BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MMAR_1073
         (177 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,275,203 sequences; 3,846,993,858 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|B2HCV7|B2HCV7_MYCMM Tax_Id=216594 (sigL)RecName: Full=RNA pol...   267   3e-70
tr|A0PMA0|A0PMA0_MYCUA Tax_Id=362242 (sigL)RecName: Full=RNA pol...   266   9e-70
tr|Q73S75|Q73S75_MYCPA Tax_Id=1770 (sigL)RecName: Full=RNA polym...   231   2e-59
tr|A0QKX8|A0QKX8_MYCA1 Tax_Id=243243 RecName: Full=RNA polymeras...   231   2e-59
tr|Q7D9D4|Q7D9D4_MYCTU Tax_Id=1773 (sigL)RecName: Full=RNA polym...   227   5e-58
tr|O53798|O53798_MYCBO Tax_Id=1765 (sigL)RecName: Full=RNA polym...   227   5e-58
tr|C6DUQ1|C6DUQ1_MYCTK Tax_Id=478434 RecName: Full=RNA polymeras...   227   5e-58
tr|C1AL69|C1AL69_MYCBT Tax_Id=561275 (sigL)RecName: Full=RNA pol...   227   5e-58
tr|A5U0C1|A5U0C1_MYCTA Tax_Id=419947 (sigL)RecName: Full=RNA pol...   227   5e-58
tr|A1KGL6|A1KGL6_MYCBP Tax_Id=410289 (sigL)RecName: Full=RNA pol...   227   5e-58
tr|A5WKA3|A5WKA3_MYCTF Tax_Id=336982 RecName: Full=RNA polymeras...   227   5e-58
tr|A4KF55|A4KF55_MYCTU Tax_Id=395095 RecName: Full=RNA polymeras...   227   5e-58
tr|A2VG40|A2VG40_MYCTU Tax_Id=348776 RecName: Full=RNA polymeras...   227   5e-58
tr|A1T4T4|A1T4T4_MYCVP Tax_Id=350058 RecName: Full=RNA polymeras...   194   4e-48
tr|A4TED5|A4TED5_MYCGI Tax_Id=350054 RecName: Full=RNA polymeras...   188   2e-46
tr|Q1BD71|Q1BD71_MYCSS Tax_Id=164756 SubName: Full=RNA polymeras...   176   9e-43
tr|A1UBS1|A1UBS1_MYCSK Tax_Id=189918 SubName: Full=RNA polymeras...   176   9e-43
tr|A3PVF7|A3PVF7_MYCSJ Tax_Id=164757 SubName: Full=RNA polymeras...   174   4e-42
tr|A0QSI0|A0QSI0_MYCS2 Tax_Id=246196 SubName: Full=RNA polymeras...   169   1e-40
tr|Q5YN77|Q5YN77_NOCFA Tax_Id=37329 RecName: Full=RNA polymerase...   162   1e-38
tr|C1AUM1|C1AUM1_RHOOB Tax_Id=632772 (sigL)RecName: Full=RNA pol...   162   1e-38
tr|Q0SHA1|Q0SHA1_RHOSR Tax_Id=101510 RecName: Full=RNA polymeras...   162   1e-38
tr|B1MAH3|B1MAH3_MYCA9 Tax_Id=561007 RecName: Full=RNA polymeras...   151   2e-35
tr|C5BVS0|C5BVS0_BEUC1 Tax_Id=471853 RecName: Full=RNA polymeras...   145   2e-33
tr|A6W8Z7|A6W8Z7_KINRD Tax_Id=266940 SubName: Full=RNA polymeras...   142   2e-32
tr|C1WIH3|C1WIH3_9ACTO Tax_Id=479435 RecName: Full=RNA polymeras...   140   6e-32
tr|D1BRM2|D1BRM2_9MICO Tax_Id=446471 SubName: Full=RNA polymeras...   138   3e-31
tr|A1SHA4|A1SHA4_NOCSJ Tax_Id=196162 RecName: Full=RNA polymeras...   137   4e-31
tr|C8XBM9|C8XBM9_NAKMY Tax_Id=479431 SubName: Full=RNA polymeras...   137   5e-31
tr|C1RNL1|C1RNL1_9CELL Tax_Id=446466 RecName: Full=RNA polymeras...   136   1e-30
tr|B0RF42|B0RF42_CLAMS Tax_Id=31964 SubName: Full=Putative RNA p...   132   2e-29
tr|A5CMM6|A5CMM6_CLAM3 Tax_Id=443906 (sigL)SubName: Full=Putativ...   132   2e-29
tr|A0R2S2|A0R2S2_MYCS2 Tax_Id=246196 RecName: Full=RNA polymeras...   130   4e-29
tr|A3TIY0|A3TIY0_9MICO Tax_Id=313589 RecName: Full=RNA polymeras...   125   2e-27
tr|C4RKS5|C4RKS5_9ACTO Tax_Id=219305 SubName: Full=LuxR family t...   124   5e-27
tr|A8M605|A8M605_SALAI Tax_Id=391037 SubName: Full=Transcription...   122   1e-26
tr|C4ELZ1|C4ELZ1_STRRS Tax_Id=479432 RecName: Full=RNA polymeras...   121   3e-26
tr|A9WR01|A9WR01_RENSM Tax_Id=288705 (sigL)SubName: Full=RNA pol...   119   1e-25
tr|A0LQX3|A0LQX3_ACIC1 Tax_Id=351607 RecName: Full=RNA polymeras...   117   5e-25
tr|D1A4F8|D1A4F8_THECU Tax_Id=471852 SubName: Full=RNA polymeras...   115   2e-24
tr|C4DIR0|C4DIR0_9ACTO Tax_Id=446470 SubName: Full=RNA polymeras...   112   2e-23
tr|B2LX16|B2LX16_STRCL Tax_Id=443255 SubName: Full=Putative RNA ...   110   8e-23
tr|B5GLE8|B5GLE8_STRCL Tax_Id=443255 SubName: Full=Transcription...   109   1e-22
tr|C6WA00|C6WA00_ACTMD Tax_Id=446462 SubName: Full=RNA polymeras...   105   2e-21
tr|B4VEY9|B4VEY9_9ACTO Tax_Id=465541 SubName: Full=RNA polymeras...   105   3e-21
tr|B5GSJ0|B5GSJ0_STRCL Tax_Id=443255 RecName: Full=RNA polymeras...   104   4e-21
tr|C7QKH2|C7QKH2_CATAD Tax_Id=479433 RecName: Full=RNA polymeras...   103   1e-20
tr|Q9L1U1|Q9L1U1_STRCO Tax_Id=1902 RecName: Full=RNA polymerase ...   102   2e-20
tr|Q82D61|Q82D61_STRAW Tax_Id=33903 (sig45)RecName: Full=RNA pol...   102   2e-20
tr|B5HP02|B5HP02_9ACTO Tax_Id=463191 RecName: Full=RNA polymeras...   102   2e-20

>tr|B2HCV7|B2HCV7_MYCMM Tax_Id=216594 (sigL)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium marinum]
          Length = 177

 Score =  267 bits (683), Expect = 3e-70
 Identities = 140/177 (79%), Positives = 141/177 (79%)

Query: 1   VARVXXXXXXXXXLMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDE 60
           +ARV         LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDE
Sbjct: 1   MARVAGGGAAEAALMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDE 60

Query: 61  RGRSARAWLFTVARNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXX 120
           RGRSARAWLFTVARNMIIDD            TDADGAPEQSTPDEVG            
Sbjct: 61  RGRSARAWLFTVARNMIIDDRRSARYRYVVSSTDADGAPEQSTPDEVGAALDRLLIADAL 120

Query: 121 XXXSGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
              SGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct: 121 AQLSGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177


>tr|A0PMA0|A0PMA0_MYCUA Tax_Id=362242 (sigL)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium ulcerans]
          Length = 177

 Score =  266 bits (679), Expect = 9e-70
 Identities = 139/177 (78%), Positives = 140/177 (79%)

Query: 1   VARVXXXXXXXXXLMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDE 60
           +ARV         LMQALYDEHAAVLWRY MRLTSDASYADDIVQETLLRAWQHPEVIDE
Sbjct: 1   MARVAGGGAAEAALMQALYDEHAAVLWRYTMRLTSDASYADDIVQETLLRAWQHPEVIDE 60

Query: 61  RGRSARAWLFTVARNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXX 120
           RGRSARAWLFTVARNMIIDD            TDADGAPEQSTPDEVG            
Sbjct: 61  RGRSARAWLFTVARNMIIDDRRSARYRYVVSSTDADGAPEQSTPDEVGAALGRLLIADAL 120

Query: 121 XXXSGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
              SGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct: 121 AQLSGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177


>tr|Q73S75|Q73S75_MYCPA Tax_Id=1770 (sigL)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium paratuberculosis]
          Length = 181

 Score =  231 bits (590), Expect = 2e-59
 Identities = 120/164 (73%), Positives = 126/164 (76%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           LM+ALYDEHAAVLWRYA+RLT DAS ++D+VQETLLRAWQHPEVI +  RSARAWLFTVA
Sbjct: 18  LMKALYDEHAAVLWRYALRLTGDASQSEDVVQETLLRAWQHPEVIGDTERSARAWLFTVA 77

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           RNMIIDD            TD  GAPEQSTPDEV                S EHRAVIER
Sbjct: 78  RNMIIDDRRSARFRNVVGSTDTAGAPEQSTPDEVNAALDRLLIADAMAQLSAEHRAVIER 137

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
           SYYRGWTTAQIA DL IAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct: 138 SYYRGWTTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 181


>tr|A0QKX8|A0QKX8_MYCA1 Tax_Id=243243 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium avium]
          Length = 178

 Score =  231 bits (590), Expect = 2e-59
 Identities = 120/164 (73%), Positives = 126/164 (76%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           LM+ALYDEHAAVLWRYA+RLT DAS ++D+VQETLLRAWQHPEVI +  RSARAWLFTVA
Sbjct: 15  LMKALYDEHAAVLWRYALRLTGDASQSEDVVQETLLRAWQHPEVIGDTERSARAWLFTVA 74

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           RNMIIDD            TD  GAPEQSTPDEV                S EHRAVIER
Sbjct: 75  RNMIIDDRRSARFRNVVGSTDTAGAPEQSTPDEVNAALDRLLIADAMAQLSAEHRAVIER 134

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
           SYYRGWTTAQIA DL IAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct: 135 SYYRGWTTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 178


>tr|Q7D9D4|Q7D9D4_MYCTU Tax_Id=1773 (sigL)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium tuberculosis]
          Length = 177

 Score =  227 bits (578), Expect = 5e-58
 Identities = 118/177 (66%), Positives = 128/177 (72%)

Query: 1   VARVXXXXXXXXXLMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDE 60
           +ARV         LM+ALYDEHAAVLWRYA+RLT DA+ A+D+VQETLLRAWQHPEVI +
Sbjct: 1   MARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD 60

Query: 61  RGRSARAWLFTVARNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXX 120
             R ARAWLFTVARNMIID+            TD  G PEQSTPDEV             
Sbjct: 61  TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL 120

Query: 121 XXXSGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
              S EHRAVI+RSYYRGW+TAQIA DL IAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct: 121 AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177


>tr|O53798|O53798_MYCBO Tax_Id=1765 (sigL)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium bovis]
          Length = 177

 Score =  227 bits (578), Expect = 5e-58
 Identities = 118/177 (66%), Positives = 128/177 (72%)

Query: 1   VARVXXXXXXXXXLMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDE 60
           +ARV         LM+ALYDEHAAVLWRYA+RLT DA+ A+D+VQETLLRAWQHPEVI +
Sbjct: 1   MARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD 60

Query: 61  RGRSARAWLFTVARNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXX 120
             R ARAWLFTVARNMIID+            TD  G PEQSTPDEV             
Sbjct: 61  TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL 120

Query: 121 XXXSGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
              S EHRAVI+RSYYRGW+TAQIA DL IAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct: 121 AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177


>tr|C6DUQ1|C6DUQ1_MYCTK Tax_Id=478434 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis]
          Length = 177

 Score =  227 bits (578), Expect = 5e-58
 Identities = 118/177 (66%), Positives = 128/177 (72%)

Query: 1   VARVXXXXXXXXXLMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDE 60
           +ARV         LM+ALYDEHAAVLWRYA+RLT DA+ A+D+VQETLLRAWQHPEVI +
Sbjct: 1   MARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD 60

Query: 61  RGRSARAWLFTVARNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXX 120
             R ARAWLFTVARNMIID+            TD  G PEQSTPDEV             
Sbjct: 61  TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL 120

Query: 121 XXXSGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
              S EHRAVI+RSYYRGW+TAQIA DL IAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct: 121 AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177


>tr|C1AL69|C1AL69_MYCBT Tax_Id=561275 (sigL)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium bovis]
          Length = 177

 Score =  227 bits (578), Expect = 5e-58
 Identities = 118/177 (66%), Positives = 128/177 (72%)

Query: 1   VARVXXXXXXXXXLMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDE 60
           +ARV         LM+ALYDEHAAVLWRYA+RLT DA+ A+D+VQETLLRAWQHPEVI +
Sbjct: 1   MARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD 60

Query: 61  RGRSARAWLFTVARNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXX 120
             R ARAWLFTVARNMIID+            TD  G PEQSTPDEV             
Sbjct: 61  TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL 120

Query: 121 XXXSGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
              S EHRAVI+RSYYRGW+TAQIA DL IAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct: 121 AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177


>tr|A5U0C1|A5U0C1_MYCTA Tax_Id=419947 (sigL)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium tuberculosis]
          Length = 177

 Score =  227 bits (578), Expect = 5e-58
 Identities = 118/177 (66%), Positives = 128/177 (72%)

Query: 1   VARVXXXXXXXXXLMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDE 60
           +ARV         LM+ALYDEHAAVLWRYA+RLT DA+ A+D+VQETLLRAWQHPEVI +
Sbjct: 1   MARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD 60

Query: 61  RGRSARAWLFTVARNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXX 120
             R ARAWLFTVARNMIID+            TD  G PEQSTPDEV             
Sbjct: 61  TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL 120

Query: 121 XXXSGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
              S EHRAVI+RSYYRGW+TAQIA DL IAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct: 121 AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177


>tr|A1KGL6|A1KGL6_MYCBP Tax_Id=410289 (sigL)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium bovis]
          Length = 177

 Score =  227 bits (578), Expect = 5e-58
 Identities = 118/177 (66%), Positives = 128/177 (72%)

Query: 1   VARVXXXXXXXXXLMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDE 60
           +ARV         LM+ALYDEHAAVLWRYA+RLT DA+ A+D+VQETLLRAWQHPEVI +
Sbjct: 1   MARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD 60

Query: 61  RGRSARAWLFTVARNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXX 120
             R ARAWLFTVARNMIID+            TD  G PEQSTPDEV             
Sbjct: 61  TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL 120

Query: 121 XXXSGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
              S EHRAVI+RSYYRGW+TAQIA DL IAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct: 121 AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177


>tr|A5WKA3|A5WKA3_MYCTF Tax_Id=336982 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis]
          Length = 177

 Score =  227 bits (578), Expect = 5e-58
 Identities = 118/177 (66%), Positives = 128/177 (72%)

Query: 1   VARVXXXXXXXXXLMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDE 60
           +ARV         LM+ALYDEHAAVLWRYA+RLT DA+ A+D+VQETLLRAWQHPEVI +
Sbjct: 1   MARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD 60

Query: 61  RGRSARAWLFTVARNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXX 120
             R ARAWLFTVARNMIID+            TD  G PEQSTPDEV             
Sbjct: 61  TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL 120

Query: 121 XXXSGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
              S EHRAVI+RSYYRGW+TAQIA DL IAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct: 121 AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177


>tr|A4KF55|A4KF55_MYCTU Tax_Id=395095 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis str. Haarlem]
          Length = 177

 Score =  227 bits (578), Expect = 5e-58
 Identities = 118/177 (66%), Positives = 128/177 (72%)

Query: 1   VARVXXXXXXXXXLMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDE 60
           +ARV         LM+ALYDEHAAVLWRYA+RLT DA+ A+D+VQETLLRAWQHPEVI +
Sbjct: 1   MARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD 60

Query: 61  RGRSARAWLFTVARNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXX 120
             R ARAWLFTVARNMIID+            TD  G PEQSTPDEV             
Sbjct: 61  TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL 120

Query: 121 XXXSGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
              S EHRAVI+RSYYRGW+TAQIA DL IAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct: 121 AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177


>tr|A2VG40|A2VG40_MYCTU Tax_Id=348776 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis C]
          Length = 177

 Score =  227 bits (578), Expect = 5e-58
 Identities = 118/177 (66%), Positives = 128/177 (72%)

Query: 1   VARVXXXXXXXXXLMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDE 60
           +ARV         LM+ALYDEHAAVLWRYA+RLT DA+ A+D+VQETLLRAWQHPEVI +
Sbjct: 1   MARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD 60

Query: 61  RGRSARAWLFTVARNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXX 120
             R ARAWLFTVARNMIID+            TD  G PEQSTPDEV             
Sbjct: 61  TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL 120

Query: 121 XXXSGEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
              S EHRAVI+RSYYRGW+TAQIA DL IAEGTVKSRLHYAVRALRLTLQELGVTR
Sbjct: 121 AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR 177


>tr|A1T4T4|A1T4T4_MYCVP Tax_Id=350058 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium vanbaalenii]
          Length = 171

 Score =  194 bits (492), Expect = 4e-48
 Identities = 96/164 (58%), Positives = 114/164 (69%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           +M+ LYDEHAA LWRYA+RLT D + A+D+VQETLLRAW+HPEV  +  RSARAWLFTVA
Sbjct: 8   MMRVLYDEHAAALWRYALRLTGDRARAEDVVQETLLRAWRHPEVTADVDRSARAWLFTVA 67

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           RNMIID+             D +  P+ ++PDE                 S EHRAV+ R
Sbjct: 68  RNMIIDERRSARFKHESGVADTEYVPDSASPDEADTALDRILLSTALSQLSDEHRAVVRR 127

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
           +YY+GWTT QIA DL I EGTVKSRLHYAVRAL+L LQE+GVTR
Sbjct: 128 AYYQGWTTGQIAADLNIPEGTVKSRLHYAVRALKLGLQEMGVTR 171


>tr|A4TED5|A4TED5_MYCGI Tax_Id=350054 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium gilvum]
          Length = 171

 Score =  188 bits (477), Expect = 2e-46
 Identities = 94/164 (57%), Positives = 113/164 (68%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           +M+ LYDEHAA LWRYA+RLT D + ++D+VQETLLRAW+HP VI +  R ARAWLFTVA
Sbjct: 8   MMRVLYDEHAAALWRYALRLTGDRARSEDVVQETLLRAWRHPGVIADVDRPARAWLFTVA 67

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           RNMIID+             D +   E ++PDE                 S EHRAV+ R
Sbjct: 68  RNMIIDERRSARFRHETGVPDPEHVAEPASPDEADPTLDRILLGTALRQLSDEHRAVVRR 127

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
           +YY+GWTT QIA DL+I EGTVKSRLHYAVRAL+L LQE+GVTR
Sbjct: 128 AYYQGWTTGQIAADLQIPEGTVKSRLHYAVRALKLGLQEMGVTR 171


>tr|Q1BD71|Q1BD71_MYCSS Tax_Id=164756 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Mycobacterium sp.]
          Length = 166

 Score =  176 bits (446), Expect = 9e-43
 Identities = 90/164 (54%), Positives = 109/164 (66%), Gaps = 5/164 (3%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           +M+ LYDEHA  LWRYA++LT DA+ A+D+VQETLLRAW+H         SARAWLFTVA
Sbjct: 8   MMRVLYDEHADALWRYALKLTGDAATAEDVVQETLLRAWRH-----RPNGSARAWLFTVA 62

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           RN++ID+             D D   + S PD+V                S +HRAV+ R
Sbjct: 63  RNLVIDERRSARYRREAGTPDVDTVAQPSEPDKVDSALDRMLIGSALAQLSEDHRAVVRR 122

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
           +YY+GWTT QIA +LEI EGTVKSRLHYAVRALRL LQE+GVTR
Sbjct: 123 AYYQGWTTGQIAAELEIPEGTVKSRLHYAVRALRLNLQEMGVTR 166


>tr|A1UBS1|A1UBS1_MYCSK Tax_Id=189918 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Mycobacterium sp.]
          Length = 166

 Score =  176 bits (446), Expect = 9e-43
 Identities = 90/164 (54%), Positives = 109/164 (66%), Gaps = 5/164 (3%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           +M+ LYDEHA  LWRYA++LT DA+ A+D+VQETLLRAW+H         SARAWLFTVA
Sbjct: 8   MMRVLYDEHADALWRYALKLTGDAATAEDVVQETLLRAWRH-----RPNGSARAWLFTVA 62

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           RN++ID+             D D   + S PD+V                S +HRAV+ R
Sbjct: 63  RNLVIDERRSARYRREAGTPDVDTVAQPSEPDKVDSALDRMLIGSALAQLSEDHRAVVRR 122

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
           +YY+GWTT QIA +LEI EGTVKSRLHYAVRALRL LQE+GVTR
Sbjct: 123 AYYQGWTTGQIAAELEIPEGTVKSRLHYAVRALRLNLQEMGVTR 166


>tr|A3PVF7|A3PVF7_MYCSJ Tax_Id=164757 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Mycobacterium sp.]
          Length = 166

 Score =  174 bits (441), Expect = 4e-42
 Identities = 89/164 (54%), Positives = 109/164 (66%), Gaps = 5/164 (3%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           +M+ LYDEHA  LWRYA++LT DA+ A+D+VQETLLRAW+H         SARAWLFTVA
Sbjct: 8   MMRVLYDEHADALWRYALQLTGDAATAEDVVQETLLRAWRH-----RPNGSARAWLFTVA 62

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           RN++ID+             D +   + S PD+V                S +HRAV+ R
Sbjct: 63  RNLVIDERRSARYRREAGTPDVETVAQPSEPDKVDSALDRMLIGSALAQLSEDHRAVVRR 122

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
           +YY+GWTT QIA +LEI EGTVKSRLHYAVRALRL LQE+GVTR
Sbjct: 123 AYYQGWTTGQIAAELEIPEGTVKSRLHYAVRALRLNLQEMGVTR 166


>tr|A0QSI0|A0QSI0_MYCS2 Tax_Id=246196 SubName: Full=RNA polymerase
           sigma-70 factor;[Mycobacterium smegmatis]
          Length = 180

 Score =  169 bits (428), Expect = 1e-40
 Identities = 90/173 (52%), Positives = 111/173 (64%), Gaps = 9/173 (5%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERG---------RS 64
           +M+ALYDEHA  LWRYA+RLT D + A+D+VQETLLRAW+H   +   G         RS
Sbjct: 8   MMRALYDEHATALWRYALRLTGDPARAEDVVQETLLRAWRHQPDLRTGGGADGIAGPDRS 67

Query: 65  ARAWLFTVARNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXS 124
            RAWLFTVARNMIID+             D +   + +T D+V                S
Sbjct: 68  PRAWLFTVARNMIIDERRSARFRNETDVPDPEQVADHATSDQVDTALDRLLLGTALRQLS 127

Query: 125 GEHRAVIERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
            +HRAVI R+YY+G TT QIA +L+I EGTVKSRLHYAVRAL+L+LQE+GVTR
Sbjct: 128 DDHRAVIRRAYYQGLTTGQIAAELQIPEGTVKSRLHYAVRALKLSLQEMGVTR 180


>tr|Q5YN77|Q5YN77_NOCFA Tax_Id=37329 RecName: Full=RNA polymerase
           sigma factor;[Nocardia farcinica]
          Length = 169

 Score =  162 bits (411), Expect = 1e-38
 Identities = 85/163 (52%), Positives = 102/163 (62%), Gaps = 3/163 (1%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           LM+ LY EHA  LWRY + L  DA  A+DIVQETLLRAWQ P V+D+   SARAWLFTVA
Sbjct: 8   LMRVLYREHAPALWRYTLGLVRDAGRAEDIVQETLLRAWQRPSVLDQSTTSARAWLFTVA 67

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           RN+++DD               D  PEQ+ PD                  S +HR VI R
Sbjct: 68  RNLVVDDFRSARNRREFR---TDNPPEQAEPDRSDRALDSWLVADALGGLSADHREVIVR 124

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVT 176
           +YYRG +T QIA +L+I  GTVKSR+HY +RALRL LQE+GVT
Sbjct: 125 AYYRGLSTNQIAAELDIPAGTVKSRMHYGMRALRLALQEMGVT 167


>tr|C1AUM1|C1AUM1_RHOOB Tax_Id=632772 (sigL)RecName: Full=RNA
           polymerase sigma factor;[Rhodococcus opacus]
          Length = 168

 Score =  162 bits (411), Expect = 1e-38
 Identities = 84/164 (51%), Positives = 104/164 (63%), Gaps = 3/164 (1%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           LM ALY+EHA  +WRYA+RLT D + A+DIVQE LLRAW+HP V+D+   SARAWLFTVA
Sbjct: 8   LMHALYEEHAPAVWRYALRLTGDRARAEDIVQEVLLRAWKHPNVLDQSESSARAWLFTVA 67

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           RN++ D+                  PE++ PD                  S +HRAV+  
Sbjct: 68  RNLVFDE---HRSARSQREVGMSSTPERAAPDGSDGALDAWMMGDALARLSTDHRAVLVL 124

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
            YYRG +T QIA +L I EGTVKSR+HY +RALRL LQE+GVTR
Sbjct: 125 GYYRGMSTHQIADELGIPEGTVKSRMHYGLRALRLALQEMGVTR 168


>tr|Q0SHA1|Q0SHA1_RHOSR Tax_Id=101510 RecName: Full=RNA polymerase
           sigma factor;[Rhodococcus sp.]
          Length = 168

 Score =  162 bits (410), Expect = 1e-38
 Identities = 83/164 (50%), Positives = 105/164 (64%), Gaps = 3/164 (1%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           LM ALY+EHA  +WRYA+RLT D + A+DIVQE LLRAW+HP V+D+   SARAWLFTVA
Sbjct: 8   LMHALYEEHAPAVWRYALRLTGDRARAEDIVQEVLLRAWKHPNVLDQSESSARAWLFTVA 67

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           RN++ D+            +     PE++ PD                  S +HRAV+  
Sbjct: 68  RNLVFDEHRSARSQREIGMS---STPERAAPDSSDGALDAWMMGDALARLSPDHRAVLVL 124

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
            YYRG +T Q+A +L I EGTVKSR+HY +RALRL LQE+GVTR
Sbjct: 125 GYYRGMSTHQMADELGIPEGTVKSRMHYGLRALRLALQEMGVTR 168


>tr|B1MAH3|B1MAH3_MYCA9 Tax_Id=561007 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium abscessus]
          Length = 160

 Score =  151 bits (382), Expect = 2e-35
 Identities = 80/163 (49%), Positives = 105/163 (64%), Gaps = 3/163 (1%)

Query: 15  MQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVAR 74
           M+A YDE+A  L RY M LT D++ A+DIVQE LLRAW+HP ++++   SARAWLFTVA 
Sbjct: 1   MRAFYDEYAGPLHRYVMHLTHDSALAEDIVQEVLLRAWRHPTLVNQTEGSARAWLFTVAH 60

Query: 75  NMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIERS 134
           N++ D+             +    PE ++PD+V                S +HRAVI R+
Sbjct: 61  NLVRDNARSSRFRSEIATAE---TPEFASPDQVDATLDAWLVAEALRTLSTDHRAVILRA 117

Query: 135 YYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
           YYRG + A I+ +L + EGTVKSRLHY VRALRL+LQE+GVTR
Sbjct: 118 YYRGSSVADISAELGVPEGTVKSRLHYGVRALRLSLQEMGVTR 160


>tr|C5BVS0|C5BVS0_BEUC1 Tax_Id=471853 RecName: Full=RNA polymerase
           sigma factor;[Beutenbergia cavernae]
          Length = 167

 Score =  145 bits (365), Expect = 2e-33
 Identities = 79/164 (48%), Positives = 99/164 (60%), Gaps = 3/164 (1%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           LM+AL+D HA  L RY + L  +    DD+VQETL+RAW+ PEV+DE  RSARAWLFTVA
Sbjct: 7   LMRALHDAHAPALRRYVVALGVEGGGVDDVVQETLVRAWRKPEVLDETQRSARAWLFTVA 66

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           R+++ID+             D    P+ +  DE                 + EHR+V+ R
Sbjct: 67  RHLVIDEHRTARRRHERPAWD---PPDVAVDDESDHLLDQWLVADALAALTPEHRSVVVR 123

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
           +YY GW+ AQIA    I  GTVKSRLHY +RALRL LQE GVTR
Sbjct: 124 AYYGGWSVAQIASAAGIPAGTVKSRLHYGLRALRLALQEKGVTR 167


>tr|A6W8Z7|A6W8Z7_KINRD Tax_Id=266940 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Kineococcus
           radiotolerans]
          Length = 168

 Score =  142 bits (357), Expect = 2e-32
 Identities = 76/164 (46%), Positives = 96/164 (58%), Gaps = 3/164 (1%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           L++AL+DEHA  LW Y + LT D + A D+VQETLLRAW+HPE +D    S R WLFTVA
Sbjct: 8   LVRALHDEHAGALWSYVVSLTGDRASAHDVVQETLLRAWRHPESLDPARGSTRGWLFTVA 67

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           R ++IDD             D    P++   DE                 S EHRAV+  
Sbjct: 68  RRLVIDDWRSARNRRESVHAD---VPDRVVVDESEQVLQQWVVTQALTRLSPEHRAVLGE 124

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
            Y+RG + A+ A+ L I EGTVKSR HYA+  LRL LQE+GV+R
Sbjct: 125 CYFRGRSVAEAARTLAIPEGTVKSRTHYALMNLRLALQEMGVSR 168


>tr|C1WIH3|C1WIH3_9ACTO Tax_Id=479435 RecName: Full=RNA polymerase
           sigma factor;[Kribbella flavida DSM 17836]
          Length = 169

 Score =  140 bits (353), Expect = 6e-32
 Identities = 74/164 (45%), Positives = 99/164 (60%), Gaps = 3/164 (1%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           L++ L+D HA  LWR+ +RLT D   A+D+VQETLLRAW+ P+++ E    ARAWLFTVA
Sbjct: 8   LLRELHDVHAPSLWRFVVRLTGDDRLAEDVVQETLLRAWRRPQILTEDEAGARAWLFTVA 67

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           RN++IDD              +D  PE+++ D                  S +HR VI R
Sbjct: 68  RNLVIDDRRSARVNREFA---SDELPERASADHANAVLDAWLVADSLAQLSDDHRQVIVR 124

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
           +YY   T + IA +L I  GTVKSR+HY +RAL+L LQE GVT+
Sbjct: 125 AYYGRRTVSDIAAELGIPPGTVKSRMHYGLRALKLALQEKGVTQ 168


>tr|D1BRM2|D1BRM2_9MICO Tax_Id=446471 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Xylanimonas
           cellulosilytica DSM 15894]
          Length = 170

 Score =  138 bits (347), Expect = 3e-31
 Identities = 74/163 (45%), Positives = 96/163 (58%), Gaps = 3/163 (1%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           ++ A++  HAA L RY   LTSD     D+VQETLLRAW+HPEV++    S RAWLFTVA
Sbjct: 10  VLAAVHGTHAAALHRYVRHLTSDEEQTRDVVQETLLRAWRHPEVLERPEDSVRAWLFTVA 69

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           +++++D                   PE+  PD                  S EHRAV+  
Sbjct: 70  KHLVVDQRRSARHAHERTTA---VVPERPEPDRTQQVLDAWLVADALAGLSAEHRAVVVG 126

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVT 176
           +YY G + A++A DLEI  GTVKSR+HYA+RALRL+LQE GVT
Sbjct: 127 AYYGGRSVAELADDLEIPPGTVKSRMHYALRALRLSLQEKGVT 169


>tr|A1SHA4|A1SHA4_NOCSJ Tax_Id=196162 RecName: Full=RNA polymerase
           sigma factor;[Nocardioides sp.]
          Length = 174

 Score =  137 bits (346), Expect = 4e-31
 Identities = 78/164 (47%), Positives = 99/164 (60%), Gaps = 5/164 (3%)

Query: 14  LMQALYDEHAAVLWRYAMRLTS-DASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTV 72
           LMQ L+DEHAA LW Y +RLT  D + A+D+VQETLLRAW++   +DE   S RAWLF V
Sbjct: 12  LMQQLHDEHAAALWGYCLRLTGQDRARAEDVVQETLLRAWRNFPALDEAHGSVRAWLFRV 71

Query: 73  ARNMIIDDXXXXXXXXXXXXTDA-DGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVI 131
           ARN++ID+             D  DGA E    D++                S EHRAV+
Sbjct: 72  ARNIVIDEWRTKRWQSEIAVADVPDGAGESDRTDQL---LLSWVVGDALTRLSAEHRAVL 128

Query: 132 ERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGV 175
              YYRG + A+ ++ L + EGTVKSR HYA+RALRL L+E GV
Sbjct: 129 LECYYRGQSVAEASRRLGVPEGTVKSRTHYALRALRLALEESGV 172


>tr|C8XBM9|C8XBM9_NAKMY Tax_Id=479431 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Nakamurella
           multipartita]
          Length = 193

 Score =  137 bits (345), Expect = 5e-31
 Identities = 74/165 (44%), Positives = 96/165 (58%), Gaps = 4/165 (2%)

Query: 14  LMQALYDEHAAVLWRYAMRLTS-DASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTV 72
           L++AL+DEHA  LW + + LT  D S A+D+VQETL RAW+ P V+ ++  SAR WLFTV
Sbjct: 32  LLKALHDEHATALWHFVLHLTGGDRSRAEDVVQETLFRAWRRPAVLAQQQSSARGWLFTV 91

Query: 73  ARNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIE 132
           ARN+++D             T  +  PE   PD                  S +H AV+ 
Sbjct: 92  ARNIVVDGWRADRRRPT---TSTESVPEPLQPDATDRALQAMVVAEAMQRLSHDHGAVLL 148

Query: 133 RSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
             YYRG T AQ A  L+I  GTVKSRLHYA+ ALRL L+E+GV +
Sbjct: 149 ECYYRGCTAAQAAARLDIPIGTVKSRLHYALHALRLVLEEMGVVK 193


>tr|C1RNL1|C1RNL1_9CELL Tax_Id=446466 RecName: Full=RNA polymerase
           sigma factor;[Cellulomonas flavigena DSM 20109]
          Length = 169

 Score =  136 bits (342), Expect = 1e-30
 Identities = 76/163 (46%), Positives = 100/163 (61%), Gaps = 4/163 (2%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           L++A +  HAAVL RY +RLT D + A D+VQETLLRAW+HPEV+     S RAWLFTVA
Sbjct: 10  LLRATHATHAAVLHRYVVRLT-DPARAPDVVQETLLRAWRHPEVLTRPEPSVRAWLFTVA 68

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           RN+++DD            T +D  P+    D                  + +HRA +  
Sbjct: 69  RNLVVDD---ARSAHRRHETPSDAPPDTPGDDGTQAVLDRWLVADALAALTPDHRADVVG 125

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVT 176
           +YYR  + A++A +L++A GTVKSRLHYA+RALRL LQE GVT
Sbjct: 126 AYYRRRSVAELAAELDVAPGTVKSRLHYALRALRLALQERGVT 168


>tr|B0RF42|B0RF42_CLAMS Tax_Id=31964 SubName: Full=Putative RNA
           polymerase sigma factor;[Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 168

 Score =  132 bits (332), Expect = 2e-29
 Identities = 72/163 (44%), Positives = 92/163 (56%), Gaps = 3/163 (1%)

Query: 15  MQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVAR 74
           M+AL+D HA  L RYA+RLT D + A+D+VQE LLRAW+ P ++ E   SAR WLFTV R
Sbjct: 9   MRALHDAHAPALQRYALRLTGDPALAEDVVQEALLRAWRSPAILAEDDESARRWLFTVVR 68

Query: 75  NMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIERS 134
           N++IDD            T  D  PE    D                  S EHR  +   
Sbjct: 69  NLVIDD---RRSAWRGRETPTDTLPEDPVADASDAIIDRLLVAEALASLSAEHRRAVVSC 125

Query: 135 YYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
           Y+ G + A+ A+   +  GT+KSRLHYA++ALRL LQE GVTR
Sbjct: 126 YHLGRSVAETAEREGVPPGTIKSRLHYALKALRLALQERGVTR 168


>tr|A5CMM6|A5CMM6_CLAM3 Tax_Id=443906 (sigL)SubName: Full=Putative
           RNA polymerase ECF-subfamily sigma factor;[Clavibacter
           michiganensis subsp. michiganensis]
          Length = 168

 Score =  132 bits (331), Expect = 2e-29
 Identities = 72/163 (44%), Positives = 91/163 (55%), Gaps = 3/163 (1%)

Query: 15  MQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVAR 74
           M+AL+D HA  L RYA+RLT D + A+D+VQE LLRAW+ P ++ E   SAR WLFTV R
Sbjct: 9   MRALHDAHAPALQRYALRLTGDPALAEDVVQEALLRAWRSPAILAEDDESARRWLFTVVR 68

Query: 75  NMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIERS 134
           N++IDD            T  D  PE    D                  S EHR  +   
Sbjct: 69  NLVIDD---RRSAWRGRETPTDVLPEDPVADASDAIIDRLLVAEALASLSAEHRRAVVSC 125

Query: 135 YYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
           Y+ G T  + A+   +  GT+KSRLHYA++ALRL LQE GVTR
Sbjct: 126 YHLGRTVVETAEREGVPPGTIKSRLHYALKALRLALQERGVTR 168


>tr|A0R2S2|A0R2S2_MYCS2 Tax_Id=246196 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium smegmatis]
          Length = 174

 Score =  130 bits (328), Expect = 4e-29
 Identities = 73/160 (45%), Positives = 92/160 (57%), Gaps = 1/160 (0%)

Query: 15  MQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVAR 74
           M  LY  H   L RYA RLTS+ + ++DIVQET LRAW+H +  D      R+WLFTVAR
Sbjct: 11  MLELYANHVDPLRRYAFRLTSNQTRSEDIVQETFLRAWRHLQNNDG-DLPLRSWLFTVAR 69

Query: 75  NMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIERS 134
           N++ID              D    P++   DEV                   HRAV+ RS
Sbjct: 70  NIVIDGSRSARVRYEVSSPDTPEVPDRMGADEVNAALDRILVAEAMAQLPESHRAVLSRS 129

Query: 135 YYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELG 174
           +Y GWTT +IA+DL IAEGTVKSRLHY+++ LRL L E+G
Sbjct: 130 FYLGWTTGRIAEDLGIAEGTVKSRLHYSLKRLRLILAEMG 169


>tr|A3TIY0|A3TIY0_9MICO Tax_Id=313589 RecName: Full=RNA polymerase
           sigma factor;[Janibacter sp. HTCC2649]
          Length = 162

 Score =  125 bits (314), Expect = 2e-27
 Identities = 72/163 (44%), Positives = 96/163 (58%), Gaps = 5/163 (3%)

Query: 15  MQALYDEHAAVLWRYAMRLTS-DASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           M  L+DEHAA LW Y + LT  D + A+D+VQETLLRAW++ + ++E   S RAWLFTVA
Sbjct: 1   MTQLHDEHAAALWGYCLSLTGRDHARAEDVVQETLLRAWRNHDRLEESRGSVRAWLFTVA 60

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTP-DEVGXXXXXXXXXXXXXXXSGEHRAVIE 132
           RN++ID+             +    PE   P D+                 S +HRAV+ 
Sbjct: 61  RNIVIDEWRTKRTQSELSVAEV---PEVREPGDQTDQMLLSWVVADALLGLSPDHRAVLV 117

Query: 133 RSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGV 175
             Y++G + AQ A  L I +GTVKSR HYA++ALRL LQE+GV
Sbjct: 118 ECYFKGASVAQAAHRLGIPDGTVKSRTHYALQALRLRLQEMGV 160


>tr|C4RKS5|C4RKS5_9ACTO Tax_Id=219305 SubName: Full=LuxR family
           transcriptional regulator;[Micromonospora sp. ATCC
           39149]
          Length = 164

 Score =  124 bits (310), Expect = 5e-27
 Identities = 71/164 (43%), Positives = 94/164 (57%), Gaps = 2/164 (1%)

Query: 14  LMQALYDEHAAVLWRYAMRLTS-DASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTV 72
           +++AL+DEHA  L+ +A+RL + D + A+D+VQETLLRAW+HPE +D    S RAWLFT 
Sbjct: 1   MLRALHDEHADALYAHALRLVNGDRTRAEDLVQETLLRAWRHPESLDPTRGSVRAWLFTT 60

Query: 73  ARNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIE 132
           ARN+ ID             TD    P   T DE                 S  HR V+ 
Sbjct: 61  ARNLAIDAWRRRSTRVGEIYTDELPEP-PDTVDEAERAVEAWTVAEALNRLSPTHREVLI 119

Query: 133 RSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVT 176
             +Y+G + A+ A  L +  GTVKSR HYA+R+LRL L E+GVT
Sbjct: 120 ECFYQGRSVAEAASRLGVPPGTVKSRTHYALRSLRLALAEMGVT 163


>tr|A8M605|A8M605_SALAI Tax_Id=391037 SubName: Full=Transcriptional
           regulator, LuxR family;[Salinispora arenicola]
          Length = 165

 Score =  122 bits (307), Expect = 1e-26
 Identities = 70/163 (42%), Positives = 93/163 (57%), Gaps = 2/163 (1%)

Query: 14  LMQALYDEHAAVLWRYAMRLTS-DASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTV 72
           +++AL+DEHA  L+ +A+RL + D   A+D+VQETLLRAW+HPE +D R  S R WLFT 
Sbjct: 1   MLRALHDEHADALYAHALRLVNGDRQRAEDLVQETLLRAWRHPESLDPRRGSVRGWLFTT 60

Query: 73  ARNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIE 132
           ARN+ ID             TD    P ++  DE                 S  HR V+ 
Sbjct: 61  ARNLAIDAWRRRSVRVGEVYTDELPEPPEAV-DEAERAVEAWTVAEALNRLSPTHREVLV 119

Query: 133 RSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGV 175
             +Y+G + A+ A  L I  GTVKSR HYA+R+LRL L E+GV
Sbjct: 120 ECFYQGRSVAEAAARLGIPPGTVKSRTHYALRSLRLVLAEMGV 162


>tr|C4ELZ1|C4ELZ1_STRRS Tax_Id=479432 RecName: Full=RNA polymerase
           sigma factor;[Streptosporangium roseum DSM 43021]
          Length = 183

 Score =  121 bits (304), Expect = 3e-26
 Identities = 67/162 (41%), Positives = 92/162 (56%), Gaps = 4/162 (2%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           L++AL+DEH   L+ Y +RLT D   A+D+VQETLLRAW+HP+ +   GR  RAWLFTVA
Sbjct: 24  LVRALFDEHGGPLYGYVLRLTGDPGRAEDVVQETLLRAWRHPDALS--GRPIRAWLFTVA 81

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           RN+++D             T A+        DE+                  EHR V+  
Sbjct: 82  RNLVVDQ--HRARKSRPPETGAEALAVLPADDELERAVESWAVAEALATLRPEHREVLAE 139

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGV 175
            YY+G +  + A+ L I  GTVKSR +YA+RAL+L L+E G+
Sbjct: 140 VYYQGKSVKEAAEALGIPAGTVKSRTYYALRALKLALEERGL 181


>tr|A9WR01|A9WR01_RENSM Tax_Id=288705 (sigL)SubName: Full=RNA
           polymerase sigma factor;[Renibacterium salmoninarum]
          Length = 413

 Score =  119 bits (298), Expect = 1e-25
 Identities = 62/152 (40%), Positives = 85/152 (55%), Gaps = 3/152 (1%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           ++  L+  HAA L R+  RLT D +YA+D+ QETL RAWQ P +++    + RAWLFTVA
Sbjct: 17  MLCTLHGAHAAELGRFVNRLTGDHAYAEDVTQETLFRAWQRPAILERPEAAVRAWLFTVA 76

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           RN+++DD              A+  PEQ   D                  S EHR V+  
Sbjct: 77  RNLVVDD---WRSARRRHEVGAESPPEQHQADATDRVLDSWLVTDALACLSLEHREVLVH 133

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRA 165
            YYR  +  +I++ L+I EGTVKSR+HYA+RA
Sbjct: 134 GYYRALSVREISQTLDIPEGTVKSRMHYALRA 165


>tr|A0LQX3|A0LQX3_ACIC1 Tax_Id=351607 RecName: Full=RNA polymerase
           sigma factor;[Acidothermus cellulolyticus]
          Length = 177

 Score =  117 bits (293), Expect = 5e-25
 Identities = 68/166 (40%), Positives = 92/166 (55%), Gaps = 3/166 (1%)

Query: 14  LMQALYDEHAAVLWRYAMRLTS-DASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTV 72
           L++ALY++H  VL+ Y +RL   D   A+DIVQET++RAW+HPE +     + R WLFTV
Sbjct: 10  LVRALYEQHGRVLFGYVLRLVDGDRGRAEDIVQETIIRAWRHPEALARDPHAIRPWLFTV 69

Query: 73  ARNMIIDDXXXXXXXXXXXXTDADG--APEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAV 130
           ARN+++D              +  G  A E      V                S +HR V
Sbjct: 70  ARNLVVDAHRAVRARPPEAGPEGLGVVAAEDDVVAAVDRALEAWQVADAINALSPDHRRV 129

Query: 131 IERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVT 176
           +  +YYRG + A+ A  L I  GTVKSR +YA+RALRL L+E GVT
Sbjct: 130 LIETYYRGRSVAEAAAVLGIPPGTVKSRTYYALRALRLILEERGVT 175


>tr|D1A4F8|D1A4F8_THECU Tax_Id=471852 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Thermomonospora curvata
           DSM 43183]
          Length = 185

 Score =  115 bits (288), Expect = 2e-24
 Identities = 70/163 (42%), Positives = 91/163 (55%), Gaps = 4/163 (2%)

Query: 14  LMQALYDEHAAVLWRYAMRLTS-DASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTV 72
           L+++LY EH   L  YA+RLT  D   A+DIVQETLLRAW+HPE +   GR  R WLFTV
Sbjct: 24  LLRSLYAEHGGPLLGYALRLTGGDRQQAEDIVQETLLRAWRHPEALT--GRPVRPWLFTV 81

Query: 73  ARNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIE 132
           ARN+ +D                  A      D++                S +HRAVI 
Sbjct: 82  ARNLAVDAHRARRSRPPETGLHEYAALPAGN-DDIDRALESWTVAEALADLSPQHRAVIL 140

Query: 133 RSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGV 175
            +YYRG + A+ A+ L I  GTVKSR +YA+RAL+L L+E G+
Sbjct: 141 ETYYRGRSVAEAAQVLGIPPGTVKSRTYYALRALKLALEERGL 183


>tr|C4DIR0|C4DIR0_9ACTO Tax_Id=446470 SubName: Full=RNA polymerase
           sigma factor, sigma-70 family;[Stackebrandtia
           nassauensis DSM 44728]
          Length = 185

 Score =  112 bits (279), Expect = 2e-23
 Identities = 67/165 (40%), Positives = 86/165 (52%), Gaps = 4/165 (2%)

Query: 14  LMQALYDEHAAVLWRYAMRLTS-DASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTV 72
           L+ AL+ EHA  LWRYA RLT  D + A D VQETLLRAW++  V+      AR WL+  
Sbjct: 20  LIHALHAEHADALWRYACRLTGGDEARAQDAVQETLLRAWRNSRVLASSPDHARRWLYRT 79

Query: 73  ARNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIE 132
            R+ +ID+               D  PE+   D V                S  HR V+ 
Sbjct: 80  LRSRVIDEWRYRKNRPEVI---TDTLPERHAADHVDSALQGLLVVEALRKLSPAHREVLM 136

Query: 133 RSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVTR 177
             +Y G +  + A+ L I  GTVKSRLHYA+RAL+L L+E GV R
Sbjct: 137 ECFYGGRSVNEAAEKLAIPAGTVKSRLHYALRALKLALEEAGVVR 181


>tr|B2LX16|B2LX16_STRCL Tax_Id=443255 SubName: Full=Putative RNA
           polymerase sigma factor;[Streptomyces clavuligerus ATCC
           27064]
          Length = 188

 Score =  110 bits (274), Expect = 8e-23
 Identities = 62/154 (40%), Positives = 81/154 (52%), Gaps = 2/154 (1%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           L++ALY+EH   L  YA RLT D   A+DIVQETL+RAW+HPE +     S R WL TVA
Sbjct: 17  LIRALYEEHGRALLGYAQRLTGDLGAAEDIVQETLIRAWRHPESLVNGKGSVRGWLLTVA 76

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           RN++ D                   P +   D                  S +HR V++ 
Sbjct: 77  RNIVTDRYRARAARPTEVAESPSNGPVEQ--DHAEAVVDSMVVMEALDQLSPDHREVLKE 134

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALR 167
            Y++G T A+ A+ L I  GTVKSR HYA++ALR
Sbjct: 135 IYFQGRTVAEAAQALGIPAGTVKSRSHYALKALR 168


>tr|B5GLE8|B5GLE8_STRCL Tax_Id=443255 SubName: Full=Transcriptional
           regulator;[Streptomyces clavuligerus ATCC 27064]
          Length = 172

 Score =  109 bits (272), Expect = 1e-22
 Identities = 61/154 (39%), Positives = 81/154 (52%), Gaps = 2/154 (1%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           +++ALY+EH   L  YA RLT D   A+DIVQETL+RAW+HPE +     S R WL TVA
Sbjct: 1   MIRALYEEHGRALLGYAQRLTGDLGAAEDIVQETLIRAWRHPESLVNGKGSVRGWLLTVA 60

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           RN++ D                   P +   D                  S +HR V++ 
Sbjct: 61  RNIVTDRYRARAARPTEVAESPSNGPVEQ--DHAEAVVDSMVVMEALDQLSPDHREVLKE 118

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALR 167
            Y++G T A+ A+ L I  GTVKSR HYA++ALR
Sbjct: 119 IYFQGRTVAEAAQALGIPAGTVKSRSHYALKALR 152


>tr|C6WA00|C6WA00_ACTMD Tax_Id=446462 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Actinosynnema mirum]
          Length = 181

 Score =  105 bits (262), Expect = 2e-21
 Identities = 61/156 (39%), Positives = 79/156 (50%), Gaps = 2/156 (1%)

Query: 14  LMQALYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           L++ LY+EH   L  YA RLT D + A+D+VQETL+RAW+HPE +     S R WL TVA
Sbjct: 17  LIRTLYEEHGRALLAYATRLTGDRAAAEDVVQETLVRAWRHPEALVNGKGSVRGWLLTVA 76

Query: 74  RNMIIDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIER 133
           RN+I D                   P     D                  S +HR V+  
Sbjct: 77  RNIITDRVRARAARPQEVAESPGTTPVAR--DHAEAVVDSVVVLEALHQLSSDHRDVLLE 134

Query: 134 SYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLT 169
            Y+RG +  + A+ L +  GTVKSR HYA+RALR T
Sbjct: 135 IYFRGRSVTEAAEALGVPPGTVKSRSHYALRALRET 170


>tr|B4VEY9|B4VEY9_9ACTO Tax_Id=465541 SubName: Full=RNA
           polymerase;[Streptomyces sp. Mg1]
          Length = 177

 Score =  105 bits (261), Expect = 3e-21
 Identities = 61/157 (38%), Positives = 79/157 (50%), Gaps = 2/157 (1%)

Query: 18  LYDEHAAVLWRYAMRLTSDASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVARNMI 77
           +Y+EH   L  YA RLT D + A+D+VQETL+RAW+H E +     S R WL TVARN+I
Sbjct: 1   MYEEHGHALLAYATRLTGDRAAAEDVVQETLIRAWRHSEALVNGKGSVRGWLLTVARNII 60

Query: 78  IDDXXXXXXXXXXXXTDADGAPEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAVIERSYYR 137
            D               A   P ++  D                  S EHR V+   YYR
Sbjct: 61  TDRYRAKAARPAEVSGSAAAPPVEA--DHADAVVNTMAVLGALEQLSPEHRDVLTELYYR 118

Query: 138 GWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELG 174
             + +++A  L I  GTVKSR HYA++ALR   Q  G
Sbjct: 119 QLSVSEVADRLGIPAGTVKSRSHYALKALREVFQNSG 155


>tr|B5GSJ0|B5GSJ0_STRCL Tax_Id=443255 RecName: Full=RNA polymerase
           sigma factor;[Streptomyces clavuligerus ATCC 27064]
          Length = 195

 Score =  104 bits (259), Expect = 4e-21
 Identities = 61/166 (36%), Positives = 92/166 (55%), Gaps = 7/166 (4%)

Query: 14  LMQALYDEHAAVLWRYAMRLTS-DASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTV 72
           LM+ALY EHA  L  Y +RL + D   A+D+VQETL+RAW++   ++    S R WL TV
Sbjct: 33  LMRALYREHAGPLLAYVLRLVAGDRQRAEDVVQETLIRAWKNAGQLNRAAGSVRPWLVTV 92

Query: 73  ARNMIIDDXXXXXXXXXXXXTDADGAPEQSTP--DEVGXXXXXXXXXXXXXXXSGEHRAV 130
           AR ++ID              + D +P +  P  DE+                +  HR V
Sbjct: 93  ARRIVIDGHRSRQARPQ----EVDPSPLEVIPAEDEIDKALWLMTLSDALDDLTPAHREV 148

Query: 131 IERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVT 176
           +  +Y++G T ++ A+ L I  GTV+SR+ YA+R+++L L+E GVT
Sbjct: 149 LVETYFKGRTVSEAAETLGIPSGTVRSRVFYALRSMKLALEERGVT 194


>tr|C7QKH2|C7QKH2_CATAD Tax_Id=479433 RecName: Full=RNA polymerase
           sigma factor;[Catenulispora acidiphila]
          Length = 177

 Score =  103 bits (256), Expect = 1e-20
 Identities = 61/165 (36%), Positives = 85/165 (51%), Gaps = 4/165 (2%)

Query: 15  MQALYDEHAAVLWRYAMRLTS-DASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTVA 73
           +++LY +HA  L  Y ++LT  D   A+D+VQET LRAWQH E       S RAWL TVA
Sbjct: 11  LRSLYADHAGPLLGYVLKLTDGDRGRAEDVVQETFLRAWQHAEAFAPERGSPRAWLCTVA 70

Query: 74  RNMIIDDXXXXXXXXXXXXTDADG---APEQSTPDEVGXXXXXXXXXXXXXXXSGEHRAV 130
           RN+++D              +      A E    D+                 S +HRAV
Sbjct: 71  RNIVVDQARARRSRPKEVGDEGLALGIAREAVVEDDHDRILLGWEVAEAMATLSPDHRAV 130

Query: 131 IERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGV 175
           +  +Y++G + A+ A  L I  GTVKSR +YA+RALR   +E G+
Sbjct: 131 LRETYFKGLSVAEAADVLGIPPGTVKSRTYYALRALRTAFEERGI 175


>tr|Q9L1U1|Q9L1U1_STRCO Tax_Id=1902 RecName: Full=RNA polymerase
           sigma factor;[Streptomyces coelicolor]
          Length = 194

 Score =  102 bits (254), Expect = 2e-20
 Identities = 61/166 (36%), Positives = 91/166 (54%), Gaps = 7/166 (4%)

Query: 14  LMQALYDEHAAVLWRYAMRLTS-DASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTV 72
           LM+ALY EHA  L  Y +RL + D   A+D+VQETL+RAW++   ++    S R WL TV
Sbjct: 32  LMRALYREHAGPLLAYVLRLVAGDRQRAEDVVQETLIRAWKNAGQLNRATGSVRPWLVTV 91

Query: 73  ARNMIIDDXXXXXXXXXXXXTDADGAPEQSTP--DEVGXXXXXXXXXXXXXXXSGEHRAV 130
           AR ++ID              + D +P +  P  DE+                +  HR V
Sbjct: 92  ARRIVIDGHRSRQARPQ----EVDPSPLEVIPAEDEIDKALWLMTLSDALDDLTPAHREV 147

Query: 131 IERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVT 176
           +  +Y++G T  + A+ L I  GTV+SR+ YA+R+++L L+E GVT
Sbjct: 148 LVETYFKGRTVNEAAQTLGIPSGTVRSRVFYALRSMKLALEERGVT 193


>tr|Q82D61|Q82D61_STRAW Tax_Id=33903 (sig45)RecName: Full=RNA
           polymerase sigma factor;[Streptomyces avermitilis]
          Length = 198

 Score =  102 bits (254), Expect = 2e-20
 Identities = 61/166 (36%), Positives = 91/166 (54%), Gaps = 7/166 (4%)

Query: 14  LMQALYDEHAAVLWRYAMRLTS-DASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTV 72
           LM+ALY EHA  L  Y +RL + D   A+D+VQETL+RAW++   ++    S R WL TV
Sbjct: 36  LMRALYREHAGPLLAYVLRLVAGDRQRAEDVVQETLIRAWKNAGQLNRATGSVRPWLVTV 95

Query: 73  ARNMIIDDXXXXXXXXXXXXTDADGAPEQSTP--DEVGXXXXXXXXXXXXXXXSGEHRAV 130
           AR ++ID              + D +P +  P  DE+                +  HR V
Sbjct: 96  ARRIVIDGHRSRQARPQ----EVDPSPLEVIPAEDEIDKALWLMTLSDALDDLTPAHREV 151

Query: 131 IERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVT 176
           +  +Y++G T  + A+ L I  GTV+SR+ YA+R+++L L+E GVT
Sbjct: 152 LVETYFKGRTVNEAAETLGIPSGTVRSRVFYALRSMKLALEERGVT 197


>tr|B5HP02|B5HP02_9ACTO Tax_Id=463191 RecName: Full=RNA polymerase
           sigma factor;[Streptomyces sviceus ATCC 29083]
          Length = 193

 Score =  102 bits (254), Expect = 2e-20
 Identities = 61/166 (36%), Positives = 91/166 (54%), Gaps = 7/166 (4%)

Query: 14  LMQALYDEHAAVLWRYAMRLTS-DASYADDIVQETLLRAWQHPEVIDERGRSARAWLFTV 72
           LM+ALY EHA  L  Y +RL + D   A+D+VQETL+RAW++   ++    S R WL TV
Sbjct: 31  LMRALYREHAGPLLAYVLRLVAGDRQRAEDVVQETLIRAWKNAGQLNRATGSVRPWLVTV 90

Query: 73  ARNMIIDDXXXXXXXXXXXXTDADGAPEQSTP--DEVGXXXXXXXXXXXXXXXSGEHRAV 130
           AR ++ID              + D +P +  P  DE+                +  HR V
Sbjct: 91  ARRIVIDGHRSRQARPQ----EVDPSPLEVIPAEDEIDKALWLMTLSDALDDLTPAHREV 146

Query: 131 IERSYYRGWTTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQELGVT 176
           +  +Y++G T  + A+ L I  GTV+SR+ YA+R+++L L+E GVT
Sbjct: 147 LVETYFKGRTVNEAAETLGIPSGTVRSRVFYALRSMKLALEERGVT 192


  Database: Amellifera_nr
    Posted date:  Feb 5, 2010  5:10 AM
  Number of letters in database: 3,846,993,858
  Number of sequences in database:  11,275,203
  
Lambda     K      H
   0.319    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11275203
Number of Hits to DB: 968,974,070
Number of extensions: 28066780
Number of successful extensions: 107695
Number of sequences better than 10.0: 3979
Number of HSP's gapped: 107040
Number of HSP's successfully gapped: 4079
Length of query: 177
Length of database: 3,846,993,858
Length adjustment: 128
Effective length of query: 49
Effective length of database: 2,403,767,874
Effective search space: 117784625826
Effective search space used: 117784625826
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)