BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MMAR_1090
         (347 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,275,203 sequences; 3,846,993,858 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

sp|A0PMB7|RPOA_MYCUA Tax_Id=362242 (rpoA)RecName: Full=DNA-direc...   677   0.0  
tr|B2HCX4|B2HCX4_MYCMM Tax_Id=216594 (rpoA)SubName: Full=DNA-dir...   677   0.0  
sp|P66701|RPOA_MYCTU Tax_Id=1773 (rpoA)RecName: Full=DNA-directe...   664   0.0  
sp|A5U8D3|RPOA_MYCTA Tax_Id=419947 (rpoA)RecName: Full=DNA-direc...   664   0.0  
sp|A1KPE3|RPOA_MYCBP Tax_Id=410289 (rpoA)RecName: Full=DNA-direc...   664   0.0  
sp|P66702|RPOA_MYCBO Tax_Id=1765 (rpoA)RecName: Full=DNA-directe...   664   0.0  
tr|C6DLX8|C6DLX8_MYCTK Tax_Id=478434 SubName: Full=DNA-directed ...   664   0.0  
tr|C1AHR5|C1AHR5_MYCBT Tax_Id=561275 (rpoA)SubName: Full=DNA-dir...   664   0.0  
tr|A5WT30|A5WT30_MYCTF Tax_Id=336982 SubName: Full=DNA-directed ...   664   0.0  
tr|A2VPN5|A2VPN5_MYCTU Tax_Id=348776 SubName: Full=DNA-directed ...   664   0.0  
sp|Q73S43|RPOA_MYCPA Tax_Id=1770 (rpoA)RecName: Full=DNA-directe...   661   0.0  
sp|A0QKU5|RPOA_MYCA1 Tax_Id=243243 (rpoA)RecName: Full=DNA-direc...   661   0.0  
sp|Q9X798|RPOA_MYCLE Tax_Id=1769 (rpoA)RecName: Full=DNA-directe...   654   0.0  
tr|B8ZSH6|B8ZSH6_MYCLB Tax_Id=561304 (rpoA)SubName: Full=[alpha]...   654   0.0  
sp|Q1BD08|RPOA_MYCSS Tax_Id=164756 (rpoA)RecName: Full=DNA-direc...   640   0.0  
sp|A1UBY5|RPOA_MYCSK Tax_Id=189918 (rpoA)RecName: Full=DNA-direc...   640   0.0  
sp|A3PVL8|RPOA_MYCSJ Tax_Id=164757 (rpoA)RecName: Full=DNA-direc...   640   0.0  
sp|A1T520|RPOA_MYCVP Tax_Id=350058 (rpoA)RecName: Full=DNA-direc...   637   0.0  
tr|B1MG99|B1MG99_MYCA9 Tax_Id=561007 SubName: Full=DNA-directed ...   637   0.0  
tr|A4KLY1|A4KLY1_MYCTU Tax_Id=395095 SubName: Full=DNA-directed ...   636   e-180
tr|A4TEJ3|A4TEJ3_MYCGI Tax_Id=350054 SubName: Full=DNA-directed ...   634   e-180
sp|A0QSL8|RPOA_MYCS2 Tax_Id=246196 (rpoA)RecName: Full=DNA-direc...   621   e-176
sp|Q5Z1K9|RPOA_NOCFA Tax_Id=37329 (rpoA)RecName: Full=DNA-direct...   617   e-175
tr|C2AM21|C2AM21_TSUPA Tax_Id=521096 SubName: Full=DNA-directed ...   617   e-175
tr|D0L2F2|D0L2F2_GORB4 Tax_Id=526226 SubName: Full=DNA-directed ...   614   e-174
sp|Q0S3E7|RPOA_RHOSR Tax_Id=101510 (rpoA)RecName: Full=DNA-direc...   613   e-173
tr|C1B041|C1B041_RHOOB Tax_Id=632772 (rpoA)SubName: Full=DNA-dir...   613   e-173
tr|C0ZW54|C0ZW54_RHOE4 Tax_Id=234621 (rpoA)SubName: Full=DNA-dir...   613   e-173
tr|C3JGZ6|C3JGZ6_RHOER Tax_Id=596309 (rpoA)SubName: Full=DNA-dir...   613   e-173
tr|C6WLZ6|C6WLZ6_ACTMD Tax_Id=446462 SubName: Full=DNA-directed ...   573   e-162
sp|A4FPJ2|RPOA_SACEN Tax_Id=405948 (rpoA)RecName: Full=DNA-direc...   571   e-161
tr|C7MTX5|C7MTX5_SACVD Tax_Id=471857 SubName: Full=DNA-directed ...   565   e-159
tr|C8XCL4|C8XCL4_NAKMY Tax_Id=479431 SubName: Full=DNA-directed ...   550   e-154
tr|C0U7Z0|C0U7Z0_9ACTO Tax_Id=526225 SubName: Full=DNA-directed ...   536   e-150
tr|C4ECV9|C4ECV9_STRRS Tax_Id=479432 SubName: Full=DNA-directed ...   527   e-148
tr|C7Q436|C7Q436_CATAD Tax_Id=479433 SubName: Full=DNA-directed ...   522   e-146
sp|A0LRP8|RPOA_ACIC1 Tax_Id=351607 (rpoA)RecName: Full=DNA-direc...   521   e-146
tr|A3TH07|A3TH07_9MICO Tax_Id=313589 SubName: Full=DNA-directed ...   520   e-145
tr|B5G8Q8|B5G8Q8_9ACTO Tax_Id=465543 SubName: Full=DNA-directed ...   519   e-145
tr|C4LKZ1|C4LKZ1_CORK4 Tax_Id=645127 SubName: Full=DNA-directed ...   519   e-145
tr|C1WG44|C1WG44_9ACTO Tax_Id=479435 SubName: Full=DNA-directed ...   519   e-145
sp|Q2JFE8|RPOA_FRASC Tax_Id=106370 (rpoA)RecName: Full=DNA-direc...   518   e-145
tr|D1BBS7|D1BBS7_9MICO Tax_Id=446469 SubName: Full=DNA-directed ...   518   e-145
tr|A8LB05|A8LB05_FRASN Tax_Id=298653 SubName: Full=DNA-directed ...   518   e-145
tr|C7R162|C7R162_JONDD Tax_Id=471856 SubName: Full=DNA-directed ...   518   e-145
tr|D1BWW1|D1BWW1_9MICO Tax_Id=446471 SubName: Full=DNA-directed ...   517   e-145
sp|Q0RRP3|RPOA_FRAAA Tax_Id=326424 (rpoA)RecName: Full=DNA-direc...   516   e-144
sp|B1W3Y0|RPOA_STRGG Tax_Id=455632 (rpoA)RecName: Full=DNA-direc...   515   e-144
sp|P60312|RPOA_STRCO Tax_Id=1902 (rpoA)RecName: Full=DNA-directe...   515   e-144
tr|B4V4X3|B4V4X3_9ACTO Tax_Id=465541 SubName: Full=DNA-directed ...   515   e-144

>sp|A0PMB7|RPOA_MYCUA Tax_Id=362242 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit
           alpha;[Mycobacterium ulcerans]
          Length = 347

 Score =  677 bits (1748), Expect = 0.0
 Identities = 347/347 (100%), Positives = 347/347 (100%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
           LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL
Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347


>tr|B2HCX4|B2HCX4_MYCMM Tax_Id=216594 (rpoA)SubName:
           Full=DNA-directed RNA polymerase (Alpha chain),
           RpoA;[Mycobacterium marinum]
          Length = 347

 Score =  677 bits (1748), Expect = 0.0
 Identities = 347/347 (100%), Positives = 347/347 (100%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
           LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL
Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347


>sp|P66701|RPOA_MYCTU Tax_Id=1773 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit
           alpha;[Mycobacterium tuberculosis]
          Length = 347

 Score =  664 bits (1712), Expect = 0.0
 Identities = 337/347 (97%), Positives = 345/347 (99%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSE+VLTD+RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVT+IILNLK+LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P M IATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct: 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETKNSI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
           LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYD+QDYAETEQL
Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347


>sp|A5U8D3|RPOA_MYCTA Tax_Id=419947 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit
           alpha;[Mycobacterium tuberculosis]
          Length = 347

 Score =  664 bits (1712), Expect = 0.0
 Identities = 337/347 (97%), Positives = 345/347 (99%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSE+VLTD+RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVT+IILNLK+LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P M IATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct: 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETKNSI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
           LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYD+QDYAETEQL
Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347


>sp|A1KPE3|RPOA_MYCBP Tax_Id=410289 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit
           alpha;[Mycobacterium bovis]
          Length = 347

 Score =  664 bits (1712), Expect = 0.0
 Identities = 337/347 (97%), Positives = 345/347 (99%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSE+VLTD+RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVT+IILNLK+LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P M IATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct: 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETKNSI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
           LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYD+QDYAETEQL
Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347


>sp|P66702|RPOA_MYCBO Tax_Id=1765 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit
           alpha;[Mycobacterium bovis]
          Length = 347

 Score =  664 bits (1712), Expect = 0.0
 Identities = 337/347 (97%), Positives = 345/347 (99%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSE+VLTD+RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVT+IILNLK+LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P M IATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct: 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETKNSI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
           LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYD+QDYAETEQL
Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347


>tr|C6DLX8|C6DLX8_MYCTK Tax_Id=478434 SubName: Full=DNA-directed RNA
           polymerase subunit alpha rpoA;[Mycobacterium
           tuberculosis]
          Length = 347

 Score =  664 bits (1712), Expect = 0.0
 Identities = 337/347 (97%), Positives = 345/347 (99%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSE+VLTD+RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVT+IILNLK+LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P M IATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct: 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETKNSI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
           LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYD+QDYAETEQL
Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347


>tr|C1AHR5|C1AHR5_MYCBT Tax_Id=561275 (rpoA)SubName:
           Full=DNA-directed RNA polymerase subunit alpha;
           EC=2.7.7.6;[Mycobacterium bovis]
          Length = 347

 Score =  664 bits (1712), Expect = 0.0
 Identities = 337/347 (97%), Positives = 345/347 (99%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSE+VLTD+RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVT+IILNLK+LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P M IATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct: 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETKNSI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
           LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYD+QDYAETEQL
Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347


>tr|A5WT30|A5WT30_MYCTF Tax_Id=336982 SubName: Full=DNA-directed RNA
           polymerase alpha subunit rpoA;[Mycobacterium
           tuberculosis]
          Length = 347

 Score =  664 bits (1712), Expect = 0.0
 Identities = 337/347 (97%), Positives = 345/347 (99%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSE+VLTD+RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVT+IILNLK+LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P M IATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct: 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETKNSI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
           LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYD+QDYAETEQL
Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347


>tr|A2VPN5|A2VPN5_MYCTU Tax_Id=348776 SubName: Full=DNA-directed RNA
           polymerase (Alpha chain) rpoA;[Mycobacterium
           tuberculosis C]
          Length = 347

 Score =  664 bits (1712), Expect = 0.0
 Identities = 337/347 (97%), Positives = 345/347 (99%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSE+VLTD+RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEDVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVT+IILNLK+LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTEIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P M IATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct: 121 PGMHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETKNSI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
           LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYD+QDYAETEQL
Sbjct: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 347


>sp|Q73S43|RPOA_MYCPA Tax_Id=1770 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit
           alpha;[Mycobacterium paratuberculosis]
          Length = 347

 Score =  661 bits (1706), Expect = 0.0
 Identities = 338/347 (97%), Positives = 343/347 (98%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSEEVLTD+RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEEVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVT IILNLK+LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTAIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P + IATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct: 121 PELHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETK+SITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
           LHQLGLSLKDSPPSFDPS+VAGYDVATGTWSTE AYDDQDYAETEQL
Sbjct: 301 LHQLGLSLKDSPPSFDPSQVAGYDVATGTWSTEAAYDDQDYAETEQL 347


>sp|A0QKU5|RPOA_MYCA1 Tax_Id=243243 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit
           alpha;[Mycobacterium avium]
          Length = 347

 Score =  661 bits (1706), Expect = 0.0
 Identities = 338/347 (97%), Positives = 343/347 (98%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSEEVLTD+RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEEVLTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVT IILNLK+LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTAIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P + IATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct: 121 PELHIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETK+SITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
           LHQLGLSLKDSPPSFDPS+VAGYDVATGTWSTE AYDDQDYAETEQL
Sbjct: 301 LHQLGLSLKDSPPSFDPSQVAGYDVATGTWSTEAAYDDQDYAETEQL 347


>sp|Q9X798|RPOA_MYCLE Tax_Id=1769 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit
           alpha;[Mycobacterium leprae]
          Length = 347

 Score =  654 bits (1686), Expect = 0.0
 Identities = 332/347 (95%), Positives = 340/347 (97%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSE++LTD+RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN
Sbjct: 61  HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P MRIATLNDKGK+E ELVVERGRGYVPAVQNRA GAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETK+SITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
           LHQLGLSLKDSP SFDPSEVAGYDV TGTWST+GAYD QDYAETEQL
Sbjct: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347


>tr|B8ZSH6|B8ZSH6_MYCLB Tax_Id=561304 (rpoA)SubName: Full=[alpha]
           subunit of RNA polymerase;[Mycobacterium leprae]
          Length = 347

 Score =  654 bits (1686), Expect = 0.0
 Identities = 332/347 (95%), Positives = 340/347 (97%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSE++LTD+RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEDILTDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVT+IILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVT+HN
Sbjct: 61  HEFTTVPGVKEDVTEIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTLHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P MRIATLNDKGK+E ELVVERGRGYVPAVQNRA GAEIGRIPVDSIYSPVLKVTYKVDA
Sbjct: 121 PGMRIATLNDKGKIEAELVVERGRGYVPAVQNRALGAEIGRIPVDSIYSPVLKVTYKVDA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETK+SITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKSSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
           LHQLGLSLKDSP SFDPSEVAGYDV TGTWST+GAYD QDYAETEQL
Sbjct: 301 LHQLGLSLKDSPDSFDPSEVAGYDVTTGTWSTDGAYDSQDYAETEQL 347


>sp|Q1BD08|RPOA_MYCSS Tax_Id=164756 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit
           alpha;[Mycobacterium sp.]
          Length = 350

 Score =  640 bits (1650), Expect = 0.0
 Identities = 326/350 (93%), Positives = 339/350 (96%), Gaps = 3/350 (0%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSEE + D+RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEETVADNRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILNLK+LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTDIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P M IATLNDKGKLEVELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PEMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAY---DDQDYAETEQL 347
           LHQLGLSLKDSP +FDPSEVAGYD ATGTW+++  Y   D+QDYAETEQL
Sbjct: 301 LHQLGLSLKDSPATFDPSEVAGYDAATGTWNSDAGYDLEDNQDYAETEQL 350


>sp|A1UBY5|RPOA_MYCSK Tax_Id=189918 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit
           alpha;[Mycobacterium sp.]
          Length = 350

 Score =  640 bits (1650), Expect = 0.0
 Identities = 326/350 (93%), Positives = 339/350 (96%), Gaps = 3/350 (0%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSEE + D+RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEETVADNRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILNLK+LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTDIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P M IATLNDKGKLEVELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PEMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAY---DDQDYAETEQL 347
           LHQLGLSLKDSP +FDPSEVAGYD ATGTW+++  Y   D+QDYAETEQL
Sbjct: 301 LHQLGLSLKDSPATFDPSEVAGYDAATGTWNSDAGYDLEDNQDYAETEQL 350


>sp|A3PVL8|RPOA_MYCSJ Tax_Id=164757 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit
           alpha;[Mycobacterium sp.]
          Length = 350

 Score =  640 bits (1650), Expect = 0.0
 Identities = 326/350 (93%), Positives = 339/350 (96%), Gaps = 3/350 (0%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSEE + D+RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEETVADNRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILNLK+LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTDIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P M IATLNDKGKLEVELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PEMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAY---DDQDYAETEQL 347
           LHQLGLSLKDSP +FDPSEVAGYD ATGTW+++  Y   D+QDYAETEQL
Sbjct: 301 LHQLGLSLKDSPATFDPSEVAGYDAATGTWNSDAGYDLEDNQDYAETEQL 350


>sp|A1T520|RPOA_MYCVP Tax_Id=350058 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit
           alpha;[Mycobacterium vanbaalenii]
          Length = 350

 Score =  637 bits (1643), Expect = 0.0
 Identities = 326/350 (93%), Positives = 338/350 (96%), Gaps = 3/350 (0%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSE+VL ++RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEDVLAENRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P+M IATLNDKGKLEVELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PDMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           AD  A FALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct: 241 ADQAAHFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAY---DDQDYAETEQL 347
           LHQLGLSLKDSP SFDPSEVAGYDVATGTW+++  Y   D+QDYAETEQL
Sbjct: 301 LHQLGLSLKDSPASFDPSEVAGYDVATGTWNSDAGYDLEDNQDYAETEQL 350


>tr|B1MG99|B1MG99_MYCA9 Tax_Id=561007 SubName: Full=DNA-directed RNA
           polymerase alpha chain RpoA;[Mycobacterium abscessus]
          Length = 350

 Score =  637 bits (1642), Expect = 0.0
 Identities = 324/350 (92%), Positives = 339/350 (96%), Gaps = 3/350 (0%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSEE L ++RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEETLAENRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILNLK+LVVSSEEDEPVTMYLRKQGPG VTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTDIILNLKSLVVSSEEDEPVTMYLRKQGPGAVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P+M IATLNDKGKLE+ELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTY V+A
Sbjct: 121 PDMHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYNVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKL+LDVETKNSI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLVLDVETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPI+DLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct: 241 ADHIASFALPIEDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYD---DQDYAETEQL 347
           LHQLGLSLKDSP SFDPSEVAGYDVATGTWS  G+YD   DQD+AETEQL
Sbjct: 301 LHQLGLSLKDSPTSFDPSEVAGYDVATGTWSDTGSYDFDGDQDFAETEQL 350


>tr|A4KLY1|A4KLY1_MYCTU Tax_Id=395095 SubName: Full=DNA-directed RNA
           polymerase (Alpha chain) rpoA;[Mycobacterium
           tuberculosis str. Haarlem]
          Length = 348

 Score =  636 bits (1641), Expect = e-180
 Identities = 322/332 (96%), Positives = 330/332 (99%)

Query: 16  DSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTD 75
           ++RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVT+
Sbjct: 17  ETRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVLHEFTTVPGVKEDVTE 76

Query: 76  IILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHNPNMRIATLNDKGKLE 135
           IILNLK+LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHNP M IATLNDKGKLE
Sbjct: 77  IILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHNPGMHIATLNDKGKLE 136

Query: 136 VELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDATRVEQRTDFDKLILD 195
           VELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDATRVEQRTDFDKLILD
Sbjct: 137 VELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDATRVEQRTDFDKLILD 196

Query: 196 VETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAEADHIASFALPIDDLD 255
           VETKNSI+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAEADHIASFALPIDDLD
Sbjct: 197 VETKNSISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAEADHIASFALPIDDLD 256

Query: 256 LTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVKLHQLGLSLKDSPPSF 315
           LTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+KLHQLGLSLKDSPPSF
Sbjct: 257 LTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIKLHQLGLSLKDSPPSF 316

Query: 316 DPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
           DPSEVAGYDVATGTWSTEGAYD+QDYAETEQL
Sbjct: 317 DPSEVAGYDVATGTWSTEGAYDEQDYAETEQL 348


>tr|A4TEJ3|A4TEJ3_MYCGI Tax_Id=350054 SubName: Full=DNA-directed RNA
           polymerase, alpha subunit; EC=2.7.7.6;[Mycobacterium
           gilvum]
          Length = 354

 Score =  634 bits (1634), Expect = e-180
 Identities = 324/354 (91%), Positives = 338/354 (95%), Gaps = 7/354 (1%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSEEV+ ++RSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEEVVAENRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILNLK LVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P+M IATLNDKGKLEVELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PDMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETKNSI+PRDALASAGKTLVELFGLARELN+EAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKNSISPRDALASAGKTLVELFGLARELNIEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           AD  A FALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct: 241 ADQAAHFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAY-------DDQDYAETEQL 347
           LHQLGLSLKDSP SFDPSEVAGYDVATGTW+++  Y       D+QDYAETEQL
Sbjct: 301 LHQLGLSLKDSPASFDPSEVAGYDVATGTWNSDAGYDSGYEADDNQDYAETEQL 354


>sp|A0QSL8|RPOA_MYCS2 Tax_Id=246196 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit
           alpha;[Mycobacterium smegmatis]
          Length = 350

 Score =  621 bits (1602), Expect = e-176
 Identities = 315/350 (90%), Positives = 335/350 (95%), Gaps = 3/350 (0%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSEE + ++RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEETVAENRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILNLK LVVSS++DEPVTMYLRKQGPG VTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTDIILNLKGLVVSSDDDEPVTMYLRKQGPGVVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P+M IATLNDKGKLEVELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PDMHIATLNDKGKLEVELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLI+DVETKNSI+PRDALASAG TLVELFGLARELN ++E IEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLIIDVETKNSISPRDALASAGGTLVELFGLARELNADSEHIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVK+K
Sbjct: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKIK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAY---DDQDYAETEQL 347
           LHQLGLSLKDSP +FDPSEVAGYD ATGTW+++  Y   D+QDYAETEQL
Sbjct: 301 LHQLGLSLKDSPATFDPSEVAGYDAATGTWTSDAGYDLDDNQDYAETEQL 350


>sp|Q5Z1K9|RPOA_NOCFA Tax_Id=37329 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit alpha;[Nocardia
           farcinica]
          Length = 352

 Score =  617 bits (1590), Expect = e-175
 Identities = 314/352 (89%), Positives = 330/352 (93%), Gaps = 5/352 (1%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTL+EEV+ ++RS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLTEEVIAENRSKFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILNLK LVVSSEEDEPVTMY+RKQGPG VTAGDIVPPAGV VHN
Sbjct: 61  HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYVRKQGPGTVTAGDIVPPAGVVVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P+M IATLNDKGKLE+ELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PDMHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFD+LILDVETKNSI+ RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDRLILDVETKNSISARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASF LPI+DLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVKVK
Sbjct: 241 ADHIASFGLPIEDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKVK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDD-----QDYAETEQL 347
           LH LGLSLKDSP SFDPS V GYD +TGTWS  G + D     QDYAETEQL
Sbjct: 301 LHALGLSLKDSPASFDPSSVVGYDASTGTWSDSGTFSDNDGGEQDYAETEQL 352


>tr|C2AM21|C2AM21_TSUPA Tax_Id=521096 SubName: Full=DNA-directed RNA
           polymerase subunit alpha; EC=2.7.7.6;[Tsukamurella
           paurometabola DSM 20162]
          Length = 352

 Score =  617 bits (1590), Expect = e-175
 Identities = 314/352 (89%), Positives = 335/352 (95%), Gaps = 5/352 (1%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSEEV++D+RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEEVISDARSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILNLK LVVSSE+DEPVTMY+RKQGPG VTAGDIVPPA VTVHN
Sbjct: 61  HEFTTVPGVKEDVTDIILNLKGLVVSSEDDEPVTMYVRKQGPGAVTAGDIVPPASVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ IATLNDKGKLE+ELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFD+LILDVETKNS+T RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDRLILDVETKNSMTARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIA+F+LPI+DLDLTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVKVK
Sbjct: 241 ADHIAAFSLPIEDLDLTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKVK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYD-----DQDYAETEQL 347
           LH LGL+LKDSP SFDPS+V GYD ATGTWS E ++      DQDYAETEQL
Sbjct: 301 LHALGLALKDSPASFDPSQVDGYDPATGTWSDEPSFSGDADGDQDYAETEQL 352


>tr|D0L2F2|D0L2F2_GORB4 Tax_Id=526226 SubName: Full=DNA-directed RNA
           polymerase, alpha subunit;[Gordonia bronchialis]
          Length = 350

 Score =  614 bits (1584), Expect = e-174
 Identities = 310/350 (88%), Positives = 334/350 (95%), Gaps = 3/350 (0%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTL+EE+L D+RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAA+TSIRIDGVL
Sbjct: 1   MLISQRPTLTEEILADNRSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAITSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILNLK LVVSSEEDEPVTMY+RKQGPG VT  DIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYVRKQGPGTVTGADIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ IATLNDKGKLE+ELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFD+L+LDVETKNSI+ RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDRLVLDVETKNSISARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASF+LPI+DL+LTVRSYNCLKREGVHTVGELV+RTESDLLDIRNFGQKSIDEVKVK
Sbjct: 241 ADHIASFSLPIEDLELTVRSYNCLKREGVHTVGELVARTESDLLDIRNFGQKSIDEVKVK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYD---DQDYAETEQL 347
           LH LGLSLKDSP SFDPS+VAGYD ATGTWS + ++D    +D+AETEQL
Sbjct: 301 LHALGLSLKDSPASFDPSQVAGYDPATGTWSDDASFDADSGEDFAETEQL 350


>sp|Q0S3E7|RPOA_RHOSR Tax_Id=101510 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit alpha;[Rhodococcus
           sp.]
          Length = 353

 Score =  613 bits (1580), Expect = e-173
 Identities = 314/353 (88%), Positives = 333/353 (94%), Gaps = 6/353 (1%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTL+EEV+ D+RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLTEEVIADNRSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILNLK LVVSSEEDEPVTMY+RKQGPG VTAGDIVPPAGVTV+N
Sbjct: 61  HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYVRKQGPGAVTAGDIVPPAGVTVNN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ IATLNDKGKLE+ELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFD+L+LDVETKNSIT RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDRLVLDVETKNSITARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASF LPI+DLDLTVRSYNCLKREGVHTVGELV RTESDLLDIRNFGQKSIDEVKVK
Sbjct: 241 ADHIASFGLPIEDLDLTVRSYNCLKREGVHTVGELVGRTESDLLDIRNFGQKSIDEVKVK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWS--TEGAYDD----QDYAETEQL 347
           LH LGL+LKDSP SFDP+ VAGYD ATGTWS    G++ D    +DYAETEQL
Sbjct: 301 LHSLGLALKDSPASFDPTTVAGYDAATGTWSDTDAGSFGDAEGTEDYAETEQL 353


>tr|C1B041|C1B041_RHOOB Tax_Id=632772 (rpoA)SubName:
           Full=DNA-directed RNA polymerase alpha subunit;
           EC=2.7.7.6;[Rhodococcus opacus]
          Length = 353

 Score =  613 bits (1580), Expect = e-173
 Identities = 314/353 (88%), Positives = 333/353 (94%), Gaps = 6/353 (1%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTL+EEV+ D+RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLTEEVIADNRSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILNLK LVVSSEEDEPVTMY+RKQGPG VTAGDIVPPAGVTV+N
Sbjct: 61  HEFTTVPGVKEDVTDIILNLKGLVVSSEEDEPVTMYVRKQGPGAVTAGDIVPPAGVTVNN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ IATLNDKGKLE+ELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFD+L+LDVETKNSIT RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDRLVLDVETKNSITARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASF LPI+DLDLTVRSYNCLKREGVHTVGELV RTESDLLDIRNFGQKSIDEVKVK
Sbjct: 241 ADHIASFGLPIEDLDLTVRSYNCLKREGVHTVGELVGRTESDLLDIRNFGQKSIDEVKVK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWS--TEGAYDD----QDYAETEQL 347
           LH LGL+LKDSP SFDP+ VAGYD ATGTWS    G++ D    +DYAETEQL
Sbjct: 301 LHSLGLALKDSPASFDPTTVAGYDAATGTWSDTDAGSFGDAEGTEDYAETEQL 353


>tr|C0ZW54|C0ZW54_RHOE4 Tax_Id=234621 (rpoA)SubName:
           Full=DNA-directed RNA polymerase alpha chain;
           EC=2.7.7.6;[Rhodococcus erythropolis]
          Length = 353

 Score =  613 bits (1580), Expect = e-173
 Identities = 314/353 (88%), Positives = 333/353 (94%), Gaps = 6/353 (1%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTL+EEV+ D+RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLTEEVIADNRSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILNLK LVV+SEEDEPVTMY+RKQGPG VTAGDIVPPAGVTV+N
Sbjct: 61  HEFTTVPGVKEDVTDIILNLKGLVVNSEEDEPVTMYVRKQGPGAVTAGDIVPPAGVTVNN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ IATLNDKGKLE+ELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFD+L+LDVETKNSIT RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDRLVLDVETKNSITARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASF LPI+DLDLTVRSYNCLKREGVHTVGELV RTESDLLDIRNFGQKSIDEVKVK
Sbjct: 241 ADHIASFGLPIEDLDLTVRSYNCLKREGVHTVGELVGRTESDLLDIRNFGQKSIDEVKVK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWS--TEGAYDD----QDYAETEQL 347
           LH LGLSLKDSP SFDP+ VAGYD ATGTWS    G++ D    +DYAETEQL
Sbjct: 301 LHSLGLSLKDSPASFDPTTVAGYDAATGTWSDTDAGSFGDAEGTEDYAETEQL 353


>tr|C3JGZ6|C3JGZ6_RHOER Tax_Id=596309 (rpoA)SubName:
           Full=DNA-directed RNA polymerase, alpha subunit;
           EC=2.7.7.6;[Rhodococcus erythropolis SK121]
          Length = 353

 Score =  613 bits (1580), Expect = e-173
 Identities = 314/353 (88%), Positives = 333/353 (94%), Gaps = 6/353 (1%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTL+EEV+ D+RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLTEEVIADNRSKFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILNLK LVV+SEEDEPVTMY+RKQGPG VTAGDIVPPAGVTV+N
Sbjct: 61  HEFTTVPGVKEDVTDIILNLKGLVVNSEEDEPVTMYVRKQGPGAVTAGDIVPPAGVTVNN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ IATLNDKGKLE+ELVVERGRGYVPAVQN+ASGAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PDLHIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFD+L+LDVETKNSIT RDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDRLVLDVETKNSITARDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIASF LPI+DLDLTVRSYNCLKREGVHTVGELV RTESDLLDIRNFGQKSIDEVKVK
Sbjct: 241 ADHIASFGLPIEDLDLTVRSYNCLKREGVHTVGELVGRTESDLLDIRNFGQKSIDEVKVK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWS--TEGAYDD----QDYAETEQL 347
           LH LGLSLKDSP SFDP+ VAGYD ATGTWS    G++ D    +DYAETEQL
Sbjct: 301 LHSLGLSLKDSPASFDPTTVAGYDAATGTWSDTDAGSFGDAEGTEDYAETEQL 353


>tr|C6WLZ6|C6WLZ6_ACTMD Tax_Id=446462 SubName: Full=DNA-directed RNA
           polymerase, alpha subunit;[Actinosynnema mirum]
          Length = 350

 Score =  573 bits (1478), Expect = e-162
 Identities = 295/351 (84%), Positives = 322/351 (91%), Gaps = 5/351 (1%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRP+LSEE ++++RS+FVIEPLEPGFGYTLGNS+RRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPSLSEEAVSETRSRFVIEPLEPGFGYTLGNSIRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILNLK LVVSSEEDEPVTMYLRKQGPG VTAGDIVPPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDVTDIILNLKELVVSSEEDEPVTMYLRKQGPGAVTAGDIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ IATLN KGKLE+ELVVERGRGYVPAVQN+ +GAEIGRIPVDSIYSPV+KVTYKV+A
Sbjct: 121 PDLHIATLNGKGKLEIELVVERGRGYVPAVQNKQAGAEIGRIPVDSIYSPVMKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVE+K SITPRDA+ASAGKTLVELFGLARELNV+AEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVESKPSITPRDAVASAGKTLVELFGLARELNVDAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           AD IA+FA+PI+DLDLTVRSYNCLKREG+HTVGELVSR+E+DLLDIRNFG KSIDEVK+K
Sbjct: 241 ADTIAAFAMPIEDLDLTVRSYNCLKREGIHTVGELVSRSEADLLDIRNFGAKSIDEVKMK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDD----QDYAETEQL 347
           L  LGL+LKDSPP FDPS  A    A G W  + + D     QDYAETEQL
Sbjct: 301 LVGLGLALKDSPPGFDPSAAASDYPAEG-WGADSSVDSHDDGQDYAETEQL 350


>sp|A4FPJ2|RPOA_SACEN Tax_Id=405948 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit
           alpha;[Saccharopolyspora erythraea]
          Length = 359

 Score =  571 bits (1471), Expect = e-161
 Identities = 295/360 (81%), Positives = 324/360 (90%), Gaps = 14/360 (3%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRP+L+EE + ++RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTS+RIDGVL
Sbjct: 1   MLISQRPSLAEEAVAETRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSLRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTT+PGVKEDVTD+ILNLK LVVSSEEDEPVTMYLRKQGPGEVTA DIVPPAGVTVHN
Sbjct: 61  HEFTTIPGVKEDVTDVILNLKELVVSSEEDEPVTMYLRKQGPGEVTAADIVPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ IATLN KGKLE+ELVVERGRGYVPAVQN+ +GAEIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PDLHIATLNGKGKLEIELVVERGRGYVPAVQNKQTGAEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLILDVETK SITPRDA+ASAG+TLVELFGLARELNV+AEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLILDVETKPSITPRDAVASAGRTLVELFGLARELNVDAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           AD IA++A+PI+DLDLTVRSYNCLKREG+HTVGELVSR+E+DLLDIRNFG KSIDEVK+K
Sbjct: 241 ADTIAAYAMPIEDLDLTVRSYNCLKREGIHTVGELVSRSEADLLDIRNFGAKSIDEVKLK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTE------------GAYDD-QDYAETEQL 347
           L  LGLSLKDSPP FDPS  A    + G W++E              YDD QDYAETEQL
Sbjct: 301 LVGLGLSLKDSPPGFDPSAAAAEYPSEG-WASETETVGGLGRVEDNGYDDGQDYAETEQL 359


>tr|C7MTX5|C7MTX5_SACVD Tax_Id=471857 SubName: Full=DNA-directed RNA
           polymerase subunit alpha;[Saccharomonospora viridis]
          Length = 358

 Score =  565 bits (1456), Expect = e-159
 Identities = 290/358 (81%), Positives = 319/358 (89%), Gaps = 11/358 (3%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRPTLSEE + ++RS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLISQRPTLSEETVNETRSRFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEF+TVPGVKEDVT+IILNLK LVVSSEEDEPVTMYLRKQGPGEVTA DIVPP+GVTVHN
Sbjct: 61  HEFSTVPGVKEDVTEIILNLKELVVSSEEDEPVTMYLRKQGPGEVTAADIVPPSGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ IA+LN KGKLE+ELVVERGRGYVPA+QN+ +GAEIGRIP+DSIYSPVLKVTYKV+A
Sbjct: 121 PDLHIASLNGKGKLEIELVVERGRGYVPALQNKQAGAEIGRIPIDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKL+LDVETK SITPRDA+ASAGKTLVELFGLARELNV+AEGIEIGPSP E
Sbjct: 181 TRVEQRTDFDKLVLDVETKPSITPRDAVASAGKTLVELFGLARELNVDAEGIEIGPSPQE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           AD IA++A+PI+DLDLTVRSYNCLKREG+HTVGELVSR+E+DLLDIRNFG KSIDEVK+K
Sbjct: 241 ADTIAAYAMPIEDLDLTVRSYNCLKREGIHTVGELVSRSEADLLDIRNFGAKSIDEVKMK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAY-----------DDQDYAETEQL 347
           L  LGL+LKDSPP FDP+  A      GT  T GA            D QDYAETEQL
Sbjct: 301 LAGLGLTLKDSPPGFDPTAAASTYGGAGTSQTWGAQPSTGLPDTGHDDGQDYAETEQL 358


>tr|C8XCL4|C8XCL4_NAKMY Tax_Id=479431 SubName: Full=DNA-directed RNA
           polymerase, alpha subunit;[Nakamurella multipartita]
          Length = 360

 Score =  550 bits (1416), Expect = e-154
 Identities = 280/362 (77%), Positives = 314/362 (86%), Gaps = 17/362 (4%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRP+L+EE + D+RS+F+IEPLEPGFGYTLGNSLRRTLLSSIPGA+VTSIR+DGVL
Sbjct: 1   MLISQRPSLTEEPVADNRSRFIIEPLEPGFGYTLGNSLRRTLLSSIPGASVTSIRVDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKED+T++ILNLK LVVSSE+DEPVTMYLRKQGPG+VTA DI PPAGVTVHN
Sbjct: 61  HEFTTVPGVKEDITELILNLKELVVSSEDDEPVTMYLRKQGPGDVTAADIAPPAGVTVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
            ++++ATL  KGKLE+ELVVERGRGYVPA  N+  GAEIGRIPVDSIYSPVLKVTY+V+A
Sbjct: 121 SDLKLATLTKKGKLEIELVVERGRGYVPASPNKVVGAEIGRIPVDSIYSPVLKVTYRVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKL+LDVETK SITPRDALASAG TLVELFGLARELNV+AEGIEIGPSPAE
Sbjct: 181 TRVEQRTDFDKLVLDVETKPSITPRDALASAGTTLVELFGLARELNVDAEGIEIGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ADHIA+F LPI+++DLTVRSYNCLKREG+HTVGELVSRTE+DLLDIRNFGQKSIDEVK+K
Sbjct: 241 ADHIAAFGLPIEEMDLTVRSYNCLKREGIHTVGELVSRTEADLLDIRNFGQKSIDEVKIK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVA---------------GYDVATGTWSTEGAYDDQDYAETE 345
           L  +GL+LKDSP  FDP+  A               GY    G   T    DD DYAETE
Sbjct: 301 LAGMGLALKDSPAGFDPAAAALSYGDTDWNDDTDDSGYGSLAGLGGT--PQDDTDYAETE 358

Query: 346 QL 347
           Q+
Sbjct: 359 QI 360


>tr|C0U7Z0|C0U7Z0_9ACTO Tax_Id=526225 SubName: Full=DNA-directed RNA
           polymerase subunit alpha; EC=2.7.7.6;[Geodermatophilus
           obscurus DSM 43160]
          Length = 358

 Score =  536 bits (1382), Expect = e-150
 Identities = 272/358 (75%), Positives = 307/358 (85%), Gaps = 11/358 (3%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLI+QRPTL+EE +++ RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRI+G L
Sbjct: 1   MLIAQRPTLTEETISEQRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIEGTL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVT+IILNLK LVVSS+ DEPVTMYLRKQGPGEVTA DI PPAGV VHN
Sbjct: 61  HEFTTVPGVKEDVTEIILNLKGLVVSSDSDEPVTMYLRKQGPGEVTAADIAPPAGVEVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P + IATLN KG+LE+ELVVERGRGYVPA QN+  G EIGRIPVDSIYSPVLKVTY V+A
Sbjct: 121 PELHIATLNGKGRLEIELVVERGRGYVPAPQNKQPGQEIGRIPVDSIYSPVLKVTYAVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFD+L++DVETK SI PRDA+ASAG TLVELFGL RELN++AEGIE+GPSPAE
Sbjct: 181 TRVEQRTDFDRLVVDVETKPSIAPRDAIASAGSTLVELFGLLRELNIDAEGIEVGPSPAE 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           A  IA+F++PI+D+DLTVRSYNCLKREGVHTVGELV+R+E+DLLDIRNFG KSIDEVK+K
Sbjct: 241 AADIANFSMPIEDMDLTVRSYNCLKREGVHTVGELVTRSEADLLDIRNFGAKSIDEVKMK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEG-----------AYDDQDYAETEQL 347
           L  +GL+LKDSPP F P+ V  YD    T + +G            YDD  Y ETEQL
Sbjct: 301 LAAMGLALKDSPPGFIPTSVESYDEGYETDAYQGHGEFAAGYDQVQYDDGTYQETEQL 358


>tr|C4ECV9|C4ECV9_STRRS Tax_Id=479432 SubName: Full=DNA-directed RNA
           polymerase subunit alpha; EC=2.7.7.6;[Streptosporangium
           roseum DSM 43021]
          Length = 357

 Score =  527 bits (1357), Expect = e-148
 Identities = 271/348 (77%), Positives = 299/348 (85%), Gaps = 13/348 (3%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLI+QRPTL EE L ++RS+F+IEPLEPGFGYT+GNSLRRTLLSSIPGAAVTSIRI+GVL
Sbjct: 20  MLIAQRPTLLEESLEETRSKFIIEPLEPGFGYTIGNSLRRTLLSSIPGAAVTSIRIEGVL 79

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEF+TVPGVKEDVTDIILNLK LVVSSE DEPV MYLRKQGPGEVTA DI PPAGV VHN
Sbjct: 80  HEFSTVPGVKEDVTDIILNLKELVVSSEHDEPVVMYLRKQGPGEVTAADIAPPAGVEVHN 139

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P +RIATLN K KLE+EL VERGRGYV A QN+  G EIGRIP+DSIYSPVLKVTYKV+A
Sbjct: 140 PELRIATLNGKAKLEMELTVERGRGYVSAAQNKQPGQEIGRIPIDSIYSPVLKVTYKVEA 199

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFD+LILDVETK  + PRDA+ASAGKTLVELFGLARELNVEAEGI+IGPSP +
Sbjct: 200 TRVEQRTDFDRLILDVETKPCMKPRDAVASAGKTLVELFGLARELNVEAEGIDIGPSPTD 259

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           A   A  ALPI++L+LTVRSYNCLKREG+HTVGELV+R+E DLLDIRNFG KSI+EVK K
Sbjct: 260 AALAADLALPIEELNLTVRSYNCLKREGIHTVGELVARSEQDLLDIRNFGAKSIEEVKQK 319

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQD--YAETEQ 346
           LH++ L+LKDSPP FDPS VAG           G YDD D  Y ETEQ
Sbjct: 320 LHEMTLALKDSPPGFDPSAVAG-----------GGYDDDDSAYVETEQ 356


>tr|C7Q436|C7Q436_CATAD Tax_Id=479433 SubName: Full=DNA-directed RNA
           polymerase, alpha subunit;[Catenulispora acidiphila]
          Length = 341

 Score =  522 bits (1344), Expect = e-146
 Identities = 266/352 (75%), Positives = 303/352 (86%), Gaps = 16/352 (4%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLI+QRPTL+EE++ + RS+F+IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLIAQRPTLTEEIIDEYRSRFLIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTT+PGVKEDVTD+ILN+K LVVSSE DEPVTMYLRKQGPG VTA DI PPAGV VHN
Sbjct: 61  HEFTTIPGVKEDVTDLILNIKQLVVSSEIDEPVTMYLRKQGPGTVTAADIAPPAGVEVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P + IATLN KGKLE+EL VERGRGYV AVQN+ +G EIGRIP+DSIYSPVLKV Y V+A
Sbjct: 121 PELIIATLNGKGKLEMELTVERGRGYVSAVQNKQAGQEIGRIPIDSIYSPVLKVKYDVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFD+L+LDVETK S+ PRDA+ASAGKTLVELFGLARELN+EAEGI++GPSP +
Sbjct: 181 TRVEQRTDFDRLVLDVETKQSMRPRDAVASAGKTLVELFGLARELNIEAEGIDMGPSPTD 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           A   A  ALPI+DL+LTVRSYNCLKREG+HTVGELV+R+E+DLLDIRNFG KSIDEVKVK
Sbjct: 241 AALAADLALPIEDLELTVRSYNCLKREGIHTVGELVARSEADLLDIRNFGAKSIDEVKVK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQD-----YAETEQL 347
           L  +GL+LKDSPP FDPS V            +  YD+++     YAETE+L
Sbjct: 301 LMSMGLALKDSPPGFDPSLV-----------VDNQYDEEEDLDSGYAETEEL 341


>sp|A0LRP8|RPOA_ACIC1 Tax_Id=351607 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit alpha;[Acidothermus
           cellulolyticus]
          Length = 341

 Score =  521 bits (1341), Expect = e-146
 Identities = 263/347 (75%), Positives = 303/347 (87%), Gaps = 6/347 (1%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLI+QRPT++EE + D+RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTS+RIDGVL
Sbjct: 1   MLIAQRPTITEEPVHDTRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSLRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEF+TVPG KEDVT++ILN+K LVVSSE D+P  +YLRKQGP EVTA DIV PAGV VHN
Sbjct: 61  HEFSTVPGAKEDVTEMILNIKELVVSSEHDDPQVIYLRKQGPCEVTAADIVAPAGVEVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ IATLNDKGKLE+E+VVERGRGYVPA QN+  G EIGRIP+DSIYSPVLKVTYKV+A
Sbjct: 121 PDLHIATLNDKGKLEIEMVVERGRGYVPAAQNKLPGHEIGRIPIDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFD+LI+DVETK S+ PRDA+ASAGKTLVELFGL RELNV+AEGI+IGPSP++
Sbjct: 181 TRVEQRTDFDRLIMDVETKPSMRPRDAMASAGKTLVELFGLVRELNVDAEGIDIGPSPSD 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           A   A  ALPI+DL+LTVRSYNCLKREG+HTVGELV+R+E+DLLDIRNFGQKSI+EVK K
Sbjct: 241 AALAADLALPIEDLNLTVRSYNCLKREGIHTVGELVARSEADLLDIRNFGQKSIEEVKTK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
           L ++GLSLKDSPP FDP  V  Y  +   +      +DQ Y ETEQL
Sbjct: 301 LAEMGLSLKDSPPGFDPGRVV-YSASRSDYD-----EDQRYIETEQL 341


>tr|A3TH07|A3TH07_9MICO Tax_Id=313589 SubName: Full=DNA-directed RNA
           polymerase alpha subunit; EC=2.7.7.6;[Janibacter sp.
           HTCC2649]
          Length = 346

 Score =  520 bits (1338), Expect = e-145
 Identities = 263/347 (75%), Positives = 299/347 (86%), Gaps = 1/347 (0%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLI+QRP L+E+V+++ RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLIAQRPILTEDVVSEHRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEF+T+PGVKEDVT+IILN+K LVVSSE DEPV MYLRKQG G VTA DI PPAGV V N
Sbjct: 61  HEFSTIPGVKEDVTEIILNIKGLVVSSEHDEPVVMYLRKQGSGAVTAADIAPPAGVEVIN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ IATLNDKG +E+EL VERGRGYV A QN++   EIGRIPVDSIYSPVL VTYKV+ 
Sbjct: 121 PDLHIATLNDKGSIEMELTVERGRGYVSAQQNKSGDQEIGRIPVDSIYSPVLNVTYKVEL 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDF+ L+LDVETK ++TPRDALASAGKTLVELFGLARELNVEAEGI++GPSP +
Sbjct: 181 TRVEQRTDFNSLVLDVETKQAVTPRDALASAGKTLVELFGLARELNVEAEGIDMGPSPTD 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           A   A  ALPI+DLDLTVRSYNCLKREG+HTVGELV R+E+DLLDIRNFGQKSIDEVK K
Sbjct: 241 AALAADLALPIEDLDLTVRSYNCLKREGIHTVGELVGRSEADLLDIRNFGQKSIDEVKAK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQL 347
           LH +GL+LKDSP  FDPS++A YD        + A +D  +AE EQL
Sbjct: 301 LHGMGLALKDSPAGFDPSQIASYDDEFSFADADDA-EDASFAEDEQL 346


>tr|B5G8Q8|B5G8Q8_9ACTO Tax_Id=465543 SubName: Full=DNA-directed RNA
           polymerase subunit alpha;[Streptomyces sp. SPB74]
          Length = 340

 Score =  519 bits (1337), Expect = e-145
 Identities = 267/348 (76%), Positives = 302/348 (86%), Gaps = 11/348 (3%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLI+QRP+L+EEV+ + RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLIAQRPSLTEEVVDEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTD+ILN+K LVVSSE DEPV MYLRKQGPG VTA DI PPAGV VHN
Sbjct: 61  HEFTTVPGVKEDVTDLILNIKQLVVSSEHDEPVVMYLRKQGPGVVTAADIAPPAGVEVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ +ATLN KGKLE+EL VERGRGYV AVQN+ +G EIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PDLVLATLNAKGKLELELTVERGRGYVSAVQNKQAGQEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLI+DVETK ++ PRDA+ASAGKTLVELFGLARELNV+AEGI++GPSP +
Sbjct: 181 TRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLARELNVDAEGIDMGPSPTD 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           A   A  ALPI++L+LTVRSYNCLKREG+H+VGELV+R+E+DLLDIRNFG KSIDEVK K
Sbjct: 241 AALAADLALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSIDEVKAK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQD--YAETEQ 346
           L  +GL+LKDSPP FDP+  A          T GA DD D  + ETEQ
Sbjct: 301 LAGMGLALKDSPPGFDPTSAA---------DTFGADDDADAGFVETEQ 339


>tr|C4LKZ1|C4LKZ1_CORK4 Tax_Id=645127 SubName: Full=DNA-directed RNA
           polymerase, alpha subunit; EC=2.7.7.6;[Corynebacterium
           kroppenstedtii]
          Length = 337

 Score =  519 bits (1336), Expect = e-145
 Identities = 263/344 (76%), Positives = 304/344 (88%), Gaps = 8/344 (2%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLISQRP L+EE +  SRS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTS+RI+GVL
Sbjct: 1   MLISQRPQLTEEYIDSSRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSVRIEGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGV EDV+DIILN+K LV+SS+ D+PVTMY+RK+GPGEVTAGDI+PPAGV +HN
Sbjct: 61  HEFTTVPGVTEDVSDIILNIKGLVLSSDSDDPVTMYIRKEGPGEVTAGDIMPPAGVEIHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P+M IATLN++GKL++ELVVERGRGYVPA Q  A+G EIGRIPVD IYSPVLKV+YKV+A
Sbjct: 121 PDMHIATLNEQGKLDIELVVERGRGYVPAAQ--ATG-EIGRIPVDQIYSPVLKVSYKVEA 177

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFD+L++DVETKNSIT RDA+ASAG TLVELFGLARELN  AEGIEIGPSP E
Sbjct: 178 TRVEQRTDFDRLVIDVETKNSITARDAMASAGGTLVELFGLARELNTAAEGIEIGPSPQE 237

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           ++HI ++ +PI+DL+ +VRSYNCLKRE +HTVGEL SRTESDLLDIRNFGQKSI+EVKVK
Sbjct: 238 SEHIQAYGMPIEDLNFSVRSYNCLKREEIHTVGELASRTESDLLDIRNFGQKSINEVKVK 297

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTW-STEGAYDDQDYAE 343
           L  LGL+LKD+P  +D SE+ GYD  TG W  TEG    +D AE
Sbjct: 298 LAGLGLALKDAPEGYDVSEIEGYDAETGEWIDTEG----EDIAE 337


>tr|C1WG44|C1WG44_9ACTO Tax_Id=479435 SubName: Full=DNA-directed RNA
           polymerase subunit alpha; EC=2.7.7.6;[Kribbella flavida
           DSM 17836]
          Length = 341

 Score =  519 bits (1336), Expect = e-145
 Identities = 259/346 (74%), Positives = 302/346 (87%), Gaps = 6/346 (1%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLI+QRPTL+EEV+ + RS+FVIEPLEPGFGYTLGNS+RRTLLSSIPGAAVTSI++DGVL
Sbjct: 1   MLIAQRPTLTEEVVGEHRSRFVIEPLEPGFGYTLGNSIRRTLLSSIPGAAVTSIKVDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEF+TV GVKED T +ILNLK LVVSSE DEPVTMYLRKQGPG+VTA DI PPAGV VHN
Sbjct: 61  HEFSTVAGVKEDATQLILNLKDLVVSSEHDEPVTMYLRKQGPGDVTAADIAPPAGVEVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P+++IATLN+KG+LE+ELVVERGRGYV A+QN+++ AEIGR+PVDSIYSPVLKVTYKV+A
Sbjct: 121 PDLKIATLNEKGRLEMELVVERGRGYVSAIQNKSADAEIGRMPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFD+L++DVETK S+ PRDA+ASAGKTLVELFGLARELNVEAEGI+IGPSP +
Sbjct: 181 TRVEQRTDFDRLVVDVETKPSMLPRDAVASAGKTLVELFGLARELNVEAEGIDIGPSPVD 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
               A  ALP++DL LTVRSYNCLKREG+HTVGEL+SR+E DLLDIRNFG KSIDEVK+K
Sbjct: 241 EQMAADLALPVEDLQLTVRSYNCLKREGIHTVGELISRSEQDLLDIRNFGSKSIDEVKLK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQDYAETEQ 346
           L ++GLSLKDSPP FD         A   +  +   +D+ +AETEQ
Sbjct: 301 LAEMGLSLKDSPPGFD------LRAAAEAYGDDAEDEDESFAETEQ 340


>sp|Q2JFE8|RPOA_FRASC Tax_Id=106370 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit alpha;[Frankia sp.]
          Length = 349

 Score =  518 bits (1335), Expect = e-145
 Identities = 262/349 (75%), Positives = 303/349 (86%), Gaps = 4/349 (1%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLI+QRPTL E+ +++ RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGA+VTSIRIDGVL
Sbjct: 1   MLIAQRPTLIEDPISEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGASVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEF+TVPGVKEDVTD+ILNLK LVVSS+ DEP  MYLRKQGPGEVTA DI PPAGV VHN
Sbjct: 61  HEFSTVPGVKEDVTDLILNLKELVVSSDNDEPTVMYLRKQGPGEVTAADIAPPAGVEVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P +R+ATLNDKGKLE+EL VERGRGYV A QN+ +G EIGRIP+DSIYSPVLKVTYKV+A
Sbjct: 121 PELRLATLNDKGKLEIELTVERGRGYVSAAQNKQAGQEIGRIPIDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFD+LI+DVETK SI+PRDA+ASAGKTLV LFGLA+ELN EAEG++IGPS A+
Sbjct: 181 TRVEQRTDFDRLIVDVETKPSISPRDAMASAGKTLVGLFGLAQELNAEAEGVDIGPSAAD 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           A   A  ALPI+++DLTVRSYNCLKREG+HT+GELVSR+E+DLLDIRNFGQKSIDEVK K
Sbjct: 241 AALAADLALPIEEMDLTVRSYNCLKREGIHTIGELVSRSEADLLDIRNFGQKSIDEVKTK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVA---GYDVATGTWSTEGAYDDQDYAETEQ 346
           L  +GL LKDSPP FDP +     G D  + ++S + + D  ++ ETEQ
Sbjct: 301 LGAMGLQLKDSPPGFDPRQAVDTYGTDAYSPSFS-DPSDDGAEFIETEQ 348


>tr|D1BBS7|D1BBS7_9MICO Tax_Id=446469 SubName: Full=DNA-directed RNA
           polymerase subunit alpha;[Sanguibacter keddieii DSM
           10542]
          Length = 334

 Score =  518 bits (1335), Expect = e-145
 Identities = 264/324 (81%), Positives = 292/324 (90%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLI+QRPTL+EEV+++SRS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLIAQRPTLTEEVISESRSRFSIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVT+IILN+K LVVSSE DEPV MYLRKQG G VTA DIVPPAGV VHN
Sbjct: 61  HEFTTVPGVKEDVTEIILNVKNLVVSSENDEPVVMYLRKQGSGVVTAADIVPPAGVEVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ IATLNDKGKLE+EL VERGRGYV A QN++  AEIGR+PVDSIYSPVLKVTYKV+A
Sbjct: 121 PDLHIATLNDKGKLEIELTVERGRGYVSAQQNKSFDAEIGRVPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLI+DVETK +I+PRDALASAGKTLVELFGLARELNVEAEGIEIGPSP +
Sbjct: 181 TRVEQRTDFDKLIVDVETKQAISPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPTD 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           A   A  ALPI+DL LT+RSYNCLKREG+H VGELV+R+E+DLLDIRNFG KSI+EVK K
Sbjct: 241 AALAADLALPIEDLQLTIRSYNCLKREGIHAVGELVARSEADLLDIRNFGAKSINEVKDK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYD 324
           L +LGLSLKDSP  FDP+    YD
Sbjct: 301 LAELGLSLKDSPLDFDPTTADYYD 324


>tr|A8LB05|A8LB05_FRASN Tax_Id=298653 SubName: Full=DNA-directed RNA
           polymerase, alpha subunit;[Frankia sp.]
          Length = 375

 Score =  518 bits (1334), Expect = e-145
 Identities = 260/349 (74%), Positives = 303/349 (86%), Gaps = 4/349 (1%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLI+QRP+L+E+ +++ RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIR+DGVL
Sbjct: 27  MLIAQRPSLAEDPISEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRVDGVL 86

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEF+TVPGVKEDVTD+ILNLK LVVSS+ DEP  MYLRKQGPGEVTA DI PPAGV VHN
Sbjct: 87  HEFSTVPGVKEDVTDLILNLKELVVSSDNDEPTVMYLRKQGPGEVTAADIAPPAGVEVHN 146

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ +ATLNDKGKLE+EL VERGRGYV A QN+  G EIGRIP+DSIYSPVLKVTYKV+A
Sbjct: 147 PDLHLATLNDKGKLEIELTVERGRGYVSAAQNKQPGQEIGRIPIDSIYSPVLKVTYKVEA 206

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFD+LI+DVETK SI+PRDA+ASAGKTLV LFGLA+ELN EAEG++IGPS A+
Sbjct: 207 TRVEQRTDFDRLIVDVETKQSISPRDAMASAGKTLVGLFGLAQELNAEAEGVDIGPSAAD 266

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           A   A  ALPI+++DLTVRSYNCLKREG+HT+GELVSR+E+DLLDIRNFGQKSIDEVK K
Sbjct: 267 AALAADLALPIEEMDLTVRSYNCLKREGIHTIGELVSRSEADLLDIRNFGQKSIDEVKTK 326

Query: 301 LHQLGLSLKDSPPSFDPSEVA---GYDVATGTWSTEGAYDDQDYAETEQ 346
           L  +GL LKDSPP FDP +     G D    ++S + + D +++ ETEQ
Sbjct: 327 LGAMGLQLKDSPPGFDPRQAVDTYGTDTYNPSFS-DPSDDGREFVETEQ 374


>tr|C7R162|C7R162_JONDD Tax_Id=471856 SubName: Full=DNA-directed RNA
           polymerase, alpha subunit;[Jonesia denitrificans]
          Length = 334

 Score =  518 bits (1333), Expect = e-145
 Identities = 262/323 (81%), Positives = 292/323 (90%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLI+QRPTLSEEV++D+RS+F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLIAQRPTLSEEVISDARSRFTIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEF+T+ GVKEDVT+IILN+K LV+SSE DEPV MYLRKQG G VTA DIVPPAGV VHN
Sbjct: 61  HEFSTITGVKEDVTEIILNVKNLVLSSENDEPVVMYLRKQGAGVVTAADIVPPAGVEVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ IATLNDKGKLE+EL VERGRGYV A QN++  AEIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PDLHIATLNDKGKLEIELTVERGRGYVSAQQNKSMDAEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFD+LI+DVETK+SI PRDALASAGKTLVELFGLARELNVEAEGIEIGPSP +
Sbjct: 181 TRVEQRTDFDRLIVDVETKSSIVPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPTD 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           A   A  ALPI+DL+LT+RSYNCLKREG+H VGELV+R+E+DLLDIRNFG KSI+EVK K
Sbjct: 241 AALAADLALPIEDLNLTIRSYNCLKREGIHQVGELVARSEADLLDIRNFGAKSINEVKEK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGY 323
           LH+LGLSLKDSP  F PS  + Y
Sbjct: 301 LHELGLSLKDSPLDFQPSSESDY 323


>tr|D1BWW1|D1BWW1_9MICO Tax_Id=446471 SubName: Full=DNA-directed RNA
           polymerase, alpha subunit;[Xylanimonas cellulosilytica
           DSM 15894]
          Length = 334

 Score =  517 bits (1332), Expect = e-145
 Identities = 267/339 (78%), Positives = 300/339 (88%), Gaps = 6/339 (1%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLI+QRPTL+EEV++++R++F IEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLIAQRPTLTEEVISENRTRFAIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVT+IILN+K LVVSSE DEPV MYLRKQG G VTA DIVPPAGV VHN
Sbjct: 61  HEFTTVPGVKEDVTEIILNIKNLVVSSENDEPVVMYLRKQGAGAVTAADIVPPAGVEVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ IATLNDKGKLE+EL VERGRGYV A QN++  AEIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PDLHIATLNDKGKLEIELTVERGRGYVSAAQNKSLDAEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLI+DVETK +ITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSP +
Sbjct: 181 TRVEQRTDFDKLIVDVETKPAITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPTD 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           +   A  ALPI++L+LT+RSYNCLKREG+H VGELV+R+E+DLLDIRNFG KSI+EVK K
Sbjct: 241 SALAADLALPIEELNLTIRSYNCLKREGIHQVGELVARSEADLLDIRNFGAKSINEVKEK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQ 339
           L +LGL+LKDSP  FDPS  + YD    T     AYD+Q
Sbjct: 301 LAELGLALKDSPLDFDPS-ASFYDGGDDT-----AYDEQ 333


>sp|Q0RRP3|RPOA_FRAAA Tax_Id=326424 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit alpha;[Frankia
           alni]
          Length = 349

 Score =  516 bits (1328), Expect = e-144
 Identities = 262/351 (74%), Positives = 300/351 (85%), Gaps = 8/351 (2%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLI+QRPTL E+ +++ RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGA+VTSIRIDGVL
Sbjct: 1   MLIAQRPTLVEDPISEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGASVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEF+TVPGVKEDVTD+ILNLK LVVSS+ DEP  MYLRKQGPGEVTA DI PPAGV VH+
Sbjct: 61  HEFSTVPGVKEDVTDLILNLKELVVSSDNDEPTVMYLRKQGPGEVTAADIAPPAGVEVHS 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P +R+ATLNDKGKLE+EL VERGRGYV A QN+ +G EIGRIP+DSIYSPVLKVTYKV+A
Sbjct: 121 PELRLATLNDKGKLEIELTVERGRGYVSAAQNKQAGQEIGRIPIDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFD+LI+DVETK SI+PRDA+ASAGKTLV LFGLA+ELN EAEG++IGPS A+
Sbjct: 181 TRVEQRTDFDRLIVDVETKPSISPRDAMASAGKTLVGLFGLAQELNAEAEGVDIGPSAAD 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           A   A  ALPI+++DLTVRSYNCLKREG+HT+GELVSR+E+DLLDIRNFGQKSIDEVK K
Sbjct: 241 AALAADLALPIEEMDLTVRSYNCLKREGIHTIGELVSRSEADLLDIRNFGQKSIDEVKTK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDD-----QDYAETEQ 346
           L  +GL LKDSPP FDP +        GT S   A+ D      ++ ETEQ
Sbjct: 301 LGAMGLQLKDSPPGFDPRQAVD---TYGTDSYNPAFSDPSDDGAEFVETEQ 348


>sp|B1W3Y0|RPOA_STRGG Tax_Id=455632 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit alpha;[Streptomyces
           griseus subsp. griseus]
          Length = 340

 Score =  515 bits (1327), Expect = e-144
 Identities = 265/348 (76%), Positives = 300/348 (86%), Gaps = 11/348 (3%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLI+QRP+L+EEV+ + RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLIAQRPSLTEEVVDEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTD+ILN+K LVVSSE DEPV MYLRKQGPG VTA DI PPAGV VHN
Sbjct: 61  HEFTTVPGVKEDVTDLILNIKQLVVSSEHDEPVVMYLRKQGPGLVTAADIAPPAGVEVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ +ATLN KGKLE+EL VERGRGYV AVQN+  G EIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PDLVLATLNGKGKLEMELTVERGRGYVSAVQNKQVGQEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLI+DVETK ++ PRDA+ASAGKTLVELFGLARELN++AEGI++GPSP +
Sbjct: 181 TRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMGPSPTD 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           A   A  ALPI++L+LTVRSYNCLKREG+H+VGELV+R+E+DLLDIRNFG KSIDEVK K
Sbjct: 241 AALAADLALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSIDEVKAK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQD--YAETEQ 346
           L  +GL+LKDSPP FDP+  A            GA DD D  + ETEQ
Sbjct: 301 LAGMGLALKDSPPGFDPTAAA---------DAFGADDDADAGFVETEQ 339


>sp|P60312|RPOA_STRCO Tax_Id=1902 (rpoA)RecName: Full=DNA-directed
           RNA polymerase subunit alpha; Short=RNAP subunit alpha;
           EC=2.7.7.6; AltName: Full=Transcriptase subunit alpha;
           AltName: Full=RNA polymerase subunit alpha;[Streptomyces
           coelicolor]
          Length = 340

 Score =  515 bits (1327), Expect = e-144
 Identities = 265/348 (76%), Positives = 300/348 (86%), Gaps = 11/348 (3%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLI+QRP+L+EEV+ + RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL
Sbjct: 1   MLIAQRPSLTEEVVDEFRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTD+ILN+K LVVSSE DEPV MYLRKQGPG VTA DI PPAGV VHN
Sbjct: 61  HEFTTVPGVKEDVTDLILNIKQLVVSSEHDEPVVMYLRKQGPGLVTAADIAPPAGVEVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ +ATLN KGKLE+EL VERGRGYV AVQN+  G EIGRIPVDSIYSPVLKVTYKV+A
Sbjct: 121 PDLVLATLNGKGKLEMELTVERGRGYVSAVQNKQVGQEIGRIPVDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLI+DVETK ++ PRDA+ASAGKTLVELFGLARELN++AEGI++GPSP +
Sbjct: 181 TRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMGPSPTD 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           A   A  ALPI++L+LTVRSYNCLKREG+H+VGELV+R+E+DLLDIRNFG KSIDEVK K
Sbjct: 241 AALAADLALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSIDEVKAK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQD--YAETEQ 346
           L  +GL+LKDSPP FDP+  A            GA DD D  + ETEQ
Sbjct: 301 LAGMGLALKDSPPGFDPTAAA---------DAFGADDDADAGFVETEQ 339


>tr|B4V4X3|B4V4X3_9ACTO Tax_Id=465541 SubName: Full=DNA-directed RNA
           polymerase alpha subunit;[Streptomyces sp. Mg1]
          Length = 340

 Score =  515 bits (1327), Expect = e-144
 Identities = 264/348 (75%), Positives = 300/348 (86%), Gaps = 11/348 (3%)

Query: 1   MLISQRPTLSEEVLTDSRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVL 60
           MLI+QRP+L+EEV+ + RS+FVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIR+DGVL
Sbjct: 1   MLIAQRPSLTEEVVDEYRSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRVDGVL 60

Query: 61  HEFTTVPGVKEDVTDIILNLKALVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVTVHN 120
           HEFTTVPGVKEDVTDIILN+K LVVSSE DEPV MYLRKQGPG VTA DI PPAGV VHN
Sbjct: 61  HEFTTVPGVKEDVTDIILNIKQLVVSSEHDEPVVMYLRKQGPGLVTAADIAPPAGVEVHN 120

Query: 121 PNMRIATLNDKGKLEVELVVERGRGYVPAVQNRASGAEIGRIPVDSIYSPVLKVTYKVDA 180
           P++ +ATLN KGKLE+EL VERGRGYV AVQN+  G EIGRIP+DSIYSPVLKVTYKV+A
Sbjct: 121 PDLVLATLNGKGKLEMELTVERGRGYVSAVQNKQLGQEIGRIPIDSIYSPVLKVTYKVEA 180

Query: 181 TRVEQRTDFDKLILDVETKNSITPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE 240
           TRVEQRTDFDKLI+DVETK ++ PRDA+ASAGKTLVELFGLARELN++AEGI++GPSP +
Sbjct: 181 TRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLARELNIDAEGIDMGPSPTD 240

Query: 241 ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK 300
           A   A  ALPI++L+LTVRSYNCLKREG+H+VGELV+R+E+DLLDIRNFG KSIDEVK K
Sbjct: 241 AALAADLALPIEELELTVRSYNCLKREGIHSVGELVARSEADLLDIRNFGAKSIDEVKAK 300

Query: 301 LHQLGLSLKDSPPSFDPSEVAGYDVATGTWSTEGAYDDQD--YAETEQ 346
           L  +GL+LKDSPP FDP+  A            GA DD D  + ETEQ
Sbjct: 301 LAGMGLALKDSPPGFDPTAAA---------DAFGADDDADAGFVETEQ 339


  Database: Amellifera_nr
    Posted date:  Feb 5, 2010  5:10 AM
  Number of letters in database: 3,846,993,858
  Number of sequences in database:  11,275,203
  
Lambda     K      H
   0.313    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11275203
Number of Hits to DB: 2,535,863,429
Number of extensions: 105291079
Number of successful extensions: 223189
Number of sequences better than 10.0: 3276
Number of HSP's gapped: 219788
Number of HSP's successfully gapped: 3413
Length of query: 347
Length of database: 3,846,993,858
Length adjustment: 138
Effective length of query: 209
Effective length of database: 2,291,015,844
Effective search space: 478822311396
Effective search space used: 478822311396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 81 (35.8 bits)