BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MMAR_0996
         (1316 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,275,203 sequences; 3,846,993,858 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

sp|B2HSJ4|RPOC_MYCMM Tax_Id=216594 (rpoC)RecName: Full=DNA-direc...  2489   0.0  
sp|A0PM25|RPOC_MYCUA Tax_Id=362242 (rpoC)RecName: Full=DNA-direc...  2477   0.0  
sp|Q73SE3|RPOC_MYCPA Tax_Id=1770 (rpoC)RecName: Full=DNA-directe...  2428   0.0  
sp|A0QL48|RPOC_MYCA1 Tax_Id=243243 (rpoC)RecName: Full=DNA-direc...  2427   0.0  
sp|P0A674|RPOC_MYCTU Tax_Id=1773 (rpoC)RecName: Full=DNA-directe...  2416   0.0  
sp|A5U053|RPOC_MYCTA Tax_Id=419947 (rpoC)RecName: Full=DNA-direc...  2416   0.0  
sp|P0A675|RPOC_MYCBO Tax_Id=1765 (rpoC)RecName: Full=DNA-directe...  2416   0.0  
tr|C6DUI1|C6DUI1_MYCTK Tax_Id=478434 RecName: Full=DNA-directed ...  2416   0.0  
tr|A5WK36|A5WK36_MYCTF Tax_Id=336982 RecName: Full=DNA-directed ...  2416   0.0  
sp|A1KGE8|RPOC_MYCBP Tax_Id=410289 (rpoC)RecName: Full=DNA-direc...  2413   0.0  
sp|C1AL01|RPOC_MYCBT Tax_Id=561275 (rpoC)RecName: Full=DNA-direc...  2412   0.0  
sp|P30761|RPOC_MYCLE Tax_Id=1769 (rpoC)RecName: Full=DNA-directe...  2383   0.0  
sp|B8ZSC6|RPOC_MYCLB Tax_Id=561304 (rpoC)RecName: Full=DNA-direc...  2383   0.0  
sp|Q1BDE9|RPOC_MYCSS Tax_Id=164756 (rpoC)RecName: Full=DNA-direc...  2287   0.0  
sp|A1UBJ4|RPOC_MYCSK Tax_Id=189918 (rpoC)RecName: Full=DNA-direc...  2287   0.0  
sp|A3PV79|RPOC_MYCSJ Tax_Id=164757 (rpoC)RecName: Full=DNA-direc...  2287   0.0  
sp|A1T4J3|RPOC_MYCVP Tax_Id=350058 (rpoC)RecName: Full=DNA-direc...  2287   0.0  
sp|A4T1P3|RPOC_MYCGI Tax_Id=350054 (rpoC)RecName: Full=DNA-direc...  2274   0.0  
sp|A0QS66|RPOC_MYCS2 Tax_Id=246196 (rpoC)RecName: Full=DNA-direc...  2274   0.0  
sp|B1MH61|RPOC_MYCA9 Tax_Id=561007 (rpoC)RecName: Full=DNA-direc...  2257   0.0  
tr|A4KEZ2|A4KEZ2_MYCTU Tax_Id=395095 RecName: Full=DNA-directed ...  2241   0.0  
sp|Q5YPE1|RPOC_NOCFA Tax_Id=37329 (rpoC)RecName: Full=DNA-direct...  2236   0.0  
sp|Q0SFB4|RPOC_RHOSR Tax_Id=101510 (rpoC)RecName: Full=DNA-direc...  2179   0.0  
sp|C1AYV8|RPOC_RHOOB Tax_Id=632772 (rpoC)RecName: Full=DNA-direc...  2174   0.0  
tr|C2ALB8|C2ALB8_TSUPA Tax_Id=521096 RecName: Full=DNA-directed ...  2160   0.0  
sp|C0ZVQ7|RPOC_RHOE4 Tax_Id=234621 (rpoC)RecName: Full=DNA-direc...  2154   0.0  
tr|D0L4Z5|D0L4Z5_GORB4 Tax_Id=526226 SubName: Full=DNA-directed ...  2153   0.0  
tr|C3JJR1|C3JJR1_RHOER Tax_Id=596309 (rpoC)RecName: Full=DNA-dir...  2153   0.0  
sp|A4FPP2|RPOC_SACEN Tax_Id=405948 (rpoC)RecName: Full=DNA-direc...  2006   0.0  
tr|C7MTI8|C7MTI8_SACVD Tax_Id=471857 RecName: Full=DNA-directed ...  1982   0.0  
tr|C6WN59|C6WN59_ACTMD Tax_Id=446462 RecName: Full=DNA-directed ...  1953   0.0  
tr|C8XBL0|C8XBL0_NAKMY Tax_Id=479431 SubName: Full=DNA-directed ...  1897   0.0  
sp|Q4JT33|RPOC_CORJK Tax_Id=306537 (rpoC)RecName: Full=DNA-direc...  1870   0.0  
tr|C8RUP2|C8RUP2_CORJE Tax_Id=525262 (rpoC)SubName: Full=DNA-dir...  1862   0.0  
sp|B1VES2|RPOC_CORU7 Tax_Id=504474 (rpoC)RecName: Full=DNA-direc...  1843   0.0  
tr|C0U8K2|C0U8K2_9ACTO Tax_Id=526225 RecName: Full=DNA-directed ...  1830   0.0  
sp|C4LL70|RPOC_CORK4 Tax_Id=645127 (rpoC)RecName: Full=DNA-direc...  1824   0.0  
sp|Q0RRS9|RPOC_FRAAA Tax_Id=326424 (rpoC)RecName: Full=DNA-direc...  1819   0.0  
sp|Q2JFI4|RPOC_FRASC Tax_Id=106370 (rpoC)RecName: Full=DNA-direc...  1816   0.0  
tr|C8NX30|C8NX30_9CORY Tax_Id=585529 (rpoC)SubName: Full=DNA-dir...  1816   0.0  
tr|C0XUK4|C0XUK4_9CORY Tax_Id=525263 (rpoC)RecName: Full=DNA-dir...  1813   0.0  
sp|A8LC63|RPOC_FRASN Tax_Id=298653 (rpoC)RecName: Full=DNA-direc...  1811   0.0  
sp|Q6NJF6|RPOC_CORDI Tax_Id=1717 (rpoC)RecName: Full=DNA-directe...  1810   0.0  
sp|Q8FS96|RPOC_COREF Tax_Id=152794 (rpoC)RecName: Full=DNA-direc...  1809   0.0  
tr|C8NSA9|C8NSA9_COREF Tax_Id=196164 (rpoC)SubName: Full=DNA-dir...  1809   0.0  
tr|C4RBP6|C4RBP6_9ACTO Tax_Id=219305 RecName: Full=DNA-directed ...  1808   0.0  
sp|Q8NT25|RPOC_CORGL Tax_Id=1718 (rpoC)RecName: Full=DNA-directe...  1806   0.0  
sp|A4QBG3|RPOC_CORGB Tax_Id=340322 (rpoC)RecName: Full=DNA-direc...  1805   0.0  
sp|A8M538|RPOC_SALAI Tax_Id=391037 (rpoC)RecName: Full=DNA-direc...  1804   0.0  
tr|C2CPX2|C2CPX2_CORST Tax_Id=525268 (rpoC)RecName: Full=DNA-dir...  1801   0.0  

>sp|B2HSJ4|RPOC_MYCMM Tax_Id=216594 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            marinum]
          Length = 1316

 Score = 2489 bits (6452), Expect = 0.0
 Identities = 1267/1316 (96%), Positives = 1268/1316 (96%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL
Sbjct: 181  LAELEAEGAKADARRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQ             
Sbjct: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD
Sbjct: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG
Sbjct: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
Sbjct: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV
Sbjct: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 961  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL
Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP
Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316


>sp|A0PM25|RPOC_MYCUA Tax_Id=362242 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            ulcerans]
          Length = 1316

 Score = 2477 bits (6420), Expect = 0.0
 Identities = 1261/1316 (95%), Positives = 1263/1316 (95%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL
Sbjct: 181  LAELEAEGAKADARRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQ             
Sbjct: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRP+VQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPLVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA QDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIED LFGHNGWQPGD
Sbjct: 601  PAVQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDELFGHNGWQPGD 660

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG
Sbjct: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
Sbjct: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV
Sbjct: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 961  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFY I IVPDDGGEEVVYDKL
Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYTIAIVPDDGGEEVVYDKL 1080

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP
Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            GTGINRYRNIAVQPTEEAR AAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1261 GTGINRYRNIAVQPTEEARVAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316


>sp|Q73SE3|RPOC_MYCPA Tax_Id=1770 (rpoC)RecName: Full=DNA-directed RNA
            polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            paratuberculosis]
          Length = 1316

 Score = 2428 bits (6292), Expect = 0.0
 Identities = 1233/1316 (93%), Positives = 1247/1316 (94%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVITSVD EMRHNELSTLEAEMMVERKAVEDQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRDSGEREMRQ+RDRAQRELDRLEDIW+TFTKLAPKQLIVDENL
Sbjct: 181  LAELEAEGAKADARRKVRDSGEREMRQIRDRAQRELDRLEDIWNTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIQKLIE FDIDAEAE LRDVIRNGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAEQLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKG Y 
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGEYS 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA +D PETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIE  LFG NGWQPGD
Sbjct: 601  PAAKDRPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD 660

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AW AETTLGRVLFNELLP+GY FVNKQMHKKVQA+IINDLAERYPMIVVAQTVDKLKD+G
Sbjct: 661  AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQASIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPPRKKEILD YEERAEKVEKQFQRGALNHDERNEALVEIWKE
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI+VE
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIVVE 900

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAERQ DGTLIRDPYIETSAYARTLG DAVDEAGNV+VARGEDLGDPEI+A LAAGIT V
Sbjct: 901  LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVARGEDLGDPEIDALLAAGITSV 960

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 961  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            GEDITGGLPRVQELFEAR+PRGKAPIADVTGRVRLEDGERFYKITIVPDDG EEVVYDKL
Sbjct: 1021 GEDITGGLPRVQELFEARIPRGKAPIADVTGRVRLEDGERFYKITIVPDDGSEEVVYDKL 1080

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLIDRAEFEAENRRVVAE GEP
Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            GTGINRYRNI VQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1261 GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316


>sp|A0QL48|RPOC_MYCA1 Tax_Id=243243 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            avium]
          Length = 1316

 Score = 2427 bits (6290), Expect = 0.0
 Identities = 1232/1316 (93%), Positives = 1248/1316 (94%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVITSVD EMRHNELSTLEAEMMVERKAVEDQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRDSGEREMRQ+RDRAQRELDRLEDIW+TFTKLAPKQLIVDENL
Sbjct: 181  LAELEAEGAKADARRKVRDSGEREMRQIRDRAQRELDRLEDIWNTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIQKLIE FDIDAEAE LRDVIRNGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAEQLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKG Y+
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGEYR 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA +D+PE GVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIE  LFG NGWQPGD
Sbjct: 601  PAAKDTPEVGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEAELFGANGWQPGD 660

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AW AETTLGRVLFNELLP+GY FVNKQMHKKVQA+IINDLAERYPMIVVAQTVDKLKD+G
Sbjct: 661  AWMAETTLGRVLFNELLPVGYPFVNKQMHKKVQASIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPPRKKEILD YEERAEKVEKQFQRGALNHDERNEALVEIWKE
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDQYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI+VE
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGIVVE 900

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAERQ DGTLIRDPYIETSAYARTLG DAVDEAGNV+VARGEDLGDPEI+A LAAGIT V
Sbjct: 901  LAERQPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVARGEDLGDPEIDALLAAGITSV 960

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 961  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            GEDITGGLPRVQELFEAR+PRGKAPIADVTGRVRLEDGERFYKITIVPDDG EEVVYDKL
Sbjct: 1021 GEDITGGLPRVQELFEARIPRGKAPIADVTGRVRLEDGERFYKITIVPDDGSEEVVYDKL 1080

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLIDRAEFEAENRRVVAE GEP
Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            GTGINRYRNI VQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1261 GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316


>sp|P0A674|RPOC_MYCTU Tax_Id=1773 (rpoC)RecName: Full=DNA-directed RNA
            polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            tuberculosis]
          Length = 1316

 Score = 2416 bits (6261), Expect = 0.0
 Identities = 1227/1316 (93%), Positives = 1241/1316 (94%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVITSVD EMRHNELSTLEAEM VERKAVEDQRD +LEAR       
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRD GEREMRQ+RDRAQRELDRLEDIWSTFTKLAPKQLIVDENL
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIQKLIE FDIDAEAE LRDVIRNGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEV GD G YQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA  D PETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPP EIE  LFGH+GWQPGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AW AETTLGRV+FNELLPLGY FVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD+G
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVGQALREHYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGI+VE
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAER  DGTLIRDPYIETSAYARTLG DAVDEAGNV+V RG+DLGDPEI+A LAAGITQV
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+
Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLIDRAEFEAENRRVVAE GEP
Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>sp|A5U053|RPOC_MYCTA Tax_Id=419947 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            tuberculosis]
          Length = 1316

 Score = 2416 bits (6261), Expect = 0.0
 Identities = 1227/1316 (93%), Positives = 1241/1316 (94%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVITSVD EMRHNELSTLEAEM VERKAVEDQRD +LEAR       
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRD GEREMRQ+RDRAQRELDRLEDIWSTFTKLAPKQLIVDENL
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIQKLIE FDIDAEAE LRDVIRNGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEV GD G YQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA  D PETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPP EIE  LFGH+GWQPGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AW AETTLGRV+FNELLPLGY FVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD+G
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVGQALREHYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGI+VE
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAER  DGTLIRDPYIETSAYARTLG DAVDEAGNV+V RG+DLGDPEI+A LAAGITQV
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+
Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLIDRAEFEAENRRVVAE GEP
Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>sp|P0A675|RPOC_MYCBO Tax_Id=1765 (rpoC)RecName: Full=DNA-directed RNA
            polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            bovis]
          Length = 1316

 Score = 2416 bits (6261), Expect = 0.0
 Identities = 1227/1316 (93%), Positives = 1241/1316 (94%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVITSVD EMRHNELSTLEAEM VERKAVEDQRD +LEAR       
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRD GEREMRQ+RDRAQRELDRLEDIWSTFTKLAPKQLIVDENL
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIQKLIE FDIDAEAE LRDVIRNGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEV GD G YQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA  D PETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPP EIE  LFGH+GWQPGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AW AETTLGRV+FNELLPLGY FVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD+G
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVGQALREHYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGI+VE
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAER  DGTLIRDPYIETSAYARTLG DAVDEAGNV+V RG+DLGDPEI+A LAAGITQV
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+
Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLIDRAEFEAENRRVVAE GEP
Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>tr|C6DUI1|C6DUI1_MYCTK Tax_Id=478434 RecName: Full=DNA-directed RNA
            polymerase; EC=2.7.7.6;[Mycobacterium tuberculosis]
          Length = 1316

 Score = 2416 bits (6261), Expect = 0.0
 Identities = 1227/1316 (93%), Positives = 1241/1316 (94%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVITSVD EMRHNELSTLEAEM VERKAVEDQRD +LEAR       
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRD GEREMRQ+RDRAQRELDRLEDIWSTFTKLAPKQLIVDENL
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIQKLIE FDIDAEAE LRDVIRNGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEV GD G YQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA  D PETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPP EIE  LFGH+GWQPGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AW AETTLGRV+FNELLPLGY FVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD+G
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVGQALREHYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGI+VE
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAER  DGTLIRDPYIETSAYARTLG DAVDEAGNV+V RG+DLGDPEI+A LAAGITQV
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+
Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLIDRAEFEAENRRVVAE GEP
Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>tr|A5WK36|A5WK36_MYCTF Tax_Id=336982 RecName: Full=DNA-directed RNA
            polymerase; EC=2.7.7.6;[Mycobacterium tuberculosis]
          Length = 1316

 Score = 2416 bits (6261), Expect = 0.0
 Identities = 1227/1316 (93%), Positives = 1241/1316 (94%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVITSVD EMRHNELSTLEAEM VERKAVEDQRD +LEAR       
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRD GEREMRQ+RDRAQRELDRLEDIWSTFTKLAPKQLIVDENL
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIQKLIE FDIDAEAE LRDVIRNGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEV GD G YQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA  D PETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPP EIE  LFGH+GWQPGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AW AETTLGRV+FNELLPLGY FVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD+G
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVGQALREHYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGI+VE
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAER  DGTLIRDPYIETSAYARTLG DAVDEAGNV+V RG+DLGDPEI+A LAAGITQV
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+
Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLIDRAEFEAENRRVVAE GEP
Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>sp|A1KGE8|RPOC_MYCBP Tax_Id=410289 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            bovis]
          Length = 1316

 Score = 2413 bits (6254), Expect = 0.0
 Identities = 1226/1316 (93%), Positives = 1240/1316 (94%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRV FKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVPFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVITSVD EMRHNELSTLEAEM VERKAVEDQRD +LEAR       
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRD GEREMRQ+RDRAQRELDRLEDIWSTFTKLAPKQLIVDENL
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIQKLIE FDIDAEAE LRDVIRNGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEV GD G YQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA  D PETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPP EIE  LFGH+GWQPGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AW AETTLGRV+FNELLPLGY FVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD+G
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVGQALREHYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGI+VE
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAER  DGTLIRDPYIETSAYARTLG DAVDEAGNV+V RG+DLGDPEI+A LAAGITQV
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+
Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLIDRAEFEAENRRVVAE GEP
Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>sp|C1AL01|RPOC_MYCBT Tax_Id=561275 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            bovis]
          Length = 1316

 Score = 2412 bits (6250), Expect = 0.0
 Identities = 1225/1316 (93%), Positives = 1239/1316 (94%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKR  FKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRAPFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVITSVD EMRHNELSTLEAEM VERKAVEDQRD +LEAR       
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRD GEREMRQ+RDRAQRELDRLEDIWSTFTKLAPKQLIVDENL
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIQKLIE FDIDAEAE LRDVIRNGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEV GD G YQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPGDTGEYQ 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA  D PETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPP EIE  LFGH+GWQPGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AW AETTLGRV+FNELLPLGY FVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD+G
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVGQALREHYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGI+VE
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAER  DGTLIRDPYIETSAYARTLG DAVDEAGNV+V RG+DLGDPEI+A LAAGITQV
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+
Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLIDRAEFEAENRRVVAE GEP
Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFG ATGAAVPLDDYGYSDYR
Sbjct: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSDYR 1316


>sp|P30761|RPOC_MYCLE Tax_Id=1769 (rpoC)RecName: Full=DNA-directed RNA
            polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            leprae]
          Length = 1316

 Score = 2383 bits (6177), Expect = 0.0
 Identities = 1208/1316 (91%), Positives = 1241/1316 (94%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVIT+VD EMRHNELSTLEAEMMVERK+VEDQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRK RD GEREMRQLR+RAQRELDRLEDIWSTFTKLAPKQLIVDENL
Sbjct: 181  LAALEAEGAKADARRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIQKL++ FDI+AEAE LR+VIRNGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT V+GD GAY+
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA +D PE+GVYSSPAEAIMAADRGVLSVRAKIKV+LTQ+RPPA+IE   FG NGW+PGD
Sbjct: 601  PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
             W A+TTLGRV+FNELLPLGY FVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD+G
Sbjct: 661  PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVGQALR+HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGI+VE
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LA R  DG+LIR+ YIETSAYARTLGA+AVDEAGNV+VARGEDLGDPEI+A LAAGITQV
Sbjct: 901  LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 961  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL
Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRVFKH DGSERVLSDGD+VEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
Sbjct: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLIDRAEFE+ENRRVVAESGEP
Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            GTGINRYRNI VQPTEEARA+AYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316


>sp|B8ZSC6|RPOC_MYCLB Tax_Id=561304 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            leprae]
          Length = 1316

 Score = 2383 bits (6177), Expect = 0.0
 Identities = 1208/1316 (91%), Positives = 1241/1316 (94%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVIT+VD EMRHNELSTLEAEMMVERK+VEDQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVITTVDEEMRHNELSTLEAEMMVERKSVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRK RD GEREMRQLR+RAQRELDRLEDIWSTFTKLAPKQLIVDENL
Sbjct: 181  LAALEAEGAKADARRKFRDGGEREMRQLRERAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIQKL++ FDI+AEAE LR+VIRNGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLMQDFDIEAEAESLREVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAP+IIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPDIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT V+GD GAY+
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTAVDGDTGAYR 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA +D PE+GVYSSPAEAIMAADRGVLSVRAKIKV+LTQ+RPPA+IE   FG NGW+PGD
Sbjct: 601  PAAEDRPESGVYSSPAEAIMAADRGVLSVRAKIKVQLTQVRPPADIEARWFGANGWRPGD 660

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
             W A+TTLGRV+FNELLPLGY FVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD+G
Sbjct: 661  PWIADTTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVGQALR+HYP DNPIITIVDSGATGNFTQTR LAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALRDHYPVDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGI+VE
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LA R  DG+LIR+ YIETSAYARTLGA+AVDEAGNV+VARGEDLGDPEI+A LAAGITQV
Sbjct: 901  LAVRVPDGSLIRELYIETSAYARTLGANAVDEAGNVIVARGEDLGDPEIDALLAAGITQV 960

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 961  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL
Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRVFKH DGSERVLSDGD+VEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
Sbjct: 1081 SKRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLIDRAEFE+ENRRVVAESGEP
Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFESENRRVVAESGEP 1200

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            GTGINRYRNI VQPTEEARA+AYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1261 GTGINRYRNIQVQPTEEARASAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316


>sp|Q1BDE9|RPOC_MYCSS Tax_Id=164756 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            sp.]
          Length = 1315

 Score = 2287 bits (5927), Expect = 0.0
 Identities = 1158/1316 (87%), Positives = 1211/1316 (92%), Gaps = 1/1316 (0%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVIT V++EMRHNELSTLEAEM+VE+KAVEDQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVITDVNDEMRHNELSTLEAEMVVEKKAVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRD GEREMRQLRDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIE FDI+AEAE LR+ IR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIKKLIENFDIEAEAENLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLY+LTT +EGDKG Y+
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTTMIEGDKGEYR 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA  D PE GVYSSPAEAIMA DRG LSVRAKIKVRLTQLRPPA +E  LF  NGW+PG 
Sbjct: 601  PAATDQPEEGVYSSPAEAIMAMDRGALSVRAKIKVRLTQLRPPAALEAELF-ENGWKPGL 659

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AWTAETTLGRV+FNELLP+ Y F+N+QMHKKVQA IINDLAER+PMIVVAQTVDKLKD+G
Sbjct: 660  AWTAETTLGRVMFNELLPISYPFINEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            F+WATRSGVTVSMADVLVPP+K+EILD YE  A+ +E+++QRGALNH ERN++LV+IW++
Sbjct: 720  FHWATRSGVTVSMADVLVPPQKQEILDRYEAEADGIERKYQRGALNHKERNDSLVKIWQD 779

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            AT+EVG+AL EHYPADNPIITIV SGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
Sbjct: 780  ATEEVGKALEEHYPADNPIITIVKSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAERQ DG+LIRDP++ETSA+ARTL  DAVD  GNVV+ RG DLGDP I+  LAAGI  V
Sbjct: 900  LAERQPDGSLIRDPHVETSAFARTLATDAVDADGNVVIERGHDLGDPAIDKLLAAGIDHV 959

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 960  KVRSVLTCASATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            GEDITGGLPRVQELFEARVPR KAPIADV+GRV+LE+GERFYKITIVPDDGGEEVVYDKL
Sbjct: 1020 GEDITGGLPRVQELFEARVPRNKAPIADVSGRVQLEEGERFYKITIVPDDGGEEVVYDKL 1079

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRV KHEDGSE VLSDGDHVEVG QLMEGSADPHEVLRVQGPREVQIHLV EVQE
Sbjct: 1080 SKRQRLRVIKHEDGSEGVLSDGDHVEVGDQLMEGSADPHEVLRVQGPREVQIHLVHEVQE 1139

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSL +RAEFE+ENRRVVAE GEP
Sbjct: 1140 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVAEGGEP 1199

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIPA
Sbjct: 1200 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIPA 1259

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            GTGINRYRNI VQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1260 GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1315


>sp|A1UBJ4|RPOC_MYCSK Tax_Id=189918 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            sp.]
          Length = 1315

 Score = 2287 bits (5927), Expect = 0.0
 Identities = 1158/1316 (87%), Positives = 1211/1316 (92%), Gaps = 1/1316 (0%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVIT V++EMRHNELSTLEAEM+VE+KAVEDQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVITDVNDEMRHNELSTLEAEMVVEKKAVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRD GEREMRQLRDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIE FDI+AEAE LR+ IR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIKKLIENFDIEAEAENLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLY+LTT +EGDKG Y+
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTTMIEGDKGEYR 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA  D PE GVYSSPAEAIMA DRG LSVRAKIKVRLTQLRPPA +E  LF  NGW+PG 
Sbjct: 601  PAATDQPEEGVYSSPAEAIMAMDRGALSVRAKIKVRLTQLRPPAALEAELF-ENGWKPGL 659

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AWTAETTLGRV+FNELLP+ Y F+N+QMHKKVQA IINDLAER+PMIVVAQTVDKLKD+G
Sbjct: 660  AWTAETTLGRVMFNELLPISYPFINEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            F+WATRSGVTVSMADVLVPP+K+EILD YE  A+ +E+++QRGALNH ERN++LV+IW++
Sbjct: 720  FHWATRSGVTVSMADVLVPPQKQEILDRYEAEADGIERKYQRGALNHKERNDSLVKIWQD 779

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            AT+EVG+AL EHYPADNPIITIV SGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
Sbjct: 780  ATEEVGKALEEHYPADNPIITIVKSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAERQ DG+LIRDP++ETSA+ARTL  DAVD  GNVV+ RG DLGDP I+  LAAGI  V
Sbjct: 900  LAERQPDGSLIRDPHVETSAFARTLATDAVDADGNVVIERGHDLGDPAIDKLLAAGIDHV 959

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 960  KVRSVLTCASATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            GEDITGGLPRVQELFEARVPR KAPIADV+GRV+LE+GERFYKITIVPDDGGEEVVYDKL
Sbjct: 1020 GEDITGGLPRVQELFEARVPRNKAPIADVSGRVQLEEGERFYKITIVPDDGGEEVVYDKL 1079

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRV KHEDGSE VLSDGDHVEVG QLMEGSADPHEVLRVQGPREVQIHLV EVQE
Sbjct: 1080 SKRQRLRVIKHEDGSEGVLSDGDHVEVGDQLMEGSADPHEVLRVQGPREVQIHLVHEVQE 1139

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSL +RAEFE+ENRRVVAE GEP
Sbjct: 1140 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVAEGGEP 1199

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIPA
Sbjct: 1200 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIPA 1259

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            GTGINRYRNI VQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1260 GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1315


>sp|A3PV79|RPOC_MYCSJ Tax_Id=164757 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            sp.]
          Length = 1315

 Score = 2287 bits (5927), Expect = 0.0
 Identities = 1158/1316 (87%), Positives = 1211/1316 (92%), Gaps = 1/1316 (0%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVIT V++EMRHNELSTLEAEM+VE+KAVEDQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVITDVNDEMRHNELSTLEAEMVVEKKAVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRD GEREMRQLRDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDEVL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESI+KLIE FDI+AEAE LR+ IR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIKKLIENFDIEAEAENLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLY+LTT +EGDKG Y+
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYFLTTMIEGDKGEYR 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA  D PE GVYSSPAEAIMA DRG LSVRAKIKVRLTQLRPPA +E  LF  NGW+PG 
Sbjct: 601  PAATDQPEEGVYSSPAEAIMAMDRGALSVRAKIKVRLTQLRPPAALEAELF-ENGWKPGL 659

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AWTAETTLGRV+FNELLP+ Y F+N+QMHKKVQA IINDLAER+PMIVVAQTVDKLKD+G
Sbjct: 660  AWTAETTLGRVMFNELLPISYPFINEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            F+WATRSGVTVSMADVLVPP+K+EILD YE  A+ +E+++QRGALNH ERN++LV+IW++
Sbjct: 720  FHWATRSGVTVSMADVLVPPQKQEILDRYEAEADGIERKYQRGALNHKERNDSLVKIWQD 779

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            AT+EVG+AL EHYPADNPIITIV SGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
Sbjct: 780  ATEEVGKALEEHYPADNPIITIVKSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAERQ DG+LIRDP++ETSA+ARTL  DAVD  GNVV+ RG DLGDP I+  LAAGI  V
Sbjct: 900  LAERQPDGSLIRDPHVETSAFARTLATDAVDADGNVVIERGHDLGDPAIDKLLAAGIDHV 959

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 960  KVRSVLTCASATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            GEDITGGLPRVQELFEARVPR KAPIADV+GRV+LE+GERFYKITIVPDDGGEEVVYDKL
Sbjct: 1020 GEDITGGLPRVQELFEARVPRNKAPIADVSGRVQLEEGERFYKITIVPDDGGEEVVYDKL 1079

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRV KHEDGSE VLSDGDHVEVG QLMEGSADPHEVLRVQGPREVQIHLV EVQE
Sbjct: 1080 SKRQRLRVIKHEDGSEGVLSDGDHVEVGDQLMEGSADPHEVLRVQGPREVQIHLVHEVQE 1139

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSL +RAEFE+ENRRVVAE GEP
Sbjct: 1140 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVAEGGEP 1199

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIPA
Sbjct: 1200 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLIPA 1259

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            GTGINRYRNI VQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1260 GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1315


>sp|A1T4J3|RPOC_MYCVP Tax_Id=350058 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            vanbaalenii]
          Length = 1317

 Score = 2287 bits (5926), Expect = 0.0
 Identities = 1158/1318 (87%), Positives = 1209/1318 (91%), Gaps = 3/1318 (0%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVIT+VD+EMRHNELSTLEAEM VERKA+EDQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMAVERKAIEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         +RKVRD GEREMRQLRDRAQRELDRLE+IW+TFTKLAPKQLIVDE L
Sbjct: 181  MKELEDEGAKSDVKRKVRDGGEREMRQLRDRAQRELDRLEEIWTTFTKLAPKQLIVDELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YRELQDRYGEYF GAMGAESI+KLIE FDIDAEAE LRD I+NGKGQ             
Sbjct: 241  YRELQDRYGEYFEGAMGAESIKKLIENFDIDAEAESLRDTIKNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTTE+EGD G + 
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIEGDTGEFT 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA +D PE+GVYSSPAEAIMA DRG LSVRAKI+VRLTQLRPPAEIE   F  +GW  GD
Sbjct: 601  PAAKDQPESGVYSSPAEAIMALDRGALSVRAKIRVRLTQLRPPAEIEAERF-PDGWNMGD 659

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AWTAETTLGRVLFNELLP GY FVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD+G
Sbjct: 660  AWTAETTLGRVLFNELLPRGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 719

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPP K+EIL+ YE  A+ +EKQ+QRG LN DERNEALV+IW++
Sbjct: 720  FYWATRSGVTVSMADVLVPPEKQEILERYEAEADSIEKQYQRGKLNKDERNEALVKIWQD 779

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            AT+EVGQALR HYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
Sbjct: 780  ATEEVGQALRSHYPKDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC+TERGI V 
Sbjct: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGITVT 899

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAE+Q DGTL+RD +IETSAYARTL  DAVD  GNV+V RG DLGDP I+A LAAGIT+V
Sbjct: 900  LAEKQADGTLVRDQHIETSAYARTLATDAVDAKGNVIVERGHDLGDPAIDALLAAGITEV 959

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 960  KVRSVLTCGTGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019

Query: 1021 --GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078
              G DI GGLPRVQELFEAR+PR +APIADV+GR+RLE+ ++FYKITIVPDDGGEEVVYD
Sbjct: 1020 TGGADIVGGLPRVQELFEARIPRNRAPIADVSGRIRLEESDKFYKITIVPDDGGEEVVYD 1079

Query: 1079 KLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138
            KLS+RQRL+VFKH+DGSER+L+DGDHVEVGQQL+EGSADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1080 KLSRRQRLKVFKHDDGSERLLTDGDHVEVGQQLLEGSADPHEVLRVQGPREVQIHLVKEV 1139

Query: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESG 1198
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSL +R EFE ENRRVVAE G
Sbjct: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETENRRVVAEGG 1199

Query: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLI
Sbjct: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLI 1259

Query: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            PAGTGINRYRNI VQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1260 PAGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317


>sp|A4T1P3|RPOC_MYCGI Tax_Id=350054 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            gilvum]
          Length = 1316

 Score = 2274 bits (5894), Expect = 0.0
 Identities = 1155/1318 (87%), Positives = 1209/1318 (91%), Gaps = 4/1318 (0%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVIT+VD+EMRHNELSTLEAEM+VE+KA+EDQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMVVEKKAIEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRD GEREMRQLRDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  MKELEEEGAKSDVRRKVRDGGEREMRQLRDRAQRELDRLDEIWTTFTKLAPKQLIVDELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YRELQDRYGEYF GAMGAESI+KLIETFDIDAEA+ LRD I+NGKGQ             
Sbjct: 241  YRELQDRYGEYFEGAMGAESIKKLIETFDIDAEADSLRDTIKNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + NSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVI+EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTTE+EGDKG + 
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIEGDKGEFT 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA +D PE+GVYSSPAEAIMA DRG LSVRAKI+VRLTQLRPPAEIE   F  +GW  GD
Sbjct: 601  PAAKDQPESGVYSSPAEAIMAMDRGALSVRAKIRVRLTQLRPPAEIEAERF-PDGWNMGD 659

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AWTAETTLGRVLFNELLP GY FVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD+G
Sbjct: 660  AWTAETTLGRVLFNELLPRGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 719

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPP K+EIL+ YE  A+ +EKQ+QRG L+  ERNEALV+IW++
Sbjct: 720  FYWATRSGVTVSMADVLVPPEKQEILERYEAAADSIEKQYQRGKLDKGERNEALVKIWQD 779

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            AT+EVGQALR HYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
Sbjct: 780  ATEEVGQALRSHYPKDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC+TERGI V 
Sbjct: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCETERGITVT 899

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAE QGD  L+RD +IETSAYARTL  DAVD  GNVVV RG DLGDP I+A LAAGIT+V
Sbjct: 900  LAELQGD-QLLRDQHIETSAYARTLATDAVDANGNVVVERGHDLGDPAIDALLAAGITEV 958

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 959  KVRSVLTCATGTGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1018

Query: 1021 --GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078
              G DI GGLPRVQELFEAR+PR +APIADV+GR+RLE+ ++FYKITIVPDDGGEEVVYD
Sbjct: 1019 TGGADIVGGLPRVQELFEARIPRNRAPIADVSGRIRLEESDKFYKITIVPDDGGEEVVYD 1078

Query: 1079 KLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138
            KLS+RQRL+VFKH+DGSER+L+DGDHVEVGQQL+EGSADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1079 KLSRRQRLKVFKHDDGSERLLTDGDHVEVGQQLLEGSADPHEVLRVQGPREVQIHLVKEV 1138

Query: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESG 1198
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSL +R EFE ENRRVVAE G
Sbjct: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERGEFETENRRVVAEGG 1198

Query: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLI
Sbjct: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLQGLKENVIIGKLI 1258

Query: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            PAGTGINRYRNI VQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1259 PAGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316


>sp|A0QS66|RPOC_MYCS2 Tax_Id=246196 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            smegmatis]
          Length = 1317

 Score = 2274 bits (5893), Expect = 0.0
 Identities = 1156/1318 (87%), Positives = 1209/1318 (91%), Gaps = 3/1318 (0%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVITSVD+EMRHNELSTLEAEM VE+KAVEDQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVITSVDDEMRHNELSTLEAEMAVEKKAVEDQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRDSGEREMRQLRDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKSDVRRKVRDSGEREMRQLRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YRELQDRYGEYFTGAMGAESI+KLIE FDIDAEAE LR+VIR+GKGQ             
Sbjct: 241  YRELQDRYGEYFTGAMGAESIKKLIENFDIDAEAESLREVIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASG+PLAMPRLDMVTGLYYLTT VEG  G YQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGKPLAMPRLDMVTGLYYLTTLVEGATGEYQ 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
             A +D+PE GVYSSPAEAIMA DRG LSVRAKIKVRLT+LRPP ++E  LF  NGW+PGD
Sbjct: 601  AATKDAPEQGVYSSPAEAIMAMDRGALSVRAKIKVRLTELRPPTDLEAQLF-ENGWKPGD 659

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AWTAETTLGRV+FNELLP  Y FVN+QMHKKVQA IINDLAER+PMIVVAQTVDKLKD+G
Sbjct: 660  AWTAETTLGRVMFNELLPKSYPFVNEQMHKKVQARIINDLAERFPMIVVAQTVDKLKDAG 719

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPP+K+EIL+ +E  A+ +E+++QRGALNH ERNE+LV+IW++
Sbjct: 720  FYWATRSGVTVSMADVLVPPQKQEILERHEAEADAIERKYQRGALNHTERNESLVKIWQD 779

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            AT+EVG+AL E YPADNPIITIV SGATGN TQTRTLAGMKGLVTNPKGEFIPRPIKSSF
Sbjct: 780  ATEEVGKALEEFYPADNPIITIVKSGATGNLTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC+TERGI V 
Sbjct: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCETERGINVT 899

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAER  DGTLIRD ++ETSA+ARTL  DAVD  GNV++ RG DLGDP I+A LAAGIT V
Sbjct: 900  LAERGPDGTLIRDAHVETSAFARTLATDAVDANGNVIIERGHDLGDPAIDALLAAGITTV 959

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 960  KVRSVLTCTSATGVCAMCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019

Query: 1021 --GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078
              G DI GGLPRVQELFEARVPR KAPIADV GRVRLE+ ++F+KITIVPDDGGEEVVYD
Sbjct: 1020 TGGADIVGGLPRVQELFEARVPRNKAPIADVAGRVRLEESDKFFKITIVPDDGGEEVVYD 1079

Query: 1079 KLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138
            KLSKRQRLRV  HEDG+E VLSDGDHVEVG QLMEG+ADPHEVLRVQGPREVQIHLV+EV
Sbjct: 1080 KLSKRQRLRVITHEDGTEGVLSDGDHVEVGDQLMEGAADPHEVLRVQGPREVQIHLVKEV 1139

Query: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESG 1198
            QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFEAENRRVVAE G
Sbjct: 1140 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGG 1199

Query: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI
Sbjct: 1200 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1259

Query: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            PAGTGI+RYRNI VQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
Sbjct: 1260 PAGTGISRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1317


>sp|B1MH61|RPOC_MYCA9 Tax_Id=561007 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Mycobacterium
            abscessus]
          Length = 1319

 Score = 2257 bits (5848), Expect = 0.0
 Identities = 1145/1320 (86%), Positives = 1200/1320 (90%), Gaps = 5/1320 (0%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLA+A+DIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLASADDIRNWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVIT+VD+E+RHNELSTLEAEM VE+KAV DQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRD GEREMRQLRDR+QRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKSDVRRKVRDGGEREMRQLRDRSQRELDRLDEIWTTFTKLAPKQLIVDEVL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAE++QKLI+ FD+DAEAE LR+ IR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAEAVQKLIQNFDLDAEAENLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ S NSP GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQNSTNSPGGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
             QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTTE+ GD GA+ 
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIPGDIGAHA 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PAG+D PE GVYSSPAEAIMA DRG LSVRA I+VRLTQ RPPAE+E  LF  NGWQPGD
Sbjct: 601  PAGKDQPEVGVYSSPAEAIMAMDRGALSVRAPIRVRLTQQRPPAEVEAELF-ENGWQPGD 659

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AW AETTLGRVLFNELLP GY FVNKQMHKKVQ+AIINDLAER+PMIVVAQTVDKLKD+G
Sbjct: 660  AWVAETTLGRVLFNELLPHGYPFVNKQMHKKVQSAIINDLAERFPMIVVAQTVDKLKDAG 719

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            F+WATRSGVTVSMADVLVPP+K EILD YE+ AE++EKQ+QRGALN  ER +ALV+IW+E
Sbjct: 720  FHWATRSGVTVSMADVLVPPQKAEILDRYEKEAERIEKQYQRGALNQQERRDALVKIWQE 779

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVG+AL EHYPADNPI  +  SGATGN TQ R LAGMKGLVTNPKGE+IPRPIKSSF
Sbjct: 780  ATDEVGKALEEHYPADNPITLLPKSGATGNMTQVRNLAGMKGLVTNPKGEYIPRPIKSSF 839

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC TERGI V 
Sbjct: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGINVV 899

Query: 901  LAERQ----GDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAG 956
            +AE+Q    G  TLIRD +IETSAYARTL ADAVD  GNV+V RG DLGDP IE  LAAG
Sbjct: 900  IAEKQTGPDGKATLIRDAHIETSAYARTLAADAVDADGNVLVERGHDLGDPAIEKLLAAG 959

Query: 957  ITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFH 1016
            +T VKVRSVL              RSMATGKLVDIGEA GIVAAQSIGEPGTQLTMRTFH
Sbjct: 960  VTTVKVRSVLTCTTGTGVCAMCYGRSMATGKLVDIGEAAGIVAAQSIGEPGTQLTMRTFH 1019

Query: 1017 QGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVV 1076
            QGGVG+DITGGLPRV ELFEARVP+GKAPIADVTGRVRLE+GERFYKITIVPDDGGEEVV
Sbjct: 1020 QGGVGDDITGGLPRVTELFEARVPKGKAPIADVTGRVRLEEGERFYKITIVPDDGGEEVV 1079

Query: 1077 YDKLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVR 1136
            YDKLSKRQRLRVFKHEDGSER L+DGDHVEVGQQLMEG+ADPHEVLRV GPR+VQ+HLV 
Sbjct: 1080 YDKLSKRQRLRVFKHEDGSERPLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQVHLVN 1139

Query: 1137 EVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAE 1196
            EVQEVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSL +RAEFE+ENRRVVAE
Sbjct: 1140 EVQEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESENRRVVAE 1199

Query: 1197 SGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK 1256
             GEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK
Sbjct: 1200 GGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGK 1259

Query: 1257 LIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            LIPAGTGINRYRNI+VQPTEEARAAAYTIPSYEDQYYSPDFG  TGAAVPLDDYGYSDYR
Sbjct: 1260 LIPAGTGINRYRNISVQPTEEARAAAYTIPSYEDQYYSPDFGSNTGAAVPLDDYGYSDYR 1319


>tr|A4KEZ2|A4KEZ2_MYCTU Tax_Id=395095 RecName: Full=DNA-directed RNA
            polymerase; EC=2.7.7.6;[Mycobacterium tuberculosis str.
            Haarlem]
          Length = 1289

 Score = 2241 bits (5806), Expect = 0.0
 Identities = 1154/1284 (89%), Positives = 1172/1284 (91%), Gaps = 9/1284 (0%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVITSVD EMRHNELSTLEAEM VERKAVEDQRD +LEAR       
Sbjct: 121  APKDLEKIIYFAAYVITSVDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVRD GEREMRQ+RDRAQRELDRLEDIWSTFTKLAPKQLIVDENL
Sbjct: 181  LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIQKLIE FDIDAEAE LRDVIRNGKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAESLRDVIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEV  D G YQ
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVPEDTGEYQ 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA  D PETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPP EIE  LFGH+GWQPGD
Sbjct: 601  PASGDHPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPVEIEAELFGHSGWQPGD 660

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AW AETTLGRV+FNELLPLGY FVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD+G
Sbjct: 661  AWMAETTLGRVMFNELLPLGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG 720

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPPRKKEILD YEERA+KVEKQFQRGALNHDERNEALVEIWKE
Sbjct: 721  FYWATRSGVTVSMADVLVPPRKKEILDHYEERADKVEKQFQRGALNHDERNEALVEIWKE 780

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVGQALREHYP DNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP+KSSF
Sbjct: 781  ATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPVKSSF 840

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGI+VE
Sbjct: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE 900

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAER  DGTLIRDPYIETSAYARTLG DAVDEAGNV+V RG+DLGDPEI+A LAAGITQV
Sbjct: 901  LAERAPDGTLIRDPYIETSAYARTLGTDAVDEAGNVIVERGQDLGDPEIDALLAAGITQV 960

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 961  KVRSVLTCATSTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK+
Sbjct: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKI 1080

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
Sbjct: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSLIDRAEFEAENRRVVAE GEP
Sbjct: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP 1200

Query: 1201 AAGRPVLMG-ITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259
            AA      G   +              +  TRVLTDAAINCRSDKLNGLKENVIIGKLIP
Sbjct: 1201 AARPSGADGHHERRRWPPTRGCRRRRSRRPTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1260

Query: 1260 AGTGINRYRNIAVQPTEEARAAAY 1283
            AGT   RY     QP  + R AA+
Sbjct: 1261 AGT---RY-----QPLPQHRGAAH 1276


>sp|Q5YPE1|RPOC_NOCFA Tax_Id=37329 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Nocardia
            farcinica]
          Length = 1317

 Score = 2236 bits (5794), Expect = 0.0
 Identities = 1131/1318 (85%), Positives = 1199/1318 (90%), Gaps = 3/1318 (0%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVITSVD E+RHNELSTLEAEM VE+KAV DQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVITSVDEELRHNELSTLEAEMEVEKKAVADQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKV+D GEREMRQ+RDRAQRELDRL++IW+TFTKLAPKQLIVDE L
Sbjct: 181  LAELEAEGAKSDVRRKVKDGGEREMRQIRDRAQRELDRLDEIWNTFTKLAPKQLIVDEVL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIQKL+E FDIDAEAE LR+ IR GKGQ             
Sbjct: 241  YRELTDRYGEYFTGAMGAESIQKLMENFDIDAEAESLRETIRTGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ +GNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQANGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLT   EG KG Y+
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTRLEEGAKGEYR 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA  D+PE GVYSSPAEA MA DRG L+VR+KIKVRLT  RPP ++E  LF   GWQ GD
Sbjct: 601  PATADAPEFGVYSSPAEAQMAVDRGELTVRSKIKVRLTDQRPPKDVEAELF-PEGWQRGD 659

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AWT ETTLGRVLFNELLP  Y F+N+ M KK QA IINDLAERYPMIVVAQTVDKLKD+G
Sbjct: 660  AWTTETTLGRVLFNELLPADYPFINEPMPKKRQATIINDLAERYPMIVVAQTVDKLKDAG 719

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSM+DVLVPP K EI++ YE +++++EK++QRGAL+H ERN ALV+IW+E
Sbjct: 720  FYWATRSGVTVSMSDVLVPPEKAEIMERYEAQSDQIEKKYQRGALDHQERNNALVKIWQE 779

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            AT+EVG+ALR HYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
Sbjct: 780  ATEEVGKALRAHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 839

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDC TERGI+V 
Sbjct: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCGTERGIVVP 899

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            +AE+Q DG++IRDP++ETS YARTL ADAVD  GNV+VA+G DLGDP +EA L AGIT+V
Sbjct: 900  IAEKQPDGSIIRDPHVETSTYARTLAADAVDANGNVIVAKGADLGDPALEALLEAGITEV 959

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 960  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019

Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079
             G+DITGGLPRVQELFEARVP+GKAPIA+V+GRVRLED +RFYKITI+PDDGGEEVVYDK
Sbjct: 1020 AGDDITGGLPRVQELFEARVPKGKAPIAEVSGRVRLEDDDRFYKITIIPDDGGEEVVYDK 1079

Query: 1080 LSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139
            LSKRQRLRVFKH+DG+ER+LSDGDHVEVGQQL+EG+ADPHEVLRV GPR+VQ+HLV EVQ
Sbjct: 1080 LSKRQRLRVFKHDDGTERLLSDGDHVEVGQQLLEGAADPHEVLRVMGPRQVQVHLVHEVQ 1139

Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGE 1199
            EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPGSL +RAEFEA NRRVVAE GE
Sbjct: 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAANRRVVAEGGE 1199

Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259
            PA+GRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP
Sbjct: 1200 PASGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259

Query: 1260 AGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYSDYR 1316
            AGTGINRYRNI VQPTEEARAAAY +PSY+D YYSPD FG +TGAAVPLDDYG+SDYR
Sbjct: 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPDSFGSSTGAAVPLDDYGFSDYR 1317


>sp|Q0SFB4|RPOC_RHOSR Tax_Id=101510 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Rhodococcus
            sp.]
          Length = 1318

 Score = 2179 bits (5646), Expect = 0.0
 Identities = 1115/1319 (84%), Positives = 1178/1319 (89%), Gaps = 4/1319 (0%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLA+AEDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVI  VD E+RHNELSTLEAEM VE+K+V DQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKSVADQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKV+D GEREMRQLRDRAQRELDRL++IW+TFTKL+ KQLIVDE L
Sbjct: 181  IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIVDELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIQKL+E FDIDAEAE LR+ IR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLMENFDIDAEAENLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + NSPMGMVL+AVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQTNQNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
             QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LT   EG  G   
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTRLDEGAIGELA 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
             +  D  E GVYSSPAEA MA DRG L V+AKIKVRLTQ RPP +IE  LF   GW  GD
Sbjct: 601  ASTSDEAEQGVYSSPAEAQMAVDRGALVVQAKIKVRLTQQRPPRDIESELF-PEGWNYGD 659

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
             WTAETTLGRVLFNELLP  Y FVN+QM KK QA IINDLAERYPMIVVAQTVDKLKD+G
Sbjct: 660  GWTAETTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDAG 719

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVS++DVLVPP K +I++S+E +A+++EK++QRGALN  ERN ALV+IW E
Sbjct: 720  FYWATRSGVTVSISDVLVPPEKAQIMESFEAQADQIEKKYQRGALNKTERNSALVKIWSE 779

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVG+A+  H+P DNPI  IV SGA GN TQ R+LAGMKGLVTNPKGEFIPRPIKSSF
Sbjct: 780  ATDEVGKAMEAHFPDDNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSF 839

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            +EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI+  
Sbjct: 840  KEGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTT 899

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            +AE+Q DGTLIRD ++ETS YARTL ADAVDE GNV+V RG DLGDP I+A L AGITQV
Sbjct: 900  IAEKQADGTLIRDAHVETSTYARTLAADAVDENGNVIVERGHDLGDPAIDALLEAGITQV 959

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 960  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019

Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079
             G+DITGGLPRVQELFEARVP+GKAPIADV+GRV+LEDG+RFYKITIVPDDGGEEVVYDK
Sbjct: 1020 AGDDITGGLPRVQELFEARVPKGKAPIADVSGRVQLEDGDRFYKITIVPDDGGEEVVYDK 1079

Query: 1080 LSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139
            LSKRQRLRVFKH+DG+ER+L+DGDHVEVGQQLMEG+ADPHEVLRV GPR+VQIHLV EVQ
Sbjct: 1080 LSKRQRLRVFKHDDGTERLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQ 1139

Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGE 1199
            EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSL +RA+FEA NRRVVAE GE
Sbjct: 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERADFEAANRRVVAEGGE 1199

Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP
Sbjct: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259

Query: 1260 AGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1316
            AGTGINRYRNI VQPTEEARAAAY +PSY+DQYYSPD FGQ TGAAVPLDDYG+S DYR
Sbjct: 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSNDYR 1318


>sp|C1AYV8|RPOC_RHOOB Tax_Id=632772 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Rhodococcus
            opacus]
          Length = 1318

 Score = 2174 bits (5632), Expect = 0.0
 Identities = 1111/1319 (84%), Positives = 1178/1319 (89%), Gaps = 4/1319 (0%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLA+AEDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVI  VD E+RHNELSTLEAEM VE+K V DQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKTVADQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKV+D GEREMRQLRDRAQRELDRL++IW+TFTKL+ KQLIVDE L
Sbjct: 181  IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIVDELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIQKL+E+FDIDAEAE LR+ IR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQKLMESFDIDAEAENLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + NSPMGMVL+AVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQANQNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
             QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  AQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LT   EG  G   
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTRLDEGATGELA 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
             +  +  E GVYSSPAEA MA DRG L V+AKIKVRLTQ RPP +IE  LF   GW  GD
Sbjct: 601  ASTNEESEQGVYSSPAEAQMAVDRGALVVQAKIKVRLTQQRPPRDIEAELF-PEGWNYGD 659

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
             WTAETTLGRVLFNELLP  Y FVN+QM KK QA IINDLAERYPMIVVAQTVDKLKD+G
Sbjct: 660  GWTAETTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDAG 719

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVS++DVLVPP K +I++S+E +A+++EK++QRGALN  ERN ALV+IW E
Sbjct: 720  FYWATRSGVTVSISDVLVPPEKAQIMESFEAQADQIEKKYQRGALNKTERNSALVKIWSE 779

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVG+A+  H+P DNPI  IV SGA GN TQ R+LAGMKGLVTNPKGEFIPRPIKSSF
Sbjct: 780  ATDEVGKAMEAHFPDDNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSF 839

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            +EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI+  
Sbjct: 840  KEGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTT 899

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            +AE+Q DG++IRD ++ETS YARTL ADAVDE GNV+V RG DLGDP I+A L AGITQV
Sbjct: 900  IAEKQADGSMIRDAHVETSTYARTLAADAVDENGNVIVERGHDLGDPAIDALLEAGITQV 959

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 960  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019

Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079
             G+DITGGLPRVQELFEARVP+GKAPIADV+GRV+LEDG+RFYKITIVPDDGGEEVVYDK
Sbjct: 1020 AGDDITGGLPRVQELFEARVPKGKAPIADVSGRVQLEDGDRFYKITIVPDDGGEEVVYDK 1079

Query: 1080 LSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139
            LSKRQRLRVFKH+DG+ER+L+DGDHVEVGQQLMEG+ADPHEVLRV GPR+VQIHLV EVQ
Sbjct: 1080 LSKRQRLRVFKHDDGTERLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQ 1139

Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGE 1199
            EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSL +RA+FEA NRRVVAE GE
Sbjct: 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERADFEAANRRVVAEGGE 1199

Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP
Sbjct: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259

Query: 1260 AGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1316
            AGTGINRYRNI VQPTEEARAAAY +PSY+DQYYSPD FG+ TGAAVPLDDYG+S DYR
Sbjct: 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGRNTGAAVPLDDYGFSNDYR 1318


>tr|C2ALB8|C2ALB8_TSUPA Tax_Id=521096 RecName: Full=DNA-directed RNA
            polymerase; EC=2.7.7.6;[Tsukamurella paurometabola DSM
            20162]
          Length = 1318

 Score = 2160 bits (5596), Expect = 0.0
 Identities = 1094/1316 (83%), Positives = 1168/1316 (88%), Gaps = 3/1316 (0%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDEL+IGLATA+DIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELKIGLATADDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVIT VD E RHNE STLEAE+  E+K + DQRD DLE R       
Sbjct: 121  APKDLEKIIYFAAYVITEVDEEQRHNEQSTLEAEIESEKKVLADQRDVDLENRAKKLEDD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKV+D GEREMRQ+RDRAQR +D L++IW+TF KLAPK +IVDE L
Sbjct: 181  LAVLEAEGAKADQRRKVKDGGEREMRQIRDRAQRAIDELDEIWTTFVKLAPKDMIVDEKL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YRELQDRYGEYF GAMGAE+I+KLIE FDIDAEAEILR+VIR+GKGQ             
Sbjct: 241  YRELQDRYGEYFKGAMGAEAIKKLIENFDIDAEAEILREVIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSP+GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LTTE    +GAY 
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTTEKADAQGAYT 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
             A +D PETGVYSSPAEAIMA D G LS++A IKVRLT  RPPAEIE   F    W+ G 
Sbjct: 601  AAKKDQPETGVYSSPAEAIMAVDLGELSIQAPIKVRLTNQRPPAEIEAEQFD-GAWERGQ 659

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
            AWTAETTLGRVLFNELLP+ Y FV++QM KK QA IINDLAERYPMIVVAQTVDKLKDSG
Sbjct: 660  AWTAETTLGRVLFNELLPIDYPFVDEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDSG 719

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSM+DVLVPP KKEILD YEERA+ +E+++ RGAL   ER +ALVEIWK+
Sbjct: 720  FYWATRSGVTVSMSDVLVPPSKKEILDRYEERADGIERKYARGALTSGERRDALVEIWKQ 779

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATDEVG+A+ ++YP DNPI  I  SGATGN TQ R LAGMKGLVTNPKGEFIPRPIKSSF
Sbjct: 780  ATDEVGKAIDDYYPEDNPITMIPKSGATGNMTQVRNLAGMKGLVTNPKGEFIPRPIKSSF 839

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC T RGI+V 
Sbjct: 840  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCNTTRGIIVP 899

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            LAE Q DG+LIRD ++ETSAYARTL  DA D  GNV+V RG DLGDP+IEA L AGI +V
Sbjct: 900  LAEVQADGSLIRDAHVETSAYARTLAEDAKDAKGNVIVERGHDLGDPQIEALLEAGIAEV 959

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 960  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            G+DITGGLPRV ELFEARVP+GKAPIA+V+GR+RLED +RFY ITI PDDG EEVVYDK+
Sbjct: 1020 GDDITGGLPRVTELFEARVPKGKAPIAEVSGRIRLEDDDRFYTITITPDDGSEEVVYDKI 1079

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRVFKH+DG+ER+L+DGDHV+VGQQL+EG+ADPHEVLRV GPR+VQ+HLV EVQE
Sbjct: 1080 SKRQRLRVFKHDDGTERLLADGDHVQVGQQLLEGAADPHEVLRVMGPRQVQVHLVNEVQE 1139

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYR+QGVSIHDKHIE IVRQMLRRVTIIDSG+TEFLPGSL +RAEFEAENRRVVAE GEP
Sbjct: 1140 VYRSQGVSIHDKHIETIVRQMLRRVTIIDSGSTEFLPGSLTERAEFEAENRRVVAEGGEP 1199

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAIN RSDKL GLKENVIIGKLIPA
Sbjct: 1200 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINTRSDKLVGLKENVIIGKLIPA 1259

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD--FGQATGAAVPLDDYGYSD 1314
            GTGIN+YRNI VQPTEEARAAAY++P+++DQYY P+  FG  +GAAVPLDDYG+SD
Sbjct: 1260 GTGINKYRNIQVQPTEEARAAAYSVPTFDDQYYGPEGAFGAPSGAAVPLDDYGFSD 1315


>sp|C0ZVQ7|RPOC_RHOE4 Tax_Id=234621 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Rhodococcus
            erythropolis]
          Length = 1318

 Score = 2154 bits (5580), Expect = 0.0
 Identities = 1102/1319 (83%), Positives = 1168/1319 (88%), Gaps = 4/1319 (0%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLA+AEDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVI  VD E+RHNELSTLEAEM VE+K V DQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKTVADQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKV+D GEREMRQLRDRAQRELDRL++IW+TFTKL+ KQLI+DE L
Sbjct: 181  IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIIDELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIQ L++ FD+DAEAE LR+ IR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQILMQNFDLDAEAESLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ +GNSPMGMVL+AVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQTNGNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVER+R
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERKR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
             QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  VQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGL++LT   EG  G   
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLDEGVTGELV 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
                D  E GVYSSPAEA MA DRG LSV+A+IKVRLTQ RPP ++E+ LF   GW+ GD
Sbjct: 601  APTNDEAEQGVYSSPAEAQMAVDRGALSVQAQIKVRLTQQRPPRDLENELF-PEGWKYGD 659

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
             WTA TTLGRVLFNELLP  Y FVN+QM KK QA IINDLAERYPMIVVAQTVDKLKD G
Sbjct: 660  GWTATTTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDVG 719

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVS++DVLVPP K  I++ +E +A+K+EKQ+QRGAL+  ERN ALV IW+E
Sbjct: 720  FYWATRSGVTVSISDVLVPPEKPAIIEDFEAQADKIEKQYQRGALDKKERNSALVTIWQE 779

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATD+VG+A+  H+P  NPI  IV SGA GN TQ R+LAGMKGLVTNPKGEFIPRPIKSSF
Sbjct: 780  ATDKVGKAMEAHFPDSNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSF 839

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            +EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI+  
Sbjct: 840  KEGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTT 899

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            +AE+Q DGT+IRD ++ETS YARTL ADAVD  G V+V RG DLGDP I+A L AGIT V
Sbjct: 900  IAEKQADGTMIRDAHVETSTYARTLAADAVDANGTVIVERGHDLGDPAIDALLEAGITTV 959

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 960  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019

Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079
             G+DITGGLPRVQELFEARVP+GKAPIADVTGRV+LEDG+RFYKITIVPDDGGEEVVYDK
Sbjct: 1020 AGDDITGGLPRVQELFEARVPKGKAPIADVTGRVQLEDGDRFYKITIVPDDGGEEVVYDK 1079

Query: 1080 LSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139
            LSKRQRLRVFKH DG E +L+DGDHVEVGQQLMEG+ADPHEVLRV GPR+VQIHLV EVQ
Sbjct: 1080 LSKRQRLRVFKHADGRESLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQ 1139

Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGE 1199
            EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSL +RAEFE+ NRRVVAE GE
Sbjct: 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESANRRVVAEGGE 1199

Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP
Sbjct: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259

Query: 1260 AGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1316
            AGTGINRYRNI VQPTEEARAAAY +PSY+DQYYSPD FGQ TGAAVPLDDYG+S DYR
Sbjct: 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSNDYR 1318


>tr|D0L4Z5|D0L4Z5_GORB4 Tax_Id=526226 SubName: Full=DNA-directed RNA
            polymerase, beta' subunit;[Gordonia bronchialis]
          Length = 1318

 Score = 2153 bits (5579), Expect = 0.0
 Identities = 1096/1319 (83%), Positives = 1164/1319 (88%), Gaps = 4/1319 (0%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDEL+IGLATA+DI  WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELKIGLATADDIHNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVT+AKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTKAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVIT+VD+E+RHNELSTLEAEM VE+KAV DQRD DL  R       
Sbjct: 121  APKDLEKIIYFAAYVITAVDDELRHNELSTLEAEMEVEKKAVADQRDVDLNERQQKLEQD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKV+D  EREMR++RD AQRELD L+++W  FTKLAP+ LI+DE L
Sbjct: 181  LAELEAEGAKADVRRKVKDGAEREMRRMRDSAQRELDALDELWDKFTKLAPRDLIIDEKL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            Y +L +RYGEYFTG+MGAE+I+KL+ETFDIDAEA+ LRD IRNGKGQ             
Sbjct: 241  YHQLVERYGEYFTGSMGAEAIKKLLETFDIDAEADSLRDTIRNGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQQSGNSP+GMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQQSGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLN AQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNQAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P VWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PAVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT  EG  G Y 
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTLTEGAVGEYT 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
            PA  D  E GVYSSPAEAIMA DRG L+V+++IKVRLT  RPPAEIE  LF   GW  G 
Sbjct: 601  PATADDVERGVYSSPAEAIMAVDRGALTVQSRIKVRLTDQRPPAEIEAELFPE-GWSFGQ 659

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
             W A+TTLGRVLFNELLP+ Y +VN+QM KK QA IINDLAERYPMIVVAQTVDKLKD G
Sbjct: 660  PWDADTTLGRVLFNELLPVEYPYVNEQMPKKRQAVIINDLAERYPMIVVAQTVDKLKDVG 719

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVSMADVLVPP+K EILD YEERA+ +E++FQRGAL  DER +ALVEIWK+
Sbjct: 720  FYWATRSGVTVSMADVLVPPQKAEILDKYEERADGLERKFQRGALTPDERRDALVEIWKQ 779

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            AT+EVG A+  HYP DNPI  IV SGA GN TQ R+LAGMKGLVTNPKGEFIPRPIKSSF
Sbjct: 780  ATEEVGAAMEAHYPDDNPIPMIVKSGAAGNMTQIRSLAGMKGLVTNPKGEFIPRPIKSSF 839

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTV EYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI   
Sbjct: 840  REGLTVAEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGITTT 899

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            +AERQ DGTLIRD ++ETS YARTL  DA+D  GNV+V RG DLGDP IEA LAAGITQV
Sbjct: 900  IAERQPDGTLIRDAHVETSTYARTLATDALDADGNVIVERGHDLGDPAIEALLAAGITQV 959

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGI+AAQSIGEPGTQLTMRTFHQGGV
Sbjct: 960  KVRSVLTCATGTGVCAHCYGRSMATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHQGGV 1019

Query: 1021 GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL 1080
            G+DITGGLPRVQELFEARVP+G APIA+V+GRVRLED +RFYKITIVPDDG EEVV DK+
Sbjct: 1020 GDDITGGLPRVQELFEARVPKGVAPIAEVSGRVRLEDDDRFYKITIVPDDGSEEVVIDKI 1079

Query: 1081 SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE 1140
            SKRQRLRVFKH+DGSER+LSDGDHVEVGQQLMEGSA+PHEVLRV GPR+VQ+HLV EVQE
Sbjct: 1080 SKRQRLRVFKHDDGSERLLSDGDHVEVGQQLMEGSANPHEVLRVMGPRQVQVHLVNEVQE 1139

Query: 1141 VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP 1200
            VYR+QGVSIHDKHIE IVRQMLRRVTIID G+TEFLPGSL++RAEFEA NR+VVAE GEP
Sbjct: 1140 VYRSQGVSIHDKHIETIVRQMLRRVTIIDHGSTEFLPGSLVERAEFEAANRQVVAEGGEP 1199

Query: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA 1260
            AAGRPVLMGITKASLAT+SWLSAASFQETTRVLTDAAIN RSDKL GLKENVIIGKLIPA
Sbjct: 1200 AAGRPVLMGITKASLATESWLSAASFQETTRVLTDAAINSRSDKLIGLKENVIIGKLIPA 1259

Query: 1261 GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD--FGQATGAAVPLDDYGYS-DYR 1316
            GTGINRYRNI VQPTEEARAAAY +PSY+D YYSPD  FG   GAAVPLDDYG+S DYR
Sbjct: 1260 GTGINRYRNIQVQPTEEARAAAYAVPSYDDTYYSPDGTFGAPAGAAVPLDDYGFSNDYR 1318


>tr|C3JJR1|C3JJR1_RHOER Tax_Id=596309 (rpoC)RecName: Full=DNA-directed
            RNA polymerase; EC=2.7.7.6;[Rhodococcus erythropolis
            SK121]
          Length = 1318

 Score = 2153 bits (5579), Expect = 0.0
 Identities = 1102/1319 (83%), Positives = 1167/1319 (88%), Gaps = 4/1319 (0%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLA+AEDIR WSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLASAEDIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVI  VD E+RHNELSTLEAEM VE+K V DQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVIVGVDEELRHNELSTLEAEMQVEKKTVADQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKV+D GEREMRQLRDRAQRELDRL++IW+TFTKL+ KQLI+DE L
Sbjct: 181  IAELEAEGAKSDVRRKVKDGGEREMRQLRDRAQRELDRLDEIWTTFTKLSVKQLIIDELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTGAMGAESIQ L++ FD+DAEAE LR+ IR+GKGQ             
Sbjct: 241  YRELVDRYGEYFTGAMGAESIQILMQNFDLDAEAESLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ +GNSPMGMVL+AVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQTNGNSPMGMVLNAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVER+R
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERKR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
             QVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  VQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGL++LT   EG  G   
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTRLDEGVTGELV 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
                D  E GVYSSPAEA MA DRG LSV+A+IKVRLTQ RPP ++E+ LF   GW  GD
Sbjct: 601  APTNDEAEQGVYSSPAEAQMAVDRGALSVQAQIKVRLTQQRPPRDLENELF-PEGWNYGD 659

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
             WTA TTLGRVLFNELLP  Y FVN+QM KK QA IINDLAERYPMIVVAQTVDKLKD G
Sbjct: 660  GWTATTTLGRVLFNELLPADYPFVNEQMPKKRQATIINDLAERYPMIVVAQTVDKLKDVG 719

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTVS++DVLVPP K  I++ +E +A+K+EKQ+QRGAL+  ERN ALV IW+E
Sbjct: 720  FYWATRSGVTVSISDVLVPPEKPAIIEDFEAQADKIEKQYQRGALDKKERNSALVTIWQE 779

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            ATD+VG+A+  H+P  NPI  IV SGA GN TQ R+LAGMKGLVTNPKGEFIPRPIKSSF
Sbjct: 780  ATDKVGKAMEAHFPDSNPIPMIVKSGAAGNMTQVRSLAGMKGLVTNPKGEFIPRPIKSSF 839

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            +EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI+  
Sbjct: 840  KEGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREVDCGTERGIVTT 899

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            +AE+Q DGT+IRD ++ETS YARTL ADAVD  G V+V RG DLGDP I+A L AGIT V
Sbjct: 900  IAEKQADGTMIRDAHVETSTYARTLAADAVDANGTVIVERGHDLGDPAIDALLEAGITTV 959

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 960  KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1019

Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079
             G+DITGGLPRVQELFEARVP+GKAPIADVTGRV+LEDG+RFYKITIVPDDGGEEVVYDK
Sbjct: 1020 AGDDITGGLPRVQELFEARVPKGKAPIADVTGRVQLEDGDRFYKITIVPDDGGEEVVYDK 1079

Query: 1080 LSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139
            LSKRQRLRVFKH DG E +L+DGDHVEVGQQLMEG+ADPHEVLRV GPR+VQIHLV EVQ
Sbjct: 1080 LSKRQRLRVFKHADGRESLLADGDHVEVGQQLMEGAADPHEVLRVMGPRQVQIHLVNEVQ 1139

Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGE 1199
            EVYR+QGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSL +RAEFE+ NRRVVAE GE
Sbjct: 1140 EVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLTERAEFESANRRVVAEGGE 1199

Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKL GLKENVIIGKLIP
Sbjct: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIGKLIP 1259

Query: 1260 AGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1316
            AGTGINRYRNI VQPTEEARAAAY +PSY+DQYYSPD FGQ TGAAVPLDDYG+S DYR
Sbjct: 1260 AGTGINRYRNIQVQPTEEARAAAYAVPSYDDQYYSPDGFGQNTGAAVPLDDYGFSNDYR 1318


>sp|A4FPP2|RPOC_SACEN Tax_Id=405948 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit
            beta';[Saccharopolyspora erythraea]
          Length = 1303

 Score = 2006 bits (5198), Expect = 0.0
 Identities = 1021/1319 (77%), Positives = 1126/1319 (85%), Gaps = 19/1319 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAA VTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAASVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVITSV+ EMRHNE+STLEAE+ VERK + DQRDADLEAR       
Sbjct: 121  APKDLEKIIYFAAYVITSVNTEMRHNEMSTLEAEIGVERKQIADQRDADLEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKV++ GEREMRQLRDRAQRELD+L++IW TFTKL P+QLI DE L
Sbjct: 181  LAELEQEGAKSDVRRKVKEGGEREMRQLRDRAQRELDKLDEIWETFTKLEPRQLIADELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DR+GEYFTG MGAESIQ L++ FDI+AEA+ LR+ IR+GKGQ             
Sbjct: 241  YRELYDRFGEYFTGGMGAESIQALLQDFDINAEADQLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ +GN+P GMVL+ VPVIPP+LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQATGNNPSGMVLNCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPK MA+ELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKEMAVELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLY+LT +++G KG  Q
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYHLTRQLDGAKGEGQ 600

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
                       +SS  EAIMA DRG L ++AK+K+R+  L P AE          W+PG 
Sbjct: 601  S----------FSSVGEAIMAFDRGGLDLQAKVKIRVRDLVPNAEQRP-----EDWEPGQ 645

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
             W AETTLGRV FNELLP  Y FVN  + KK QAAI+NDLAERYPM+ VAQT+DKLKD+G
Sbjct: 646  PWLAETTLGRVWFNELLPEDYPFVNDLLPKKRQAAIVNDLAERYPMVTVAQTLDKLKDAG 705

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            F+WATRSGVTVS++DV+VPP K EILD YE +A++VEK+++RGAL++ ERN  LV++W  
Sbjct: 706  FHWATRSGVTVSISDVVVPPNKTEILDGYEAKADQVEKRYRRGALSYQERNAELVKVWTA 765

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            A DEV +A+  ++P DN I  IV SGA GN TQ   LAGM+GLV+NPKGE+IPRPIK++F
Sbjct: 766  AKDEVAEAMEANFPEDNSISMIVKSGAAGNMTQVVQLAGMRGLVSNPKGEYIPRPIKANF 825

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGL+VLEYFI+ HGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI + 
Sbjct: 826  REGLSVLEYFISNHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGIRMP 885

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            +AE+  DG L+RD ++ETS YART   D  D  GNVV+ARG DLGDP IE  LAAG+T+V
Sbjct: 886  IAEKLPDGKLLRDAHVETSVYARTTAEDVTDSDGNVVLARGSDLGDPAIEKLLAAGVTKV 945

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVD+GEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 946  KVRSVLTCESGVGVCAVCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1005

Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079
             G+DIT GLPRVQELFEARVP+GKAPIAD  GR+R+ED +R++KITI+PDDG EE+VYDK
Sbjct: 1006 AGDDITTGLPRVQELFEARVPKGKAPIADAPGRIRMEDNDRYWKITIIPDDGSEEIVYDK 1065

Query: 1080 LSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139
            LSKRQRL      DG+ER ++DGDHV+VGQQL+EG+ DPHEVLRV GPRE Q+HLVREVQ
Sbjct: 1066 LSKRQRLAAIS-VDGTERQITDGDHVDVGQQLLEGAVDPHEVLRVMGPREAQLHLVREVQ 1124

Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGE 1199
            EVYR+QGV IHDKH+EVIVRQMLRRV IIDSGATEFLPGS ++R++FE ENRRVVAE G+
Sbjct: 1125 EVYRSQGVGIHDKHVEVIVRQMLRRVIIIDSGATEFLPGSPVERSQFEGENRRVVAEGGD 1184

Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259
            PA+GRPVLMGITKASLAT+SWLSAASFQETTR+LT+AAI   SDKL GLKENVIIGKLIP
Sbjct: 1185 PASGRPVLMGITKASLATESWLSAASFQETTRILTNAAIEGASDKLVGLKENVIIGKLIP 1244

Query: 1260 AGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1316
            AGTGINRYRNI VQPTEEARAAAY IPSY+D YY+PD FG  TGAAVPLDDY +  DYR
Sbjct: 1245 AGTGINRYRNIQVQPTEEARAAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDYR 1303


>tr|C7MTI8|C7MTI8_SACVD Tax_Id=471857 RecName: Full=DNA-directed RNA
            polymerase; EC=2.7.7.6;[Saccharomonospora viridis]
          Length = 1303

 Score = 1982 bits (5134), Expect = 0.0
 Identities = 1009/1319 (76%), Positives = 1116/1319 (84%), Gaps = 19/1319 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVITSV+ E+R N+L TLE E+ VERK +E++RDA++E R       
Sbjct: 121  APKDLEKIIYFAAYVITSVNTELRQNDLPTLENEINVERKNIENKRDAEIEQRAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKV++SGEREMRQ+RDRAQRELDRLE++W+TFTKL P+QLIVDE L
Sbjct: 181  LAELEAEGAKADVRRKVKESGEREMRQIRDRAQRELDRLEEVWTTFTKLEPRQLIVDEQL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYGEYFTG MGAE+IQKL   FD+DAEAE LR+ IR GKGQ             
Sbjct: 241  YRELYDRYGEYFTGGMGAEAIQKLASEFDVDAEAEALRETIRTGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ +GN P GMVLDA+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQSTGNDPRGMVLDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVI+VGPQLKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVER R
Sbjct: 421  RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVI  HPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PQVWDVLEEVINGHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLS+NNILSPASGRPLAMPRLDMVTGL++LT   E  KGA  
Sbjct: 541  MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLDENAKGA-- 598

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
                       YSSPAEAIMA DRG L++ A +K+R+   +PP + E+A     GW+PG 
Sbjct: 599  --------GAAYSSPAEAIMAYDRGQLALHAPVKIRIHDRQPP-KSEEAALREKGWEPGK 649

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
             W AETTLGRVLFN+LLP  Y FVN+ + KK QAAI+NDLAERY M  VAQT+D LKD+G
Sbjct: 650  PWLAETTLGRVLFNDLLPEDYPFVNEVLPKKRQAAIVNDLAERYSMTQVAQTLDGLKDAG 709

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            F+WATRSGVT+S+ DV+VPP+K+E+L+ YE +A +VEK++QRG L+H ERN  LV++W +
Sbjct: 710  FHWATRSGVTISITDVVVPPQKQELLEQYEAKAAQVEKRYQRGQLSHAERNNELVKVWSQ 769

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            AT++V +A+ E+ P DNPI  IV SGA GN TQ R+LAGM+GLV+NPKGE+IPRPIK++F
Sbjct: 770  ATEDVAKAMEENLPDDNPIAMIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKANF 829

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTV EYFI THGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC T RGI   
Sbjct: 830  REGLTVAEYFIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTSRGITRT 889

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            +A+   DG L+R  ++ETS YAR L ADAVDE GNV++  GEDL DP IE  + AGI++V
Sbjct: 890  IADELPDGRLVRAEHVETSVYARNLAADAVDEQGNVILNAGEDLSDPAIERLIQAGISKV 949

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATGKLVD+GEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 950  KVRSVLTCESAMGVCATCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1009

Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079
             G+DIT GLPRV ELFEARVP+GKAPIADV GRVR+E+ ERF+KIT++PDDG EE+V+DK
Sbjct: 1010 AGDDITTGLPRVTELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGSEEIVFDK 1069

Query: 1080 LSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139
            LSKRQRL +     G    L+DGDHV+VGQ L+EG+ DPHEVLRV GPRE Q+HLV EVQ
Sbjct: 1070 LSKRQRLAI-----GPNGPLADGDHVKVGQPLLEGTPDPHEVLRVMGPREAQMHLVEEVQ 1124

Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGE 1199
            +VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG+TEFLPG L +R++FE  NR+ VAE GE
Sbjct: 1125 KVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGELPERSKFEQVNRKAVAEGGE 1184

Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259
            PA+GRPVLMGITKASL TDSWLSAASFQETTRVLTDAAIN RSD L GLKENVIIGKLIP
Sbjct: 1185 PASGRPVLMGITKASLTTDSWLSAASFQETTRVLTDAAINGRSDALIGLKENVIIGKLIP 1244

Query: 1260 AGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1316
            AGTGINRYRNI VQPTEEAR AAY IPSY+D YY+PD FG  TGAAVPLDDY +  D+R
Sbjct: 1245 AGTGINRYRNIQVQPTEEARVAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDFR 1303


>tr|C6WN59|C6WN59_ACTMD Tax_Id=446462 RecName: Full=DNA-directed RNA
            polymerase; EC=2.7.7.6;[Actinosynnema mirum]
          Length = 1298

 Score = 1953 bits (5060), Expect = 0.0
 Identities = 996/1319 (75%), Positives = 1110/1319 (84%), Gaps = 24/1319 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIRQWS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAYVI  V+ E+RH +  TL++EM VERK VE++RDAD+EAR       
Sbjct: 121  APKDLEKIIYFAAYVIVGVNAELRHTDQPTLDSEMQVERKRVENRRDADVEARAQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKV++ GEREMRQLRDRAQRELDRL++IWSTF KL   QLI DE L
Sbjct: 181  LAELEAEGAKSDVRRKVKEGGEREMRQLRDRAQRELDRLDEIWSTFVKLERAQLIADEQL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL DRYG+YFTGAMGAE+IQKL+  +D+DAEAE+LR+ IR+GKGQ             
Sbjct: 241  YRELYDRYGDYFTGAMGAEAIQKLLGDYDVDAEAEVLRETIRSGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + N+P GMVLD VPVIPP+LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQATRNNPQGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVER R
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P VWDVLEEVI EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPLVCEAFNADFDGDQ
Sbjct: 481  PAVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEAR+LMLSSNNILSPASG+PLAMPRLDMVTGLY+LT   E D G   
Sbjct: 541  MAVHLPLSAEAQAEARVLMLSSNNILSPASGKPLAMPRLDMVTGLYHLTWHKEDDLG--- 597

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
                   E   YSSPAEA MA DR  L ++A  K+R+T   PP   E       GW+PG 
Sbjct: 598  -------EGQAYSSPAEAQMAFDRKALGLQAMCKIRITDKNPPRGQEP-----EGWEPGQ 645

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
             W AETTLGRVLFNE+LP  Y F+N+ M KK QA +INDLAERYPM+ VA+T+DKLKD+G
Sbjct: 646  PWLAETTLGRVLFNEVLPQDYPFLNEVMPKKRQATVINDLAERYPMVTVARTLDKLKDAG 705

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            F+WATRSGVTV+++DVLVP  K+ ILD YE+ A+ VEK++QRG L++ ERN  LV++W +
Sbjct: 706  FHWATRSGVTVAISDVLVPEAKQGILDEYEKLADAVEKRYQRGQLSYTERNNELVKVWTK 765

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            AT++V Q + +++P DN I  IV SGA GN TQ R+LAGM+GLVTNPKGE+IPRPIK+SF
Sbjct: 766  ATEDVAQVMEDNFPEDNSIRKIVKSGAAGNMTQVRSLAGMRGLVTNPKGEYIPRPIKNSF 825

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGL+VLEYFI THGARKGLADTALRTADSGYLTRRLVDVSQDVI+RE DC T RG+ + 
Sbjct: 826  REGLSVLEYFIATHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREIDCGTTRGVGMT 885

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            + E   D   + + + +TS YARTL  D  D+ GN+V+ RG+DLGDP ++  +   + +V
Sbjct: 886  VGEVLSDRVGLHE-FAQTSVYARTLAEDITDKDGNLVLNRGDDLGDPALQTLVTNNVVRV 944

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RSMATG+LVD+GEAVGIVAAQSIGEPGTQLTMRTFHQGGV
Sbjct: 945  KVRSVLTCESAVGVCASCYGRSMATGQLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1004

Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079
             G+DIT GLPRVQELFEARVP+GKAPIADV GRVR+EDG+RF+KIT++PDDG EE++++K
Sbjct: 1005 AGDDITTGLPRVQELFEARVPKGKAPIADVDGRVRIEDGDRFWKITLIPDDGSEEILFEK 1064

Query: 1080 LSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139
            LSKRQRL      + +   L DGDHV VGQQL+EG+ DPHEVLRV GPRE Q+HLV+EVQ
Sbjct: 1065 LSKRQRL-----ANTATGPLQDGDHVSVGQQLLEGTPDPHEVLRVMGPREAQLHLVQEVQ 1119

Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGE 1199
            +VYRAQGV+IHDKHIEVIVRQMLRRVTIIDSGATEFLPGSL++RA+FE+ NR+VVAE GE
Sbjct: 1120 KVYRAQGVAIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLVERADFESGNRQVVAEGGE 1179

Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259
            PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAIN RSDKL GLKENVIIGKLIP
Sbjct: 1180 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINGRSDKLIGLKENVIIGKLIP 1239

Query: 1260 AGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1316
            AGTGINRYRNI VQPTEEARAAAY IPSY+D YY+PD FG  TGAAVPLDDY +  DYR
Sbjct: 1240 AGTGINRYRNIQVQPTEEARAAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDYR 1298


>tr|C8XBL0|C8XBL0_NAKMY Tax_Id=479431 SubName: Full=DNA-directed RNA
            polymerase, beta' subunit;[Nakamurella multipartita]
          Length = 1308

 Score = 1897 bits (4913), Expect = 0.0
 Identities = 970/1320 (73%), Positives = 1092/1320 (82%), Gaps = 16/1320 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIR WS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRAWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
             CGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   ACGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAY+IT+VD   RHN+L T+EAEM VERK +E+ RDAD++AR       
Sbjct: 121  APKDLEKIIYFAAYLITAVDETARHNDLPTIEAEMGVERKNLENARDADIDARAKKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVR+ GERE RQ+RDRAQR +DRL+++   F KL+ +QLIVDE L
Sbjct: 181  LAELEAEGAKSDVRRKVREGGEREQRQIRDRAQRAIDRLDEVLDLFRKLSVRQLIVDEVL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL+DR+G+YFTG MGAE+++++I  FDIDAE EILRD I+NGKGQ             
Sbjct: 241  YRELEDRFGDYFTGGMGAEALKQIISDFDIDAEVEILRDTIKNGKGQRKIRAIKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ + NSP+GMVLD VPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFQMTQNSPLGMVLDCVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            PQVWDVLEEVI+ HPV+LNRAPTLHRLGIQAFEP LVEGKAIQLHPLVC AFNADFDGDQ
Sbjct: 481  PQVWDVLEEVISAHPVMLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVH+PLS+EAQAEAR+LMLSSNNILSP SGRPLAMP LD+VTGLYYL       KGA  
Sbjct: 541  MAVHVPLSSEAQAEARVLMLSSNNILSPGSGRPLAMPSLDLVTGLYYLCGYKPEAKGA-- 598

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
                      V+SSPAE IMA D G++ +RA IKVRL     P++   A  G + ++ G 
Sbjct: 599  --------GSVFSSPAEGIMALDAGLIDLRAPIKVRLPGSVKPSKDTLAALGED-YEAGQ 649

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
             W AETTLGRVLFNELLP GY FVN+++ KK QA I+NDLAE YPM VVAQ +D+LK++G
Sbjct: 650  PWLAETTLGRVLFNELLPDGYPFVNEELPKKRQAVIVNDLAEHYPMSVVAQVLDRLKEAG 709

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            F+WATRSG+TV++ DV++PP K+EIL  +E  AE+VEK +QRG L+H+ERN+ LV+IW+ 
Sbjct: 710  FHWATRSGMTVAIGDVIIPPEKEEILLRHEIEAERVEKAYQRGNLSHEERNDDLVKIWEA 769

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            AT E+ +AL   YPADNP+ T+V++GA GN+ Q R+LAGMKG+V N KG+ IPRPI+SSF
Sbjct: 770  ATREIEEALPPAYPADNPVSTLVNAGAAGNWIQVRSLAGMKGVVANSKGQQIPRPIRSSF 829

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGL+VLEYFINTH ARKGLADTALRTA+SGYLTRRLVDVSQDVIVRE DC TERG+ + 
Sbjct: 830  REGLSVLEYFINTHSARKGLADTALRTAESGYLTRRLVDVSQDVIVRETDCGTERGVTLP 889

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            +A+R  DG+L  + +IETS   R L  D V E G VVV  G D+ +  +   + AGIT  
Sbjct: 890  MADRYADGSLHINEFIETSVQGRVLAGDLVAEDGTVVVPAGTDMREHHVRDAVNAGITLA 949

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            KVRSVL              RS+ATG LVD+GEAVGIVAAQSIGEPGTQLTMRTFH G  
Sbjct: 950  KVRSVLTCEAAIGTCAVCYGRSLATGNLVDVGEAVGIVAAQSIGEPGTQLTMRTFHTGAA 1009

Query: 1021 --GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078
                DIT GLPRVQELFEARVP+GKAPIAD  GR+R+ED ++F+KI + PDDG EE+VY+
Sbjct: 1010 SGSSDITQGLPRVQELFEARVPKGKAPIADAAGRIRIEDADKFFKIIVTPDDGSEEIVYE 1069

Query: 1079 KLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138
            KL K QRL      DGSER+L DGDHV VGQQL+EG+ DPHEVLRV G REVQ+HLVREV
Sbjct: 1070 KLPKTQRLATMT-VDGSERLLVDGDHVSVGQQLLEGNPDPHEVLRVMGQREVQLHLVREV 1128

Query: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESG 1198
            Q VYR+QGV IHDKHIEVI+RQMLRRVTIIDSG+TEFLPG++I+R EFEA NRRV+AE G
Sbjct: 1129 QNVYRSQGVGIHDKHIEVIIRQMLRRVTIIDSGSTEFLPGAVIERKEFEASNRRVLAEGG 1188

Query: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258
            EPAAGRP LMGITKASLAT+SWLSAASFQETTRVLTDAAIN +SDKL GLKENVIIGKLI
Sbjct: 1189 EPAAGRPALMGITKASLATESWLSAASFQETTRVLTDAAINAKSDKLVGLKENVIIGKLI 1248

Query: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGQATGAAVPLDDYGYS-DYR 1316
            PAGTGI RYR+I VQPTEEARAAAYT+PS++D YY  D FG ATGAAVPLDD+    DYR
Sbjct: 1249 PAGTGIARYRDIQVQPTEEARAAAYTLPSFDDTYYGADTFGVATGAAVPLDDFDLGRDYR 1308


>sp|Q4JT33|RPOC_CORJK Tax_Id=306537 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit
            beta';[Corynebacterium jeikeium]
          Length = 1323

 Score = 1870 bits (4844), Expect = 0.0
 Identities = 954/1321 (72%), Positives = 1095/1321 (82%), Gaps = 14/1321 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRRWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
             CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   GCGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAA +ITSVD E RHN+ STLEAEM++E+K VE +RDA+L  R       
Sbjct: 121  APKDLEKIIYFAANIITSVDEEGRHNDQSTLEAEMLLEKKEVEQERDAELADRAKTLEDD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         ++KV+++ +REMR +R+RA+RE+DRL++IW+TF KLAPKQ+IVDEN+
Sbjct: 181  LAELEAAGAKNDAKKKVQNAADREMRHIRERAEREIDRLDEIWNTFVKLAPKQMIVDENI 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            Y EL DRY +YFTG MGAE+IQ LI +FD++AEAE LR+VIR+GKGQ             
Sbjct: 241  YNELVDRYEDYFTGGMGAEAIQTLIRSFDLEAEAESLREVIRDGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             F +SGN P GMVLD +PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR++DL
Sbjct: 301  AFLRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMLDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVI+VGPQLKLHQCGLPKLMALELFKPFVMKRLV+ ++AQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKRLVEKSYAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P+VWDVLEE IAEHPV+LNRAPTLHRLGIQAFEP+LVEGKAIQLHPL CEAFNADFDGDQ
Sbjct: 481  PEVWDVLEEAIAEHPVMLNRAPTLHRLGIQAFEPILVEGKAIQLHPLACEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLT----TEVEGDK 596
            MAVHLPLSAEAQAEARILML+SNNILSPASG+PLAMPRLDMVTGLYYLT     E  G +
Sbjct: 541  MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTLLKKPEEFGGQ 600

Query: 597  GAYQPAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGW 656
            GAY PA +D P  GVYSS AEAIMA DRGVL ++A I VR++ LRP AEIE  LF  +GW
Sbjct: 601  GAYAPATEDGPAQGVYSSLAEAIMAYDRGVLGLQAPIHVRISHLRPTAEIEAELF-PDGW 659

Query: 657  QPGDAWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKL 716
            Q G  W AETTLGRVLFNELLP  Y +V   M KK QA++INDLA +YPMI VAQTVDKL
Sbjct: 660  QRGQTWLAETTLGRVLFNELLPWNYPYVEGVMAKKPQASVINDLAAKYPMITVAQTVDKL 719

Query: 717  KDSGFYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVE 776
            KD+GFYWATRSGVT++M DVLV P K+E+LD+YE +A  +EK+  RG +N  ER ++LV+
Sbjct: 720  KDAGFYWATRSGVTITMHDVLVLPNKQEVLDNYEAKARVIEKKMARGKINEAERYQSLVD 779

Query: 777  IWKEATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPI 836
            +WKEATD VGQ++ + YP DNPI  IV SGA GN  Q  TLAGMKG+VTN +GE+I RPI
Sbjct: 780  LWKEATDYVGQSVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVTNSRGEYITRPI 839

Query: 837  KSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERG 896
            K+SFREGL+VLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVRE DC T++G
Sbjct: 840  KTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTKQG 899

Query: 897  IMVEL------AERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIE 950
             +V +      AE +  G      ++ETS   R L +DA    G V+VA G+ +G+ E++
Sbjct: 900  AVVPVAVPVLDAEGKPTGNYTAADFVETSVLGRYLASDATASDGTVIVAEGDVVGEGELQ 959

Query: 951  ACLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQL 1010
            A L AG+ +VKVRSV+              RSMATGK V+IGEAVGIVAAQSIGEPGTQL
Sbjct: 960  ALLEAGVEEVKVRSVMTCATNTGVCSTCYGRSMATGKKVEIGEAVGIVAAQSIGEPGTQL 1019

Query: 1011 TMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDD 1070
            TMRTFH GGVG DITGGLPRVQELFEARVP+ K+PIA V G+VR+ED + F+ +TI PDD
Sbjct: 1020 TMRTFHLGGVGGDITGGLPRVQELFEARVPKAKSPIASVDGKVRIEDDDNFFTLTIEPDD 1079

Query: 1071 GGEEVVYDKLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREV 1130
            G ++VVY+KLSKRQ L       G ER + DGDHV++GQQL++G+ADPHEVLRV G R V
Sbjct: 1080 GSDDVVYEKLSKRQGLATL-GTGGVERPIRDGDHVKMGQQLLKGAADPHEVLRVMGRRGV 1138

Query: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAEN 1190
            Q HL+ EVQ+VYR QGV+IHDKHIE+IVRQMLRRVT+IDSG+TEFLPGSL+D A+  A +
Sbjct: 1139 QQHLINEVQKVYRDQGVAIHDKHIEIIVRQMLRRVTVIDSGSTEFLPGSLVDHADAVAAS 1198

Query: 1191 RRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKE 1250
            +  V   G P   R  +MGITKASLAT+SWLSAASFQETTRVLTDAAIN RSDKL GLKE
Sbjct: 1199 KEAVKTGGRPVEVRAEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKE 1258

Query: 1251 NVIIGKLIPAGTGINRYRNIAVQPTEEARAAAYTIP-SYEDQYYSPD-FGQATGAAVPLD 1308
            NVIIGKLIPAGTGI+RYRNI+V+PTEEARAAAY++P S+ D +Y+ D +G+ TGAAVPLD
Sbjct: 1259 NVIIGKLIPAGTGISRYRNISVEPTEEARAAAYSLPSSFGDGFYADDTYGEFTGAAVPLD 1318

Query: 1309 D 1309
            D
Sbjct: 1319 D 1319


>tr|C8RUP2|C8RUP2_CORJE Tax_Id=525262 (rpoC)SubName: Full=DNA-directed
            RNA polymerase, beta-prime subunit;
            EC=2.7.7.6;[Corynebacterium jeikeium ATCC 43734]
          Length = 1323

 Score = 1862 bits (4823), Expect = 0.0
 Identities = 950/1321 (71%), Positives = 1094/1321 (82%), Gaps = 14/1321 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRRWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
             CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   GCGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAA +ITSVD E RHN+ STLEAEM++E+K VE +RDA+L  R       
Sbjct: 121  APKDLEKIIYFAANIITSVDEEGRHNDQSTLEAEMLLEKKEVEQERDAELADRAKTLEDD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         ++KV+++ +REMR +R+RA+RE+DRL++IW+TF KLAPKQ+IVDEN+
Sbjct: 181  LAELEAAGAKNDAKKKVQNAADREMRHIRERAEREIDRLDEIWNTFVKLAPKQMIVDENI 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            Y EL DRY +YFTG MGAE+IQ LI +FD++AEAE LR++IR+GKGQ             
Sbjct: 241  YNELVDRYEDYFTGGMGAEAIQTLIRSFDLEAEAESLREIIRDGKGQKKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             F +SGN P GMVLD +PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR++DL
Sbjct: 301  AFLRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMLDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVI+VGPQLKLHQCGLPKLMALELFKPFVMKRLV+ ++AQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKRLVEKSYAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P+VWDVLEE IAEHPV+LNRAPTLHRLGIQAFEP+LVEGKAIQLHPL CEAFNADFDGDQ
Sbjct: 481  PEVWDVLEEAIAEHPVMLNRAPTLHRLGIQAFEPILVEGKAIQLHPLACEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLT----TEVEGDK 596
            MAVHLPLSAEAQAEARILML+SNNILSPASG+PLAMPRLDMVTGLYYLT     E  G +
Sbjct: 541  MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTLLKKPEEFGGQ 600

Query: 597  GAYQPAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGW 656
            GA+ PA ++ P  GVYSS AEAIMA DRGVL ++A I VR++ LRP AEIE  LF  +GW
Sbjct: 601  GAFAPATEEGPAQGVYSSLAEAIMAYDRGVLGLQAPIHVRISHLRPTAEIEAELF-PDGW 659

Query: 657  QPGDAWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKL 716
            Q G  W AETTLGRVLFNELLP  Y +V   M KK QAA+INDLA +YPMI VAQTVDKL
Sbjct: 660  QRGQTWLAETTLGRVLFNELLPWNYPYVEGVMAKKPQAAVINDLAAKYPMITVAQTVDKL 719

Query: 717  KDSGFYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVE 776
            KD+GFYWATRSGVT++M DVLV P K+E+LD+YE +A  +EK+  RG +N  ER ++LV+
Sbjct: 720  KDAGFYWATRSGVTITMHDVLVLPNKQEVLDNYEAKARVIEKKMARGKINEAERYQSLVD 779

Query: 777  IWKEATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPI 836
            +WKEATD VGQ++ + YP DNPI  IV SGA GN  Q  TLAGMKG+VTN +GE+I RPI
Sbjct: 780  LWKEATDFVGQSVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVTNSRGEYITRPI 839

Query: 837  KSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERG 896
            K+SFREGL+VLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVRE DC T++G
Sbjct: 840  KTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTKQG 899

Query: 897  IMVEL------AERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIE 950
             ++ +      AE +  G      ++ETS   R L +DA    G VVVA G  +G+ E++
Sbjct: 900  AVMPVAVPVLDAEGKPTGNYTPADFVETSVLGRYLASDATASDGTVVVAEGNVIGEGELK 959

Query: 951  ACLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQL 1010
            A + AG+ +VKVRSV+              RSMATGK V+IGEAVGIVAAQSIGEPGTQL
Sbjct: 960  ALIEAGVEEVKVRSVMTCATNTGVCSTCYGRSMATGKKVEIGEAVGIVAAQSIGEPGTQL 1019

Query: 1011 TMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDD 1070
            TMRTFH GGVG DITGGLPRVQELFEARVP+ K+PIA V G+VR+ED + F+ +TI PDD
Sbjct: 1020 TMRTFHLGGVGGDITGGLPRVQELFEARVPKAKSPIASVDGKVRIEDDDNFFTLTIEPDD 1079

Query: 1071 GGEEVVYDKLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREV 1130
            G ++VVY+KLSKRQ L       G ER + +GDHV++GQQL++G+ADPHEVLRV G R V
Sbjct: 1080 GSDDVVYEKLSKRQGLATL-GTGGVERPIRNGDHVKMGQQLLKGAADPHEVLRVLGRRGV 1138

Query: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAEN 1190
            Q HL+ EVQ+VYR QGV+IHDKHIE+IVRQMLRRVT+IDSG+TEFLPGSL+D A+  A +
Sbjct: 1139 QQHLINEVQKVYRDQGVAIHDKHIEIIVRQMLRRVTVIDSGSTEFLPGSLVDHADAVAAS 1198

Query: 1191 RRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKE 1250
            +  V   G P   R  +MGITKASLAT+SWLSAASFQETTRVLTDAAIN RSDKL GLKE
Sbjct: 1199 KEAVKAGGRPVEVRAEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKE 1258

Query: 1251 NVIIGKLIPAGTGINRYRNIAVQPTEEARAAAYTIP-SYEDQYYSPD-FGQATGAAVPLD 1308
            NVIIGKLIPAGTGI+RYRNI+V+PTEEARAAAY++P S+ D +Y+ D +G+ TGAAVPLD
Sbjct: 1259 NVIIGKLIPAGTGISRYRNISVEPTEEARAAAYSLPSSFGDGFYADDTYGEFTGAAVPLD 1318

Query: 1309 D 1309
            D
Sbjct: 1319 D 1319


>sp|B1VES2|RPOC_CORU7 Tax_Id=504474 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit
            beta';[Corynebacterium urealyticum]
          Length = 1323

 Score = 1843 bits (4774), Expect = 0.0
 Identities = 935/1323 (70%), Positives = 1083/1323 (81%), Gaps = 14/1323 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRRWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
             CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   SCGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAA +ITSVD + RH++ +TLEAEM++E+K VE  RDADL  R       
Sbjct: 121  APKDLEKIIYFAANIITSVDEDARHSDQTTLEAEMLLEKKEVEQDRDADLADRAKTLEED 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         ++KV+++ +REMR +R+RA+RE++RL++IW+TF KLAPKQ+I DE L
Sbjct: 181  LAELEAAGAKADAKKKVQNAADREMRHIRERAEREVERLDEIWNTFVKLAPKQMIADETL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            Y EL DRY +YFTG MGAE+IQ LI  FD++AEAE LR+VIR+GKGQ             
Sbjct: 241  YEELLDRYEDYFTGGMGAEAIQTLIRNFDLEAEAESLREVIRDGKGQRKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             F +SGN P GMVLD +PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR++DL
Sbjct: 301  AFLRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMLDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVI+VGPQLKLHQCGLPKLMALELFKPFVMKRLV+ ++AQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKRLVEKSYAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P+VWDVLEE IAEHPV+LNRAPTLHRLGIQAFEP+L+EGKAIQLHPL CEAFNADFDGDQ
Sbjct: 481  PEVWDVLEEAIAEHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLACEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLT----TEVEGDK 596
            MAVHLPLS EAQAEARILML+SNNILSPASG+PLAMPRLDMVTGLYYLT     E  G +
Sbjct: 541  MAVHLPLSDEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTLIKGKEEFGGQ 600

Query: 597  GAYQPAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGW 656
            GA+  A +  P TGVY+S AEAIMA DRGVL ++A I VR+  LRPPAE+E   F  +GW
Sbjct: 601  GAFTEATEQGPATGVYTSLAEAIMAYDRGVLGLQAPIHVRIDHLRPPAEVEAEQF-PDGW 659

Query: 657  QPGDAWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKL 716
            Q G  WTAETTLGRV FNELLP  Y +V   M KK QA +INDLA +YPMI VAQTVDKL
Sbjct: 660  QKGQTWTAETTLGRVQFNELLPWNYPYVEGVMDKKNQAVVINDLAAKYPMITVAQTVDKL 719

Query: 717  KDSGFYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVE 776
            KD+GFYWATRSGVT++M DVLV P K+EILD YE +A+++EK+  RG +N  ER ++LV+
Sbjct: 720  KDAGFYWATRSGVTITMHDVLVLPNKQEILDEYEAKAQRIEKKLARGKINESERYQSLVD 779

Query: 777  IWKEATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPI 836
            +WKEATD VG+++ + YP DNPI  IV SGA GN  Q  TLAGMKG+VTN +G++I RP+
Sbjct: 780  LWKEATDFVGESVEKLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVTNSRGDYITRPV 839

Query: 837  KSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERG 896
            K+SFREGL+VLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVRE DC T++G
Sbjct: 840  KTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTKQG 899

Query: 897  IMVEL------AERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIE 950
            +++++      A  +  G   R  ++ETS   R L ADA+   G VV   G  +G+ E+ 
Sbjct: 900  VVLDVCTPVLDANGEKTGEFARADFVETSVLGRFLAADAIGANGEVVCEAGTVIGELELA 959

Query: 951  ACLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQL 1010
              + AG+  +K RSV+              +SMATGK V+IGEAVGIVAAQSIGEPGTQL
Sbjct: 960  ELVKAGVETIKARSVMTCGTATGVCSTCYGKSMATGKKVEIGEAVGIVAAQSIGEPGTQL 1019

Query: 1011 TMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDD 1070
            TMRTFH GGVG DITGGLPRVQELFEARVP+ K+PIA V G++++ED + F+ +TI+PDD
Sbjct: 1020 TMRTFHLGGVGGDITGGLPRVQELFEARVPKAKSPIASVDGKIKIEDDDAFFTLTIIPDD 1079

Query: 1071 GGEEVVYDKLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREV 1130
            G EEVVY+KLSKRQ L       G ER L DGDHV++GQQL++G+ADPHEVLRV G R V
Sbjct: 1080 GSEEVVYEKLSKRQGLATL-GTGGVERPLRDGDHVKMGQQLLKGAADPHEVLRVMGRRGV 1138

Query: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAEN 1190
            Q HL+ EVQ+VYR QGV+IHDKHIE+IVRQMLRRVT+IDSG+TE+LPGSL+D ++  A +
Sbjct: 1139 QQHLINEVQKVYRDQGVAIHDKHIEIIVRQMLRRVTVIDSGSTEYLPGSLVDHSDAVAAS 1198

Query: 1191 RRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKE 1250
            +  V   G P   R  +MGITKASLAT+SWLSAASFQETTRVLTDAAIN RSDKL GLKE
Sbjct: 1199 KEAVKTGGRPVEVRAEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKE 1258

Query: 1251 NVIIGKLIPAGTGINRYRNIAVQPTEEARAAAYTIPS-YEDQYYSPD-FGQATGAAVPLD 1308
            NVIIGKLIPAGTGI RYRNI VQPTEEARAAA+T+PS + D +Y  + +G+ TGA+VPLD
Sbjct: 1259 NVIIGKLIPAGTGIARYRNIQVQPTEEARAAAFTLPSTFGDGFYGDEGYGEFTGASVPLD 1318

Query: 1309 DYG 1311
            D G
Sbjct: 1319 DLG 1321


>tr|C0U8K2|C0U8K2_9ACTO Tax_Id=526225 RecName: Full=DNA-directed RNA
            polymerase; EC=2.7.7.6;[Geodermatophilus obscurus DSM
            43160]
          Length = 1301

 Score = 1830 bits (4741), Expect = 0.0
 Identities = 938/1317 (71%), Positives = 1060/1317 (80%), Gaps = 23/1317 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLA+ +DIRQWS+GEVKKPETINYRTL+PEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLASGDDIRQWSHGEVKKPETINYRTLRPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIW+FKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAAY+ITSVD+E RH +L T+EAE+  E+  +E +RDAD+EAR       
Sbjct: 121  APKDLEKIIYFAAYLITSVDDETRHRDLPTIEAEISAEKHNLESRRDADVEARQQKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVR+ GEREMRQLRDRAQRE+DRLE++  TF KL  KQLI DE L
Sbjct: 181  LAELEAEGAKSDVRRKVREGGEREMRQLRDRAQREIDRLEEVLDTFRKLEVKQLIADEGL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL+DR+GEYF G MGA ++QKL+  FD+DAEA  LR+ IR+GKGQ             
Sbjct: 241  YRELRDRFGEYFEGGMGAAALQKLLADFDLDAEAASLRETIRSGKGQRKLRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             F Q+ NSPMGMVLD VPVIPP+LRPMVQLDGGRFATSD+NDLYRRVINRNNRLKRL+DL
Sbjct: 301  AFLQTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDMNDLYRRVINRNNRLKRLLDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVER R
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P VWDVLEEVI EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQ+HPLVC AFNADFDGDQ
Sbjct: 481  PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPA GRP+  P  DMV GLY+LTT V     A  
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPADGRPITAPTQDMVLGLYHLTTLVPSRHEA-- 598

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQL--RPPAEIEDALFGHNGWQP 658
                D  +   Y S AEAIMA D+G L ++ +  +RL ++      ++ +       W P
Sbjct: 599  ----DGGQPAAYGSTAEAIMAFDKGALGLQERALIRLDEVFGVDNGKVNEPWEQPEDWAP 654

Query: 659  GDAWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKD 718
            G      T+LGRVLFNE LP  Y FVN Q+ KK   AI+NDLAERYP + VA T+D LK 
Sbjct: 655  GQPALVRTSLGRVLFNEALPEDYRFVNYQVPKKELGAIVNDLAERYPKVQVAATLDALKS 714

Query: 719  SGFYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIW 778
            +GF WATRSGVT+++ DV+ PP K+EILD +E  A ++E+Q++RG +   ER   L+EIW
Sbjct: 715  AGFRWATRSGVTIAIDDVVTPPAKQEILDRHEAEARQIERQYERGVITDAERRGELIEIW 774

Query: 779  KEATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKS 838
              A  EV QA+ +++P  NP+  +V+SGA GN  Q   +AGM+GLV NPKGE IPRPIK+
Sbjct: 775  TRARAEVSQAMVDNFPTTNPVWVMVNSGARGNMMQISQIAGMRGLVANPKGEIIPRPIKA 834

Query: 839  SFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIM 898
            +FREGL+VLEYFI+THGARKGLADTALRTADSGYLTRRLVDVSQDVI+RE DC TERG++
Sbjct: 835  NFREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGVI 894

Query: 899  VELAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGIT 958
            + +A    DG L RDP+ ETS YAR L  D V E G ++     DLGD  I+A + AG++
Sbjct: 895  MPIA-TSVDGVLTRDPHAETSVYARALATDVVAEDGTLIAQANSDLGDVLIQALVDAGVS 953

Query: 959  QVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQG 1018
            +VKVR VL              RS+ATGKLVD+GEAVGI+AAQSIGEPGTQLTMRTFH G
Sbjct: 954  EVKVRCVLTCESLLGTCATCYGRSLATGKLVDVGEAVGIIAAQSIGEPGTQLTMRTFHTG 1013

Query: 1019 GV-GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVY 1077
            GV GEDIT GLPRV ELFEARVP+GKAPIA++ G VR+EDGE+F K+TI PDDG +EVVY
Sbjct: 1014 GVAGEDITHGLPRVVELFEARVPKGKAPIAELAGTVRIEDGEQFRKLTITPDDGSDEVVY 1073

Query: 1078 DKLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVRE 1137
            DKLS+R RLRV            DG HVEVG+QL EG+ DPHEVLR+ GPREVQ+HLVRE
Sbjct: 1074 DKLSRRSRLRV-----------EDGAHVEVGEQLTEGAVDPHEVLRIMGPREVQLHLVRE 1122

Query: 1138 VQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAES 1197
            VQEVYR+QGVSIHDKHIEVI+RQML+RVTIIDSGATEFLPG+L++R  FE ENRRVVAE 
Sbjct: 1123 VQEVYRSQGVSIHDKHIEVIIRQMLKRVTIIDSGATEFLPGALVERTLFETENRRVVAEG 1182

Query: 1198 GEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKL 1257
             EPA+ RPVLMGITKASLAT+SWLSAASFQETT+VLTDAAI  +SD L GLKENVIIGKL
Sbjct: 1183 NEPASARPVLMGITKASLATESWLSAASFQETTKVLTDAAIQGKSDSLLGLKENVIIGKL 1242

Query: 1258 IPAGTGINRYRNIAVQPTEEARAAAYTIPSYED-QYYSPD-FGQATGAAVPLDDYGY 1312
            IPAGTGI+RYRNI V+PTEEARAA YT+  Y+D QYYSPD FGQ +G AV L +Y +
Sbjct: 1243 IPAGTGISRYRNITVEPTEEARAAVYTMAGYDDGQYYSPDVFGQGSGEAVRLKEYDW 1299


>sp|C4LL70|RPOC_CORK4 Tax_Id=645127 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit
            beta';[Corynebacterium kroppenstedtii]
          Length = 1332

 Score = 1824 bits (4724), Expect = 0.0
 Identities = 930/1325 (70%), Positives = 1074/1325 (81%), Gaps = 14/1325 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVN FDELRIGLATA+DIR+WS+GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC
Sbjct: 1    MLDVNLFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
             CGKYKRVR+KGI+CERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   ACGKYKRVRYKGIVCERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFAA +ITSVD E RH +  TLEA++ +E+K VE  RD +L  R       
Sbjct: 121  APKDLEKIIYFAANIITSVDEEARHTDQETLEADIFMEKKEVEADRDEELAERQQKLEED 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         +RKV+++ EREMR +R+RA+RE+DRL++IW+TF KLAPKQ+IVDE +
Sbjct: 181  LKELESNGAKADAKRKVQNAAEREMRHIRERAEREIDRLDEIWNTFIKLAPKQMIVDETI 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            Y EL DRY +YFTG MGAE+IQ LI+ FD++AEAE L +VIR+GKGQ             
Sbjct: 241  YSELVDRYEDYFTGGMGAEAIQTLIKNFDLEAEAEKLSEVIRDGKGQKQVRALKRLRVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             F +SGN P  MVLDA+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+IDL
Sbjct: 301  AFLRSGNDPAAMVLDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVI+VGPQLKLHQCGLPKLMALELFKPFVMKRLV+ ++AQNI+SAKRMVERQR
Sbjct: 421  RVDYSGRSVIIVGPQLKLHQCGLPKLMALELFKPFVMKRLVEKSYAQNIRSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P+VWDVLEE IAEHPV+LNRAPTLHRLGIQAFEP+LVEGKAIQLHPL CEAFNADFDGDQ
Sbjct: 481  PEVWDVLEEAIAEHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVE----GDK 596
            MAVHLPLSAEAQAEAR+LML+SNNILSPASG+PLAMPRLDMVTGLY+LT E      G +
Sbjct: 541  MAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYFLTLEKSEDQLGGE 600

Query: 597  GAYQPAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGW 656
            GAY  A ++ P+ G YSS AEA+MA DRGVL ++A I+VR++ LRPP +IE  LF  +GW
Sbjct: 601  GAYHEADENGPKRGTYSSFAEALMARDRGVLGLQAPIEVRISHLRPPEDIEAELF-PDGW 659

Query: 657  QPGDAWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKL 716
            Q G  WTA TTLGR++FNELLP  Y FVN  M KK QA IINDLA RYPMI VAQTVDK+
Sbjct: 660  QRGQKWTAHTTLGRIMFNELLPWNYPFVNGVMAKKAQAVIINDLAARYPMITVAQTVDKM 719

Query: 717  KDSGFYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVE 776
            KD+GFYWATRS VT+SM DVLV P K+EIL  YE++A  +EK+  RG +N++ER  +LV+
Sbjct: 720  KDAGFYWATRSCVTISMDDVLVLPNKEEILQRYEKQAATIEKKLARGKINNEERYRSLVD 779

Query: 777  IWKEATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPI 836
            +WKE TD VG+++ + YP DNPI  IV SGA GN  Q  TLAGMKG+VTN +G++I RPI
Sbjct: 780  LWKECTDFVGESVEKIYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVTNSRGDYITRPI 839

Query: 837  KSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERG 896
            K+SFREGL+VLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVRE DC T +G
Sbjct: 840  KTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTRKG 899

Query: 897  IMVEL------AERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIE 950
            + V++      AE    G   R  ++ET+   R L  DAV++ G+V+  RG  +GD E +
Sbjct: 900  LEVDVAKPVLDAEGNETGEFTRAEFLETALIGRYLAKDAVNDNGDVIYERGAFVGDAEAK 959

Query: 951  ACLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQL 1010
              +A G+    VR+V+              RSMATG+ VDIGEAVGIVAAQSIGEPGTQL
Sbjct: 960  KMVAEGVRTATVRTVMMCETATGVCATCYGRSMATGQKVDIGEAVGIVAAQSIGEPGTQL 1019

Query: 1011 TMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDD 1070
            TMRTFHQGGVG DITGGLPRVQELFEARVP+ +APIA   G ++LED   FY +TI PD+
Sbjct: 1020 TMRTFHQGGVGGDITGGLPRVQELFEARVPKNQAPIASTEGTIKLEDDGNFYTLTITPDN 1079

Query: 1071 GGEEVVYDKLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREV 1130
            G +EVVY+KLSKRQ L V +   G E  L  GDHV  GQ L+ G+ DPHEVLRV+G   V
Sbjct: 1080 GEDEVVYEKLSKRQGLAVTQEPGGFEHQLRTGDHVVTGQPLLRGAPDPHEVLRVEGVTGV 1139

Query: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAEN 1190
            Q HL+ +VQ+VYR QGV+IHDKHIE+IVRQMLRR+T++DSG+TE LPGSLIDR E  A N
Sbjct: 1140 QKHLIEQVQKVYRDQGVAIHDKHIEIIVRQMLRRLTVVDSGSTELLPGSLIDRNEARAIN 1199

Query: 1191 RRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKE 1250
            + V    GE AA R  +MGITKASLAT+SWLSAASFQETTRVLTDAAIN RSDKL GLKE
Sbjct: 1200 KAVATNGGEGAAFRQEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKE 1259

Query: 1251 NVIIGKLIPAGTGINRYRNIAVQPTEEARAAAYTI-PSYEDQYYSPD--FGQATGAAVPL 1307
            NVIIGKLIPAGTGI+RYRNI+V+PTEEARA A+++  SY D +Y  D  +G+ TGAAV L
Sbjct: 1260 NVIIGKLIPAGTGISRYRNISVEPTEEARAQAFSMNTSYGDGFYGEDGAYGEFTGAAVRL 1319

Query: 1308 DDYGY 1312
            DD G+
Sbjct: 1320 DDQGF 1324


>sp|Q0RRS9|RPOC_FRAAA Tax_Id=326424 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Frankia alni]
          Length = 1296

 Score = 1819 bits (4711), Expect = 0.0
 Identities = 926/1318 (70%), Positives = 1066/1318 (80%), Gaps = 35/1318 (2%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIRQWS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEK+IYFAAY+IT VD E RH +L TLEA M VE++ +ED+++AD+E R       
Sbjct: 121  APKDLEKVIYFAAYMITKVDAEARHRDLPTLEARMGVEKQQLEDKKNADVETRQKRLETD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVR+S EREMRQ+RDRAQR++D L+ ++  F  +  + L  DE L
Sbjct: 181  LAQLEAEGAKGDARRKVRESAEREMRQIRDRAQRKIDDLDRVFDRFKNMKVQDLEPDELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL+DR+G+YF G MGAE++Q+ +  FD+ AEAE LR+ IR+GKGQ             
Sbjct: 241  YRELRDRFGQYFDGGMGAEALQRRLADFDLAAEAESLRETIRSGKGQKKARALKRLKVVS 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             F  + NSPMGMVLD VPVIPP+LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRL+DL
Sbjct: 301  AFLNTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSD+LKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVER R
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P VWDVLEEVI EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQ+HPLVC AFNADFDGDQ
Sbjct: 481  PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMP LDMVTG+++L+T  EG  G   
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPSLDMVTGVFHLSTLAEGAVG--- 597

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAE-IEDALFGHNGWQPG 659
                   E   +SS AEA MA D   ++++A+I VRL    PP++ +  A      W  G
Sbjct: 598  -------EGRAFSSVAEAQMAFDAREIALQARISVRLRDTTPPSDWVPPA-----DWVTG 645

Query: 660  DAWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDS 719
            D +T ETT GR L NE LP GY F+N Q++KK QAAI+NDLAERYP I VA T+D LK +
Sbjct: 646  DVFTLETTFGRCLLNEALPEGYPFINAQLNKKAQAAIVNDLAERYPKIQVAATLDALKSA 705

Query: 720  GFYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWK 779
            GFYWATRSGVTV++ DV+ PP K EILD YE+RA++V+KQF RG L+ +ER   LV+IW 
Sbjct: 706  GFYWATRSGVTVAIEDVVAPPNKAEILDDYEQRADRVQKQFDRGFLSDEERRSELVQIWT 765

Query: 780  EATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSS 839
            EAT+++ +A+ +++P  NP+  +V+SGA GN  Q R LAGM+GLV+NPKGE IPRPIK++
Sbjct: 766  EATNKIAEAMEKNFPQTNPVYVLVNSGAAGNMMQIRQLAGMRGLVSNPKGEIIPRPIKAN 825

Query: 840  FREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMV 899
            FREGLTVLEYFI+THGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI+ 
Sbjct: 826  FREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREEDCGTERGILT 885

Query: 900  ELAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQ 959
             +A R  DG L+RD Y ETSAYARTL +DAVDE G ++V  G D GD  I   + AGI  
Sbjct: 886  RIARRGADGVLVRDRYAETSAYARTLASDAVDEHGEIIVPAGTDAGDVAIGQIIEAGIES 945

Query: 960  VKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGG 1019
            V+VRS L              RS+ATGKLVD+GEAVGIVAAQSIGEPGTQLTMRTFH GG
Sbjct: 946  VRVRSALTCESRMGVCAQCYGRSLATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHSGG 1005

Query: 1020 V-GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078
            V G+DIT GLPRV ELFEAR P+GKAPI +V+GRV++E+ E+ +K+ +VPDDG EE+ Y 
Sbjct: 1006 VAGDDITQGLPRVVELFEARSPKGKAPITEVSGRVKIEETEKTFKVVVVPDDGSEEIAY- 1064

Query: 1079 KLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138
             +S+R RLRV            +GD +EVG Q+++G+ DPHEVLR+ GPR+VQ+HLV +V
Sbjct: 1065 PVSRRSRLRV-----------REGDRIEVGNQIVDGAVDPHEVLRILGPRQVQLHLVDQV 1113

Query: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESG 1198
            QEVYR+QGVSIHDKHIE+I+RQML+RV +++SG T  LPG L +RA FE+ENRRVV   G
Sbjct: 1114 QEVYRSQGVSIHDKHIEIIIRQMLKRVNVLESGETNLLPGELCERARFESENRRVVESGG 1173

Query: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258
            +PA+ RPVLMGITKASLAT+SWLSAASFQETTRVLTDAAIN RSD L GLKENVIIGKLI
Sbjct: 1174 QPASARPVLMGITKASLATESWLSAASFQETTRVLTDAAINARSDSLVGLKENVIIGKLI 1233

Query: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYED----QYYSPDFGQATGAAVPLDDYGY 1312
            PAGTGI+RYRNI V+PTEEARAA Y++ +YED    +Y +  FG  +G AVPLD++ Y
Sbjct: 1234 PAGTGISRYRNIRVEPTEEARAAMYSVGAYEDGGSVEYGA--FGTGSGQAVPLDEFDY 1289


>sp|Q2JFI4|RPOC_FRASC Tax_Id=106370 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Frankia sp.]
          Length = 1295

 Score = 1816 bits (4705), Expect = 0.0
 Identities = 925/1317 (70%), Positives = 1065/1317 (80%), Gaps = 34/1317 (2%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIRQWS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEK+IYFAAY+IT VD + RH +L TLEA + VE++ +ED+++AD+E R       
Sbjct: 121  APKDLEKVIYFAAYMITKVDTDARHRDLPTLEARIGVEKQQLEDKKNADVEVRQKRLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVR+S EREMRQLRDR QR++D L+ ++  F  +  + L  DE L
Sbjct: 181  LAQLEAEGAKGDARRKVRESAEREMRQLRDRVQRKIDDLDRVFDRFKNMKVQDLEPDELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL+DR+G YF G MGAE++Q+ +  FD+ AEAE LR+ IR+GKGQ             
Sbjct: 241  YRELRDRFGAYFDGGMGAEALQRRLADFDLAAEAESLRETIRSGKGQKKARALKRLKVVS 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             F  + NSPMGMVLD VPVIPP+LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRL+DL
Sbjct: 301  AFLNTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSD+LKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVER R
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P VWDVLEEVI EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQ+HPLVC AFNADFDGDQ
Sbjct: 481  PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMP LDMVTG+++L+   EG  G   
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPSLDMVTGVFHLSRLAEGALG--- 597

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAE-IEDALFGHNGWQPG 659
                   E   +SS AEA MA D   ++++AKI+VRL    PP++ +  A      W  G
Sbjct: 598  -------EGRSFSSVAEAQMAFDAREVALQAKIRVRLRDTTPPSDWVPPA-----DWVTG 645

Query: 660  DAWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDS 719
            D +T ETT GR L NE LP GY F+N Q++KK QAAI+NDLAERYP I VA T+D LK +
Sbjct: 646  DVFTLETTFGRCLLNEALPEGYPFINAQLNKKAQAAIVNDLAERYPKIQVAATLDALKSA 705

Query: 720  GFYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWK 779
            GFYWATRSGVTV++ DV+ PP K EILD YE+RA++V+KQF RG L+ +ER   LV+IW 
Sbjct: 706  GFYWATRSGVTVAIEDVVAPPNKAEILDDYEQRADRVQKQFDRGFLSDEERRSELVQIWT 765

Query: 780  EATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSS 839
            EAT+++ +A+ E++P  NP+  +V+SGA GN  Q R LAGM+GLV+NPKGE IPRPIK++
Sbjct: 766  EATNKIAEAMEENFPETNPVYVLVNSGAAGNMMQIRQLAGMRGLVSNPKGEIIPRPIKAN 825

Query: 840  FREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMV 899
            FREGLTVLEYFI+THGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI+ 
Sbjct: 826  FREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREEDCGTERGILT 885

Query: 900  ELAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQ 959
             +A +  DG L+RD Y ETSAYARTL +DA+D  G V+V  G D GD  I   + AGI Q
Sbjct: 886  RIARKGADGVLVRDRYAETSAYARTLASDAIDANGEVIVPAGTDAGDVAISQIIEAGIEQ 945

Query: 960  VKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGG 1019
            V+VRS L              RS+ATGKLVD+GEAVGIVAAQSIGEPGTQLTMRTFH GG
Sbjct: 946  VRVRSALTCESRMGVCAQCYGRSLATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHSGG 1005

Query: 1020 V-GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078
            V G+DIT GLPRV ELFEAR P+GKAPI +V+GRV++E+ E+ +K+ +VPDDG +E+ Y 
Sbjct: 1006 VAGDDITQGLPRVVELFEARSPKGKAPITEVSGRVKIEETEKTFKVVVVPDDGSDEIAY- 1064

Query: 1079 KLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138
             +S+R RLRV            +GDH+EVG Q+++G+ DPHEVLR+ GPR+VQ+HLV +V
Sbjct: 1065 PVSRRSRLRV-----------REGDHIEVGSQIVDGAVDPHEVLRILGPRQVQLHLVDQV 1113

Query: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESG 1198
            QEVYR+QGVSIHDKHIE+I+RQML+RV +++SG T  LPG L +RA FEAENRRVV   G
Sbjct: 1114 QEVYRSQGVSIHDKHIEIIIRQMLKRVNVLESGDTTLLPGELCERARFEAENRRVVETGG 1173

Query: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258
            +PA+ RPVLMGITKASLAT+SWLSAASFQETTRVLTDAAIN RSD L GLKENVIIGKLI
Sbjct: 1174 QPASARPVLMGITKASLATESWLSAASFQETTRVLTDAAINARSDSLVGLKENVIIGKLI 1233

Query: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYED---QYYSPDFGQATGAAVPLDDYGY 1312
            PAGTGI+RYRNI V+PTEEARAA Y++ +YED   +Y +  FG  +G AVPLD++ Y
Sbjct: 1234 PAGTGISRYRNIRVEPTEEARAAMYSVGAYEDGGVEYGA--FGTGSGQAVPLDEFDY 1288


>tr|C8NX30|C8NX30_9CORY Tax_Id=585529 (rpoC)SubName: Full=DNA-directed
            RNA polymerase, beta-prime subunit;
            EC=2.7.7.6;[Corynebacterium genitalium ATCC 33030]
          Length = 1336

 Score = 1816 bits (4703), Expect = 0.0
 Identities = 925/1333 (69%), Positives = 1075/1333 (80%), Gaps = 19/1333 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            + DVN FDELRIGLATAEDIR+WS+GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC
Sbjct: 1    MFDVNLFDELRIGLATAEDIRRWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
             CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   SCGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLE+IIYFAA +ITSVD E RHN++STLEAEM++E+K +E   +A++  R       
Sbjct: 121  APKDLERIIYFAANIITSVDEEARHNDMSTLEAEMILEKKEIEQDTEAEIADRAQKLEED 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         R+KV+++ ++EM+ +R+  +RE++ L++IW+TF KLAPKQ+I+DENL
Sbjct: 181  LAELEASGAAASARKKVQNAADKEMQHMREAGEREIEHLDEIWNTFIKLAPKQMIIDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            Y EL DRY +YFTG MGAE+IQ LI  FD+DAE+E LR +I  GKGQ             
Sbjct: 241  YEELVDRYEDYFTGGMGAEAIQTLIRNFDLDAESEELRHIIAEGKGQKKVRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ+SGN P GM+LDA+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+IDL
Sbjct: 301  AFQRSGNDPAGMILDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVI+VGPQLK+H+CGLPKLMALELFKPFVMKRLVD ++AQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIIVGPQLKMHECGLPKLMALELFKPFVMKRLVDNDYAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P+VWDVLEE IAEHPVLLNRAPTLHRLGIQAFEP+LVEGKAIQLHPL CEAFNADFDGDQ
Sbjct: 481  PEVWDVLEEAIAEHPVLLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTT---EVE-GDK 596
            MAVHLPLSAEAQAEAR+LMLSSNNILSPASG+PLAMPRLDMVTGLY+LT    E E G +
Sbjct: 541  MAVHLPLSAEAQAEARVLMLSSNNILSPASGKPLAMPRLDMVTGLYFLTMVKGEGEIGGE 600

Query: 597  GAYQPAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGW 656
            GAY PA ++ P  GVYSS  EAIMA DRGVL ++A IKVR+  LRP AEIE   F  +GW
Sbjct: 601  GAYAPADENGPARGVYSSHREAIMAYDRGVLGLQAPIKVRIDHLRPTAEIEAEQF-PDGW 659

Query: 657  QPGDAWTAETTLGRVLFNELLPLGYAFVNKQMHKK------VQAAIINDLAERYPMIVVA 710
            + G +W A+TTLGR++FNE+LP  + +    M +K      +   II  + E+YPMI VA
Sbjct: 660  EKGQSWMADTTLGRIMFNEMLPFNFPYQEGAMVRKGGKDKVLLGDIIQAMVEKYPMITVA 719

Query: 711  QTVDKLKDSGFYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVE-KQFQRGALNHDE 769
            QT+DKLKD+GFYWATRSG+T++M+DVLV P K EILD YE  AE +E K F++GAL   +
Sbjct: 720  QTMDKLKDAGFYWATRSGITITMSDVLVLPNKTEILDEYEREAEAIERKYFEKGALTEKD 779

Query: 770  RNEALVEIWKEATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKG 829
            R + LVE+W++ATD+VG+A+   YP DNPI  IV SGA GN  Q  TLAGMKG+V N +G
Sbjct: 780  RYDRLVELWQDATDKVGKAVEALYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSRG 839

Query: 830  EFIPRPIKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREH 889
            E+I RPIK+SFREGL+V+EYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVRE 
Sbjct: 840  EYITRPIKTSFREGLSVMEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREE 899

Query: 890  DCQTERGIMVELAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEI 949
            DC T +G+ V +AE  G G   R   +ETS   R L +DA D  GNV++  G DL +  I
Sbjct: 900  DCGTHQGVKVPVAEAAGTGRFNRHDLVETSVSGRVLASDATDADGNVLLEAGSDLSEERI 959

Query: 950  EACLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQ 1009
            +A + AGI  VKVRSVL              +SMATGKLVDIGEAVGIVAAQSIGEPGTQ
Sbjct: 960  DALVDAGIESVKVRSVLTCQTPTGVCAKCYGKSMATGKLVDIGEAVGIVAAQSIGEPGTQ 1019

Query: 1010 LTMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPD 1069
            LTMRTFHQGGVG DITGGLPRVQELFEARVP+ +APIA V G + LED   F+ +TI P+
Sbjct: 1020 LTMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGEISLEDEGNFWTLTIHPE 1079

Query: 1070 DGGEEVVYDKLSKRQRLRVFKH------EDGSERVLSDGDHVEVGQQLMEGSADPHEVLR 1123
            DG ++VVY+KLSKRQ L   +       E   ER L DGD V+VG +L+ G+ADPH+VL 
Sbjct: 1080 DGSDDVVYEKLSKRQGLAQVRRPMESNPEAMIERSLRDGDTVKVGDRLLRGAADPHDVLE 1139

Query: 1124 VQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDR 1183
            V G R V+ HL+ EVQ VYR QGVSIHDKHIE+I+RQMLRR T+ID+G+TEFLPG+L+D 
Sbjct: 1140 VLGRRGVEKHLIDEVQAVYRTQGVSIHDKHIEIIIRQMLRRGTVIDAGSTEFLPGTLVDL 1199

Query: 1184 AEFEAENRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSD 1243
            +E    N + VAE GEPA  R  +MGITKASLAT+SWLSAASFQETTRVLTDAAIN RSD
Sbjct: 1200 SEARQINGQAVAEGGEPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSD 1259

Query: 1244 KLNGLKENVIIGKLIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGQATG 1302
            KL GLKENVIIGKLIPAGTGI+RYRNI+V+PTE AR+AAY+IP++ D  Y  + +G+ TG
Sbjct: 1260 KLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARSAAYSIPTFGDAIYGDEGYGEFTG 1319

Query: 1303 AAVPLDDYGYSDY 1315
            A+VPLD+YG   Y
Sbjct: 1320 ASVPLDEYGMGGY 1332


>tr|C0XUK4|C0XUK4_9CORY Tax_Id=525263 (rpoC)RecName: Full=DNA-directed
            RNA polymerase; EC=2.7.7.6;[Corynebacterium
            lipophiloflavum DSM 44291]
          Length = 1332

 Score = 1813 bits (4695), Expect = 0.0
 Identities = 925/1332 (69%), Positives = 1073/1332 (80%), Gaps = 23/1332 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            + DVN FDELRIGLATA+DIR+WS+GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC
Sbjct: 1    MFDVNLFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
             CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLE+IIYFAA +ITSVD+E RHN+LSTLEAEM++E+K VE   ++++  R       
Sbjct: 121  APKDLERIIYFAANIITSVDDEARHNDLSTLEAEMILEKKEVEADANSEIAERAQKLEED 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         R+KV+ + ++EM  +R  A+RE++RL+++W TF KLAPKQ+++DENL
Sbjct: 181  LAELEAAGANASSRKKVQQAADKEMTHIRQAAEREVERLDEVWQTFVKLAPKQMVIDENL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            Y EL DRY +YFTG MGAE+IQ LI  FD++AEAE LR VI  GKGQ             
Sbjct: 241  YEELMDRYEDYFTGGMGAEAIQTLIRNFDLEAEAEELRSVIAEGKGQKKVRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             F +SGN P GM+LDA+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+IDL
Sbjct: 301  AFLRSGNDPAGMILDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVI+VGPQLKLH+CGLPKLMALELFKPFVMKRLVD ++AQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVDNDYAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P+VWDVLEE I+EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQLHPL CEAFNADFDGDQ
Sbjct: 481  PEVWDVLEEAISEHPVLLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLT-----TEVEGD 595
            MAVHLPLSAEAQAEAR+LMLSSNNILSPASG+PLAMPRLDMVTGLY+LT     TE+ G 
Sbjct: 541  MAVHLPLSAEAQAEARVLMLSSNNILSPASGKPLAMPRLDMVTGLYFLTMLKGGTEI-GG 599

Query: 596  KGAYQPAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNG 655
            +GAY PA ++ PE GVY+S  EAIMA DRGVL ++A IKVR+  LRP  EIE  LF  +G
Sbjct: 600  EGAYAPADENGPERGVYTSYREAIMAYDRGVLGLQAPIKVRIDHLRPTEEIEAELF-PDG 658

Query: 656  WQPGDAWTAETTLGRVLFNELLPLGYAFVNKQMHKK-------VQAAIINDLAERYPMIV 708
            W+ G +W AETTLGR+LFNE+LP  + +    M +K       +   +I  + E+YPMI 
Sbjct: 659  WEKGQSWMAETTLGRILFNEMLPFNFPYQEGAMVRKGGGSGKVLLGDVIQSMVEKYPMIT 718

Query: 709  VAQTVDKLKDSGFYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQF-QRGALNH 767
            VAQT+DK+KD+GFYWATRSGVT+SM+DVLV P K E+L+ YE  AE++E++F ++GAL  
Sbjct: 719  VAQTLDKMKDAGFYWATRSGVTISMSDVLVLPNKVEVLEQYEREAEEIERKFWEKGALTE 778

Query: 768  DERNEALVEIWKEATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNP 827
            + R + LVE+W++AT++VGQA+ + YP DNPI  IV SGA GN  Q  TLAGMKG+V N 
Sbjct: 779  ENRYDRLVELWQDATNKVGQAVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNS 838

Query: 828  KGEFIPRPIKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVR 887
            +GE+I RPIK+SFREGL+V+EYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVR
Sbjct: 839  RGEYITRPIKTSFREGLSVMEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVR 898

Query: 888  EHDCQTERGIMVELAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDP 947
            E DC T +G+ V +A + GD   +RD  +ETS   R + ADA D  G VV+  G DL + 
Sbjct: 899  EDDCGTHQGVKVPVARQVGD-KWVRDELVETSVSGRVVAADAKDADGTVVLEAGADLTEE 957

Query: 948  EIEACLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPG 1007
             I+  +AAG+ +VKVRSVL              +SMA+GKLVDIGEAVGIVAAQSIGEPG
Sbjct: 958  NIDRLVAAGVAEVKVRSVLTCQTPTGVCAKCYGKSMASGKLVDIGEAVGIVAAQSIGEPG 1017

Query: 1008 TQLTMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIV 1067
            TQLTMRTFHQGGVG DITGGLPRVQELFEARVP+ +APIA V G V LED   F+ +TI 
Sbjct: 1018 TQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGTVTLEDEGNFWTLTIH 1077

Query: 1068 PDDGGEEVVYDKLSKRQRLRVFKHEDGS------ERVLSDGDHVEVGQQLMEGSADPHEV 1121
            PDDG + VVY+KLSKRQ L   +    S      ER L +GDHVEVG +L+ G+ADPH+V
Sbjct: 1078 PDDGSDVVVYEKLSKRQGLAQVRRPMESNPNAMIERSLREGDHVEVGDRLLRGAADPHDV 1137

Query: 1122 LRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLI 1181
            L V G R V+ HL+ EVQ VYR QGVSIHDKHIE+I+RQMLRR  +IDSG TEFLPG+L+
Sbjct: 1138 LEVLGRRGVEKHLIDEVQAVYRTQGVSIHDKHIEIIIRQMLRRGNVIDSGDTEFLPGTLV 1197

Query: 1182 DRAEFEAENRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCR 1241
            D AE    N   VA+ G+PA  R  +MGITKASLAT+SWLSAASFQETTRVLTDAAIN R
Sbjct: 1198 DLAEARQVNAATVADGGQPAEMRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKR 1257

Query: 1242 SDKLNGLKENVIIGKLIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGQA 1300
            SDKL GLKENVIIGKLIPAGTGI RYRNI V+PTE AR+AAY IPS+ D  Y  D +G+ 
Sbjct: 1258 SDKLIGLKENVIIGKLIPAGTGIARYRNIQVKPTEAARSAAYAIPSFGDSIYGDDGYGEF 1317

Query: 1301 TGAAVPLDDYGY 1312
            TGA+VPLD+YG+
Sbjct: 1318 TGASVPLDEYGF 1329


>sp|A8LC63|RPOC_FRASN Tax_Id=298653 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Frankia sp.]
          Length = 1296

 Score = 1811 bits (4691), Expect = 0.0
 Identities = 928/1324 (70%), Positives = 1066/1324 (80%), Gaps = 36/1324 (2%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIRQWS+GEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEK+IYFAAY+IT VD + RH +L TLEA + VE++ +ED+++AD+E R       
Sbjct: 121  APKDLEKVIYFAAYMITKVDIDSRHRDLPTLEARIGVEKQQLEDKKNADVETRQRKLEED 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKVR+S EREMRQ+RDR+QR++D L+ ++  F  +  + L  DE L
Sbjct: 181  LAQLEAEGAKGDARRKVRESAEREMRQIRDRSQRKIDDLDRVFDRFKNMKVQDLEPDELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            +REL+DR+G+YF G MGAE++Q  +  FD+ AEAE LR+ IR+GKGQ             
Sbjct: 241  FRELRDRFGQYFEGGMGAEALQHRLADFDLAAEAESLRETIRSGKGQKKARALKRLKVVS 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             F  + NSPMGMVLD VPVIPP+LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRL+DL
Sbjct: 301  AFLNTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSD+LKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGPQLKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVER R
Sbjct: 421  RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P VWDVLEEVI EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQ+HPLVC AFNADFDGDQ
Sbjct: 481  PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMP LDMVTG+++L+   EG  G   
Sbjct: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPSLDMVTGVFHLSRVSEGAIG--- 597

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD 660
                   E   +SS AEA MA D   + ++A+I+VRL +  PPAE          W PGD
Sbjct: 598  -------EGRFFSSVAEAQMAFDAREIHLQARIQVRLRESTPPAEWAPPA----DWLPGD 646

Query: 661  AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG 720
             +T ETT GR L NE LP GY F+N Q++KK QAAI+NDLAERYP I VA T+D LK +G
Sbjct: 647  PFTLETTFGRCLLNEALPEGYPFINAQLNKKAQAAIVNDLAERYPKIQVAATLDALKSAG 706

Query: 721  FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE 780
            FYWATRSGVTV++ DV+ PP K +ILD YE+RAE+VEKQF RG L+ +ER   LV+IW E
Sbjct: 707  FYWATRSGVTVAIEDVVAPPNKAQILDEYEQRAERVEKQFGRGFLSDEERRSELVQIWTE 766

Query: 781  ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF 840
            AT+++ +A+  ++P  NP+ T+V+SGA GN  Q R LAGM+GLV+NPKGE IPRPIK++F
Sbjct: 767  ATNKIAEAMEANFPETNPVYTLVNSGAAGNMMQIRQLAGMRGLVSNPKGEIIPRPIKANF 826

Query: 841  REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE 900
            REGLTV+EYFI+THGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE DC TERGI+  
Sbjct: 827  REGLTVVEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREEDCGTERGILTR 886

Query: 901  LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV 960
            +A +  DG L+RD Y ETSAYAR+L +DAVD  G VVV  G D GD  I   + AGI  V
Sbjct: 887  IARKGPDGVLVRDRYAETSAYARSLASDAVDAQGEVVVPAGADAGDVVIGQIIEAGIESV 946

Query: 961  KVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV 1020
            +VRS L              RS+ATGKLVD+GEAVGIVAAQSIGEPGTQLTMRTFH GGV
Sbjct: 947  RVRSALTCESRMGVCAHCYGRSLATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHSGGV 1006

Query: 1021 -GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDK 1079
             G+DIT GLPRV ELFEAR P+GKAPI++VTGRV++E+ E+ +K+ IVPDDG EE+ Y  
Sbjct: 1007 AGDDITQGLPRVVELFEARSPKGKAPISEVTGRVKIEETEKTFKVVIVPDDGSEEIAY-P 1065

Query: 1080 LSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQ 1139
            +S+R RLRV            +G+ VEVG QL++G+ DPHEVLR+ GPR+VQ+HLV +VQ
Sbjct: 1066 VSRRSRLRV-----------REGERVEVGAQLIDGAVDPHEVLRILGPRQVQLHLVDQVQ 1114

Query: 1140 EVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGE 1199
            EVYR+QGVSIHDKHIE+I+RQML+RV +++SG T  LPG L++RA FE ENRRVV   G+
Sbjct: 1115 EVYRSQGVSIHDKHIEIIIRQMLKRVNVLESGETTLLPGELVERARFEGENRRVVEIGGQ 1174

Query: 1200 PAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIP 1259
            PA+ RPVLMGITKASLAT+SWLSAASFQETTRVLTDAAIN RSD L GLKENVIIGKLIP
Sbjct: 1175 PASARPVLMGITKASLATESWLSAASFQETTRVLTDAAINARSDSLVGLKENVIIGKLIP 1234

Query: 1260 AGTGINRYRNIAVQPTEEARAAAYTIPSYED----QYYSPDFGQATGAAVPLDDYGY--- 1312
            AGTGI+RYRNI V+PT+EARAA Y++  YED    +Y +  FG  +G AVPLD++ Y   
Sbjct: 1235 AGTGISRYRNIRVEPTDEARAAMYSVSGYEDGASVEYGA--FGAGSGQAVPLDEFDYRSS 1292

Query: 1313 SDYR 1316
             DYR
Sbjct: 1293 GDYR 1296


>sp|Q6NJF6|RPOC_CORDI Tax_Id=1717 (rpoC)RecName: Full=DNA-directed RNA
            polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit
            beta';[Corynebacterium diphtheriae]
          Length = 1336

 Score = 1810 bits (4688), Expect = 0.0
 Identities = 930/1333 (69%), Positives = 1075/1333 (80%), Gaps = 25/1333 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            ++DVNFFDELRIGLATA+DIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC
Sbjct: 1    MIDVNFFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
             CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLE+IIYFAA +ITSVD+E RH + +TLEAEM++E+K VE   ++++  R       
Sbjct: 121  APKDLERIIYFAANIITSVDDEARHADQTTLEAEMLLEKKDVEADMESEIAERAAKLEED 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         R KV+ + E+EM+ +R+RA+RE+DRLE+IW TF KLAPKQ+I+DE +
Sbjct: 181  LAELEAAGAKADARNKVKKAAEKEMQHIRERAEREIDRLEEIWQTFIKLAPKQMIIDETI 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            Y EL DRY +YFTG MGAE+IQ LI  FD+D+EAE LR++I NGKGQ             
Sbjct: 241  YEELVDRYEDYFTGGMGAEAIQTLIRNFDLDSEAEELREIINNGKGQKKMRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ+SGN P GMVLD +PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+I+L
Sbjct: 301  AFQRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIEL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVI+VGPQLKLH+CGLPKLMALELFKPFVMKRLV+ ++AQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENDYAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P+VWDVLEE I+EHPV+LNRAPTLHRLGIQAFEP LVEGKAIQLHPL CEAFNADFDGDQ
Sbjct: 481  PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVE----GDK 596
            MAVHLPLSAEAQAEARILML+SNNILSPASG+PLAMPRLDMVTGLYYLT +      G +
Sbjct: 541  MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTMDKNENEIGGQ 600

Query: 597  GAYQPAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGW 656
            GAY  A ++ P  GVYSS AEAIMA DRGVL ++AKIKVR++ LRPP +IE   F   GW
Sbjct: 601  GAYASATEEGPAQGVYSSYAEAIMARDRGVLGLQAKIKVRISHLRPPVDIEAEQF-PEGW 659

Query: 657  QPGDAWTAETTLGRVLFNELLPLGYAFVNKQMHKK-------VQAAIINDLAERYPMIVV 709
              GD W A+TTLGR++FNELLP  Y ++   M +K       +   +INDLA  YPMI V
Sbjct: 660  NKGDVWLADTTLGRIMFNELLPWNYPYLEGVMVRKGGGTGKIMLGDVINDLAATYPMITV 719

Query: 710  AQTVDKLKDSGFYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQF-QRGALNHD 768
            AQT+DK+KD+GFYWATRSGVT++M+DVLV P K+EILD YE  A K+E+++ ++GAL   
Sbjct: 720  AQTMDKMKDAGFYWATRSGVTITMSDVLVLPNKEEILDRYEAEARKIERKYWEQGALTER 779

Query: 769  ERNEALVEIWKEATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPK 828
            ER + LVE+WK+ATDEVG A+ + YP DNPI  IV SGA GN  Q  TLAGMKG+V N K
Sbjct: 780  ERYDRLVELWKDATDEVGNAVEKLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSK 839

Query: 829  GEFIPRPIKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE 888
            G++I RPIK+SFREGL+VLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVRE
Sbjct: 840  GDYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRE 899

Query: 889  HDCQTERGI----MVELAERQGDGT-LIRDPYIETSAYARTLGADAVDEAGNVVVARGED 943
             DC T++GI     VE+ + +G+ T       IETS   R       D  GNV+V  GE+
Sbjct: 900  DDCGTKQGIRVPVAVEVKDAEGNVTGYTGHSLIETSVAGRVAATAVKDAEGNVMVEPGEN 959

Query: 944  LGDPEIEACLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSI 1003
            L D  I+  +AAG+ +VKVRSVL              +SMATGKLVDIGEAVGIVAAQSI
Sbjct: 960  LTDQLIDELIAAGVKEVKVRSVLTCQTPTGVCAKCYGKSMATGKLVDIGEAVGIVAAQSI 1019

Query: 1004 GEPGTQLTMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYK 1063
            GEPGTQLTMRTFHQGGVG DITGGLPRVQELFEARVP+ +APIA V G V L+D   FY 
Sbjct: 1020 GEPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGTVHLDDEGNFYT 1079

Query: 1064 ITIVPDDGGEEVVYDKLSKRQRLRVFKHEDGS------ERVLSDGDHVEVGQQLMEGSAD 1117
            +TI PDDG + VVY+KLSKRQ L   +    S      ER L++GDHVEVG +L+ G AD
Sbjct: 1080 LTINPDDGSDVVVYEKLSKRQGLATVRVPMESNPGAMIERTLAEGDHVEVGDRLLRGPAD 1139

Query: 1118 PHEVLRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLP 1177
            PH+VL V G R V+ HLV EVQ+VYRAQGV+IHDKHIE+I+RQMLRR T+I+SG+TEFLP
Sbjct: 1140 PHDVLEVLGRRGVEQHLVDEVQDVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLP 1199

Query: 1178 GSLIDRAEFEAENRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAA 1237
            G+L+D +E +A N   +A  G+PA  R  +MGITKASLAT+SWLSAASFQETTRVLTDAA
Sbjct: 1200 GTLVDLSEAKAANAEALANGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAA 1259

Query: 1238 INCRSDKLNGLKENVIIGKLIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD- 1296
            IN RSDKL GLKENVIIGKLIPAGTGI+RYRNI+V+PTE AR AAY+IP+Y D  Y  D 
Sbjct: 1260 INKRSDKLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNAAYSIPTYGDSIYGDDG 1319

Query: 1297 FGQATGAAVPLDD 1309
            +G+ TGA+VPLD+
Sbjct: 1320 YGEFTGASVPLDE 1332


>sp|Q8FS96|RPOC_COREF Tax_Id=152794 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit
            beta';[Corynebacterium efficiens]
          Length = 1333

 Score = 1809 bits (4686), Expect = 0.0
 Identities = 932/1332 (69%), Positives = 1069/1332 (80%), Gaps = 24/1332 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVN FDELRIGLATA+DIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC
Sbjct: 1    MLDVNVFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
             CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDL+ IIYF A +ITSVD E RH++ STLEAEM++E+K VE   ++++  R       
Sbjct: 121  APKDLDLIIYFGANIITSVDEEARHSDQSTLEAEMLLEKKDVEADAESEIAERAEKLEED 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKV+++ E+EM+ +R+RA+RE+DRLE+IW TF KLAPKQ+I DE L
Sbjct: 181  LAELEAAGAKADARRKVQNAAEKEMQHIRERAEREIDRLEEIWQTFIKLAPKQMIRDEKL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            Y EL DRY +YFTG MGAESIQ LI  FD+DAEAE LR +I  GKGQ             
Sbjct: 241  YDELVDRYEDYFTGGMGAESIQTLIRGFDLDAEAEELRTIINEGKGQKKMRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ+SGN P GMVL+A+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+I+L
Sbjct: 301  AFQRSGNDPAGMVLNAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIEL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVI+VGPQL+LH+CGLPKLMALELFKPFVMKRLV+  +AQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIIVGPQLRLHECGLPKLMALELFKPFVMKRLVENEYAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P+VWDVLEE I+EHPV+LNRAPTLHRLGIQAFEP+LVEGKAIQLHPL CEAFNADFDGDQ
Sbjct: 481  PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLT----TEVEGDK 596
            MAVHLPLSAEAQAEARILML+SNNILSPASG+PLAMPRLDMVTGLYYLT     E  G +
Sbjct: 541  MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTLKKSPEEFGGQ 600

Query: 597  GAYQPAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGW 656
            GAYQPA ++ PE GVYSS AEAIMA DRGVL ++A +++RL  LRPPAE+E+ LF   GW
Sbjct: 601  GAYQPADENGPEKGVYSSYAEAIMAYDRGVLGLQAPVRIRLDHLRPPAELENELF-PEGW 659

Query: 657  QPGDAWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAA-------IINDLAERYPMIVV 709
              GD W AETTLGRV+FNE+LP  Y ++   M +K   A       ++NDLA RYPMI V
Sbjct: 660  NQGDTWLAETTLGRVMFNEILPWNYPYLEGIMVRKGGGADKIMLGDVVNDLAARYPMITV 719

Query: 710  AQTVDKLKDSGFYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDE 769
            AQT+DK+KD+GFYW+TRSGVT++M+DVLV P K EILD YE  A ++E ++ RG L   E
Sbjct: 720  AQTMDKMKDAGFYWSTRSGVTIAMSDVLVLPNKDEILDRYEAAARQIETKYNRGKLTGRE 779

Query: 770  RNEALVEIWKEATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKG 829
            R + LVE+WK+ATDEVGQA+ + YP DNPI  IV SGA GN  Q  TLAGMKG+V N KG
Sbjct: 780  RYDRLVELWKDATDEVGQAVEDIYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG 839

Query: 830  EFIPRPIKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREH 889
            ++I RPIK+SFREGLTVLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVR  
Sbjct: 840  DYITRPIKTSFREGLTVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRVE 899

Query: 890  DCQTERGIMVELAERQGDGT-----LIRDPYIETSAYARTLGADAVDEAGNVVVARGEDL 944
            DC T +G+ V +A    D T       R   IETS   R L  DA +  G V++A G DL
Sbjct: 900  DCGTRQGVRVPVAAEVLDATGAVSGYTRHDLIETSVSGRVLAGDATNAEGEVILAAGSDL 959

Query: 945  GDPEIEACLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIG 1004
             +  I+  + AGI QVKVRSVL              +SMA+GK VDIGEAVGIVAAQSIG
Sbjct: 960  TELNIDLLVEAGIQQVKVRSVLTCQTPTGVCAKCYGKSMASGKQVDIGEAVGIVAAQSIG 1019

Query: 1005 EPGTQLTMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKI 1064
            EPGTQLTMRTFHQGGVG DITGGLPRVQELFEARVP+  APIA   G + LED   FY +
Sbjct: 1020 EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNLAPIASADGVIHLEDEGNFYTL 1079

Query: 1065 TIVPDDGGEEVVYDKLSKRQRL---RV-FKHEDGS--ERVLSDGDHVEVGQQLMEGSADP 1118
            T+VPDDG + VVYDKLSKRQ L   RV  +H   +  ER L++GDHV VG +L+ G+A P
Sbjct: 1080 TLVPDDGSDNVVYDKLSKRQGLASIRVPMEHNPAAFIERTLAEGDHVTVGTRLLRGAAAP 1139

Query: 1119 HEVLRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPG 1178
            H+VL V G R V+ HL+ EVQ VYRAQGV+IHDKHIE+I+RQMLRR T+I+SG+TEFLPG
Sbjct: 1140 HDVLEVLGRRGVEQHLIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPG 1199

Query: 1179 SLIDRAEFEAENRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAI 1238
            SL+D +E +  N   +A  G+PA  R  +MGITKASLAT+SWLSAASFQETTRVLTDAAI
Sbjct: 1200 SLVDLSEAKLANSEAIANGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAI 1259

Query: 1239 NCRSDKLNGLKENVIIGKLIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-F 1297
            N RSDKL GLKENVIIGKLIPAGTGI+RYRNI+++PTE AR AAY+IP+Y +  Y  D F
Sbjct: 1260 NKRSDKLIGLKENVIIGKLIPAGTGISRYRNISIKPTEAARNAAYSIPTYGESIYGDDGF 1319

Query: 1298 GQATGAAVPLDD 1309
            G+ TGA+VPLD+
Sbjct: 1320 GEFTGASVPLDE 1331


>tr|C8NSA9|C8NSA9_COREF Tax_Id=196164 (rpoC)SubName: Full=DNA-directed
            RNA polymerase, beta-prime subunit;
            EC=2.7.7.6;[Corynebacterium efficiens YS-314]
          Length = 1333

 Score = 1809 bits (4686), Expect = 0.0
 Identities = 932/1332 (69%), Positives = 1069/1332 (80%), Gaps = 24/1332 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVN FDELRIGLATA+DIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC
Sbjct: 1    MLDVNVFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
             CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDL+ IIYF A +ITSVD E RH++ STLEAEM++E+K VE   ++++  R       
Sbjct: 121  APKDLDLIIYFGANIITSVDEEARHSDQSTLEAEMLLEKKDVEADAESEIAERAEKLEED 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKV+++ E+EM+ +R+RA+RE+DRLE+IW TF KLAPKQ+I DE L
Sbjct: 181  LAELEAAGAKADARRKVQNAAEKEMQHIRERAEREIDRLEEIWQTFIKLAPKQMIRDEKL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            Y EL DRY +YFTG MGAESIQ LI  FD+DAEAE LR +I  GKGQ             
Sbjct: 241  YDELVDRYEDYFTGGMGAESIQTLIRGFDLDAEAEELRTIINEGKGQKKMRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ+SGN P GMVL+A+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+I+L
Sbjct: 301  AFQRSGNDPAGMVLNAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIEL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVI+VGPQL+LH+CGLPKLMALELFKPFVMKRLV+  +AQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIIVGPQLRLHECGLPKLMALELFKPFVMKRLVENEYAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P+VWDVLEE I+EHPV+LNRAPTLHRLGIQAFEP+LVEGKAIQLHPL CEAFNADFDGDQ
Sbjct: 481  PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLT----TEVEGDK 596
            MAVHLPLSAEAQAEARILML+SNNILSPASG+PLAMPRLDMVTGLYYLT     E  G +
Sbjct: 541  MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTLKKSPEEFGGQ 600

Query: 597  GAYQPAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGW 656
            GAYQPA ++ PE GVYSS AEAIMA DRGVL ++A +++RL  LRPPAE+E+ LF   GW
Sbjct: 601  GAYQPADENGPEKGVYSSYAEAIMAYDRGVLGLQAPVRIRLDHLRPPAELENELF-PEGW 659

Query: 657  QPGDAWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAA-------IINDLAERYPMIVV 709
              GD W AETTLGRV+FNE+LP  Y ++   M +K   A       ++NDLA RYPMI V
Sbjct: 660  NQGDTWLAETTLGRVMFNEILPWNYPYLEGIMVRKGGGADKIMLGDVVNDLAARYPMITV 719

Query: 710  AQTVDKLKDSGFYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDE 769
            AQT+DK+KD+GFYW+TRSGVT++M+DVLV P K EILD YE  A ++E ++ RG L   E
Sbjct: 720  AQTMDKMKDAGFYWSTRSGVTIAMSDVLVLPNKDEILDRYEAAARQIETKYNRGKLTGRE 779

Query: 770  RNEALVEIWKEATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKG 829
            R + LVE+WK+ATDEVGQA+ + YP DNPI  IV SGA GN  Q  TLAGMKG+V N KG
Sbjct: 780  RYDRLVELWKDATDEVGQAVEDIYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG 839

Query: 830  EFIPRPIKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREH 889
            ++I RPIK+SFREGLTVLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVR  
Sbjct: 840  DYITRPIKTSFREGLTVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRVE 899

Query: 890  DCQTERGIMVELAERQGDGT-----LIRDPYIETSAYARTLGADAVDEAGNVVVARGEDL 944
            DC T +G+ V +A    D T       R   IETS   R L  DA +  G V++A G DL
Sbjct: 900  DCGTRQGVRVPVAAEVLDATGAVSGYTRHDLIETSVSGRVLAGDATNAEGEVILAAGSDL 959

Query: 945  GDPEIEACLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIG 1004
             +  I+  + AGI QVKVRSVL              +SMA+GK VDIGEAVGIVAAQSIG
Sbjct: 960  TELNIDLLVEAGIQQVKVRSVLTCQTPTGVCAKCYGKSMASGKQVDIGEAVGIVAAQSIG 1019

Query: 1005 EPGTQLTMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKI 1064
            EPGTQLTMRTFHQGGVG DITGGLPRVQELFEARVP+  APIA   G + LED   FY +
Sbjct: 1020 EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNLAPIASADGVIHLEDEGNFYTL 1079

Query: 1065 TIVPDDGGEEVVYDKLSKRQRL---RV-FKHEDGS--ERVLSDGDHVEVGQQLMEGSADP 1118
            T+VPDDG + VVYDKLSKRQ L   RV  +H   +  ER L++GDHV VG +L+ G+A P
Sbjct: 1080 TLVPDDGSDNVVYDKLSKRQGLASIRVPMEHNPAAFIERTLAEGDHVTVGTRLLRGAAAP 1139

Query: 1119 HEVLRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPG 1178
            H+VL V G R V+ HL+ EVQ VYRAQGV+IHDKHIE+I+RQMLRR T+I+SG+TEFLPG
Sbjct: 1140 HDVLEVLGRRGVEQHLIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPG 1199

Query: 1179 SLIDRAEFEAENRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAI 1238
            SL+D +E +  N   +A  G+PA  R  +MGITKASLAT+SWLSAASFQETTRVLTDAAI
Sbjct: 1200 SLVDLSEAKLANSEAIANGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAI 1259

Query: 1239 NCRSDKLNGLKENVIIGKLIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-F 1297
            N RSDKL GLKENVIIGKLIPAGTGI+RYRNI+++PTE AR AAY+IP+Y +  Y  D F
Sbjct: 1260 NKRSDKLIGLKENVIIGKLIPAGTGISRYRNISIKPTEAARNAAYSIPTYGESIYGDDGF 1319

Query: 1298 GQATGAAVPLDD 1309
            G+ TGA+VPLD+
Sbjct: 1320 GEFTGASVPLDE 1331


>tr|C4RBP6|C4RBP6_9ACTO Tax_Id=219305 RecName: Full=DNA-directed RNA
            polymerase; EC=2.7.7.6;[Micromonospora sp. ATCC 39149]
          Length = 1294

 Score = 1808 bits (4684), Expect = 0.0
 Identities = 914/1318 (69%), Positives = 1062/1318 (80%), Gaps = 26/1318 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIRQWS+GEVKKPETINYRTLKPEKDGLFCEKIFGP RDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTR+KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFA+YV+TSVD E RH +LST+E E++ E++  E+ RD+++E R       
Sbjct: 121  APKDLEKIIYFASYVVTSVDAESRHRDLSTIENEILAEKRQSENSRDSEIEKRAAKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKV++ GEREMRQ+RDRAQRE+DRL+++  TF KL PKQL+ DE L
Sbjct: 181  LAELEAEGAKADVRRKVKEGGEREMRQIRDRAQREIDRLDEVLDTFRKLEPKQLVTDELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL+DR+GEYFTG MGAE+I+ L++  D+DAEAE LR+ IR+GKGQ             
Sbjct: 241  YRELRDRFGEYFTGGMGAEAIKALVQNMDLDAEAESLRETIRSGKGQRKIRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             F  + NSP+GMVLD VPVIPP+LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFLNTRNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSD+LKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGP+LKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPKLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P VWDVLEEVI EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQ+HPLVC AFNADFDGDQ
Sbjct: 481  PVVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVH+PLSAEAQAEARILMLSSNNIL PA G+P+ MP  DMV GLY+LT    G+KG   
Sbjct: 541  MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMVIGLYHLTHLTTGEKG--- 597

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQL-RPPAEIEDALFGHNGWQPG 659
                   E   +SS AEA MA D G L ++A +++RL  L        +      GW  G
Sbjct: 598  -------EGRAFSSDAEARMAFDAGELHLQAPVRIRLRGLVGVDNGAGEPWVAPEGWVEG 650

Query: 660  DAWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDS 719
            +  T ETTLGRVLFNE LP GY FVN ++ K   +AI+NDLAER+P + +A T+D LK++
Sbjct: 651  EPLTVETTLGRVLFNETLPQGYRFVNYEIRKGQLSAIVNDLAERFPKVALAATLDGLKEA 710

Query: 720  GFYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWK 779
            GF+WAT SGVT+ M DV+ PPRK+EIL+ YE+ A++++KQ+QRG +  +ER   L+EIW 
Sbjct: 711  GFHWATWSGVTIGMEDVIAPPRKREILERYEKEADRIDKQYQRGLMTAEERRGELIEIWT 770

Query: 780  EATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSS 839
            +AT+EV + +    P +NP+  +++SGA GN  Q R +A ++GLV NPKGE IPRPIK+S
Sbjct: 771  KATNEVAKEMDTALPQENPLWKMINSGARGNLLQLRQIAAIRGLVANPKGEIIPRPIKAS 830

Query: 840  FREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMV 899
            +REGL+VLEYFI+THGARKGLADTALRTADSGYLTRRLVDVSQDVI+RE DC T+R I +
Sbjct: 831  YREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRAIPM 890

Query: 900  ELAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQ 959
            ++ ER+ DG L    + ETS +ARTL  D     GN+V  RG+D+    ++A +AAG   
Sbjct: 891  QIGERR-DGKLYVHEHAETSVHARTLADDIKGPDGNIVAHRGQDINSILVDAIVAAGTET 949

Query: 960  VKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGG 1019
            V+VRSVL              RS+ TGK VD+GEAVGI+AAQSIGEPGTQLTMRTFH GG
Sbjct: 950  VRVRSVLTCESKLGVCGACYGRSLPTGKTVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGG 1009

Query: 1020 V-GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYD 1078
            V GEDIT GLPRVQE+FEARVP+GKAPIAD  GR+R+EDGER  KI +VPDDG +E+VYD
Sbjct: 1010 VAGEDITQGLPRVQEIFEARVPKGKAPIADTPGRIRIEDGERSRKIIVVPDDGSDEIVYD 1069

Query: 1079 KLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREV 1138
            K+SKR RLR             DGDHVEVG++L EG+ DPHE+LR+ GPR VQ+HL +EV
Sbjct: 1070 KISKRVRLRA-----------HDGDHVEVGEKLTEGTIDPHELLRILGPRAVQVHLTQEV 1118

Query: 1139 QEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESG 1198
            QEVYR+QGV IHDKHIE+I+RQML+RVT+IDSG+TEFLPG L+DRA FE+ENRR+V+E G
Sbjct: 1119 QEVYRSQGVLIHDKHIEIIIRQMLKRVTVIDSGSTEFLPGVLVDRALFESENRRLVSEGG 1178

Query: 1199 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLI 1258
            EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAI+ RSD L GLKENVIIGKLI
Sbjct: 1179 EPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAIHARSDSLIGLKENVIIGKLI 1238

Query: 1259 PAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR 1316
            PAGTGI++YRN+ V+PTEEA+A  Y++  Y +  Y   FG A+G AVPLDD+ +  YR
Sbjct: 1239 PAGTGISKYRNVRVEPTEEAKAKVYSMTGYPETDYG--FGPASGQAVPLDDFDFGSYR 1294


>sp|Q8NT25|RPOC_CORGL Tax_Id=1718 (rpoC)RecName: Full=DNA-directed RNA
            polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit
            beta';[Corynebacterium glutamicum]
          Length = 1333

 Score = 1806 bits (4677), Expect = 0.0
 Identities = 924/1332 (69%), Positives = 1070/1332 (80%), Gaps = 24/1332 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVN FDELRIGLATA+DIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC
Sbjct: 1    MLDVNVFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
             CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDL+ IIYF A +ITSVD E RH++ +TLEAEM++E+K VE   ++D+  R       
Sbjct: 121  APKDLDLIIYFGANIITSVDEEARHSDQTTLEAEMLLEKKDVEADAESDIAERAEKLEED 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKV+ + ++EM+ +R+RAQRE+DRL+++W TF KLAPKQ+I DE L
Sbjct: 181  LAELEAAGAKADARRKVQAAADKEMQHIRERAQREIDRLDEVWQTFIKLAPKQMIRDEKL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            Y EL DRY +YFTG MGAESI+ LI+ FD+DAEAE LRD+I NGKGQ             
Sbjct: 241  YDELIDRYEDYFTGGMGAESIEALIQNFDLDAEAEELRDIINNGKGQKKMRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ+SGN P GMVL+A+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+I+L
Sbjct: 301  AFQRSGNDPAGMVLNAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIEL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVI+VGPQL+LH+CGLPKLMALELFKPFVMKRLV+  +AQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIIVGPQLRLHECGLPKLMALELFKPFVMKRLVENEYAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P+VWDVLEE I+EHPV+LNRAPTLHRLGIQAFEP+LVEGKAIQLHPL CEAFNADFDGDQ
Sbjct: 481  PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVE----GDK 596
            MAVHLPLSAEAQAEAR+LML+SNNILSPASG+PLAMPRLDMVTGLYYLT E      G +
Sbjct: 541  MAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYYLTLEKSSEEFGGQ 600

Query: 597  GAYQPAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGW 656
            GAYQPA ++ PE GVYSS AEAIMA DRGVL ++A +++RL  LRPPAE+E   F  +GW
Sbjct: 601  GAYQPADENGPEKGVYSSLAEAIMAYDRGVLGLQAPVRIRLNHLRPPAEVEAEQF-PDGW 659

Query: 657  QPGDAWTAETTLGRVLFNELLPLGYAFVNKQMHKK-------VQAAIINDLAERYPMIVV 709
              G+ W A TTLGRV+FNE+LP  Y ++   M +K       +   ++NDLA +YPMI V
Sbjct: 660  NQGETWLAHTTLGRVMFNEILPWNYPYLEGVMVRKGGGSDKIMLGDVVNDLAAKYPMITV 719

Query: 710  AQTVDKLKDSGFYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDE 769
            AQT+DK+KD+GFYW+TRSGVT++M+DVLV P K+E+LD YEE A ++E ++ RG L   E
Sbjct: 720  AQTMDKMKDAGFYWSTRSGVTIAMSDVLVLPNKEEMLDRYEESARQIEVKYNRGKLTGRE 779

Query: 770  RNEALVEIWKEATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKG 829
            R + LVE+WK+ATDEVGQA+ + YP DNPI  IV SGA GN  Q  TLAGMKG+V N KG
Sbjct: 780  RYDRLVELWKDATDEVGQAVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG 839

Query: 830  EFIPRPIKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREH 889
            ++I RPIK+SFREGLTVLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVR  
Sbjct: 840  DYITRPIKTSFREGLTVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRVE 899

Query: 890  DCQTERGIMVELAERQGDGT-----LIRDPYIETSAYARTLGADAVDEAGNVVVARGEDL 944
            DC T +G+ V +A    D T       R   IETS   R L  DA + AG VV+A G DL
Sbjct: 900  DCGTRQGVRVPVAAEVLDATGAVTGYTRHDLIETSVSGRVLAGDATNAAGEVVLAAGTDL 959

Query: 945  GDPEIEACLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIG 1004
             +  I+  + AGI  VKVRSVL              +SMA+G+ VDIGEAVGIVAAQSIG
Sbjct: 960  TELNIDLLVEAGIKDVKVRSVLTCQTPTGVCAKCYGKSMASGQQVDIGEAVGIVAAQSIG 1019

Query: 1005 EPGTQLTMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKI 1064
            EPGTQLTMRTFHQGGVG DITGGLPRVQELFEARVP+  APIA V G + LED   FY +
Sbjct: 1020 EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNCAPIASVEGVIHLEDEGNFYTL 1079

Query: 1065 TIVPDDGGEEVVYDKLSKRQRL---RVFKHEDGS---ERVLSDGDHVEVGQQLMEGSADP 1118
            TIVPDDG + VVY+KLSKRQ L   RV    +     ER L++GD V VGQ+L+ G+ADP
Sbjct: 1080 TIVPDDGSDNVVYEKLSKRQGLASTRVAMESNAGAFIERTLTEGDRVTVGQRLLRGAADP 1139

Query: 1119 HEVLRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPG 1178
            H+VL + G R V+ HL+ EVQ VYRAQGV+IHDKHIE+I+RQMLRR T+I+SG+TEFLPG
Sbjct: 1140 HDVLEILGRRGVEQHLIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPG 1199

Query: 1179 SLIDRAEFEAENRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAI 1238
            SL+D +E +  N   +   G+PA  R  +MGITKASLAT+SWLSAASFQETTRVLTDAAI
Sbjct: 1200 SLVDLSEAKLANSEAIGAGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAI 1259

Query: 1239 NCRSDKLNGLKENVIIGKLIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-F 1297
            N RSDKL GLKENVIIGKLIPAGTGI+RYRNI+++PTE AR AAY+IP+Y +  Y  D F
Sbjct: 1260 NKRSDKLIGLKENVIIGKLIPAGTGISRYRNISIKPTEAARNAAYSIPTYGESIYGDDGF 1319

Query: 1298 GQATGAAVPLDD 1309
            G+ TGA+VPLD+
Sbjct: 1320 GEFTGASVPLDE 1331


>sp|A4QBG3|RPOC_CORGB Tax_Id=340322 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit
            beta';[Corynebacterium glutamicum]
          Length = 1333

 Score = 1805 bits (4676), Expect = 0.0
 Identities = 924/1332 (69%), Positives = 1070/1332 (80%), Gaps = 24/1332 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVN FDELRIGLATA+DIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC
Sbjct: 1    MLDVNVFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
             CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 61   ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDL+ IIYF A +ITSVD E RH++ +TLEAEM++E+K VE   ++D+  R       
Sbjct: 121  APKDLDLIIYFGANIITSVDEEARHSDQTTLEAEMLLEKKDVEADAESDIAERAEKLEED 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKV+ + ++EM+ +R+RAQRE+DRL+++W TF KLAPKQ+I DE L
Sbjct: 181  LAELEAAGAKADARRKVQAAADKEMQHIRERAQREIDRLDEVWQTFIKLAPKQMIRDEKL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            Y EL DRY +YFTG MGAESI+ LI+ FD+DAEAE LRD+I NGKGQ             
Sbjct: 241  YDELIDRYEDYFTGGMGAESIEALIQNFDLDAEAEELRDIINNGKGQKKMRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             FQ+SGN P GMVL+A+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+I+L
Sbjct: 301  AFQRSGNDPAGMVLNAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIEL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVI+VGPQL+LH+CGLPKLMALELFKPFVMKRLV+  +AQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIIVGPQLRLHECGLPKLMALELFKPFVMKRLVENEYAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P+VWDVLEE I+EHPV+LNRAPTLHRLGIQAFEP+LVEGKAIQLHPL CEAFNADFDGDQ
Sbjct: 481  PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVE----GDK 596
            MAVHLPLSAEAQAEAR+LML+SNNILSPASG+PLAMPRLDMVTGLYYLT E      G +
Sbjct: 541  MAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYYLTLEKSSEEFGGQ 600

Query: 597  GAYQPAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGW 656
            GAYQPA ++ PE GVYSS AEAIMA DRGVL ++A +++RL  LRPPAE+E   F  +GW
Sbjct: 601  GAYQPADENGPEKGVYSSLAEAIMAYDRGVLGLQAPVRIRLNHLRPPAEVEAEQF-PDGW 659

Query: 657  QPGDAWTAETTLGRVLFNELLPLGYAFVNKQMHKK-------VQAAIINDLAERYPMIVV 709
              G+ W A TTLGRV+FNE+LP  Y ++   M +K       +   ++NDLA +YPMI V
Sbjct: 660  NQGETWLAHTTLGRVMFNEILPWNYPYLEGIMVRKGGGSDKIMLGDVVNDLAAKYPMITV 719

Query: 710  AQTVDKLKDSGFYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDE 769
            AQT+DK+KD+GFYW+TRSGVT++M+DVLV P K+E+LD YEE A ++E ++ RG L   E
Sbjct: 720  AQTMDKMKDAGFYWSTRSGVTIAMSDVLVLPNKEEMLDRYEESARQIEVKYNRGKLTGRE 779

Query: 770  RNEALVEIWKEATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKG 829
            R + LVE+WK+ATDEVGQA+ + YP DNPI  IV SGA GN  Q  TLAGMKG+V N KG
Sbjct: 780  RYDRLVELWKDATDEVGQAVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKG 839

Query: 830  EFIPRPIKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREH 889
            ++I RPIK+SFREGLTVLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVR  
Sbjct: 840  DYITRPIKTSFREGLTVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRVE 899

Query: 890  DCQTERGIMVELAERQGDGT-----LIRDPYIETSAYARTLGADAVDEAGNVVVARGEDL 944
            DC T +G+ V +A    D T       R   IETS   R L  DA + AG VV+A G DL
Sbjct: 900  DCGTRQGVRVPVAAEVLDATGAVTGYTRHDLIETSVSGRVLAGDATNAAGEVVLAAGTDL 959

Query: 945  GDPEIEACLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIG 1004
             +  I+  + AGI  VKVRSVL              +SMA+G+ VDIGEAVGIVAAQSIG
Sbjct: 960  TELNIDLLVEAGIKDVKVRSVLTCQTPTGVCAKCYGKSMASGQQVDIGEAVGIVAAQSIG 1019

Query: 1005 EPGTQLTMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKI 1064
            EPGTQLTMRTFHQGGVG DITGGLPRVQELFEARVP+  APIA V G + LED   FY +
Sbjct: 1020 EPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNCAPIASVEGVIHLEDEGNFYTL 1079

Query: 1065 TIVPDDGGEEVVYDKLSKRQRL---RVFKHEDGS---ERVLSDGDHVEVGQQLMEGSADP 1118
            TIVPDDG + VVY+KLSKRQ L   RV    +     ER L++GD V VGQ+L+ G+ADP
Sbjct: 1080 TIVPDDGSDNVVYEKLSKRQGLASTRVAMESNAGAFIERTLTEGDRVTVGQRLLRGAADP 1139

Query: 1119 HEVLRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPG 1178
            H+VL + G R V+ HL+ EVQ VYRAQGV+IHDKHIE+I+RQMLRR T+I+SG+TEFLPG
Sbjct: 1140 HDVLEILGRRGVEQHLIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPG 1199

Query: 1179 SLIDRAEFEAENRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAI 1238
            SL+D +E +  N   +   G+PA  R  +MGITKASLAT+SWLSAASFQETTRVLTDAAI
Sbjct: 1200 SLVDLSEAKLANSEAIGAGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAI 1259

Query: 1239 NCRSDKLNGLKENVIIGKLIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-F 1297
            N RSDKL GLKENVIIGKLIPAGTGI+RYRNI+++PTE AR AAY+IP+Y +  Y  D F
Sbjct: 1260 NKRSDKLIGLKENVIIGKLIPAGTGISRYRNISIKPTEAARNAAYSIPTYGESIYGDDGF 1319

Query: 1298 GQATGAAVPLDD 1309
            G+ TGA+VPLD+
Sbjct: 1320 GEFTGASVPLDE 1331


>sp|A8M538|RPOC_SALAI Tax_Id=391037 (rpoC)RecName: Full=DNA-directed
            RNA polymerase subunit beta'; Short=RNAP subunit beta';
            EC=2.7.7.6; AltName: Full=Transcriptase subunit beta';
            AltName: Full=RNA polymerase subunit beta';[Salinispora
            arenicola]
          Length = 1297

 Score = 1804 bits (4672), Expect = 0.0
 Identities = 912/1323 (68%), Positives = 1063/1323 (80%), Gaps = 33/1323 (2%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            +LDVNFFDELRIGLATA+DIRQWS+GEVKKPETINYRTLKPEKDGLFCEKIFGP RDWEC
Sbjct: 1    MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPQRDWEC 60

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
            YCGKYKRVRFKGIICERCGVEVTR+KVRRERMGHIELAA VTHIWYFKGVPSRLGYLLDL
Sbjct: 61   YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAASVTHIWYFKGVPSRLGYLLDL 120

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLEKIIYFA+YV+TSVD E RH +L+T+E E++ E++  E+ RD+++E R       
Sbjct: 121  APKDLEKIIYFASYVVTSVDAEARHRDLATIENEILAEKRQSENSRDSEIEKRAGKLEAD 180

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKV++ GEREMRQ+RDRAQRE+DRL+++  TF KL PKQL+ DE L
Sbjct: 181  LAELEAEGAKADVRRKVKEGGEREMRQIRDRAQREIDRLDEVLDTFRKLEPKQLVTDELL 240

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            YREL+DR+GEYFTG MGAE+I+ L++  D+DAEAE LR+ IR GKGQ             
Sbjct: 241  YRELRDRFGEYFTGGMGAEAIKALVQNMDLDAEAESLRETIRTGKGQRKIRALKRLKVVA 300

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             F  + NSP+GMVLD VPVIPP+LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
Sbjct: 301  AFLNTRNSPLGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQE+VDALFDNGRRGRPVTGPGNRPLKSLSD+LKGKQGRFRQNLLGK
Sbjct: 361  GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK 420

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVIVVGP+LKLHQCGLPK MALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
Sbjct: 421  RVDYSGRSVIVVGPKLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P VWDVLEEVI EHPVLLNRAPTLHRLGIQAFEP LVEGKAIQ+HPLVC AFNADFDGDQ
Sbjct: 481  PVVWDVLEEVIGEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ 540

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ 600
            MAVH+PLSAEAQAEARILMLSSNNIL PA G+P+ MP  DM+ GLY+LT    G++G   
Sbjct: 541  MAVHVPLSAEAQAEARILMLSSNNILKPADGKPVTMPTQDMIIGLYHLTHRTSGERG--- 597

Query: 601  PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRL-----TQLRPPAEIEDALFGHNG 655
                   E   +SS AEA MA D G L ++A +K+RL      +  P AE   A     G
Sbjct: 598  -------EGRAFSSDAEARMAFDNGELHLQAPVKIRLRGLVGVETGPGAESWTA---PEG 647

Query: 656  WQPGDAWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDK 715
            W  GD  T ETTLGRVLFNE LP GY FVN ++ K   +AI+NDLAER+P + +A T+D 
Sbjct: 648  WVEGDPITVETTLGRVLFNEALPPGYRFVNYEIRKGQLSAIVNDLAERFPKVALAATLDG 707

Query: 716  LKDSGFYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALV 775
            LK++GF+WAT SGVT+ M DVL PPRK+E+LD YE+ A++++KQ+QRG +  +ER   L+
Sbjct: 708  LKEAGFHWATWSGVTIGMEDVLAPPRKREVLDRYEKEADRIDKQYQRGLMTAEERRGELI 767

Query: 776  EIWKEATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRP 835
            EIW +AT+EV + +    P +NP+  +++SGA GN  Q R +A ++GLV NPKGE IPRP
Sbjct: 768  EIWTKATNEVAKEMDTALPQENPLWKMINSGARGNLLQLRQIAAIRGLVANPKGEIIPRP 827

Query: 836  IKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTER 895
            IK+S+REGL+VLEYFI+THGARKGLADTALRTADSGYLTRRLVDVSQDVI+RE DC T+R
Sbjct: 828  IKASYREGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDR 887

Query: 896  GIMVELAERQGD-GTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLA 954
             I +++ ++ G+ G+L+   + ETS +ARTL  D     G VV  RG D+    ++  +A
Sbjct: 888  AIPMQVGQQTGEAGSLVVHEHAETSVHARTLADDIKGPDGTVVAERGADINSILVDRIVA 947

Query: 955  AGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRT 1014
            AG+  V+VRSVL              RS+ TGK VD+GEAVGI+AAQSIGEPGTQLTMRT
Sbjct: 948  AGVESVRVRSVLTCESKLGVCGACYGRSLPTGKTVDVGEAVGIIAAQSIGEPGTQLTMRT 1007

Query: 1015 FHQGGV-GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGE 1073
            FH GGV GEDIT GLPRVQE+FEAR+P+GKAPIAD  GRVRLEDGER  KI +VPDDG +
Sbjct: 1008 FHTGGVAGEDITQGLPRVQEIFEARIPKGKAPIADTPGRVRLEDGERSRKIIVVPDDGSD 1067

Query: 1074 EVVYDKLSKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIH 1133
            E+VYDK+SKR RL           + +DGDHVEVG++L  G+ DPHE+LR+ GPR VQ+H
Sbjct: 1068 EIVYDKISKRVRL-----------LANDGDHVEVGEKLTVGTIDPHELLRILGPRAVQVH 1116

Query: 1134 LVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRV 1193
            L +EVQEVYR+QGV IHDKHIE+I+RQML+RVT+IDSG+TEFLPG L+DRA FE+ENRR+
Sbjct: 1117 LTQEVQEVYRSQGVLIHDKHIEIIIRQMLKRVTVIDSGSTEFLPGVLVDRALFESENRRL 1176

Query: 1194 VAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVI 1253
            V+E GEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAI+ RSD L GLKENVI
Sbjct: 1177 VSEGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAIHARSDSLIGLKENVI 1236

Query: 1254 IGKLIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYS 1313
            IGKLIPAGTGI++YRN+ V+PTEEA+A  Y++  Y +  Y   FG A+G AVPLDD+ + 
Sbjct: 1237 IGKLIPAGTGISKYRNVRVEPTEEAKAKVYSMTGYPETDYG--FGPASGQAVPLDDFDFG 1294

Query: 1314 DYR 1316
             YR
Sbjct: 1295 SYR 1297


>tr|C2CPX2|C2CPX2_CORST Tax_Id=525268 (rpoC)RecName: Full=DNA-directed
            RNA polymerase; EC=2.7.7.6;[Corynebacterium striatum ATCC
            6940]
          Length = 1336

 Score = 1801 bits (4666), Expect = 0.0
 Identities = 924/1328 (69%), Positives = 1071/1328 (80%), Gaps = 21/1328 (1%)

Query: 1    VLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
            V DVN FDELRIGLATA+DIR+WS GEVKKPETINYRTLKPEKDGLFCE+IFGPTRDWEC
Sbjct: 7    VFDVNLFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC 66

Query: 61   YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 120
             CGKYKRVR+KGIICERCGVEVT++KVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
Sbjct: 67   ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL 126

Query: 121  APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARXXXXXXX 180
            APKDLE+IIYFAA +ITSVD E RHN+ STLEAEM++E+K VED  +A++  R       
Sbjct: 127  APKDLERIIYFAANIITSVDEEARHNDQSTLEAEMLLEKKDVEDDTEAEIAERAAKLEQD 186

Query: 181  XXXXXXXXXXXXXRRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL 240
                         RRKV+++ ++EM+ +R+R +RE+ RL++IW+TF KLAPKQ+I+DE +
Sbjct: 187  LAELEAAGAKADARRKVQNAADKEMQHIRERGEREVARLDEIWNTFLKLAPKQMIIDETI 246

Query: 241  YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQXXXXXXXXXXXXX 300
            Y EL DRY +YFTG MGAE+IQ LI +FD++AEAE L+++I NGKGQ             
Sbjct: 247  YEELIDRYEDYFTGGMGAEAIQTLIRSFDLEAEAEELKEIINNGKGQKKMRALKRLKVVA 306

Query: 301  XFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL 360
             F +SGN P GMVLDA+PVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR+IDL
Sbjct: 307  AFLRSGNDPAGMVLDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL 366

Query: 361  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 420
            GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
Sbjct: 367  GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK 426

Query: 421  RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR 480
            RVDYSGRSVI+VGPQLKLH+CGLPKLMALELFKPFVMKRLV+ ++AQNIKSAKRMVERQR
Sbjct: 427  RVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENDYAQNIKSAKRMVERQR 486

Query: 481  PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ 540
            P+VWDVLEE I+EHPV+LNRAPTLHRLGIQAFEP LVEGKAIQLHPL CEAFNADFDGDQ
Sbjct: 487  PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ 546

Query: 541  MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVE----GDK 596
            MAVHLPLSAEAQAEAR+LML+SNNILSPASG+PLAMPRLDMVTGLYYLT +      G +
Sbjct: 547  MAVHLPLSAEAQAEARVLMLASNNILSPASGKPLAMPRLDMVTGLYYLTMDKAESEIGGE 606

Query: 597  GAYQPAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGW 656
            G Y  A ++ P TGVYSS AEAIMA DRGVL ++A IKVR++ LRPPAE+E   F  +GW
Sbjct: 607  GRYTEATENGPATGVYSSYAEAIMARDRGVLGLQAPIKVRISHLRPPAEVEAEQF-PDGW 665

Query: 657  QPGDAWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAA-------IINDLAERYPMIVV 709
            Q G AW AETTLGR++FN+LLP  Y ++   M +K  A        +INDLA +YPMI V
Sbjct: 666  QKGQAWMAETTLGRIMFNDLLPWNYPYLEGVMVRKGGAKNSVLLGDVINDLAAKYPMITV 725

Query: 710  AQTVDKLKDSGFYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQF-QRGALNHD 768
            AQ +DK+KD+GFYWATRSGVT++M DVLV P K E+L+SYE+ A+++E+++ ++GAL   
Sbjct: 726  AQVLDKMKDAGFYWATRSGVTITMDDVLVLPNKTEVLESYEKEAQRIERKYWEQGALTER 785

Query: 769  ERNEALVEIWKEATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPK 828
            ER + LVE+WK+ATD VG+A+ + YP DNPI  IV SGA GN  Q  TLAGMKG+V N K
Sbjct: 786  ERYDRLVELWKDATDTVGKAVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSK 845

Query: 829  GEFIPRPIKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRE 888
            G++I RPIK+SFREGL+VLEYF N+HG+RKGLADTALRTADSGYLTRRLVDV+QDVIVRE
Sbjct: 846  GDYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRE 905

Query: 889  HDCQTERGIMVELAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPE 948
             DC T +G+ V L E   +GT + D   ETSA  R + +D   E G VV   G DL +  
Sbjct: 906  EDCGTRQGVRVPLGELV-NGTPVFDELWETSASGRVVASDVKAEDGTVVAEAGSDLTEAL 964

Query: 949  IEACLAAGITQVKVRSVLXXXXXXXXXXXXXXRSMATGKLVDIGEAVGIVAAQSIGEPGT 1008
                L AG+T++KVRSVL              +SMA+GKLVDIGEAVGIVAAQSIGEPGT
Sbjct: 965  TAEILRAGVTEIKVRSVLTCQTPAGVCAKCYGKSMASGKLVDIGEAVGIVAAQSIGEPGT 1024

Query: 1009 QLTMRTFHQGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVP 1068
            QLTMRTFHQGGVG DITGGLPRVQELFEAR P+ +APIA V G V L D   F+ +TI P
Sbjct: 1025 QLTMRTFHQGGVGGDITGGLPRVQELFEARNPKNRAPIASVDGTVSLSDEGNFWTLTITP 1084

Query: 1069 DDGGEEVVYDKLSKRQRLRVFKHEDGS------ERVLSDGDHVEVGQQLMEGSADPHEVL 1122
            DDG + VVY+KLSKRQ L   +    S      ER L DGDHV  G++LM G+ADPH+VL
Sbjct: 1085 DDGSDNVVYEKLSKRQGLAQVRRPMESNPDAMIERSLRDGDHVTTGERLMRGAADPHDVL 1144

Query: 1123 RVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLID 1182
             V G R V+ HL+ EVQ VYRAQGV+IHDKHIE+I+RQMLRR T+IDSG+T++LPG L+D
Sbjct: 1145 EVLGRRGVEKHLIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIDSGSTDYLPGVLVD 1204

Query: 1183 RAEFEAENRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRS 1242
             +E +  N   VAE GEPA  R  +MGITKASLAT+SWLSAASFQETTRVLTDAAIN RS
Sbjct: 1205 LSEAKQINAAQVAEGGEPAQLRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRS 1264

Query: 1243 DKLNGLKENVIIGKLIPAGTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPD-FGQAT 1301
            D+L GLKENVIIGKLIPAGTGI+RYRNI+V+PTE AR AAY+IP+Y D  Y  D FG+ T
Sbjct: 1265 DQLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNAAYSIPTYGDSIYGDDGFGEFT 1324

Query: 1302 GAAVPLDD 1309
            GA+VPLD+
Sbjct: 1325 GASVPLDE 1332


  Database: Amellifera_nr
    Posted date:  Feb 5, 2010  5:10 AM
  Number of letters in database: 3,846,993,858
  Number of sequences in database:  11,275,203
  
Lambda     K      H
   0.318    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11275203
Number of Hits to DB: 9,432,883,406
Number of extensions: 403023382
Number of successful extensions: 1048054
Number of sequences better than 10.0: 8959
Number of HSP's gapped: 1034310
Number of HSP's successfully gapped: 15563
Length of query: 1316
Length of database: 3,846,993,858
Length adjustment: 150
Effective length of query: 1166
Effective length of database: 2,155,713,408
Effective search space: 2513561833728
Effective search space used: 2513561833728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 87 (38.1 bits)