKTDVSPSQSRPQSSPNNSVPGAPNRISFAKLREPLEVPGLLDVQTDS 60 Query: 59 FEWLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVD 118 FEWLIGS WR +AA RGD PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPV+ Sbjct: 61 FEWLIGSPCWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVE 120 Query: 119 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 178 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV Sbjct: 121 ECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLV 180 Query: 179 RSPGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 238 RSPGVYFDETIDKST+K LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA Sbjct: 181 RSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKA 240 Query: 239 LGWSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 298 LGW++EQI ERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLF Sbjct: 241 LGWTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLF 300 Query: 299 FKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGG 358 FKEKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ+ MT PGG Sbjct: 301 FKEKRYDLARVGRYKVNKKLGLHAGELITSSTLTEEDVVATIEYLVRLHEGQSTMTVPGG 360 Query: 359 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 418 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINI Sbjct: 361 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINI 420 Query: 419 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 478 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY Sbjct: 421 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 480 Query: 479 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHV 538 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHV Sbjct: 481 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHV 540 Query: 539 VAQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 598 VAQANSPID GRF+EPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 541 VAQANSPIDEAGRFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHD 600 Query: 599 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITV 658 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITV Sbjct: 601 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVVAEKSGVIEEVSADYITV 660 Query: 659 MADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLL 718 MADDGTR TYRMRKFARSNHGTCANQSPIVDAG+RVEAGQVIADGPCT+NGEMALGKNLL Sbjct: 661 MADDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLL 720 Query: 719 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 778 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 721 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 780 Query: 779 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 838 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 781 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 840 Query: 839 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 898 HGESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 841 HGESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 900 Query: 899 AEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLP 958 AEDMPFLPDGTPVDIILNTHGVPRRMN+GQILETHLGWVAKSGW IDVA G+P+WA LP Sbjct: 901 AEDMPFLPDGTPVDIILNTHGVPRRMNVGQILETHLGWVAKSGWKIDVAGGIPDWAVNLP 960 Query: 959 ENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFP 1018 E LL A P+ IVSTPVFDGA+E ELQGLLS+TLPNRDG+V+V GDGKA LFDGRSGEPFP Sbjct: 961 EELLHAAPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVGGDGKAVLFDGRSGEPFP 1020 Query: 1019 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1078 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1021 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1080 Query: 1079 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1138 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1081 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1140 Query: 1139 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 DGAAI ANLGINLSRNESAS+EDLA Sbjct: 1141 DGAAIELREGEDEDLERAAANLGINLSRNESASIEDLA 1178 >sp|Q73SE4|RPOB_MYCPA Tax_Id=1770 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium paratuberculosis] Length = 1175 Score = 2074 bits (5374), Expect = 0.0 Identities = 1063/1182 (89%), Positives = 1080/1182 (91%), Gaps = 13/1182 (1%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSS------VPGAPNRVSFAKLREPLEVPGLLDV 54 +LEG ILADFRQ+ RPQSSSN S VPGAPNRVSFAKLREPLEVPGLLDV Sbjct: 1 MLEGCILADFRQSKTD----RPQSSSNGSSSLNGSVPGAPNRVSFAKLREPLEVPGLLDV 56 Query: 55 QTDSFEWLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVK 114 Q DSFEWLIG+ RWRE+A RGDA P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVK Sbjct: 57 QIDSFEWLIGAPRWREAAIARGDAEPKGGLEEVLDELSPIEDFSGSMSLSFSDPRFDEVK 116 Query: 115 APVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVV 174 APVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVV Sbjct: 117 APVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVV 176 Query: 175 SQLVRSPGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTV 234 SQLVRSPGVYFDETIDKST+K LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTV Sbjct: 177 SQLVRSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTV 236 Query: 235 LLKALGWSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLL 294 LLKALGW+NEQI ERFGFSEIMM TLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLL Sbjct: 237 LLKALGWTNEQITERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLL 296 Query: 295 ENLFFKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMT 354 ENLFFKEKRYDLARVGRYKVNKKLGL+AG+PITSSTLTEEDVVATIEYLVRLHEGQ MT Sbjct: 297 ENLFFKEKRYDLARVGRYKVNKKLGLHAGEPITSSTLTEEDVVATIEYLVRLHEGQPTMT 356 Query: 355 APGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQT 414 PGG+EVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQT Sbjct: 357 VPGGIEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQT 416 Query: 415 LINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH 474 LINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH Sbjct: 417 LINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH 476 Query: 475 PSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEE 534 PSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+DEIHYLTADEE Sbjct: 477 PSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIHYLTADEE 536 Query: 535 DRHVVAQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPF 594 DRHVVAQANSPID +GRF E RVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPF Sbjct: 537 DRHVVAQANSPIDDKGRFAEARVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPF 596 Query: 595 LEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSAD 654 LEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSAD Sbjct: 597 LEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKSGVIEEVSAD 656 Query: 655 YITVMADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALG 714 YITVMADDGTRHTYRMRKF RSNHGTCANQSPIVDAG+RVEAGQVIADGPCT+NGEMALG Sbjct: 657 YITVMADDGTRHTYRMRKFERSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALG 716 Query: 715 KNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNV 774 KNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNV Sbjct: 717 KNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNV 776 Query: 775 SDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTS 834 SDEVLADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTS Sbjct: 777 SDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTS 836 Query: 835 LKVPHGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIG 894 LKVPHGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIG Sbjct: 837 LKVPHGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIG 896 Query: 895 KILPAEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWA 954 KILP EDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNID G PEWA Sbjct: 897 KILPQEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNID---GNPEWA 953 Query: 955 GKLPENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSG 1014 LPE L AQP+ IVSTPVFDGA+E EL G+LS TLPNRDGEV+VDGDGKA LFDGRSG Sbjct: 954 VNLPEELRHAQPNQIVSTPVFDGAKEEELAGMLSCTLPNRDGEVMVDGDGKAVLFDGRSG 1013 Query: 1015 EPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAM 1074 EPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAM Sbjct: 1014 EPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAM 1073 Query: 1075 QAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVE 1134 QAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVE Sbjct: 1074 QAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVE 1133 Query: 1135 VLSSDGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 VLSSDGAAI ANLGINLSRNESASVEDLA Sbjct: 1134 VLSSDGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1175 >sp|A0QL49|RPOB_MYCA1 Tax_Id=243243 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium avium] Length = 1175 Score = 2074 bits (5374), Expect = 0.0 Identities = 1063/1182 (89%), Positives = 1080/1182 (91%), Gaps = 13/1182 (1%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSS------VPGAPNRVSFAKLREPLEVPGLLDV 54 +LEG ILADFRQ+ RPQSSSN S VPGAPNRVSFAKLREPLEVPGLLDV Sbjct: 1 MLEGCILADFRQSKTD----RPQSSSNGSSSLNGSVPGAPNRVSFAKLREPLEVPGLLDV 56 Query: 55 QTDSFEWLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVK 114 Q DSFEWLIG+ RWRE+A RGDA P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVK Sbjct: 57 QIDSFEWLIGAPRWREAAIARGDAEPKGGLEEVLDELSPIEDFSGSMSLSFSDPRFDEVK 116 Query: 115 APVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVV 174 APVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVV Sbjct: 117 APVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVV 176 Query: 175 SQLVRSPGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTV 234 SQLVRSPGVYFDETIDKST+K LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTV Sbjct: 177 SQLVRSPGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTV 236 Query: 235 LLKALGWSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLL 294 LLKALGW+NEQI ERFGFSEIMM TLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLL Sbjct: 237 LLKALGWTNEQITERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLL 296 Query: 295 ENLFFKEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMT 354 ENLFFKEKRYDLARVGRYKVNKKLGL+AG+PITSSTLTEEDVVATIEYLVRLHEGQ MT Sbjct: 297 ENLFFKEKRYDLARVGRYKVNKKLGLHAGEPITSSTLTEEDVVATIEYLVRLHEGQPTMT 356 Query: 355 APGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQT 414 PGG+EVPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQT Sbjct: 357 VPGGIEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQT 416 Query: 415 LINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH 474 LINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH Sbjct: 417 LINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH 476 Query: 475 PSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEE 534 PSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+DEIHYLTADEE Sbjct: 477 PSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDEIHYLTADEE 536 Query: 535 DRHVVAQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPF 594 DRHVVAQANSPID +GRF E RVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPF Sbjct: 537 DRHVVAQANSPIDDKGRFAEARVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPF 596 Query: 595 LEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSAD 654 LEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSAD Sbjct: 597 LEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKSGVIEEVSAD 656 Query: 655 YITVMADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALG 714 YITVMADDGTRHTYRMRKF RSNHGTCANQSPIVDAG+RVEAGQVIADGPCT+NGEMALG Sbjct: 657 YITVMADDGTRHTYRMRKFERSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALG 716 Query: 715 KNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNV 774 KNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNV Sbjct: 717 KNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNV 776 Query: 775 SDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTS 834 SDEVLADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTS Sbjct: 777 SDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTS 836 Query: 835 LKVPHGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIG 894 LKVPHGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIG Sbjct: 837 LKVPHGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIG 896 Query: 895 KILPAEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWA 954 KILP EDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNID G PEWA Sbjct: 897 KILPQEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNID---GNPEWA 953 Query: 955 GKLPENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSG 1014 LPE L AQP+ IVSTPVFDGA+E EL G+LS TLPNRDGEV+VDGDGKA LFDGRSG Sbjct: 954 VNLPEELRHAQPNQIVSTPVFDGAKEEELAGMLSCTLPNRDGEVMVDGDGKAVLFDGRSG 1013 Query: 1015 EPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAM 1074 EPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAM Sbjct: 1014 EPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAM 1073 Query: 1075 QAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVE 1134 QAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVE Sbjct: 1074 QAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVE 1133 Query: 1135 VLSSDGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 VLSSDGAAI ANLGINLSRNESASVEDLA Sbjct: 1134 VLSSDGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1175 >tr|B0Z0K7|B0Z0K7_9MYCO Tax_Id=480418 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium lepromatosis] Length = 1178 Score = 2065 bits (5351), Expect = 0.0 Identities = 1052/1176 (89%), Positives = 1077/1176 (91%), Gaps = 2/1176 (0%) Query: 3 EGRILADFRQ--TDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +G IL DF Q T S Q RPQSS N+SVPGAPNR+SFAKL EPLEVPGLLDVQTDSFE Sbjct: 3 KGCILPDFAQSKTGVSPSQSRPQSSPNNSVPGAPNRISFAKLHEPLEVPGLLDVQTDSFE 62 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WLIGS WR +A RGD PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 63 WLIGSPLWRAAATSRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 122 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVV+SQLVRS Sbjct: 123 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVISQLVRS 182 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDETIDKST+K LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 183 PGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 242 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W++EQI ERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 243 WTSEQITERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 302 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGL+AG+ ITSSTLTEEDVVATIEYLVRLHEGQ+ MT GGVE Sbjct: 303 EKRYDLARVGRYKVNKKLGLHAGEQITSSTLTEEDVVATIEYLVRLHEGQSTMTVLGGVE 362 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 +PVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINIRP Sbjct: 363 LPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRP 422 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR Sbjct: 423 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 482 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEI YLTADEEDRHVVA Sbjct: 483 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIEYLTADEEDRHVVA 542 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSPID G F+EPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 543 QANSPIDKDGCFLEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLEHDDA 602 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 603 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGHVVIAEKSGVIEEVSADYITVMA 662 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDGTR TYRMRKFARSNHGTCANQSPIVDAG+RVEAGQVIADGPCT+NGEMALGKNLLVA Sbjct: 663 DDGTRRTYRMRKFARSNHGTCANQSPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVA 722 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 723 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 782 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 783 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 842 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFS EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE Sbjct: 843 ESGKVIGIRVFSHEDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 902 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGW IDVA G+P+WA LPE Sbjct: 903 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWKIDVAAGMPDWAVNLPEE 962 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 LL A+P+ IVSTPVFDGA+E ELQGLLS+TLPNRDG+V+VDGDGKA LFDGRSGEPFPYP Sbjct: 963 LLHAKPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVDGDGKAVLFDGRSGEPFPYP 1022 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1023 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1082 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1083 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1142 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 A+I ANLGINLSRNESAS+EDLA Sbjct: 1143 ASIELRESEDEDLERAAANLGINLSRNESASIEDLA 1178 >tr|D0EL37|D0EL37_9MYCO Tax_Id=212194 (rpoB)SubName: Full=DNA-directed RNA polymerase subunit beta; EC=2.7.7.6;[Mycobacterium sp. DSM 3803] Length = 1178 Score = 2055 bits (5325), Expect = 0.0 Identities = 1043/1176 (88%), Positives = 1077/1176 (91%), Gaps = 6/1176 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 VLEG ILA Q+ ++ +++N+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE Sbjct: 9 VLEGCILAVSSQSKSA------NATTNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 62 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WL+GS RWR++A RG+ PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 63 WLVGSDRWRQNAVDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 122 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 123 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 182 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDETIDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 183 PGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 242 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W++EQI ERFGFSEIMMGTLEKD+TAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 243 WTSEQIVERFGFSEIMMGTLEKDSTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 302 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQT MT PGGVE Sbjct: 303 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVE 362 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 363 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 422 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGR Sbjct: 423 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHYGR 482 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVV+GVV+D+I YLTADEEDRHVVA Sbjct: 483 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVEGVVTDQIDYLTADEEDRHVVA 542 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSP DA GRF E RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 543 QANSPTDADGRFSEDRVMVRKKGGEVEFVAADQVDYMDVSPRQMVSVATAMIPFLEHDDA 602 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADY+TVMA Sbjct: 603 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSDKAGVIEEVSADYVTVMA 662 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDGTRHTYRMRKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCT+NGEMALGKNLLVA Sbjct: 663 DDGTRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTENGEMALGKNLLVA 722 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 723 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 782 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 783 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 842 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 843 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 902 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNI+VA+G P+WA KLPE Sbjct: 903 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVADGTPDWASKLPEG 962 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 LLSA DSIVSTPVFDGAQE EL GLL +TLPNRDGEV+VDGDGKA LFDGRSGEPFPYP Sbjct: 963 LLSAPADSIVSTPVFDGAQEGELAGLLGSTLPNRDGEVMVDGDGKATLFDGRSGEPFPYP 1022 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1023 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1082 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1083 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1142 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1143 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1178 >tr|Q6YI64|Q6YI64_9MYCO Tax_Id=53462 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium mageritense] Length = 1178 Score = 2054 bits (5322), Expect = 0.0 Identities = 1042/1176 (88%), Positives = 1077/1176 (91%), Gaps = 6/1176 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 VLEG ILA Q+ ++ +++N+SVPGAPNRVS+AKLREPLEVPGLLDVQTDSFE Sbjct: 9 VLEGCILAVSSQSKSA------NATTNNSVPGAPNRVSYAKLREPLEVPGLLDVQTDSFE 62 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WL+GS RWR++A RG+ PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 63 WLVGSDRWRQNAVDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 122 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 123 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 182 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDETIDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 183 PGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 242 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W++EQI ERFGFSEIMMGTLEKD+TAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 243 WTSEQIVERFGFSEIMMGTLEKDSTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 302 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQT MT PGGVE Sbjct: 303 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVE 362 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 363 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 422 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGR Sbjct: 423 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHYGR 482 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVV+GVV+D+I YLTADEEDRHVVA Sbjct: 483 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVEGVVTDQIDYLTADEEDRHVVA 542 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSP DA GRF E RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 543 QANSPTDADGRFSEDRVMVRKKGGEVEFVAADQVDYMDVSPRQMVSVATAMIPFLEHDDA 602 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADY+TVMA Sbjct: 603 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSDKAGVIEEVSADYVTVMA 662 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDGTRHTYRMRKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCT+NGEMALGKNLLVA Sbjct: 663 DDGTRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTENGEMALGKNLLVA 722 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 723 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 782 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 783 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 842 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 843 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 902 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNI+VA+G P+WA KLPE Sbjct: 903 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVADGTPDWASKLPEG 962 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 LLSA DSIVSTPVFDGAQE EL GLL +TLPNRDGEV+VDGDGKA LFDGRSGEPFPYP Sbjct: 963 LLSAPADSIVSTPVFDGAQEGELAGLLGSTLPNRDGEVMVDGDGKATLFDGRSGEPFPYP 1022 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1023 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1082 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1083 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1142 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1143 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1178 >tr|A1XM12|A1XM12_9MYCO Tax_Id=35617 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium indicus pranii] Length = 1148 Score = 2054 bits (5322), Expect = 0.0 Identities = 1046/1151 (90%), Positives = 1064/1151 (92%), Gaps = 7/1151 (0%) Query: 30 VPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSQRWRESAAQRGDA----TPVGGLE 85 +PGAPNRVSFAKLREPLEVPGLLDVQ DSFEWLIG+ RWRE+AA RGD TPVGGLE Sbjct: 1 MPGAPNRVSFAKLREPLEVPGLLDVQIDSFEWLIGAPRWREAAAARGDGKPGVTPVGGLE 60 Query: 86 EVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEI 145 EVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEI Sbjct: 61 EVLLELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEI 120 Query: 146 KSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKLLHSVKVIPS 205 KSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKST+KLLHSVKVIPS Sbjct: 121 KSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTEKLLHSVKVIPS 180 Query: 206 RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWSNEQIHERFGFSEIMMGTLEKDNT 265 RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGW+NEQI ERFGFSEIMM TLEKDNT Sbjct: 181 RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQITERFGFSEIMMSTLEKDNT 240 Query: 266 AGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLNAGQP 325 AGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGL+AG+P Sbjct: 241 AGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHAGEP 300 Query: 326 ITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVEVPVETDDIDHFGNRRLRTVGELIQN 385 ITSSTLTEEDVVATIEYLVRLHEGQ MT PGG+EVPVETDDIDHFGNRRLRTVGELIQN Sbjct: 301 ITSSTLTEEDVVATIEYLVRLHEGQPTMTVPGGIEVPVETDDIDHFGNRRLRTVGELIQN 360 Query: 386 QIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLS 445 QIRVGMS QDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLS Sbjct: 361 QIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLS 420 Query: 446 GLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVN 505 GLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVN Sbjct: 421 GLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVN 480 Query: 506 PFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVAQANSPIDAQGRFVEPRVLVRRKAGE 565 PFGFIETPYRKVVDGVV+DEIHYLTADEEDRHVVAQANSPIDA+GRF E RVLVRRKAGE Sbjct: 481 PFGFIETPYRKVVDGVVTDEIHYLTADEEDRHVVAQANSPIDAKGRFEESRVLVRRKAGE 540 Query: 566 VEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVG 625 VEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVG Sbjct: 541 VEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVG 600 Query: 626 TGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMADDGTRHTYRMRKFARSNHGTCANQS 685 TGMELR EEVSADYITVMADDGTRHTYRMRKF RSNHGTCANQS Sbjct: 601 TGMELRAAIDAGDVVVADKAGVIEEVSADYITVMADDGTRHTYRMRKFERSNHGTCANQS 660 Query: 686 PIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVL 745 PIVDAG+RVEAGQVIADGPCT+NGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVL Sbjct: 661 PIVDAGDRVEAGQVIADGPCTENGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVL 720 Query: 746 TSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVT 805 TSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVT Sbjct: 721 TSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAEVRDGDILVGKVT 780 Query: 806 PKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAGVNE 865 PKG AIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAGVNE Sbjct: 781 PKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAGVNE 840 Query: 866 LVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAEDMPFLPDGTPVDIILNTHGVPRRMN 925 LVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP EDMPFLPDGTPVDIILNTHGVPRRMN Sbjct: 841 LVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPQEDMPFLPDGTPVDIILNTHGVPRRMN 900 Query: 926 IGQILETHLGWVAKSGWNIDVANGVPEWAGKLPENLLSAQPDSIVSTPVFDGAQEAELQG 985 IGQILETHLGWVAKSGWNI+ G P+WA LPE L AQPD IVSTPVFDGA+E EL G Sbjct: 901 IGQILETHLGWVAKSGWNIE---GSPDWAVNLPEELRHAQPDQIVSTPVFDGAKEEELAG 957 Query: 986 LLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTG 1045 +LS TLPNRDGEV+VDGDGK+ LFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTG Sbjct: 958 MLSCTLPNRDGEVMVDGDGKSVLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTG 1017 Query: 1046 PYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIV 1105 PYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIV Sbjct: 1018 PYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIV 1077 Query: 1106 KGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIXXXXXXXXXXXXXXANLGINLS 1165 KGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAI ANLGINLS Sbjct: 1078 KGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLS 1137 Query: 1166 RNESASVEDLA 1176 RNESASVEDLA Sbjct: 1138 RNESASVEDLA 1148 >tr|Q6X0L1|Q6X0L1_9MYCO Tax_Id=59750 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium wolinskyi] Length = 1169 Score = 2053 bits (5318), Expect = 0.0 Identities = 1045/1176 (88%), Positives = 1071/1176 (91%), Gaps = 7/1176 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEG ILA Q+ A+ + +N+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+ Sbjct: 1 MLEGCILAVSSQSTAN-------AITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFD 53 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WL+GS WR+ A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 54 WLVGSDEWRQKAIDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 113 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 114 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 173 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDETIDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 174 PGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 233 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMMGTLEKD+TAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 234 WTNEQIVERFGFSEIMMGTLEKDSTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 293 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQT MT PGGVE Sbjct: 294 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVE 353 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 354 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 413 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGR Sbjct: 414 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGR 473 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I YLTADEEDRHVVA Sbjct: 474 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVA 533 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSPIDA GRF E RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 534 QANSPIDADGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDA 593 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADY+TVMA Sbjct: 594 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKTGVVEEVSADYVTVMA 653 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDGTRHTYRMRKFARSNHGTCANQ PIVDAG+RVE+GQVIADGPCTQNGEMALGKNLLVA Sbjct: 654 DDGTRHTYRMRKFARSNHGTCANQRPIVDAGQRVESGQVIADGPCTQNGEMALGKNLLVA 713 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 714 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 773 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 774 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 833 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 834 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 893 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNIDVA G P+WA KLPE Sbjct: 894 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPDWASKLPEQ 953 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 L SA DSIVSTPVFDGAQE ELQGLL +TLPNRDGEV+VD DGKA LFDGRSGEPFPYP Sbjct: 954 LYSAPADSIVSTPVFDGAQEGELQGLLGSTLPNRDGEVMVDADGKATLFDGRSGEPFPYP 1013 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1014 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1073 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1074 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1133 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1134 AAIEMRDGDDADLERAAANLGINLSRNESASVEDLA 1169 >tr|C7E3Q1|C7E3Q1_9MYCO Tax_Id=29311 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium haemophilum] Length = 1182 Score = 2051 bits (5313), Expect = 0.0 Identities = 1048/1180 (88%), Positives = 1072/1180 (90%), Gaps = 6/1180 (0%) Query: 3 EGRILADFRQ--TDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 EG I DF Q TD S Q RPQSSSN+SVPGAPNR+SFAKLREPLEVPGLLDVQTDSFE Sbjct: 3 EGGIFPDFGQNKTDVSPSQSRPQSSSNNSVPGAPNRISFAKLREPLEVPGLLDVQTDSFE 62 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WLIGS RWR +AA RGD PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 63 WLIGSPRWRAAAASRGDLKPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 122 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 123 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 182 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDETIDKST+K LHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 183 PGVYFDETIDKSTEKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 242 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W++EQI ERFGFSEIM TLEKDNT GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 243 WTSEQIIERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 302 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGL+AG+PITSSTLTEE+VVATIEYLVRLHEGQ+ MT PGGVE Sbjct: 303 EKRYDLARVGRYKVNKKLGLHAGEPITSSTLTEEEVVATIEYLVRLHEGQSTMTVPGGVE 362 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMS QDVEAITPQTLINIRP Sbjct: 363 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRP 422 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR Sbjct: 423 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 482 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGP IGLIGS SVYARVNPFGFIETPYRKVVDGVV+D+I YLTADEEDRHVVA Sbjct: 483 MCPIETPEGPKIGLIGSWSVYARVNPFGFIETPYRKVVDGVVTDDIEYLTADEEDRHVVA 542 Query: 541 QANSPIDAQGR----FVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLE 596 QANSP G F EPRVLVRRKAGEVEYV SSEVDYMDVSPRQMVSVATAMIPFLE Sbjct: 543 QANSPTKDNGAGAQVFAEPRVLVRRKAGEVEYVASSEVDYMDVSPRQMVSVATAMIPFLE 602 Query: 597 HDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYI 656 HDDANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYI Sbjct: 603 HDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKSGVIEEVSADYI 662 Query: 657 TVMADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKN 716 TVMADDGTR TYRMRKFARSNHGTCANQSPIVD+G+RVEAGQVIADGPCT+NGEMALGKN Sbjct: 663 TVMADDGTRRTYRMRKFARSNHGTCANQSPIVDSGDRVEAGQVIADGPCTENGEMALGKN 722 Query: 717 LLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSD 776 LLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSD Sbjct: 723 LLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSD 782 Query: 777 EVLADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLK 836 EVLADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKA EVRDTSLK Sbjct: 783 EVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAPEVRDTSLK 842 Query: 837 VPHGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKI 896 V HGES KVI IRVFSRED+D+ PAGVNELV VYVAQKRKISDGDKLAGRHGNKGVIGKI Sbjct: 843 VAHGESEKVIAIRVFSREDEDDFPAGVNELVGVYVAQKRKISDGDKLAGRHGNKGVIGKI 902 Query: 897 LPAEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGK 956 LPAEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGW IDVA G+PEWA Sbjct: 903 LPAEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWKIDVAGGMPEWAAN 962 Query: 957 LPENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEP 1016 LP LL A+P+ IVSTPVFDGA+E ELQGLLS+TLPNRDG+V+VDGDGKA LFDGRSGEP Sbjct: 963 LPAELLHAEPNQIVSTPVFDGAKEEELQGLLSSTLPNRDGDVMVDGDGKAVLFDGRSGEP 1022 Query: 1017 FPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA 1076 FPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA Sbjct: 1023 FPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA 1082 Query: 1077 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL 1136 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL Sbjct: 1083 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL 1142 Query: 1137 SSDGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 SSDGAAI ANLGINLSRNESASVEDLA Sbjct: 1143 SSDGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA 1182 >tr|Q6X0L7|Q6X0L7_9MYCO Tax_Id=39693 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium porcinum] Length = 1169 Score = 2042 bits (5290), Expect = 0.0 Identities = 1038/1176 (88%), Positives = 1069/1176 (90%), Gaps = 7/1176 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEG ILA Q+ A+ +++N+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+ Sbjct: 1 MLEGCILAVSSQSTAN-------ANTNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFD 53 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WL+GS WR+ A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 54 WLVGSDEWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 113 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 114 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 173 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 174 PGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 233 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMMGTLEKD+TAG DEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 234 WTNEQITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 293 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQT MT PGGVE Sbjct: 294 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVE 353 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 354 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 413 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGR Sbjct: 414 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHYGR 473 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV+DGVVSD+I YLTADEEDRHVVA Sbjct: 474 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVIDGVVSDQIDYLTADEEDRHVVA 533 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSPID GRF E RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 534 QANSPIDNDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDA 593 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 594 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITVMA 653 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDG+RHTYRMRKFARSNHGTCANQ PIVDAG+RVEAGQV+ADGPCT+NGEMALGKNLLVA Sbjct: 654 DDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVA 713 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 714 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 773 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 774 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 833 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 834 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 893 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNIDVA G PEWA KLPE Sbjct: 894 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQ 953 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 L SA DSIVSTPVFDGA+E EL GLL +TLPNRDG+V+VD DGKA LFDGRSGEPFPYP Sbjct: 954 LYSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVDSDGKATLFDGRSGEPFPYP 1013 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMY++KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1014 VTVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1073 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1074 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1133 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1134 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 >tr|Q2M4T9|Q2M4T9_9MYCO Tax_Id=319709 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium barrassiae] Length = 1167 Score = 2042 bits (5290), Expect = 0.0 Identities = 1041/1177 (88%), Positives = 1075/1177 (91%), Gaps = 11/1177 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEG ILA RQ+ +++ +N+SVPGAPNR+SFAKLREPLEVPGLLDVQT+SFE Sbjct: 1 MLEGCILAGSRQSKSAV-------VTNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFE 53 Query: 61 WLIGSQRWRESAAQRGDAT-PVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDE 119 WLIGS RWRE+A RGDA PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDE Sbjct: 54 WLIGSDRWRENAKLRGDAIEPVGGLEEVLTELSPIEDFSGSMSLSFSDPRFDEVKAPVDE 113 Query: 120 CKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVR 179 CKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVR Sbjct: 114 CKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVR 173 Query: 180 SPGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL 239 SPGVYFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL Sbjct: 174 SPGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKAL 233 Query: 240 GWSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFF 299 GW+NEQI ERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFF Sbjct: 234 GWTNEQIVERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFF 293 Query: 300 KEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGV 359 KEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLH+G MTAPGGV Sbjct: 294 KEKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHQGDQTMTAPGGV 353 Query: 360 EVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIR 419 EVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIR Sbjct: 354 EVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIR 413 Query: 420 PVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYG 479 PVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYG Sbjct: 414 PVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYG 473 Query: 480 RMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVV 539 RMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV DGVV+D+I YLTADEEDRHVV Sbjct: 474 RMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVKDGVVTDDIEYLTADEEDRHVV 533 Query: 540 AQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDD 599 AQANSP D +GRF+E RVLVRRK GEVE+V ++EVDYMDVSPRQMVSVATAMIPFLEHDD Sbjct: 534 AQANSPTDEKGRFLEERVLVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDD 593 Query: 600 ANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVM 659 ANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVM Sbjct: 594 ANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKAGVIEEVSADYITVM 653 Query: 660 ADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLV 719 ADDGTRHTYRMRKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCT+NGEMALGKNLLV Sbjct: 654 ADDGTRHTYRMRKFARSNHGTCANQRPIVDAGDRVEAGQVIADGPCTENGEMALGKNLLV 713 Query: 720 AIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVL 779 AIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVL Sbjct: 714 AIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVL 773 Query: 780 ADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPH 839 ADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPH Sbjct: 774 ADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPH 833 Query: 840 GESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPA 899 GESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 834 GESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPV 893 Query: 900 EDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPE 959 EDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGW AK+GW ID G P+WA LPE Sbjct: 894 EDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWAAKAGWKID---GSPDWAANLPE 950 Query: 960 NLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPY 1019 +L +P++IVSTPVFDGA+EAELQGLLSATLPNRDG+ LVDGDGKA+LFDGRSGEPFPY Sbjct: 951 EMLEVEPNTIVSTPVFDGAREAELQGLLSATLPNRDGDTLVDGDGKAQLFDGRSGEPFPY 1010 Query: 1020 PVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGA 1079 PVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGA Sbjct: 1011 PVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGA 1070 Query: 1080 AYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSD 1139 AYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSD Sbjct: 1071 AYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSD 1130 Query: 1140 GAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 GAAI ANLGINLSRNESASVEDLA Sbjct: 1131 GAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1167 >tr|Q2M4U0|Q2M4U0_9MYCO Tax_Id=451644 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium conceptionense] Length = 1170 Score = 2041 bits (5289), Expect = 0.0 Identities = 1038/1176 (88%), Positives = 1069/1176 (90%), Gaps = 6/1176 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEG ILA Q+ ++ + +N+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+ Sbjct: 1 MLEGCILAVSSQSKSA------NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFD 54 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WL+GS WR+ A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 55 WLVGSDEWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 114 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 115 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 174 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 175 PGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 234 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMMGTLEKD+TAG DEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 235 WTNEQITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 294 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQT MT PGGVE Sbjct: 295 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVE 354 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 355 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 414 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGR Sbjct: 415 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHASHYGR 474 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I YLTADEEDRHVVA Sbjct: 475 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVA 534 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSPIDA GRF E RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 535 QANSPIDADGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDA 594 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 595 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITVMA 654 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDG+RHTYRMRKFARSNHGTCANQ PIVDAG+RVEAGQV+ADGPCT+NGEMALGKNLLVA Sbjct: 655 DDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVA 714 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 715 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 774 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 775 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 834 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 835 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 894 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNIDVA G PEWA KLPE Sbjct: 895 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQ 954 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 L SA DSIVSTPVFDGA+E EL GLL +TLPNRDG+V+VD DGKA LFDGRSGEPFPYP Sbjct: 955 LYSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVDSDGKATLFDGRSGEPFPYP 1014 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMY++KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1015 VTVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1074 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1075 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1134 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1135 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1170 >tr|Q6X0L8|Q6X0L8_9MYCO Tax_Id=134601 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium goodii] Length = 1169 Score = 2041 bits (5288), Expect = 0.0 Identities = 1037/1176 (88%), Positives = 1071/1176 (91%), Gaps = 7/1176 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEG ILA Q+ ++ + +N+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE Sbjct: 1 MLEGCILAVSSQSKSN-------AITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 53 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WL+GS RWR++A RG+ PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDEC Sbjct: 54 WLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDEC 113 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 114 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 173 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDETIDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 174 PGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 233 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMMGTLEKD T+GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 234 WTNEQIVERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 293 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLHEGQT MT PGGVE Sbjct: 294 EKRYDLARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVE 353 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 354 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 413 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR Sbjct: 414 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 473 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I YLTADEEDRHVVA Sbjct: 474 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVA 533 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSP D GRF E RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 534 QANSPTDENGRFTEERVMVRKKGGEVEFVSAGQVDYMDVSPRQMVSVATAMIPFLEHDDA 593 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 594 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKTGVIEEVSADYITVMA 653 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDGTR +YR+RKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCTQNGEMALGKNLLVA Sbjct: 654 DDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVA 713 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 714 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 773 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 774 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 833 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 834 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 893 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNIDVA GVP+WA KLPE Sbjct: 894 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEE 953 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 L +A DSIV+TPVFDGAQE EL GLL +TLPNRDGEV+V+ DGKA LFDGRSGEPFPYP Sbjct: 954 LYTAPSDSIVATPVFDGAQEGELAGLLGSTLPNRDGEVMVNADGKATLFDGRSGEPFPYP 1013 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1014 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1073 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1074 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1133 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1134 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 >tr|Q6YI61|Q6YI61_MYCFO Tax_Id=1766 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium fortuitum] Length = 1208 Score = 2040 bits (5285), Expect = 0.0 Identities = 1038/1176 (88%), Positives = 1069/1176 (90%), Gaps = 6/1176 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 VLEG ILA Q+ ++ + +N+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+ Sbjct: 39 VLEGCILAVSSQSKSA------NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFD 92 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WL+G+ WR+ A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 93 WLVGADGWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 152 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 153 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 212 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 213 PGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 272 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMMGTLEKD+TAG DEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 273 WTNEQITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 332 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQT MT PGGVE Sbjct: 333 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVE 392 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 393 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 452 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGR Sbjct: 453 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGR 512 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSD+I YLTADEEDRHVVA Sbjct: 513 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDQIDYLTADEEDRHVVA 572 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSPIDA GRF E RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 573 QANSPIDADGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDA 632 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 633 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITVMA 692 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDG+RHTYRMRKFARSNHGTCANQ PIVDAG+RVEAGQV+ADGPCT+NGEMALGKNLLVA Sbjct: 693 DDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVA 752 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 753 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 812 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 813 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 872 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 873 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 932 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNIDVA G PEWA +LPE Sbjct: 933 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASRLPEQ 992 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 L SA DSIVSTPVFDGA+E EL GLL +TLPNRDG+V+V+ DGKA LFDGRSGEPFPYP Sbjct: 993 LYSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYP 1052 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1053 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1112 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1113 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1172 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1173 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1208 >tr|Q6X0L6|Q6X0L6_9MYCO Tax_Id=1796 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium senegalense] Length = 1170 Score = 2039 bits (5283), Expect = 0.0 Identities = 1037/1176 (88%), Positives = 1068/1176 (90%), Gaps = 6/1176 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEG ILA Q+ ++ + +N+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+ Sbjct: 1 MLEGCILAVSSQSKSA------NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFD 54 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WL+GS WR+ A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 55 WLVGSDEWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 114 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 115 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 174 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 175 PGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 234 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMMGTLEKD+TAG DEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 235 WTNEQITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 294 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQT MT PGGVE Sbjct: 295 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVE 354 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 355 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 414 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGR Sbjct: 415 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGR 474 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I YLTADEEDRHVVA Sbjct: 475 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVA 534 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSPID GRF E RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 535 QANSPIDTDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDA 594 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 595 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITVMA 654 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDG+RHTYRMRKFARSNHGTCANQ PIVDAG+RVEAGQV+ADGPCT+NGEMALGKNLLVA Sbjct: 655 DDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVA 714 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 715 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 774 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 775 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 834 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 835 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 894 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNIDVA G PEWA KLPE Sbjct: 895 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQ 954 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 L SA DSIVSTPVFDGA+E EL GLL +TLPNRDG+V+V+ DGKA LFDGRSGEPFPYP Sbjct: 955 LYSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYP 1014 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1015 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1074 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1075 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1134 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1135 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1170 >tr|Q6YI60|Q6YI60_MYCFO Tax_Id=1766 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium fortuitum] Length = 1177 Score = 2039 bits (5282), Expect = 0.0 Identities = 1037/1176 (88%), Positives = 1068/1176 (90%), Gaps = 6/1176 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 VLEG ILA Q+ ++ + +N+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+ Sbjct: 8 VLEGCILAVSSQSKSA------NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFD 61 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WL+GS WR+ A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 62 WLVGSDEWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 121 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 122 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 181 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 182 PGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 241 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMMGTLEKD+TAG DEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 242 WTNEQITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 301 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQT MT PGGVE Sbjct: 302 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVE 361 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DD+DHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 362 VPVEVDDMDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 421 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGR Sbjct: 422 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGR 481 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I YLTADEEDRHVVA Sbjct: 482 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVA 541 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSPID GRF E RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 542 QANSPIDPDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDA 601 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 602 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGIVEEVSADYITVMA 661 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDG+RHTYRMRKFARSNHGTCANQ PIVDAG+RVEAGQV+ADGPCT+NGEMALGKNLLVA Sbjct: 662 DDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVA 721 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 722 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 781 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 782 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 841 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 842 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 901 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNIDVA G PEWA KLPE Sbjct: 902 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQ 961 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 L SA DSIVSTPVFDGA+E EL GLL +TLPNRDG+V+V+ DGKA LFDGRSGEPFPYP Sbjct: 962 LYSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYP 1021 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1022 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1081 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1082 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1141 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1142 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1177 >tr|Q6YI68|Q6YI68_MYCFO Tax_Id=1766 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium fortuitum] Length = 1170 Score = 2038 bits (5279), Expect = 0.0 Identities = 1036/1176 (88%), Positives = 1068/1176 (90%), Gaps = 6/1176 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEG ILA Q+ ++ + +N+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+ Sbjct: 1 MLEGCILAVSSQSKSA------NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFD 54 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WL+G+ WR+ A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 55 WLVGADEWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 114 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 115 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 174 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 175 PGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 234 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMMGTLEKD+TAG DEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 235 WTNEQITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 294 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQT MT PGGVE Sbjct: 295 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVE 354 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 355 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 414 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGR Sbjct: 415 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGR 474 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I YLTADEEDRHVVA Sbjct: 475 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVA 534 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSPID GRF E RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 535 QANSPIDPDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDA 594 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 595 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGIVEEVSADYITVMA 654 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDG+RHTYRMRKFARSNHGTCANQ PIVDAG+RVEAGQV+ADGPCT+NGEMALGKNLLVA Sbjct: 655 DDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVA 714 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 715 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 774 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 775 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 834 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 835 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 894 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNIDVA G PEWA KLPE Sbjct: 895 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQ 954 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 L SA DSIVSTPVFDGA+E EL GLL +TLPNRDG+V+V+ DGKA LFDGRSGEPFPYP Sbjct: 955 LYSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYP 1014 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1015 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1074 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1075 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1134 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1135 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1170 >sp|P60281|RPOB_MYCS2 Tax_Id=246196 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium smegmatis] Length = 1169 Score = 2037 bits (5278), Expect = 0.0 Identities = 1035/1176 (88%), Positives = 1070/1176 (90%), Gaps = 7/1176 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEG ILA Q+ ++ + +N+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE Sbjct: 1 MLEGCILAVSSQSKSN-------AITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 53 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WL+GS RWR++A RG+ PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDEC Sbjct: 54 WLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDEC 113 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 114 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 173 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDETIDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 174 PGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 233 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMMGTLEKD T+GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 234 WTNEQIVERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 293 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLHEGQT+MT PGGVE Sbjct: 294 EKRYDLARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTVPGGVE 353 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 354 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 413 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR Sbjct: 414 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 473 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I YLTADEEDRHVVA Sbjct: 474 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVA 533 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSP D GRF E RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 534 QANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDA 593 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 594 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKTGVIEEVSADYITVMA 653 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDGTR +YR+RKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCTQNGEMALGKNLLVA Sbjct: 654 DDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVA 713 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 714 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 773 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 774 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 833 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 834 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 893 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNIDVA GVP+WA KLPE Sbjct: 894 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEE 953 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 L SA DS V+TPVFDGAQE EL GLL +TLPNRDGEV+VD DGK+ LFDGRSGEPFPYP Sbjct: 954 LYSAPADSTVATPVFDGAQEGELAGLLGSTLPNRDGEVMVDADGKSTLFDGRSGEPFPYP 1013 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1014 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1073 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1074 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1133 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1134 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 >tr|Q6YI66|Q6YI66_9MYCO Tax_Id=98668 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium septicum] Length = 1185 Score = 2036 bits (5276), Expect = 0.0 Identities = 1035/1176 (88%), Positives = 1069/1176 (90%), Gaps = 7/1176 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 VLEG ILA Q+ A+ +++N+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+ Sbjct: 17 VLEGCILAVSSQSTAN-------ANTNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFD 69 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WL+G+ WR+ A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 70 WLVGADGWRQKAVDRGETNPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 129 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 130 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 189 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFD++IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 190 PGVYFDDSIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 249 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMMGTLEKD+TAG DEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 250 WTNEQIVERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 309 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQT MT PGGVE Sbjct: 310 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVE 369 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 370 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 429 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGR Sbjct: 430 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGR 489 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSD+I YLTADEEDRHVVA Sbjct: 490 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDQIDYLTADEEDRHVVA 549 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSPIDA G F E RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 550 QANSPIDADGSFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDA 609 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 610 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITVMA 669 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDG+RHTYRMRKFARSNHGTCANQ PIVDAG+RVEAGQV+ADGPCT+NGEMALGKNLLVA Sbjct: 670 DDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVA 729 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 730 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 789 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 790 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 849 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 850 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 909 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPF+PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNIDVA G PEWA +LP+ Sbjct: 910 DMPFMPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAEGTPEWASRLPDG 969 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 L SA DSIVSTPVFDGA+E EL GLL +TLPNRDG+V+V+ DGKA LFDGRSGEPFPYP Sbjct: 970 LHSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYP 1029 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1030 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1089 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1090 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1149 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1150 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1185 >tr|Q6X0L9|Q6X0L9_MYCSM Tax_Id=1772 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium smegmatis] Length = 1169 Score = 2036 bits (5276), Expect = 0.0 Identities = 1035/1176 (88%), Positives = 1070/1176 (90%), Gaps = 7/1176 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEG ILA Q+ ++ + +N+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE Sbjct: 1 MLEGCILAVSSQSKSN-------AITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 53 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WL+GS RWR++A RG+ PVGGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKA VDEC Sbjct: 54 WLVGSDRWRQAAIDRGEENPVGGLEEVLAELSPIEDFSGSMSLSFSDPRFDEVKASVDEC 113 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 114 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 173 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDETIDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 174 PGVYFDETIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 233 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMMGTLEKD T+GTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 234 WTNEQIVERFGFSEIMMGTLEKDTTSGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 293 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLNAG+PITSSTLTEEDVVATIEYLVRLHEGQT+MT PGGVE Sbjct: 294 EKRYDLARVGRYKVNKKLGLNAGKPITSSTLTEEDVVATIEYLVRLHEGQTSMTVPGGVE 353 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 354 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 413 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR Sbjct: 414 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 473 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I YLTADEEDRHVVA Sbjct: 474 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVA 533 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSP D GRF E RV+VR+K GEVE+V + +VDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 534 QANSPTDENGRFTEDRVMVRKKGGEVEFVSADQVDYMDVSPRQMVSVATAMIPFLEHDDA 593 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 594 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKTGVIEEVSADYITVMA 653 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDGTR +YR+RKFARSNHGTCANQ PIVDAG+RVEAGQVIADGPCTQNGEMALGKNLLVA Sbjct: 654 DDGTRQSYRLRKFARSNHGTCANQRPIVDAGQRVEAGQVIADGPCTQNGEMALGKNLLVA 713 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 714 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 773 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 774 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 833 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 834 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 893 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNIDVA GVP+WA KLPE Sbjct: 894 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGVPDWASKLPEE 953 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 L SA DS V+TPVFDGAQE EL GLL +TLPNRDGEV+V+ DGKA LFDGRSGEPFPYP Sbjct: 954 LYSAPADSTVATPVFDGAQEGELAGLLGSTLPNRDGEVMVNADGKATLFDGRSGEPFPYP 1013 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1014 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1073 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1074 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1133 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1134 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1169 >sp|A1T4J2|RPOB_MYCVP Tax_Id=350058 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium vanbaalenii] Length = 1167 Score = 2036 bits (5275), Expect = 0.0 Identities = 1033/1176 (87%), Positives = 1067/1176 (90%), Gaps = 9/1176 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEG ILA RQ + S++N+SVPGAPNR+SFAKLREPLEVPGLLDVQT+SFE Sbjct: 1 MLEGCILAGSRQIE---------STTNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFE 51 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WLIG++ W + AA RGD P GGL+EVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 52 WLIGAEDWFQRAADRGDVDPKGGLQEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 111 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 112 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 171 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 172 PGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 231 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMM TLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 232 WTNEQIVERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 291 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLN GQPITSSTLTEEDVVATIEYLVRLH+G MTAPGG E Sbjct: 292 EKRYDLARVGRYKVNKKLGLNVGQPITSSTLTEEDVVATIEYLVRLHQGDQTMTAPGGSE 351 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 352 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 411 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGR Sbjct: 412 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGR 471 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV DGVV+D+I YLTADEEDRHVVA Sbjct: 472 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVTDGVVTDQIDYLTADEEDRHVVA 531 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSP+D G F E RVLVRRK GEVE+V ++EVDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 532 QANSPLDGDGHFEEERVLVRRKGGEVEFVSAAEVDYMDVSPRQMVSVATAMIPFLEHDDA 591 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 592 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVTEKAGVVEEVSADYITVMA 651 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDGTRHTYRMRKFARSNHGTCANQ PIVDAG+RVE+GQV+ADGPCT+NGEMALGKNLLVA Sbjct: 652 DDGTRHTYRMRKFARSNHGTCANQRPIVDAGQRVESGQVLADGPCTENGEMALGKNLLVA 711 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 712 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 771 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGI+RIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 772 DLDERGIIRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 831 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 832 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 891 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNIDVA G PEWA KLPE Sbjct: 892 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWAAKLPEQ 951 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 +LSA DSIV+TPVFDGAQE ELQGLL +TLPNRDGE +V+ DGKA LFDGRSGEPFPYP Sbjct: 952 MLSAPADSIVATPVFDGAQEGELQGLLGSTLPNRDGETMVNADGKATLFDGRSGEPFPYP 1011 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1012 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1071 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1072 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1131 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1132 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1167 >tr|Q6YI67|Q6YI67_MYCPR Tax_Id=43304 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium peregrinum] Length = 1169 Score = 2036 bits (5274), Expect = 0.0 Identities = 1034/1176 (87%), Positives = 1070/1176 (90%), Gaps = 7/1176 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEG ILA Q+ A+ +++N+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+ Sbjct: 1 MLEGCILAVSSQSTAN-------ANTNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFD 53 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WL+G+ WR+ A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 54 WLVGADGWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 113 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 114 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 173 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 174 PGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 233 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W++EQI ERFGFSEIMMGTLEKD+TAG DEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 234 WTSEQITERFGFSEIMMGTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 293 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQT+MT PGGVE Sbjct: 294 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTSMTVPGGVE 353 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 354 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 413 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGR Sbjct: 414 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGR 473 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSD+I YLTADEEDRHVVA Sbjct: 474 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDQIDYLTADEEDRHVVA 533 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSPID GRF E RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 534 QANSPIDTDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDA 593 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 594 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITVMA 653 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDG+RHTYRMRKFARSNHGTCANQ PIVDAG+RVEAGQV+ADGPCT+NGEMALGKNLLVA Sbjct: 654 DDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVA 713 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 714 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 773 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 774 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 833 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 834 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 893 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPF+PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNIDVA G PEWA +LP+ Sbjct: 894 DMPFMPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAEGTPEWASRLPDG 953 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 L SA DSIVSTPVFDGA+E EL GLL +TLPNRDG+V+V+ DGKA LFDGRSGEPFPYP Sbjct: 954 LHSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYP 1013 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1014 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1073 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1074 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1133 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1134 AAIEMRDGDDEDLDRAAANLGINLSRNESASVEDLA 1169 >tr|Q6X0L2|Q6X0L2_9MYCO Tax_Id=1802 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium farcinogenes] Length = 1170 Score = 2035 bits (5271), Expect = 0.0 Identities = 1035/1176 (88%), Positives = 1067/1176 (90%), Gaps = 6/1176 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEG ILA Q+ ++ + +N+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSF+ Sbjct: 1 MLEGCILAVSSQSKSA------NAITNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFD 54 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WL+GS WR+ A RG+ P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 55 WLVGSDEWRQKAVDRGETDPKGGLEEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 114 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 115 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 174 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 175 PGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 234 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMM TLEKD+TAG DEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 235 WTNEQITERFGFSEIMMVTLEKDSTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 294 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQT MT PGGVE Sbjct: 295 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVE 354 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 355 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 414 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGR Sbjct: 415 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGR 474 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I YLTADEEDRHVVA Sbjct: 475 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVA 534 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QAN+PID GRF E RV+VRRK GEVE V S+VDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 535 QANTPIDTDGRFTEDRVMVRRKGGEVENVAPSDVDYMDVSPRQMVSVATAMIPFLEHDDA 594 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 595 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVIVSEKAGVVEEVSADYITVMA 654 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDG+RHTYRMRKFARSNHGTCANQ PIVDAG+RVEAGQV+ADGPCT+NGEMALGKNLLVA Sbjct: 655 DDGSRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTENGEMALGKNLLVA 714 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 715 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 774 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 775 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 834 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 835 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 894 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPEN 960 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNIDVA G PEWA KLPE Sbjct: 895 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIDVAAGTPEWASKLPEQ 954 Query: 961 LLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYP 1020 L SA DSIVSTPVFDGA+E EL GLL +TLPNRDG+V+V+ DGKA LFDGRSGEPFPYP Sbjct: 955 LYSAPVDSIVSTPVFDGAREEELAGLLGSTLPNRDGDVMVNADGKATLFDGRSGEPFPYP 1014 Query: 1021 VTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1080 VTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA Sbjct: 1015 VTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAA 1074 Query: 1081 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1140 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG Sbjct: 1075 YTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDG 1134 Query: 1141 AAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AAI ANLGINLSRNESASVEDLA Sbjct: 1135 AAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1170 >sp|A4T1P4|RPOB_MYCGI Tax_Id=350054 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium gilvum] Length = 1174 Score = 2028 bits (5253), Expect = 0.0 Identities = 1034/1183 (87%), Positives = 1067/1183 (90%), Gaps = 16/1183 (1%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEG ILA RQ + S++N+SVPGAPNR+SFAKLREPLEVPGLLDVQT+SFE Sbjct: 1 MLEGCILAGSRQIE---------STTNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFE 51 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WLIG++ W + A RGD P GGL+EVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 52 WLIGAEDWFQRAVDRGDVDPKGGLQEVLEELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 111 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 112 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 171 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 172 PGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 231 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMM TLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 232 WTNEQIVERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 291 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLN GQPITSSTLTEEDVVATIEYLVRLH+G MTAPGG E Sbjct: 292 EKRYDLARVGRYKVNKKLGLNVGQPITSSTLTEEDVVATIEYLVRLHQGDQTMTAPGGSE 351 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 352 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 411 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGR Sbjct: 412 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGR 471 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSD+I YLTADEEDRHVVA Sbjct: 472 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDQIDYLTADEEDRHVVA 531 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSP+D GRF E RVLVRRK GEVE+V +SEVDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 532 QANSPLDGDGRFEEERVLVRRKGGEVEFVSASEVDYMDVSPRQMVSVATAMIPFLEHDDA 591 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 592 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVTDKAGVVEEVSADYITVMA 651 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDGTRHTYRMRKFARSNHGTCANQ PIVDAG+RVE GQV+ADGPCT+NGEMALGKNLLVA Sbjct: 652 DDGTRHTYRMRKFARSNHGTCANQRPIVDAGQRVETGQVLADGPCTENGEMALGKNLLVA 711 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 712 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 771 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGI+RIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 772 DLDERGIIRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 831 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 832 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 891 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANG-------VPEW 953 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNI +A+ VP W Sbjct: 892 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIRLASDGADGSTEVPAW 951 Query: 954 AGKLPENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRS 1013 A KLPE++LSA DSIV+TPVFDGAQE ELQGLL ATLPNRDGE +V+ DGKA LFDGRS Sbjct: 952 AAKLPEHMLSAPADSIVATPVFDGAQEGELQGLLGATLPNRDGETMVNSDGKAVLFDGRS 1011 Query: 1014 GEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWA 1073 GEPFPYPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWA Sbjct: 1012 GEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWA 1071 Query: 1074 MQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNV 1133 MQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNV Sbjct: 1072 MQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNV 1131 Query: 1134 EVLSSDGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 EVLSSDGAAI ANLGINLSRNESASVEDLA Sbjct: 1132 EVLSSDGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1174 >sp|A3PV78|RPOB_MYCSJ Tax_Id=164757 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium sp.] Length = 1172 Score = 2025 bits (5247), Expect = 0.0 Identities = 1030/1178 (87%), Positives = 1071/1178 (90%), Gaps = 8/1178 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEG ILA Q+ ++ ++ +N+SVPGAPNR+SFAKLREPLEVPGLLDVQT+SF+ Sbjct: 1 MLEGCILAVSSQSKSA------KAITNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFD 54 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WLIG+ WR+ A RGD P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 55 WLIGADSWRQRATARGDVNPTGGLEEVLTELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 114 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 115 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 174 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 175 PGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 234 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMM TLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 235 WTNEQITERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 294 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLN +PITSSTLTEEDVVATIEYLVRLHEGQ MT PGGVE Sbjct: 295 EKRYDLARVGRYKVNKKLGLNTDKPITSSTLTEEDVVATIEYLVRLHEGQATMTVPGGVE 354 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 355 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 414 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGR Sbjct: 415 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGR 474 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I YLTADEEDRHVVA Sbjct: 475 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVA 534 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSP+D +G F E RVLVRRK GEVE+V ++EVDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 535 QANSPLDDEGHFTEDRVLVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDA 594 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 595 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITVMA 654 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDGTRHTYRMRKFARSNHGTCANQ PIVDAG+RVEAGQV+ADGPCTQNGEMALGKNLLVA Sbjct: 655 DDGTRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTQNGEMALGKNLLVA 714 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 715 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 774 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 775 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 834 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 835 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 894 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDV--ANGVPEWAGKLP 958 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNI+V A+GVP+WA KLP Sbjct: 895 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVAGADGVPDWAEKLP 954 Query: 959 ENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFP 1018 E L SA DSIV+TPVFDGA+E EL GLL++TLPNRDG+V+V+ DGKA+LFDGRSGEPFP Sbjct: 955 EELYSAPSDSIVATPVFDGARENELSGLLASTLPNRDGDVMVNEDGKAELFDGRSGEPFP 1014 Query: 1019 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1078 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1015 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1074 Query: 1079 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1138 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1075 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1134 Query: 1139 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 DGAAI ANLGINLSRNESASVEDLA Sbjct: 1135 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1172 >sp|Q1BDF0|RPOB_MYCSS Tax_Id=164756 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium sp.] Length = 1172 Score = 2024 bits (5244), Expect = 0.0 Identities = 1029/1178 (87%), Positives = 1071/1178 (90%), Gaps = 8/1178 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEG ILA Q+ ++ ++ +N+SVPGAPNR+SFAKLREPLEVPGLLDVQT+SF+ Sbjct: 1 MLEGCILAVSSQSKSA------KAITNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFD 54 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WLIG+ WR+ A RGD P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 55 WLIGADSWRQRATARGDVNPTGGLEEVLTELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 114 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 115 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 174 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 175 PGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 234 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMM TLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 235 WTNEQITERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 294 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLN +PITSSTLTEEDVVATIEYLVRLH+G T MT PGGVE Sbjct: 295 EKRYDLARVGRYKVNKKLGLNTDKPITSSTLTEEDVVATIEYLVRLHQGDTVMTVPGGVE 354 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 355 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 414 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGR Sbjct: 415 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGR 474 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I YLTADEEDRHVVA Sbjct: 475 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVA 534 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSP+D +G F E RVLVRRK GEVE+V ++EVDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 535 QANSPLDDEGHFTEDRVLVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDA 594 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 595 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITVMA 654 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDGTRHTYRMRKFARSNHGTCANQ PIVDAG+RVEAGQV+ADGPCTQNGEMALGKNLLVA Sbjct: 655 DDGTRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTQNGEMALGKNLLVA 714 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 715 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 774 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 775 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 834 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 835 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 894 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDV--ANGVPEWAGKLP 958 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNI+V A+GVP+WA KLP Sbjct: 895 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVAGADGVPDWAEKLP 954 Query: 959 ENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFP 1018 E L SA DSIV+TPVFDGA+E EL GLL++TLPNRDG+V+V+ DGKA+LFDGRSGEPFP Sbjct: 955 EELYSAPSDSIVATPVFDGARENELSGLLASTLPNRDGDVMVNEDGKAELFDGRSGEPFP 1014 Query: 1019 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1078 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1015 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1074 Query: 1079 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1138 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1075 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1134 Query: 1139 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 DGAAI ANLGINLSRNESASVEDLA Sbjct: 1135 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1172 >sp|A1UBJ3|RPOB_MYCSK Tax_Id=189918 (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=Transcriptase subunit beta; AltName: Full=RNA polymerase subunit beta;[Mycobacterium sp.] Length = 1172 Score = 2024 bits (5244), Expect = 0.0 Identities = 1029/1178 (87%), Positives = 1071/1178 (90%), Gaps = 8/1178 (0%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEG ILA Q+ ++ ++ +N+SVPGAPNR+SFAKLREPLEVPGLLDVQT+SF+ Sbjct: 1 MLEGCILAVSSQSKSA------KAITNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFD 54 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WLIG+ WR+ A RGD P GGLEEVL ELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC Sbjct: 55 WLIGADSWRQRATARGDVNPTGGLEEVLTELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 114 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 115 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 174 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 175 PGVYFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 234 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMM TLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 235 WTNEQITERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 294 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQPITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVE 360 EKRYDLARVGRYKVNKKLGLN +PITSSTLTEEDVVATIEYLVRLH+G T MT PGGVE Sbjct: 295 EKRYDLARVGRYKVNKKLGLNTDKPITSSTLTEEDVVATIEYLVRLHQGDTVMTVPGGVE 354 Query: 361 VPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRP 420 VPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRP Sbjct: 355 VPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRP 414 Query: 421 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGR 480 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHYGR Sbjct: 415 VVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGR 474 Query: 481 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVA 540 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+D+I YLTADEEDRHVVA Sbjct: 475 MCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVA 534 Query: 541 QANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDA 600 QANSP+D +G F E RVLVRRK GEVE+V ++EVDYMDVSPRQMVSVATAMIPFLEHDDA Sbjct: 535 QANSPLDDEGHFTEDRVLVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDA 594 Query: 601 NRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMA 660 NRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADYITVMA Sbjct: 595 NRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITVMA 654 Query: 661 DDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVA 720 DDGTRHTYRMRKFARSNHGTCANQ PIVDAG+RVEAGQV+ADGPCTQNGEMALGKNLLVA Sbjct: 655 DDGTRHTYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTQNGEMALGKNLLVA 714 Query: 721 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 780 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA Sbjct: 715 IMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLA 774 Query: 781 DLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHG 840 DLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHG Sbjct: 775 DLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHG 834 Query: 841 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAE 900 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP E Sbjct: 835 ESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVE 894 Query: 901 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDV--ANGVPEWAGKLP 958 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNI+V A+GVP+WA KLP Sbjct: 895 DMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVAGADGVPDWAEKLP 954 Query: 959 ENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFP 1018 E L SA DSIV+TPVFDGA+E EL GLL++TLPNRDG+V+V+ DGKA+LFDGRSGEPFP Sbjct: 955 EELYSAPSDSIVATPVFDGARENELSGLLASTLPNRDGDVMVNEDGKAELFDGRSGEPFP 1014 Query: 1019 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1078 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1015 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1074 Query: 1079 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1138 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1075 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1134 Query: 1139 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 DGAAI ANLGINLSRNESASVEDLA Sbjct: 1135 DGAAIEMRDGDDEDLERAAANLGINLSRNESASVEDLA 1172 >tr|Q6YI62|Q6YI62_9MYCO Tax_Id=56689 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium mucogenicum] Length = 1167 Score = 2004 bits (5191), Expect = 0.0 Identities = 1014/1178 (86%), Positives = 1063/1178 (90%), Gaps = 13/1178 (1%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEGRILA R++ + SN+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE Sbjct: 1 MLEGRILAVSRESKSV--------DSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 52 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WLIGS RWR A RGD PVGGLEEVL ELSPIEDF+G++SLSFSDPRFDEVKAPVDEC Sbjct: 53 WLIGSDRWRSKAVDRGDINPVGGLEEVLAELSPIEDFAGTLSLSFSDPRFDEVKAPVDEC 112 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 K+KD TYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 113 KEKDQTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 172 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE+IDK+T+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 173 PGVYFDESIDKATEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 232 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMMGTLEKD TAG DEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 233 WTNEQIRERFGFSEIMMGTLEKDPTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 292 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQP--ITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGG 358 EKRYDLARVGRYKVNKKLGL+ G P +T++TLTEED+VATIEYLVRLH+G MTAPGG Sbjct: 293 EKRYDLARVGRYKVNKKLGLHDGNPAQVTATTLTEEDIVATIEYLVRLHDGDKTMTAPGG 352 Query: 359 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 418 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 353 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 412 Query: 419 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 478 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 413 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 472 Query: 479 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHV 538 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDG+V+D+I YLTADEEDRHV Sbjct: 473 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGIVTDQIDYLTADEEDRHV 532 Query: 539 VAQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 598 VAQANSP+DA G F E ++LVRRK GEVE+V +++VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 533 VAQANSPLDANGHFTEEKILVRRKGGEVEFVSANDVDYMDVSPRQMVSVATAMIPFLEHD 592 Query: 599 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITV 658 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADY+TV Sbjct: 593 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKSGVIEEVSADYVTV 652 Query: 659 MADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLL 718 MADDG+RHTYRMRKF RSNHGTCANQ PIVD+G+RVEAGQVIADGPCT+NGEMALGKNLL Sbjct: 653 MADDGSRHTYRMRKFNRSNHGTCANQRPIVDSGQRVEAGQVIADGPCTENGEMALGKNLL 712 Query: 719 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 778 VA+MPWEGHNYEDAIILS RLVE+DVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 713 VAVMPWEGHNYEDAIILSQRLVEQDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 772 Query: 779 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 838 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 773 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 832 Query: 839 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 898 HGESGKVIG+RVFSREDDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 833 HGESGKVIGVRVFSREDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 892 Query: 899 AEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLP 958 EDMPF+PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNI+ G PEWA LP Sbjct: 893 QEDMPFMPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIE---GEPEWAANLP 949 Query: 959 ENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFP 1018 E + SA DSIV+TPVFDGA+E ELQGLL ATLPNRDGEV+VD DGK++LFDGRSGEPFP Sbjct: 950 EGMRSAPRDSIVATPVFDGARENELQGLLGATLPNRDGEVMVDADGKSQLFDGRSGEPFP 1009 Query: 1019 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1078 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1010 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1069 Query: 1079 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1138 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1070 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1129 Query: 1139 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 DGAAI ANLGINLSRNESASVEDLA Sbjct: 1130 DGAAIEMRDSDDEDLERTAANLGINLSRNESASVEDLA 1167 >tr|Q6YI63|Q6YI63_9MYCO Tax_Id=56689 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium mucogenicum] Length = 1167 Score = 2002 bits (5187), Expect = 0.0 Identities = 1013/1178 (85%), Positives = 1063/1178 (90%), Gaps = 13/1178 (1%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEGRILA R++ + SN+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE Sbjct: 1 MLEGRILAVSRESKSV--------DSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 52 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WLIGS RWR A RGD PVGGLEEVL ELSPIEDF+G++SLSFSDPRFDEVKAPVDEC Sbjct: 53 WLIGSDRWRSKAVDRGDINPVGGLEEVLAELSPIEDFAGTLSLSFSDPRFDEVKAPVDEC 112 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 K+KD TYAAPLFVTAEFINN TGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 113 KEKDQTYAAPLFVTAEFINNTTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 172 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE+IDK+T+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 173 PGVYFDESIDKATEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 232 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMMGTLEKD TAG DEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 233 WTNEQIRERFGFSEIMMGTLEKDPTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 292 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQP--ITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGG 358 EKRYDLARVGRYKVNKKLGL+ G P +T++TLTEED+VATIEYLVRLH+G T MTAPGG Sbjct: 293 EKRYDLARVGRYKVNKKLGLHDGNPAQVTATTLTEEDIVATIEYLVRLHDGDTKMTAPGG 352 Query: 359 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 418 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 353 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 412 Query: 419 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 478 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 413 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 472 Query: 479 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHV 538 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDG+V+D+I YLTADEEDRHV Sbjct: 473 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGIVTDQIDYLTADEEDRHV 532 Query: 539 VAQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 598 VAQANSP+DA G F E ++LVRRK GEVE+V +++VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 533 VAQANSPLDANGHFTEEKILVRRKGGEVEFVSANDVDYMDVSPRQMVSVATAMIPFLEHD 592 Query: 599 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITV 658 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADY+TV Sbjct: 593 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKSGVIEEVSADYVTV 652 Query: 659 MADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLL 718 MADDG+RHTYRMRKF RSNHGTCANQ PIVD+G+RVEAGQVIADGPCT+NGEMALGKNLL Sbjct: 653 MADDGSRHTYRMRKFNRSNHGTCANQRPIVDSGQRVEAGQVIADGPCTENGEMALGKNLL 712 Query: 719 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 778 VA+MPWEGHNYEDAIILS RLVE+DVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 713 VAVMPWEGHNYEDAIILSQRLVEQDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 772 Query: 779 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 838 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 773 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 832 Query: 839 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 898 HGESGKVIG+RVFSREDDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 833 HGESGKVIGVRVFSREDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 892 Query: 899 AEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLP 958 EDMPF+PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNI+ G PEWA LP Sbjct: 893 QEDMPFMPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIE---GEPEWAANLP 949 Query: 959 ENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFP 1018 E + SA DSIV+TPVFDGA+E ELQGLL ATLPNRDG+V+VD DGK++LFDGRSGEPFP Sbjct: 950 EGMRSAPRDSIVATPVFDGARENELQGLLGATLPNRDGDVMVDADGKSQLFDGRSGEPFP 1009 Query: 1019 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1078 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1010 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1069 Query: 1079 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1138 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1070 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1129 Query: 1139 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 DGAAI ANLGINLSRNESASVEDLA Sbjct: 1130 DGAAIEMRDSDDEDLERTAANLGINLSRNESASVEDLA 1167 >tr|Q6YI59|Q6YI59_9MYCO Tax_Id=56689 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium mucogenicum] Length = 1184 Score = 2002 bits (5186), Expect = 0.0 Identities = 1013/1178 (85%), Positives = 1063/1178 (90%), Gaps = 13/1178 (1%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 VLEGRILA R++ + SN+SVPGAPNRVSFAKLREPLEVPGLL+VQTDSFE Sbjct: 18 VLEGRILAVSRESKSV--------DSNNSVPGAPNRVSFAKLREPLEVPGLLEVQTDSFE 69 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WLIGS RWR A RGD PVGGLEEVL ELSPIEDF+G++SLSFSDPRFDEVKAPVDEC Sbjct: 70 WLIGSDRWRSKAVDRGDINPVGGLEEVLAELSPIEDFAGTLSLSFSDPRFDEVKAPVDEC 129 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 K+KD TYAAPLFVTAEFINN TGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 130 KEKDQTYAAPLFVTAEFINNTTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 189 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE+IDK+T+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 190 PGVYFDESIDKATEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 249 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMMGTLEKD TAG DEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 250 WTNEQIRERFGFSEIMMGTLEKDPTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 309 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQP--ITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGG 358 EKRYDLARVGRYKVNKKLGL+ G P +T++TLTEED+VATIEYLVRLH+G T MTAPGG Sbjct: 310 EKRYDLARVGRYKVNKKLGLHDGNPAQVTATTLTEEDIVATIEYLVRLHDGDTKMTAPGG 369 Query: 359 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 418 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 370 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 429 Query: 419 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 478 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 430 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 489 Query: 479 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHV 538 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDG+V+D+I YLTADEEDRHV Sbjct: 490 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGIVTDQIDYLTADEEDRHV 549 Query: 539 VAQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 598 VAQANSP+DA G F E ++LVRRK GEVE+V +++VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 550 VAQANSPLDANGHFTEEKILVRRKGGEVEFVSANDVDYMDVSPRQMVSVATAMIPFLEHD 609 Query: 599 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITV 658 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADY+TV Sbjct: 610 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKSGVIEEVSADYVTV 669 Query: 659 MADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLL 718 MADDG+RHTYRMRKF RSNHGTCANQ PIVD+G+RVEAGQVIADGPCT+NGEMALGKNLL Sbjct: 670 MADDGSRHTYRMRKFNRSNHGTCANQRPIVDSGQRVEAGQVIADGPCTENGEMALGKNLL 729 Query: 719 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 778 VA+MPWEGHNYEDAIILS RLVE+DVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 730 VAVMPWEGHNYEDAIILSQRLVEQDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 789 Query: 779 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 838 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 790 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 849 Query: 839 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 898 HGESGKVIG+RVFSREDDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 850 HGESGKVIGVRVFSREDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 909 Query: 899 AEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLP 958 EDMPF+PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNI+ G PEWA LP Sbjct: 910 IEDMPFMPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIE---GEPEWAANLP 966 Query: 959 ENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFP 1018 E + SA DSIV+TPVFDGA+E ELQGLL ATLPNRDG+V+VD DGK++LFDGRSGEPFP Sbjct: 967 EGMRSAPRDSIVATPVFDGARENELQGLLGATLPNRDGDVMVDADGKSQLFDGRSGEPFP 1026 Query: 1019 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1078 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1027 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1086 Query: 1079 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1138 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1087 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1146 Query: 1139 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 DGAAI ANLGINLSRNESASVEDLA Sbjct: 1147 DGAAIEMRDSDDEDLERTAANLGINLSRNESASVEDLA 1184 >tr|Q2M4U2|Q2M4U2_9MYCO Tax_Id=319706 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium phocaicum] Length = 1167 Score = 1999 bits (5179), Expect = 0.0 Identities = 1013/1178 (85%), Positives = 1059/1178 (89%), Gaps = 13/1178 (1%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEGRILA R++ + SN+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE Sbjct: 1 MLEGRILAVSRESKSV--------DSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 52 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WLIGS RWR A RGD PVGGLEEVL ELSPIEDF+G++SLSFSDPRFDEVKAPVDEC Sbjct: 53 WLIGSDRWRSKAVDRGDINPVGGLEEVLAELSPIEDFAGTLSLSFSDPRFDEVKAPVDEC 112 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 K+KD TYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMT+ GTFIINGTERVVVSQLVRS Sbjct: 113 KEKDQTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTDMGTFIINGTERVVVSQLVRS 172 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 173 PGVYFDENIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 232 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W+NEQI ERFGFSEIMMGTLEKDN AG DEALLDIYRKLRPGEPPTKESAQ LLENLFFK Sbjct: 233 WTNEQIVERFGFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFK 292 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQP--ITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGG 358 EKRYDLARVGRYKVNKKLGL P +T++TLTEEDVVATIEYLVRLHEGQT MTAPGG Sbjct: 293 EKRYDLARVGRYKVNKKLGLGGANPALVTATTLTEEDVVATIEYLVRLHEGQTTMTAPGG 352 Query: 359 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 418 +EVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 353 LEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 412 Query: 419 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 478 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 413 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 472 Query: 479 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHV 538 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDG+V+D+I YLTADEEDRHV Sbjct: 473 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGIVTDQIDYLTADEEDRHV 532 Query: 539 VAQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 598 VAQANSP+DA G F E ++LVRRK GEVE+V +++VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 533 VAQANSPLDANGHFTEEKILVRRKGGEVEFVSANDVDYMDVSPRQMVSVATAMIPFLEHD 592 Query: 599 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITV 658 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADY+TV Sbjct: 593 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKSGVIEEVSADYVTV 652 Query: 659 MADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLL 718 MADDG+RHTYRMRKF RSNHGTCANQ PIVD+G+RVEAGQVIADGPCT+NGEMALGKNLL Sbjct: 653 MADDGSRHTYRMRKFNRSNHGTCANQRPIVDSGQRVEAGQVIADGPCTENGEMALGKNLL 712 Query: 719 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 778 VA+MPWEGHNYEDAIILS RLVE+DVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 713 VAVMPWEGHNYEDAIILSQRLVEQDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 772 Query: 779 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 838 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 773 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 832 Query: 839 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 898 HGESGKVIG+RVFSREDDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 833 HGESGKVIGVRVFSREDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 892 Query: 899 AEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLP 958 EDMPF+PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNI+ G PEWA LP Sbjct: 893 IEDMPFMPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIE---GEPEWAANLP 949 Query: 959 ENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFP 1018 E + SA DSIV+TPVFDGA+E ELQGLL +TLPNRDG+V+VD DGKA LFDGRSGEPFP Sbjct: 950 EGMHSAPRDSIVATPVFDGARENELQGLLGSTLPNRDGDVMVDADGKATLFDGRSGEPFP 1009 Query: 1019 YPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1078 YPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG Sbjct: 1010 YPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYG 1069 Query: 1079 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1138 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS Sbjct: 1070 AAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSS 1129 Query: 1139 DGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 DGAAI ANLGINLSRNESASVEDLA Sbjct: 1130 DGAAIEMRDSDDEDLERTAANLGINLSRNESASVEDLA 1167 >tr|Q6X0L5|Q6X0L5_9MYCO Tax_Id=83262 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium immunogenum] Length = 1171 Score = 1996 bits (5170), Expect = 0.0 Identities = 1009/1175 (85%), Positives = 1056/1175 (89%), Gaps = 12/1175 (1%) Query: 4 GRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLI 63 G ILA RQT + +++ +SVPGAPNR+SFAKLREPL VPGLLDVQTDSFEWL+ Sbjct: 7 GPILAVSRQT-------KTDNATTNSVPGAPNRLSFAKLREPLAVPGLLDVQTDSFEWLV 59 Query: 64 GSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK 123 GS RWRE A RG+ P GGLEE+L ELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK Sbjct: 60 GSPRWREVATARGEVNPTGGLEEILTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK 119 Query: 124 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGV 183 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMT+ GTFIINGTERVVVSQLVRSPGV Sbjct: 120 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTDMGTFIINGTERVVVSQLVRSPGV 179 Query: 184 YFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWSN 243 YFDE IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGW+N Sbjct: 180 YFDENIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTN 239 Query: 244 EQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKR 303 EQI ERFGFSEIMMGTLEKDN AG DEALLDIYRKLRPGEPPTKESAQ LLENLFFKEKR Sbjct: 240 EQIVERFGFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFKEKR 299 Query: 304 YDLARVGRYKVNKKLGLNAGQP--ITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVEV 361 YDLARVGRYKVNKKLGL P +T++TLTEEDVVATIEYLVRLHEGQT MTAPGGVEV Sbjct: 300 YDLARVGRYKVNKKLGLGGTNPAQVTTTTLTEEDVVATIEYLVRLHEGQTTMTAPGGVEV 359 Query: 362 PVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRPV 421 PV+ DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRPV Sbjct: 360 PVDVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPV 419 Query: 422 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRM 481 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGL+R+RAGLEVRDVHPSHYGRM Sbjct: 420 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYGRM 479 Query: 482 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVAQ 541 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV DGVV+DEIHYLTADEEDRHVVAQ Sbjct: 480 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVSDGVVTDEIHYLTADEEDRHVVAQ 539 Query: 542 ANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDAN 601 ANSP+DA GRF E ++LVRRK GEVE+V ++EVDYMDVSPRQMVSVATAMIPFLEHDDAN Sbjct: 540 ANSPVDANGRFTEEKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDAN 599 Query: 602 RALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMAD 661 RALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADY+TVMAD Sbjct: 600 RALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKAGVIEEVSADYVTVMAD 659 Query: 662 DGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVAI 721 DGTR +YR+RKFARSNHGTCANQ PIVD G+RVE GQV+ADGPCT+NGEMALGKNLLVA+ Sbjct: 660 DGTRQSYRLRKFARSNHGTCANQKPIVDEGQRVEVGQVLADGPCTENGEMALGKNLLVAV 719 Query: 722 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD 781 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD Sbjct: 720 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD 779 Query: 782 LDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGE 841 LDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGE Sbjct: 780 LDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGE 839 Query: 842 SGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAED 901 SGKVIGIRVFSR+DDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP ED Sbjct: 840 SGKVIGIRVFSRDDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVED 899 Query: 902 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPENL 961 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGW+AK+GWNI+ G PEWA LPE+L Sbjct: 900 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWIAKTGWNIE---GDPEWAQNLPEDL 956 Query: 962 LSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYPV 1021 SA D+ +TPVFDGA+E EL GLLS+TLPNRDGEV+VDGDGKA+LFDGRSGEPFPYPV Sbjct: 957 QSAPADTRTATPVFDGAREEELTGLLSSTLPNRDGEVMVDGDGKARLFDGRSGEPFPYPV 1016 Query: 1022 TVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY 1081 TVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY Sbjct: 1017 TVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY 1076 Query: 1082 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGA 1141 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS DGA Sbjct: 1077 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSKDGA 1136 Query: 1142 AIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AI ANLGINLSRNESAS+ED A Sbjct: 1137 AIEMRDGDDEDLERAAANLGINLSRNESASIEDFA 1171 >tr|Q6YI70|Q6YI70_MYCCH Tax_Id=1774 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium chelonae] Length = 1171 Score = 1995 bits (5169), Expect = 0.0 Identities = 1010/1175 (85%), Positives = 1056/1175 (89%), Gaps = 12/1175 (1%) Query: 4 GRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLI 63 G ILA RQT + +++ +SVPGAP+R+SFAKLREPL VPGLLDVQTDSFEWL+ Sbjct: 7 GPILAVSRQT-------KTDNATTNSVPGAPSRLSFAKLREPLAVPGLLDVQTDSFEWLV 59 Query: 64 GSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK 123 GS RWRE A RG+ P GGLEE+L ELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK Sbjct: 60 GSPRWREVATARGEVNPTGGLEEILTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK 119 Query: 124 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGV 183 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTE GTFIINGTERVVVSQLVRSPGV Sbjct: 120 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEMGTFIINGTERVVVSQLVRSPGV 179 Query: 184 YFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWSN 243 YFDE IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGW+N Sbjct: 180 YFDENIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTN 239 Query: 244 EQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKR 303 EQI ERFGFSEIMMGTLEKDN AG DEALLDIYRKLRPGEPPTKESAQ LLENLFFKEKR Sbjct: 240 EQIVERFGFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFKEKR 299 Query: 304 YDLARVGRYKVNKKLGLNAGQP--ITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVEV 361 YDLARVGRYKVNKKLGL P +T++TLTEEDVVATIEYLVRLHEGQT MTAPGG+EV Sbjct: 300 YDLARVGRYKVNKKLGLGGANPALVTATTLTEEDVVATIEYLVRLHEGQTTMTAPGGLEV 359 Query: 362 PVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRPV 421 PVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRPV Sbjct: 360 PVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPV 419 Query: 422 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRM 481 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGL+R+RAGLEVRDVHPSHYGRM Sbjct: 420 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYGRM 479 Query: 482 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVAQ 541 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV +GVV+DEIHYLTADEEDRHVVAQ Sbjct: 480 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVSEGVVTDEIHYLTADEEDRHVVAQ 539 Query: 542 ANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDAN 601 ANSP+DA GRF E ++LVRRK GEVE+V ++EVDYMDVSPRQMVSVATAMIPFLEHDDAN Sbjct: 540 ANSPVDADGRFTEDKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDAN 599 Query: 602 RALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMAD 661 RALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADY+TVMAD Sbjct: 600 RALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKAGVIEEVSADYVTVMAD 659 Query: 662 DGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVAI 721 DGTR +YR+RKFARSNHGTCANQ PIVD G+RVE GQVIADGPCT+NGEMALGKNLLVA+ Sbjct: 660 DGTRQSYRLRKFARSNHGTCANQKPIVDEGQRVEVGQVIADGPCTENGEMALGKNLLVAV 719 Query: 722 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD 781 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD Sbjct: 720 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD 779 Query: 782 LDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGE 841 LDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGE Sbjct: 780 LDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGE 839 Query: 842 SGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAED 901 SGKVIGIRVFSR+DDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP ED Sbjct: 840 SGKVIGIRVFSRDDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVED 899 Query: 902 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPENL 961 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNI+ G PEWA LPE+L Sbjct: 900 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKTGWNIE---GNPEWAQNLPEDL 956 Query: 962 LSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYPV 1021 SA D+ +TPVFDGA+E EL GLLS+TLPNRDGEV+VDGDGKA+LFDGRSGEPFPYPV Sbjct: 957 QSAPADTRTATPVFDGAREEELTGLLSSTLPNRDGEVMVDGDGKARLFDGRSGEPFPYPV 1016 Query: 1022 TVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY 1081 TVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY Sbjct: 1017 TVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY 1076 Query: 1082 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGA 1141 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS DGA Sbjct: 1077 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSKDGA 1136 Query: 1142 AIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AI ANLGINLSRNESAS+ED A Sbjct: 1137 AIEMRDGDDEDLERAAANLGINLSRNESASIEDFA 1171 >tr|Q2M4U3|Q2M4U3_9MYCO Tax_Id=319705 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium bolletii] Length = 1171 Score = 1995 bits (5168), Expect = 0.0 Identities = 1009/1175 (85%), Positives = 1058/1175 (90%), Gaps = 12/1175 (1%) Query: 4 GRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLI 63 G ILA RQT + +++ +SVPGAP+R+SFAKLREPL VPGLLDVQT+SFEWL+ Sbjct: 7 GPILAVSRQT-------KTDNATTNSVPGAPSRLSFAKLREPLAVPGLLDVQTESFEWLV 59 Query: 64 GSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK 123 GS RWRE A RG+ P GGLEE+L ELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK Sbjct: 60 GSPRWREVATARGEVNPTGGLEEILTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK 119 Query: 124 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGV 183 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMT+ GTFIINGTERVVVSQLVRSPGV Sbjct: 120 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTDMGTFIINGTERVVVSQLVRSPGV 179 Query: 184 YFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWSN 243 YFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGW+N Sbjct: 180 YFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTN 239 Query: 244 EQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKR 303 EQI ERFGFSEIMMGTLEKDN AG DEALLDIYRKLRPGEPPTKESAQ LLENLFFKEKR Sbjct: 240 EQIVERFGFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFKEKR 299 Query: 304 YDLARVGRYKVNKKLGLNAGQP--ITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVEV 361 YDLARVGRYKVNKKLGL P +T++TLTEEDVVATIEYLVRLHEGQT MTAPGGVEV Sbjct: 300 YDLARVGRYKVNKKLGLGGTNPAQVTTTTLTEEDVVATIEYLVRLHEGQTTMTAPGGVEV 359 Query: 362 PVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRPV 421 PV+ DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRPV Sbjct: 360 PVDVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPV 419 Query: 422 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRM 481 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGL+R+RAGLEVRDVHPSHYGRM Sbjct: 420 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYGRM 479 Query: 482 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVAQ 541 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV DGVV+DEIHYLTADEEDRHVVAQ Sbjct: 480 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVSDGVVTDEIHYLTADEEDRHVVAQ 539 Query: 542 ANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDAN 601 ANSP+DA GRF E ++LVRRK GEVE+V ++EVDYMDVSPRQMVSVATAMIPFLEHDDAN Sbjct: 540 ANSPVDANGRFTEEKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDAN 599 Query: 602 RALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMAD 661 RALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADY+TVMAD Sbjct: 600 RALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKAGVIEEVSADYVTVMAD 659 Query: 662 DGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVAI 721 DGTR +YR+RKFARSNHGTCANQ PIVD G+RVEAGQVIADGPCT+NGEMALGKNLLVA+ Sbjct: 660 DGTRQSYRLRKFARSNHGTCANQKPIVDEGQRVEAGQVIADGPCTENGEMALGKNLLVAV 719 Query: 722 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD 781 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD Sbjct: 720 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD 779 Query: 782 LDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGE 841 LDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGE Sbjct: 780 LDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGE 839 Query: 842 SGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAED 901 SGKVIGIRVFSR+DDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP ED Sbjct: 840 SGKVIGIRVFSRDDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVED 899 Query: 902 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPENL 961 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGW+AK+GWNI+ G PEWA LPE+L Sbjct: 900 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWIAKTGWNIE---GDPEWAQNLPEDL 956 Query: 962 LSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYPV 1021 SA D+ +TPVFDGA+E EL GLLS+TLPNRDGEV+VDGDGKA+LFDGRSGEPFPYPV Sbjct: 957 QSAPADTRTATPVFDGAREEELTGLLSSTLPNRDGEVMVDGDGKARLFDGRSGEPFPYPV 1016 Query: 1022 TVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY 1081 TVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY Sbjct: 1017 TVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY 1076 Query: 1082 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGA 1141 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS DGA Sbjct: 1077 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSKDGA 1136 Query: 1142 AIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AI ANLGINLSRNESAS+ED A Sbjct: 1137 AIEMRDGDDEDLERAAANLGINLSRNESASIEDFA 1171 >tr|Q5QGG0|Q5QGG0_9MYCO Tax_Id=281216 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium massiliense] Length = 1171 Score = 1994 bits (5167), Expect = 0.0 Identities = 1008/1175 (85%), Positives = 1058/1175 (90%), Gaps = 12/1175 (1%) Query: 4 GRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLI 63 G ILA RQT + +++ +SVPGAP+R+SFAKLREPL VPGLLDVQT+SFEWL+ Sbjct: 7 GPILAVSRQT-------KTDNATTNSVPGAPSRLSFAKLREPLAVPGLLDVQTESFEWLV 59 Query: 64 GSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK 123 GS RWRE A RG+ P GGLEE+L ELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK Sbjct: 60 GSPRWREVATARGEVNPTGGLEEILTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK 119 Query: 124 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGV 183 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMT+ GTFIINGTERVVVSQLVRSPGV Sbjct: 120 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTDMGTFIINGTERVVVSQLVRSPGV 179 Query: 184 YFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWSN 243 YFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGW+N Sbjct: 180 YFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTN 239 Query: 244 EQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKR 303 EQI ERFGFSEIMMGTLEKDN AG DEALLDIYRKLRPGEPPTKESAQ LLENLFFKEKR Sbjct: 240 EQIVERFGFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFKEKR 299 Query: 304 YDLARVGRYKVNKKLGLNAGQP--ITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVEV 361 YDLARVGRYKVNKKLGL P +T++TLTEEDVVATIEYLVRLHEGQT MTAPGGVEV Sbjct: 300 YDLARVGRYKVNKKLGLGGTNPAQVTTTTLTEEDVVATIEYLVRLHEGQTTMTAPGGVEV 359 Query: 362 PVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRPV 421 PV+ DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRPV Sbjct: 360 PVDVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPV 419 Query: 422 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRM 481 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGL+R+RAGLEVRDVHPSHYGRM Sbjct: 420 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYGRM 479 Query: 482 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVAQ 541 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV DGVV+DEIHYLTADEEDRHVVAQ Sbjct: 480 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVSDGVVTDEIHYLTADEEDRHVVAQ 539 Query: 542 ANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDAN 601 ANSP+DA GRF E ++LVRRK GEVE+V ++EVDYMDVSPRQMVSVATAMIPFLEHDDAN Sbjct: 540 ANSPVDANGRFTEEKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDAN 599 Query: 602 RALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMAD 661 RALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADY+TVMAD Sbjct: 600 RALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKAGVIEEVSADYVTVMAD 659 Query: 662 DGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVAI 721 DGTR +YR+RKFARSNHGTCANQ PIVD G+RVEAGQV+ADGPCT+NGEMALGKNLLVA+ Sbjct: 660 DGTRQSYRLRKFARSNHGTCANQKPIVDEGQRVEAGQVVADGPCTENGEMALGKNLLVAV 719 Query: 722 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD 781 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD Sbjct: 720 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD 779 Query: 782 LDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGE 841 LDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGE Sbjct: 780 LDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGE 839 Query: 842 SGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAED 901 SGKVIGIRVFSR+DDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP ED Sbjct: 840 SGKVIGIRVFSRDDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVED 899 Query: 902 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPENL 961 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGW+AK+GWNI+ G PEWA LPE+L Sbjct: 900 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWIAKTGWNIE---GDPEWAQNLPEDL 956 Query: 962 LSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYPV 1021 SA D+ +TPVFDGA+E EL GLLS+TLPNRDGEV+VDGDGKA+LFDGRSGEPFPYPV Sbjct: 957 QSAPADTRTATPVFDGAREEELTGLLSSTLPNRDGEVMVDGDGKARLFDGRSGEPFPYPV 1016 Query: 1022 TVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY 1081 TVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY Sbjct: 1017 TVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY 1076 Query: 1082 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGA 1141 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS DGA Sbjct: 1077 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSKDGA 1136 Query: 1142 AIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AI ANLGINLSRNESAS+ED A Sbjct: 1137 AIEMRDGDDEDLERAAANLGINLSRNESASIEDFA 1171 >tr|Q6X0L3|Q6X0L3_MYCAB Tax_Id=36809 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium abscessus] Length = 1171 Score = 1994 bits (5166), Expect = 0.0 Identities = 1008/1175 (85%), Positives = 1057/1175 (89%), Gaps = 12/1175 (1%) Query: 4 GRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLI 63 G ILA RQT + +++ +SVPGAP+R+SFAKLREPL VPGLLDVQT+SFEWL+ Sbjct: 7 GPILAVSRQT-------KTDNATTNSVPGAPSRLSFAKLREPLAVPGLLDVQTESFEWLV 59 Query: 64 GSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK 123 GS RWRE A RG+ P GGLEE+L ELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK Sbjct: 60 GSPRWREVATARGEVNPTGGLEEILTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK 119 Query: 124 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGV 183 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMT+ GTFIINGTERVVVSQLVRSPGV Sbjct: 120 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTDMGTFIINGTERVVVSQLVRSPGV 179 Query: 184 YFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWSN 243 YFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGW+N Sbjct: 180 YFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTN 239 Query: 244 EQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKR 303 EQI ERFGFSEIMMGTLEKDN AG DEALLDIYRKLRPGEPPTKESAQ LLENLFFKEKR Sbjct: 240 EQIVERFGFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFKEKR 299 Query: 304 YDLARVGRYKVNKKLGLNAGQP--ITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVEV 361 YDLARVGRYKVNKKLGL P +T++TLTEEDVVATIEYLVRLHEGQT MTAPGGVEV Sbjct: 300 YDLARVGRYKVNKKLGLGGTNPAQVTTTTLTEEDVVATIEYLVRLHEGQTTMTAPGGVEV 359 Query: 362 PVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRPV 421 PV+ DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRPV Sbjct: 360 PVDVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPV 419 Query: 422 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRM 481 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGL+R+RAGLEVRDVHPSHYGRM Sbjct: 420 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYGRM 479 Query: 482 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVAQ 541 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV DGVV+DEIHYLTADEEDRHVVAQ Sbjct: 480 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVSDGVVTDEIHYLTADEEDRHVVAQ 539 Query: 542 ANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDAN 601 ANSP+DA GRF E ++LVRRK GEVE+V ++EVDYMDVSPRQMVSVATAMIPFLEHDDAN Sbjct: 540 ANSPVDANGRFTEEKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDAN 599 Query: 602 RALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMAD 661 RALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADY+TVMAD Sbjct: 600 RALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKAGVIEEVSADYVTVMAD 659 Query: 662 DGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVAI 721 DGTR +YR+RKFARSNHGTCANQ PIVD G+RVEAGQVIADGPCT+NGEMALGKNLLVA+ Sbjct: 660 DGTRQSYRLRKFARSNHGTCANQKPIVDEGQRVEAGQVIADGPCTENGEMALGKNLLVAV 719 Query: 722 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD 781 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD Sbjct: 720 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD 779 Query: 782 LDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGE 841 LDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGE Sbjct: 780 LDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGE 839 Query: 842 SGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAED 901 SGKVIGIRVFSR+DDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP ED Sbjct: 840 SGKVIGIRVFSRDDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVED 899 Query: 902 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPENL 961 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGW+AK+GWNI+ G PEWA LP +L Sbjct: 900 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWIAKTGWNIE---GEPEWAANLPADL 956 Query: 962 LSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYPV 1021 SA D+ +TPVFDGA+E EL GLLS+TLPNRDGEV+VDGDGKA+LFDGRSGEPFPYPV Sbjct: 957 TSAPADTRTATPVFDGAREEELTGLLSSTLPNRDGEVMVDGDGKARLFDGRSGEPFPYPV 1016 Query: 1022 TVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY 1081 TVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY Sbjct: 1017 TVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY 1076 Query: 1082 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGA 1141 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS DGA Sbjct: 1077 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSKDGA 1136 Query: 1142 AIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AI ANLGINLSRNESAS+ED A Sbjct: 1137 AIEMRDGDDEDLERAAANLGINLSRNESASIEDFA 1171 >tr|Q2M4U1|Q2M4U1_9MYCO Tax_Id=319707 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium aubagnense] Length = 1172 Score = 1994 bits (5165), Expect = 0.0 Identities = 1010/1180 (85%), Positives = 1064/1180 (90%), Gaps = 12/1180 (1%) Query: 1 VLEGRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 60 +LEGRILA R++ + SN+SVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE Sbjct: 1 MLEGRILAASRESKSV--------DSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFE 52 Query: 61 WLIGSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDEC 120 WLIGS RWR A RGD PVGGLEEVL ELSPIEDF+G++SLSFSDPRFDEVKAPVDEC Sbjct: 53 WLIGSDRWRAKAVDRGDINPVGGLEEVLAELSPIEDFAGTLSLSFSDPRFDEVKAPVDEC 112 Query: 121 KDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 180 K+KD TYAAPLFVTAEFINN TGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS Sbjct: 113 KEKDQTYAAPLFVTAEFINNTTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRS 172 Query: 181 PGVYFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 240 PGVYFDE+IDK+T+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG Sbjct: 173 PGVYFDESIDKATEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALG 232 Query: 241 WSNEQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 300 W++EQI ERFGFSEIMMGTLEKD TAG DEALLDIYRKLRPGEPPTKESAQTLLENLFFK Sbjct: 233 WTSEQIRERFGFSEIMMGTLEKDPTAGPDEALLDIYRKLRPGEPPTKESAQTLLENLFFK 292 Query: 301 EKRYDLARVGRYKVNKKLGLNAGQP--ITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGG 358 EKRYDLARVGRYKVNKKLGL+ G P +T++TLTEED+VATIEYLVRLH+G T MTAPGG Sbjct: 293 EKRYDLARVGRYKVNKKLGLHDGNPAQVTATTLTEEDIVATIEYLVRLHDGDTKMTAPGG 352 Query: 359 VEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINI 418 VEVPVE DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINI Sbjct: 353 VEVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINI 412 Query: 419 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHY 478 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVH SHY Sbjct: 413 RPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHY 472 Query: 479 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHV 538 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVV+D+I YLTADEEDRHV Sbjct: 473 GRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHV 532 Query: 539 VAQANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHD 598 VAQANSP+D G F E ++LVRRK GEVE+V +++VDYMDVSPRQMVSVATAMIPFLEHD Sbjct: 533 VAQANSPLDDGGHFTEDKILVRRKGGEVEFVSANDVDYMDVSPRQMVSVATAMIPFLEHD 592 Query: 599 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITV 658 DANRALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADY+TV Sbjct: 593 DANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVADKSGVIEEVSADYVTV 652 Query: 659 MADDGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLL 718 MADDG+RHTYRMRKF RSNHGTCANQ PIVD+G+RVEAGQVIADGPCT+NGEMALGKNLL Sbjct: 653 MADDGSRHTYRMRKFNRSNHGTCANQRPIVDSGQRVEAGQVIADGPCTENGEMALGKNLL 712 Query: 719 VAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 778 VA+MPWEGHNYEDAIILS RLVE+DVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV Sbjct: 713 VAVMPWEGHNYEDAIILSQRLVEQDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEV 772 Query: 779 LADLDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVP 838 LADLDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVP Sbjct: 773 LADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVP 832 Query: 839 HGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 898 HGESGKVIG+RVFSREDDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP Sbjct: 833 HGESGKVIGVRVFSREDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP 892 Query: 899 AEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDV-ANGV-PEWAGK 956 EDMPF+PDGTPVDIILNTHGVPRRMNIGQILETHLGWVAK+GWNI+ ANG PEWA Sbjct: 893 QEDMPFMPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNIEADANGAYPEWAAN 952 Query: 957 LPENLLSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEP 1016 LP+ + SA DSIV+TPVFDGA+E EL+GLL +TLPNRDG+V+VD +GK++LFDGRSGEP Sbjct: 953 LPDGMHSAPRDSIVATPVFDGAREGELEGLLGSTLPNRDGDVMVDAEGKSQLFDGRSGEP 1012 Query: 1017 FPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA 1076 FPYPVTVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA Sbjct: 1013 FPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQA 1072 Query: 1077 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL 1136 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL Sbjct: 1073 YGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVL 1132 Query: 1137 SSDGAAIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 SSDGAAI ANLGINLSRNESASVEDLA Sbjct: 1133 SSDGAAIEMRDSDDEDLERTAANLGINLSRNESASVEDLA 1172 >tr|B1MH62|B1MH62_MYCA9 Tax_Id=561007 RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium abscessus] Length = 1171 Score = 1993 bits (5163), Expect = 0.0 Identities = 1007/1175 (85%), Positives = 1057/1175 (89%), Gaps = 12/1175 (1%) Query: 4 GRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLI 63 G ILA RQT + +++ +SVPGAP+R+SFAKLREPL VPGLLDVQT+SFEWL+ Sbjct: 7 GPILAVSRQT-------KTDNATTNSVPGAPSRLSFAKLREPLAVPGLLDVQTESFEWLV 59 Query: 64 GSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK 123 GS RWRE A RG+ P GGLEE+L ELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK Sbjct: 60 GSPRWREVATARGEVNPTGGLEEILTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK 119 Query: 124 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGV 183 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMT+ GTFIINGTERVVVSQLVRSPGV Sbjct: 120 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTDMGTFIINGTERVVVSQLVRSPGV 179 Query: 184 YFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWSN 243 YFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGW+N Sbjct: 180 YFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTN 239 Query: 244 EQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKR 303 EQI ERFGFSEIMMGTLEKDN AG DEALLDIYRKLRPGEPPTKESAQ LLENLFFKEKR Sbjct: 240 EQIVERFGFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFKEKR 299 Query: 304 YDLARVGRYKVNKKLGLNAGQP--ITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVEV 361 YDLARVGRYKVNKKLGL P +T++TLTEEDVVATIEYLVRLHEGQT MTAPGGVEV Sbjct: 300 YDLARVGRYKVNKKLGLGGTNPAQVTTTTLTEEDVVATIEYLVRLHEGQTTMTAPGGVEV 359 Query: 362 PVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRPV 421 PV+ DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRPV Sbjct: 360 PVDVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPV 419 Query: 422 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRM 481 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGL+R+RAGLEVRDVHPSHYGRM Sbjct: 420 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYGRM 479 Query: 482 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVAQ 541 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV DGVV+D+IHYLTADEEDRHVVAQ Sbjct: 480 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVSDGVVTDDIHYLTADEEDRHVVAQ 539 Query: 542 ANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDAN 601 ANSP+DA GRF E ++LVRRK GEVE+V ++EVDYMDVSPRQMVSVATAMIPFLEHDDAN Sbjct: 540 ANSPVDANGRFTEEKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDAN 599 Query: 602 RALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMAD 661 RALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADY+TVMAD Sbjct: 600 RALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKAGVIEEVSADYVTVMAD 659 Query: 662 DGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVAI 721 DGTR +YR+RKFARSNHGTCANQ PIVD G+RVEAGQVIADGPCT+NGEMALGKNLLVA+ Sbjct: 660 DGTRQSYRLRKFARSNHGTCANQKPIVDEGQRVEAGQVIADGPCTENGEMALGKNLLVAV 719 Query: 722 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD 781 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD Sbjct: 720 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD 779 Query: 782 LDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGE 841 LDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGE Sbjct: 780 LDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGE 839 Query: 842 SGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAED 901 SGKVIGIRVFSR+DDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP ED Sbjct: 840 SGKVIGIRVFSRDDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVED 899 Query: 902 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPENL 961 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGW+AK+GWNI+ G PEWA LP +L Sbjct: 900 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWIAKTGWNIE---GEPEWAANLPADL 956 Query: 962 LSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYPV 1021 SA D+ +TPVFDGA+E EL GLLS+TLPNRDGEV+VDGDGKA+LFDGRSGEPFPYPV Sbjct: 957 TSAPADTRTATPVFDGAREEELTGLLSSTLPNRDGEVMVDGDGKARLFDGRSGEPFPYPV 1016 Query: 1022 TVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY 1081 TVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY Sbjct: 1017 TVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY 1076 Query: 1082 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGA 1141 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS DGA Sbjct: 1077 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSKDGA 1136 Query: 1142 AIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AI ANLGINLSRNESAS+ED A Sbjct: 1137 AIEMRDGDDEDLERAAANLGINLSRNESASIEDFA 1171 >tr|Q6YI69|Q6YI69_MYCAB Tax_Id=36809 (rpoB)RecName: Full=DNA-directed RNA polymerase; EC=2.7.7.6;[Mycobacterium abscessus] Length = 1171 Score = 1993 bits (5163), Expect = 0.0 Identities = 1007/1175 (85%), Positives = 1057/1175 (89%), Gaps = 12/1175 (1%) Query: 4 GRILADFRQTDASLHQGRPQSSSNSSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLI 63 G ILA RQT + +++ +SVPGAP+R+SFAKLREPL VPGLLDVQT+SFEWL+ Sbjct: 7 GPILAVSRQT-------KTDNATTNSVPGAPSRLSFAKLREPLAVPGLLDVQTESFEWLV 59 Query: 64 GSQRWRESAAQRGDATPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK 123 GS RWRE A RG+ P GGLEE+L ELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK Sbjct: 60 GSPRWREVATARGEVNPTGGLEEILTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDK 119 Query: 124 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGV 183 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMT+ GTFIINGTERVVVSQLVRSPGV Sbjct: 120 DMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTDMGTFIINGTERVVVSQLVRSPGV 179 Query: 184 YFDETIDKSTDKLLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWSN 243 YFDE+IDKST+K LHSVKVIP RGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGW+N Sbjct: 180 YFDESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTN 239 Query: 244 EQIHERFGFSEIMMGTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKR 303 EQI ERFGFSEIMMGTLEKDN AG DEALLDIYRKLRPGEPPTKESAQ LLENLFFKEKR Sbjct: 240 EQIVERFGFSEIMMGTLEKDNIAGPDEALLDIYRKLRPGEPPTKESAQALLENLFFKEKR 299 Query: 304 YDLARVGRYKVNKKLGLNAGQP--ITSSTLTEEDVVATIEYLVRLHEGQTAMTAPGGVEV 361 YDLARVGRYKVNKKLGL P +T++TLTEEDVVATIEYLVRLHEGQT MTAPGGVEV Sbjct: 300 YDLARVGRYKVNKKLGLGGTNPAQVTTTTLTEEDVVATIEYLVRLHEGQTTMTAPGGVEV 359 Query: 362 PVETDDIDHFGNRRLRTVGELIQNQIRVGMSXXXXXXXXXXXXQDVEAITPQTLINIRPV 421 PV+ DDIDHFGNRRLRTVGELIQNQIRVG+S QDVEAITPQTLINIRPV Sbjct: 360 PVDVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPV 419 Query: 422 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRM 481 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGL+R+RAGLEVRDVHPSHYGRM Sbjct: 420 VAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLTRDRAGLEVRDVHPSHYGRM 479 Query: 482 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIHYLTADEEDRHVVAQ 541 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKV DGVV+D+IHYLTADEEDRHVVAQ Sbjct: 480 CPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVSDGVVTDDIHYLTADEEDRHVVAQ 539 Query: 542 ANSPIDAQGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDAN 601 ANSP+DA GRF E ++LVRRK GEVE+V ++EVDYMDVSPRQMVSVATAMIPFLEHDDAN Sbjct: 540 ANSPVDANGRFTEEKILVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDAN 599 Query: 602 RALMGANMQRQAVPLVRSEAPLVGTGMELRXXXXXXXXXXXXXXXXXEEVSADYITVMAD 661 RALMGANMQRQAVPLVRSEAPLVGTGMELR EEVSADY+TVMAD Sbjct: 600 RALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEKAGVIEEVSADYVTVMAD 659 Query: 662 DGTRHTYRMRKFARSNHGTCANQSPIVDAGERVEAGQVIADGPCTQNGEMALGKNLLVAI 721 DGTR +YR+RKFARSNHGTCANQ PIVD G+RVEAGQVIADGPCT+NGEMALGKNLLVA+ Sbjct: 660 DGTRQSYRLRKFARSNHGTCANQKPIVDEGQRVEAGQVIADGPCTENGEMALGKNLLVAV 719 Query: 722 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD 781 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD Sbjct: 720 MPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLAD 779 Query: 782 LDERGIVRIGAEVRDGDILVGKVTPKGXXXXXXXXXXXXAIFGEKAREVRDTSLKVPHGE 841 LDERGIVRIGAEVRDGDILVGKVTPKG AIFGEKAREVRDTSLKVPHGE Sbjct: 780 LDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGE 839 Query: 842 SGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPAED 901 SGKVIGIRVFSR+DDD+LPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILP ED Sbjct: 840 SGKVIGIRVFSRDDDDDLPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVED 899 Query: 902 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWVAKSGWNIDVANGVPEWAGKLPENL 961 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGW+AK+GWNI+ G PEWA LP +L Sbjct: 900 MPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWIAKTGWNIE---GEPEWAANLPADL 956 Query: 962 LSAQPDSIVSTPVFDGAQEAELQGLLSATLPNRDGEVLVDGDGKAKLFDGRSGEPFPYPV 1021 SA D+ +TPVFDGA+E EL GLLS+TLPNRDGEV+VDGDGKA+LFDGRSGEPFPYPV Sbjct: 957 TSAPADTRTATPVFDGAREEELTGLLSSTLPNRDGEVMVDGDGKARLFDGRSGEPFPYPV 1016 Query: 1022 TVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY 1081 TVGYMYI+KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY Sbjct: 1017 TVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAY 1076 Query: 1082 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGA 1141 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLS DGA Sbjct: 1077 TLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSKDGA 1136 Query: 1142 AIXXXXXXXXXXXXXXANLGINLSRNESASVEDLA 1176 AI ANLGINLSRNESAS+ED A Sbjct: 1137 AIEMRDGDDEDLERAAANLGINLSRNESASIEDFA 1171 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.316 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 8,696,752,924 Number of extensions: 385256396 Number of successful extensions: 886118 Number of sequences better than 10.0: 14768 Number of HSP's gapped: 854875 Number of HSP's successfully gapped: 20727 Length of query: 1176 Length of database: 3,846,993,858 Length adjustment: 149 Effective length of query: 1027 Effective length of database: 2,166,988,611 Effective search space: 2225497303497 Effective search space used: 2225497303497 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 86 (37.7 bits)