BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MMAR_1053
         (72 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,275,203 sequences; 3,846,993,858 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

sp|A0PM83|RL30_MYCUA Tax_Id=362242 (rpmD)RecName: Full=50S ribos...   142   9e-33
sp|B2HCT9|RL30_MYCMM Tax_Id=216594 (rpmD)RecName: Full=50S ribos...   142   9e-33
sp|P66181|RL30_MYCTU Tax_Id=1773 (rpmD)RecName: Full=50S ribosom...   113   8e-24
sp|A5U0A8|RL30_MYCTA Tax_Id=419947 (rpmD)RecName: Full=50S ribos...   113   8e-24
sp|C1AL56|RL30_MYCBT Tax_Id=561275 (rpmD)RecName: Full=50S ribos...   113   8e-24
sp|A1KGK3|RL30_MYCBP Tax_Id=410289 (rpmD)RecName: Full=50S ribos...   113   8e-24
sp|P66182|RL30_MYCBO Tax_Id=1765 (rpmD)RecName: Full=50S ribosom...   113   8e-24
tr|C6DUN7|C6DUN7_MYCTK Tax_Id=478434 SubName: Full=50S ribosomal...   113   8e-24
tr|A5WK90|A5WK90_MYCTF Tax_Id=336982 SubName: Full=50S ribosomal...   113   8e-24
tr|A4KF42|A4KF42_MYCTU Tax_Id=395095 SubName: Full=50S ribosomal...   113   8e-24
tr|A2VG30|A2VG30_MYCTU Tax_Id=348776 SubName: Full=50S ribosomal...   113   8e-24
sp|O33001|RL30_MYCLE Tax_Id=1769 (rpmD)RecName: Full=50S ribosom...   106   7e-22
sp|B8ZSA1|RL30_MYCLB Tax_Id=561304 (rpmD)RecName: Full=50S ribos...   106   7e-22
sp|Q73S91|RL30_MYCPA Tax_Id=1770 (rpmD)RecName: Full=50S ribosom...   106   1e-21
sp|A0QKZ4|RL30_MYCA1 Tax_Id=243243 (rpmD)RecName: Full=50S ribos...   106   1e-21
sp|A4TED3|RL30_MYCGI Tax_Id=350054 (rpmD)RecName: Full=50S ribos...    95   2e-18
sp|B1MGC4|RL30_MYCA9 Tax_Id=561007 (rpmD)RecName: Full=50S ribos...    94   5e-18
sp|A0QSG7|RL30_MYCS2 Tax_Id=246196 (rpmD)RecName: Full=50S ribos...    94   7e-18
sp|A1T4S4|RL30_MYCVP Tax_Id=350058 (rpmD)RecName: Full=50S ribos...    93   1e-17
sp|A3PVE3|RL30_MYCSJ Tax_Id=164757 (rpmD)RecName: Full=50S ribos...    89   2e-16
sp|Q1BD87|RL30_MYCSS Tax_Id=164756 (rpmD)RecName: Full=50S ribos...    87   8e-16
sp|A1UBQ6|RL30_MYCSK Tax_Id=189918 (rpmD)RecName: Full=50S ribos...    87   8e-16
sp|Q0S3F8|RL30_RHOSR Tax_Id=101510 (rpmD)RecName: Full=50S ribos...    79   1e-13
sp|C1B030|RL30_RHOOB Tax_Id=632772 (rpmD)RecName: Full=50S ribos...    79   1e-13
tr|C6WM09|C6WM09_ACTMD Tax_Id=446462 SubName: Full=Ribosomal pro...    77   6e-13
sp|Q5Z1Q4|RL30_NOCFA Tax_Id=37329 (rpmD)RecName: Full=50S riboso...    76   1e-12
sp|C0ZW44|RL30_RHOE4 Tax_Id=234621 (rpmD)RecName: Full=50S ribos...    76   1e-12
tr|C3JH07|C3JH07_RHOER Tax_Id=596309 (rpmD)SubName: Full=Ribosom...    76   1e-12
tr|C2AM04|C2AM04_TSUPA Tax_Id=521096 SubName: Full=LSU ribosomal...    74   4e-12
sp|C4LL08|RL30_CORK4 Tax_Id=645127 (rpmD)RecName: Full=50S ribos...    74   7e-12
tr|C0W6E5|C0W6E5_9ACTO Tax_Id=525246 SubName: Full=Ribosomal pro...    74   7e-12
tr|C7MTW5|C7MTW5_SACVD Tax_Id=471857 SubName: Full=LSU ribosomal...    73   1e-11
sp|Q8NSX3|RL30_CORGL Tax_Id=1718 (rpmD)RecName: Full=50S ribosom...    72   3e-11
sp|A4QBL5|RL30_CORGB Tax_Id=340322 (rpmD)RecName: Full=50S ribos...    70   6e-11
sp|Q8FS51|RL30_COREF Tax_Id=152794 (rpmD)RecName: Full=50S ribos...    70   1e-10
tr|C8RUK2|C8RUK2_CORJE Tax_Id=525262 (rpmD)SubName: Full=Conserv...    69   2e-10
tr|D0L2G9|D0L2G9_GORB4 Tax_Id=526226 SubName: Full=Ribosomal pro...    68   3e-10
sp|B1VEX3|RL30_CORU7 Tax_Id=504474 (rpmD)RecName: Full=50S ribos...    67   5e-10
sp|Q4JT87|RL30_CORJK Tax_Id=306537 (rpmD)RecName: Full=50S ribos...    67   5e-10
sp|Q1AU47|RL30_RUBXD Tax_Id=266117 (rpmD)RecName: Full=50S ribos...    67   9e-10
sp|A4FPK7|RL30_SACEN Tax_Id=405948 (rpmD)RecName: Full=50S ribos...    66   1e-09
sp|A4XBM8|RL30_SALTO Tax_Id=369723 (rpmD)RecName: Full=50S ribos...    66   1e-09
sp|A9WSU0|RL30_RENSM Tax_Id=288705 (rpmD)RecName: Full=50S ribos...    66   1e-09
sp|A0LRN8|RL30_ACIC1 Tax_Id=351607 (rpmD)RecName: Full=50S ribos...    66   1e-09
tr|D0WPB2|D0WPB2_9ACTO Tax_Id=649743 SubName: Full=Ribosomal pro...    66   1e-09
tr|C4RAW0|C4RAW0_9ACTO Tax_Id=219305 SubName: Full=50S ribosomal...    66   1e-09
tr|C4ECU5|C4ECU5_STRRS Tax_Id=479432 SubName: Full=LSU ribosomal...    66   1e-09
sp|A8M511|RL30_SALAI Tax_Id=391037 (rpmD)RecName: Full=50S ribos...    65   2e-09
sp|B0RB56|RL30_CLAMS Tax_Id=31964 (rpmD)RecName: Full=50S riboso...    65   2e-09
tr|C7R0W2|C7R0W2_JONDD Tax_Id=471856 SubName: Full=Ribosomal pro...    65   2e-09

>sp|A0PM83|RL30_MYCUA Tax_Id=362242 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium ulcerans]
          Length = 72

 Score =  142 bits (359), Expect = 9e-33
 Identities = 72/72 (100%), Positives = 72/72 (100%)

Query: 1  MSEATNQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEV 60
          MSEATNQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEV
Sbjct: 1  MSEATNQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEV 60

Query: 61 EPAQNGTGGKAQ 72
          EPAQNGTGGKAQ
Sbjct: 61 EPAQNGTGGKAQ 72


>sp|B2HCT9|RL30_MYCMM Tax_Id=216594 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium marinum]
          Length = 72

 Score =  142 bits (359), Expect = 9e-33
 Identities = 72/72 (100%), Positives = 72/72 (100%)

Query: 1  MSEATNQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEV 60
          MSEATNQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEV
Sbjct: 1  MSEATNQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEV 60

Query: 61 EPAQNGTGGKAQ 72
          EPAQNGTGGKAQ
Sbjct: 61 EPAQNGTGGKAQ 72


>sp|P66181|RL30_MYCTU Tax_Id=1773 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium tuberculosis]
          Length = 65

 Score =  113 bits (282), Expect = 8e-24
 Identities = 58/65 (89%), Positives = 62/65 (95%), Gaps = 2/65 (3%)

Query: 6  NQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPAQN 65
          +QLKITQVRSTIGARWKQRESLRTLGLRRIRH+V+R+DNA TRGLIAVVRHLVEVEPAQ 
Sbjct: 2  SQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVEPAQ- 60

Query: 66 GTGGK 70
           TGGK
Sbjct: 61 -TGGK 64


>sp|A5U0A8|RL30_MYCTA Tax_Id=419947 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium tuberculosis]
          Length = 65

 Score =  113 bits (282), Expect = 8e-24
 Identities = 58/65 (89%), Positives = 62/65 (95%), Gaps = 2/65 (3%)

Query: 6  NQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPAQN 65
          +QLKITQVRSTIGARWKQRESLRTLGLRRIRH+V+R+DNA TRGLIAVVRHLVEVEPAQ 
Sbjct: 2  SQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVEPAQ- 60

Query: 66 GTGGK 70
           TGGK
Sbjct: 61 -TGGK 64


>sp|C1AL56|RL30_MYCBT Tax_Id=561275 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium bovis]
          Length = 65

 Score =  113 bits (282), Expect = 8e-24
 Identities = 58/65 (89%), Positives = 62/65 (95%), Gaps = 2/65 (3%)

Query: 6  NQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPAQN 65
          +QLKITQVRSTIGARWKQRESLRTLGLRRIRH+V+R+DNA TRGLIAVVRHLVEVEPAQ 
Sbjct: 2  SQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVEPAQ- 60

Query: 66 GTGGK 70
           TGGK
Sbjct: 61 -TGGK 64


>sp|A1KGK3|RL30_MYCBP Tax_Id=410289 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium bovis]
          Length = 65

 Score =  113 bits (282), Expect = 8e-24
 Identities = 58/65 (89%), Positives = 62/65 (95%), Gaps = 2/65 (3%)

Query: 6  NQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPAQN 65
          +QLKITQVRSTIGARWKQRESLRTLGLRRIRH+V+R+DNA TRGLIAVVRHLVEVEPAQ 
Sbjct: 2  SQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVEPAQ- 60

Query: 66 GTGGK 70
           TGGK
Sbjct: 61 -TGGK 64


>sp|P66182|RL30_MYCBO Tax_Id=1765 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium bovis]
          Length = 65

 Score =  113 bits (282), Expect = 8e-24
 Identities = 58/65 (89%), Positives = 62/65 (95%), Gaps = 2/65 (3%)

Query: 6  NQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPAQN 65
          +QLKITQVRSTIGARWKQRESLRTLGLRRIRH+V+R+DNA TRGLIAVVRHLVEVEPAQ 
Sbjct: 2  SQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVEPAQ- 60

Query: 66 GTGGK 70
           TGGK
Sbjct: 61 -TGGK 64


>tr|C6DUN7|C6DUN7_MYCTK Tax_Id=478434 SubName: Full=50S ribosomal
          protein L30 rpmD;[Mycobacterium tuberculosis]
          Length = 65

 Score =  113 bits (282), Expect = 8e-24
 Identities = 58/65 (89%), Positives = 62/65 (95%), Gaps = 2/65 (3%)

Query: 6  NQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPAQN 65
          +QLKITQVRSTIGARWKQRESLRTLGLRRIRH+V+R+DNA TRGLIAVVRHLVEVEPAQ 
Sbjct: 2  SQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVEPAQ- 60

Query: 66 GTGGK 70
           TGGK
Sbjct: 61 -TGGK 64


>tr|A5WK90|A5WK90_MYCTF Tax_Id=336982 SubName: Full=50S ribosomal
          protein L30 rpmD;[Mycobacterium tuberculosis]
          Length = 65

 Score =  113 bits (282), Expect = 8e-24
 Identities = 58/65 (89%), Positives = 62/65 (95%), Gaps = 2/65 (3%)

Query: 6  NQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPAQN 65
          +QLKITQVRSTIGARWKQRESLRTLGLRRIRH+V+R+DNA TRGLIAVVRHLVEVEPAQ 
Sbjct: 2  SQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVEPAQ- 60

Query: 66 GTGGK 70
           TGGK
Sbjct: 61 -TGGK 64


>tr|A4KF42|A4KF42_MYCTU Tax_Id=395095 SubName: Full=50S ribosomal
          protein L30 rpmD;[Mycobacterium tuberculosis str.
          Haarlem]
          Length = 65

 Score =  113 bits (282), Expect = 8e-24
 Identities = 58/65 (89%), Positives = 62/65 (95%), Gaps = 2/65 (3%)

Query: 6  NQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPAQN 65
          +QLKITQVRSTIGARWKQRESLRTLGLRRIRH+V+R+DNA TRGLIAVVRHLVEVEPAQ 
Sbjct: 2  SQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVEPAQ- 60

Query: 66 GTGGK 70
           TGGK
Sbjct: 61 -TGGK 64


>tr|A2VG30|A2VG30_MYCTU Tax_Id=348776 SubName: Full=50S ribosomal
          protein L30 rpmD;[Mycobacterium tuberculosis C]
          Length = 65

 Score =  113 bits (282), Expect = 8e-24
 Identities = 58/65 (89%), Positives = 62/65 (95%), Gaps = 2/65 (3%)

Query: 6  NQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPAQN 65
          +QLKITQVRSTIGARWKQRESLRTLGLRRIRH+V+R+DNA TRGLIAVVRHLVEVEPAQ 
Sbjct: 2  SQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNAATRGLIAVVRHLVEVEPAQ- 60

Query: 66 GTGGK 70
           TGGK
Sbjct: 61 -TGGK 64


>sp|O33001|RL30_MYCLE Tax_Id=1769 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium leprae]
          Length = 71

 Score =  106 bits (265), Expect = 7e-22
 Identities = 52/60 (86%), Positives = 56/60 (93%)

Query: 8  LKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPAQNGT 67
          LKITQVRSTIG RWKQRESLRTLGLRRIRH+V+R+DN QTRGLIAVVRHLVEVEPA  G+
Sbjct: 4  LKITQVRSTIGVRWKQRESLRTLGLRRIRHSVIREDNLQTRGLIAVVRHLVEVEPATGGS 63


>sp|B8ZSA1|RL30_MYCLB Tax_Id=561304 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium leprae]
          Length = 71

 Score =  106 bits (265), Expect = 7e-22
 Identities = 52/60 (86%), Positives = 56/60 (93%)

Query: 8  LKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPAQNGT 67
          LKITQVRSTIG RWKQRESLRTLGLRRIRH+V+R+DN QTRGLIAVVRHLVEVEPA  G+
Sbjct: 4  LKITQVRSTIGVRWKQRESLRTLGLRRIRHSVIREDNLQTRGLIAVVRHLVEVEPATGGS 63


>sp|Q73S91|RL30_MYCPA Tax_Id=1770 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium paratuberculosis]
          Length = 71

 Score =  106 bits (264), Expect = 1e-21
 Identities = 55/67 (82%), Positives = 59/67 (88%), Gaps = 3/67 (4%)

Query: 6  NQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPA-- 63
          +QLKITQVRSTIGARWKQRESLRTLGLRRIRH+V+R+DN QTRGLIAVV HLVEV PA  
Sbjct: 2  SQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNPQTRGLIAVVSHLVEVAPADA 61

Query: 64 -QNGTGG 69
             GTGG
Sbjct: 62 SSAGTGG 68


>sp|A0QKZ4|RL30_MYCA1 Tax_Id=243243 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium avium]
          Length = 71

 Score =  106 bits (264), Expect = 1e-21
 Identities = 55/67 (82%), Positives = 59/67 (88%), Gaps = 3/67 (4%)

Query: 6  NQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPA-- 63
          +QLKITQVRSTIGARWKQRESLRTLGLRRIRH+V+R+DN QTRGLIAVV HLVEV PA  
Sbjct: 2  SQLKITQVRSTIGARWKQRESLRTLGLRRIRHSVIREDNPQTRGLIAVVSHLVEVAPADA 61

Query: 64 -QNGTGG 69
             GTGG
Sbjct: 62 SSAGTGG 68


>sp|A4TED3|RL30_MYCGI Tax_Id=350054 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium gilvum]
          Length = 61

 Score = 95.1 bits (235), Expect = 2e-18
 Identities = 47/55 (85%), Positives = 51/55 (92%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          +LKITQVRSTIGARWKQRESLRTLGLR+IR +VVR+DNAQTRGLI  V HLVEVE
Sbjct: 3  ELKITQVRSTIGARWKQRESLRTLGLRKIRQSVVREDNAQTRGLIKTVHHLVEVE 57


>sp|B1MGC4|RL30_MYCA9 Tax_Id=561007 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium abscessus]
          Length = 60

 Score = 94.0 bits (232), Expect = 5e-18
 Identities = 46/54 (85%), Positives = 51/54 (94%)

Query: 8  LKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          +KITQVRSTIGARWKQRESL+TLGLR+IR TVVR+DNAQTRGL+ VVRHLV VE
Sbjct: 4  VKITQVRSTIGARWKQRESLKTLGLRKIRQTVVREDNAQTRGLLQVVRHLVTVE 57


>sp|A0QSG7|RL30_MYCS2 Tax_Id=246196 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium smegmatis]
          Length = 61

 Score = 93.6 bits (231), Expect = 7e-18
 Identities = 46/55 (83%), Positives = 51/55 (92%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          +LKITQVRSTIGARWKQRESLRTLGL++IR +VVR+DNAQTRGLI  V HLVEVE
Sbjct: 3  ELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVE 57


>sp|A1T4S4|RL30_MYCVP Tax_Id=350058 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium vanbaalenii]
          Length = 59

 Score = 92.8 bits (229), Expect = 1e-17
 Identities = 46/55 (83%), Positives = 50/55 (90%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          +LKITQVRSTIGARWKQRESLRTLGLR+IR +VVR+DNAQTRGLI  V HLV VE
Sbjct: 3  ELKITQVRSTIGARWKQRESLRTLGLRKIRQSVVREDNAQTRGLIKTVHHLVTVE 57


>sp|A3PVE3|RL30_MYCSJ Tax_Id=164757 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium sp.]
          Length = 59

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 44/55 (80%), Positives = 48/55 (87%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          +LKITQVR TIGARW QRESLRTLGLR+IR +VVR+DNAQTRGLI  V HLV VE
Sbjct: 3  ELKITQVRGTIGARWNQRESLRTLGLRKIRQSVVREDNAQTRGLIKTVHHLVVVE 57


>sp|Q1BD87|RL30_MYCSS Tax_Id=164756 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium sp.]
          Length = 61

 Score = 86.7 bits (213), Expect = 8e-16
 Identities = 43/55 (78%), Positives = 47/55 (85%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          +LKI QVR TIGARW QRESLRTLGLR+IR +VVR+DNAQTRGLI  V HLV VE
Sbjct: 5  ELKIIQVRGTIGARWNQRESLRTLGLRKIRQSVVREDNAQTRGLIKTVHHLVVVE 59


>sp|A1UBQ6|RL30_MYCSK Tax_Id=189918 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Mycobacterium sp.]
          Length = 61

 Score = 86.7 bits (213), Expect = 8e-16
 Identities = 43/55 (78%), Positives = 47/55 (85%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          +LKI QVR TIGARW QRESLRTLGLR+IR +VVR+DNAQTRGLI  V HLV VE
Sbjct: 5  ELKIIQVRGTIGARWNQRESLRTLGLRKIRQSVVREDNAQTRGLIKTVHHLVVVE 59


>sp|Q0S3F8|RL30_RHOSR Tax_Id=101510 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Rhodococcus sp.]
          Length = 59

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 39/55 (70%), Positives = 46/55 (83%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          +LK+TQ++STIG +  QR SLRTLGL+ IR TVVR+DNAQ RGLI VVRHLV VE
Sbjct: 3  ELKVTQIKSTIGTKQNQRNSLRTLGLKGIRQTVVREDNAQNRGLINVVRHLVTVE 57


>sp|C1B030|RL30_RHOOB Tax_Id=632772 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Rhodococcus opacus]
          Length = 59

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 39/55 (70%), Positives = 46/55 (83%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          +LK+TQ++STIG +  QR SLRTLGL+ IR TVVR+DNAQ RGLI VVRHLV VE
Sbjct: 3  ELKVTQIKSTIGTKQNQRNSLRTLGLKGIRQTVVREDNAQNRGLINVVRHLVTVE 57


>tr|C6WM09|C6WM09_ACTMD Tax_Id=446462 SubName: Full=Ribosomal
          protein L30;[Actinosynnema mirum]
          Length = 61

 Score = 77.0 bits (188), Expect = 6e-13
 Identities = 38/59 (64%), Positives = 46/59 (77%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPAQN 65
          QLK+TQV+STIG +   RES+RTLGLR+IR +VVR+D  Q RGLI  VRHLV VE  Q+
Sbjct: 3  QLKVTQVKSTIGTKHNHRESMRTLGLRKIRQSVVREDTPQVRGLIHAVRHLVVVEEVQS 61


>sp|Q5Z1Q4|RL30_NOCFA Tax_Id=37329 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Nocardia farcinica]
          Length = 59

 Score = 76.3 bits (186), Expect = 1e-12
 Identities = 38/54 (70%), Positives = 46/54 (85%)

Query: 8  LKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          LK+TQ++S+IGA+  QR+SLRTLGLR IR +VVR+DN Q RGLI VVRHLV VE
Sbjct: 4  LKVTQIKSSIGAKKNQRDSLRTLGLRGIRKSVVREDNPQNRGLINVVRHLVTVE 57


>sp|C0ZW44|RL30_RHOE4 Tax_Id=234621 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Rhodococcus erythropolis]
          Length = 59

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 37/54 (68%), Positives = 45/54 (83%)

Query: 8  LKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          LK+TQ++S IG +  Q++SLRTLGL+ IR TVVR+DNAQ RGLI VVRHLV VE
Sbjct: 4  LKVTQIKSIIGTKQNQKDSLRTLGLKGIRQTVVREDNAQNRGLINVVRHLVTVE 57


>tr|C3JH07|C3JH07_RHOER Tax_Id=596309 (rpmD)SubName:
          Full=Ribosomal protein L30;[Rhodococcus erythropolis
          SK121]
          Length = 59

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 37/54 (68%), Positives = 45/54 (83%)

Query: 8  LKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          LK+TQ++S IG +  Q++SLRTLGL+ IR TVVR+DNAQ RGLI VVRHLV VE
Sbjct: 4  LKVTQIKSIIGTKQNQKDSLRTLGLKGIRQTVVREDNAQNRGLINVVRHLVTVE 57


>tr|C2AM04|C2AM04_TSUPA Tax_Id=521096 SubName: Full=LSU ribosomal
          protein L30P;[Tsukamurella paurometabola DSM 20162]
          Length = 59

 Score = 74.3 bits (181), Expect = 4e-12
 Identities = 38/55 (69%), Positives = 43/55 (78%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          Q KITQVR TIG +  QR+SLRTLGL+ IR +VVR+D  Q RGLI VV HLVEVE
Sbjct: 3  QFKITQVRGTIGTKQNQRDSLRTLGLKGIRKSVVREDTPQNRGLIQVVSHLVEVE 57


>sp|C4LL08|RL30_CORK4 Tax_Id=645127 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Corynebacterium kroppenstedtii]
          Length = 61

 Score = 73.6 bits (179), Expect = 7e-12
 Identities = 35/54 (64%), Positives = 45/54 (83%)

Query: 8  LKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          LKITQV+ T+G R KQ+++LR+LGL+RIRH+VV+ D  Q RG+I VVRHLV VE
Sbjct: 3  LKITQVKGTVGTRKKQKDNLRSLGLKRIRHSVVQPDTPQVRGMINVVRHLVTVE 56


>tr|C0W6E5|C0W6E5_9ACTO Tax_Id=525246 SubName: Full=Ribosomal
          protein L30;[Actinomyces urogenitalis DSM 15434]
          Length = 65

 Score = 73.6 bits (179), Expect = 7e-12
 Identities = 40/65 (61%), Positives = 49/65 (75%), Gaps = 2/65 (3%)

Query: 1  MSEATN--QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLV 58
          M+ AT   QLKITQVRS IG   +QRE+L++LGLR+IR +VVR+DN   RG+IA V HLV
Sbjct: 1  MASATENKQLKITQVRSGIGGTRRQRETLQSLGLRKIRQSVVREDNPSVRGMIATVAHLV 60

Query: 59 EVEPA 63
           VE A
Sbjct: 61 TVEEA 65


>tr|C7MTW5|C7MTW5_SACVD Tax_Id=471857 SubName: Full=LSU ribosomal
          protein L30P;[Saccharomonospora viridis]
          Length = 60

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 37/55 (67%), Positives = 42/55 (76%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          QLKITQ RSTIG +   R SLRTLGLR+IR +VVR+D  Q RGL+  VRHLV VE
Sbjct: 3  QLKITQTRSTIGTKQAHRASLRTLGLRKIRQSVVREDTPQVRGLLHAVRHLVTVE 57


>sp|Q8NSX3|RL30_CORGL Tax_Id=1718 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Corynebacterium glutamicum]
          Length = 61

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 32/54 (59%), Positives = 43/54 (79%)

Query: 8  LKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          LKITQ++ T+G + K RE+LR+LGL+RIRHTV+R D  + RG+I  VRHL+ VE
Sbjct: 3  LKITQIKGTVGTKPKHRENLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56


>sp|A4QBL5|RL30_CORGB Tax_Id=340322 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Corynebacterium glutamicum]
          Length = 61

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 31/54 (57%), Positives = 43/54 (79%)

Query: 8  LKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          LKITQ++ T+G + K R++LR+LGL+RIRHTV+R D  + RG+I  VRHL+ VE
Sbjct: 3  LKITQIKGTVGTKPKHRDNLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56


>sp|Q8FS51|RL30_COREF Tax_Id=152794 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Corynebacterium efficiens]
          Length = 61

 Score = 69.7 bits (169), Expect = 1e-10
 Identities = 32/54 (59%), Positives = 43/54 (79%)

Query: 8  LKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          LKITQV+ TIG + K R++LR+LGL+RIRH+VVR D  + RG++  VRHL+ VE
Sbjct: 3  LKITQVKGTIGTKPKHRDNLRSLGLKRIRHSVVRPDTPEVRGMVQAVRHLIVVE 56


>tr|C8RUK2|C8RUK2_CORJE Tax_Id=525262 (rpmD)SubName:
          Full=Conserved domain protein;[Corynebacterium jeikeium
          ATCC 43734]
          Length = 61

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 34/54 (62%), Positives = 43/54 (79%)

Query: 8  LKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          LKITQV+  +G + KQR+S+R+LGL+RI  TVVR+DN   RG I VVRH+VEVE
Sbjct: 3  LKITQVKGLVGTKPKQRDSMRSLGLKRIGQTVVREDNPIVRGQINVVRHMVEVE 56


>tr|D0L2G9|D0L2G9_GORB4 Tax_Id=526226 SubName: Full=Ribosomal
          protein L30;[Gordonia bronchialis]
          Length = 60

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 35/55 (63%), Positives = 42/55 (76%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          +LKITQV+ TIG +  QR+SLRTLGL+ IR +V R+D    RGLI VVRHLV VE
Sbjct: 3  ELKITQVKGTIGTKKNQRDSLRTLGLKGIRKSVTREDTPINRGLINVVRHLVTVE 57


>sp|B1VEX3|RL30_CORU7 Tax_Id=504474 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Corynebacterium urealyticum]
          Length = 61

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 30/54 (55%), Positives = 43/54 (79%)

Query: 8  LKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          LKI Q++ T+G +  QR++LR+LGL+RI   V+R+DN+ TRG++  VRHLVEVE
Sbjct: 3  LKIRQIKGTVGRKQNQRDTLRSLGLKRIGQEVIREDNSVTRGMVHTVRHLVEVE 56


>sp|Q4JT87|RL30_CORJK Tax_Id=306537 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Corynebacterium jeikeium]
          Length = 61

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 33/54 (61%), Positives = 42/54 (77%)

Query: 8  LKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          LKITQV+  +G + KQR+S+R+LGL+RI  TVVR+DN   RG I  VRH+VEVE
Sbjct: 3  LKITQVKGLVGTKPKQRDSMRSLGLKRIGQTVVREDNPIVRGQINTVRHMVEVE 56


>sp|Q1AU47|RL30_RUBXD Tax_Id=266117 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Rubrobacter xylanophilus]
          Length = 61

 Score = 66.6 bits (161), Expect = 9e-10
 Identities = 34/60 (56%), Positives = 44/60 (73%)

Query: 6  NQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPAQN 65
          +QL++TQVRSTIGA  K + ++R LGLRRIR + V  D  Q RG+IA VRHLV VE  ++
Sbjct: 2  SQLRVTQVRSTIGAIEKHKRTVRALGLRRIRDSRVHRDTPQIRGMIAKVRHLVRVEEVED 61


>sp|A4FPK7|RL30_SACEN Tax_Id=405948 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Saccharopolyspora erythraea]
          Length = 60

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 32/55 (58%), Positives = 41/55 (74%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          QLKITQ +  +GA+  Q++S+RTLGLR+IR +VVR D    RGL+ VV HLV VE
Sbjct: 3  QLKITQHKGLVGAKQNQKDSMRTLGLRKIRQSVVRPDTPDVRGLVNVVHHLVTVE 57


>sp|A4XBM8|RL30_SALTO Tax_Id=369723 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Salinispora tropica]
          Length = 60

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPAQ 64
          +LK+TQVRS IG +  QR+SLR+LGL+RI   VV++D  + RG+I  V HLV+VE  +
Sbjct: 3  RLKVTQVRSEIGTKQNQRDSLRSLGLKRINDVVVKEDRPEIRGMIFTVNHLVKVEEVE 60


>sp|A9WSU0|RL30_RENSM Tax_Id=288705 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Renibacterium salmoninarum]
          Length = 70

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 35/64 (54%), Positives = 49/64 (76%), Gaps = 2/64 (3%)

Query: 1  MSEATNQLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEV 60
          +SE T  L+ITQ++STIG +  QR++LR+LGL+RI HTVVR  +A T G+I  + HLV+V
Sbjct: 9  VSEKT--LEITQIKSTIGGKQNQRDTLRSLGLKRIGHTVVRKADAVTVGMINTIPHLVKV 66

Query: 61 EPAQ 64
          E A+
Sbjct: 67 EEAK 70


>sp|A0LRN8|RL30_ACIC1 Tax_Id=351607 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Acidothermus cellulolyticus]
          Length = 60

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 31/58 (53%), Positives = 44/58 (75%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPAQ 64
          +LK+TQVRS IG   +QR++LR+LGL+R+R TVV++D  + RG+I  V HLV VE  +
Sbjct: 3  RLKVTQVRSGIGGTAEQRDTLRSLGLKRLRDTVVKEDRPEIRGMIRAVAHLVRVEEVE 60


>tr|D0WPB2|D0WPB2_9ACTO Tax_Id=649743 SubName: Full=Ribosomal
          protein L30;[Actinomyces sp. oral taxon 848 str. F0332]
          Length = 60

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 33/55 (60%), Positives = 41/55 (74%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          QLKITQV+S IG R  Q+++LRTLGLRRI  +VVR+D  +  G I  V HLV+VE
Sbjct: 3  QLKITQVKSAIGGRQNQKDTLRTLGLRRIGQSVVREDRPEVLGAIRTVAHLVKVE 57


>tr|C4RAW0|C4RAW0_9ACTO Tax_Id=219305 SubName: Full=50S ribosomal
          protein L30;[Micromonospora sp. ATCC 39149]
          Length = 60

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPAQ 64
          +LK+TQVRS IG +  QR+SLR+LGL+RI   VV++D  + RG+I  V HLV+VE  +
Sbjct: 3  RLKVTQVRSEIGTKQNQRDSLRSLGLKRINDVVVKEDRPEIRGMIFAVNHLVKVEEVE 60


>tr|C4ECU5|C4ECU5_STRRS Tax_Id=479432 SubName: Full=LSU ribosomal
          protein L30P;[Streptosporangium roseum DSM 43021]
          Length = 60

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 32/55 (58%), Positives = 42/55 (76%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          +LKITQVRS IG +  QR+SLR+LGL+RI   VV++D  + RG++ VV HLV VE
Sbjct: 3  RLKITQVRSKIGGKQNQRDSLRSLGLKRIGDVVVKEDRPEIRGMVTVVTHLVTVE 57


>sp|A8M511|RL30_SALAI Tax_Id=391037 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Salinispora arenicola]
          Length = 60

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 31/58 (53%), Positives = 43/58 (74%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVEPAQ 64
          +LK+TQVRS IG +  QR+SLR+LGL+RI   VV++D  + RG+I  V HLV+VE  +
Sbjct: 3  RLKVTQVRSEIGTKRNQRDSLRSLGLKRINDVVVKEDRPEIRGMIFTVNHLVKVEEVE 60


>sp|B0RB56|RL30_CLAMS Tax_Id=31964 (rpmD)RecName: Full=50S
          ribosomal protein L30;[Clavibacter michiganensis subsp.
          sepedonicus]
          Length = 60

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 7  QLKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          QL++TQ++S I  +  QR++LR+LGLRRI   VVR+DNAQ RG +  V HLV+VE
Sbjct: 3  QLRVTQIKSKISEKQNQRDTLRSLGLRRIGAVVVREDNAQNRGYVNTVAHLVKVE 57


>tr|C7R0W2|C7R0W2_JONDD Tax_Id=471856 SubName: Full=Ribosomal
          protein L30;[Jonesia denitrificans]
          Length = 60

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 31/54 (57%), Positives = 41/54 (75%)

Query: 8  LKITQVRSTIGARWKQRESLRTLGLRRIRHTVVRDDNAQTRGLIAVVRHLVEVE 61
          LK+TQV+S IG +  QR++LRTLGL++I  + VR+D  + RGLIA V HLV VE
Sbjct: 4  LKVTQVKSAIGGKQNQRDTLRTLGLKKIGQSTVREDRPEVRGLIATVAHLVTVE 57


  Database: Amellifera_nr
    Posted date:  Feb 5, 2010  5:10 AM
  Number of letters in database: 3,846,993,858
  Number of sequences in database:  11,275,203
  
Lambda     K      H
   0.317    0.130    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11275203
Number of Hits to DB: 486,135,690
Number of extensions: 13699996
Number of successful extensions: 26270
Number of sequences better than 10.0: 1461
Number of HSP's gapped: 26344
Number of HSP's successfully gapped: 1461
Length of query: 72
Length of database: 3,846,993,858
Length adjustment: 43
Effective length of query: 29
Effective length of database: 3,362,160,129
Effective search space: 97502643741
Effective search space used: 97502643741
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)