BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MMAR_1092
         (237 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,275,203 sequences; 3,846,993,858 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|B2HCX6|B2HCX6_MYCMM Tax_Id=216594 (truA)RecName: Full=Pseudou...   473   e-132
tr|A0PMB9|A0PMB9_MYCUA Tax_Id=362242 (truA)RecName: Full=Pseudou...   473   e-131
sp|P65846|TRUA_MYCTU Tax_Id=1773 (truA)RecName: Full=tRNA pseudo...   406   e-111
sp|P65847|TRUA_MYCBO Tax_Id=1765 (truA)RecName: Full=tRNA pseudo...   406   e-111
tr|C6DLX6|C6DLX6_MYCTK Tax_Id=478434 RecName: Full=Pseudouridyla...   406   e-111
tr|C1AHR3|C1AHR3_MYCBT Tax_Id=561275 (truA)RecName: Full=Pseudou...   406   e-111
tr|A5U8D1|A5U8D1_MYCTA Tax_Id=419947 (truA)RecName: Full=Pseudou...   406   e-111
tr|A1KPE1|A1KPE1_MYCBP Tax_Id=410289 (truA)RecName: Full=Pseudou...   406   e-111
tr|A5WT28|A5WT28_MYCTF Tax_Id=336982 RecName: Full=Pseudouridyla...   406   e-111
tr|A4KLX9|A4KLX9_MYCTU Tax_Id=395095 RecName: Full=Pseudouridyla...   406   e-111
tr|A2VPN3|A2VPN3_MYCTU Tax_Id=348776 RecName: Full=Pseudouridyla...   406   e-111
sp|Q73S41|TRUA_MYCPA Tax_Id=1770 (truA)RecName: Full=tRNA pseudo...   377   e-103
tr|A0QKU3|A0QKU3_MYCA1 Tax_Id=243243 (truA)RecName: Full=Pseudou...   374   e-102
tr|Q1BD06|Q1BD06_MYCSS Tax_Id=164756 RecName: Full=Pseudouridyla...   369   e-100
tr|A3PVM0|A3PVM0_MYCSJ Tax_Id=164757 RecName: Full=Pseudouridyla...   369   e-100
tr|A1UBY7|A1UBY7_MYCSK Tax_Id=189918 RecName: Full=Pseudouridyla...   369   e-100
sp|Q9X796|TRUA_MYCLE Tax_Id=1769 (truA)RecName: Full=tRNA pseudo...   363   8e-99
tr|B8ZSH4|B8ZSH4_MYCLB Tax_Id=561304 (truA)RecName: Full=Pseudou...   363   8e-99
tr|A4TEJ1|A4TEJ1_MYCGI Tax_Id=350054 RecName: Full=Pseudouridyla...   340   6e-92
tr|A1T522|A1T522_MYCVP Tax_Id=350058 RecName: Full=Pseudouridyla...   337   5e-91
tr|A0QSM0|A0QSM0_MYCS2 Tax_Id=246196 (truA)RecName: Full=Pseudou...   337   7e-91
tr|B1MG97|B1MG97_MYCA9 Tax_Id=561007 RecName: Full=Pseudouridyla...   319   2e-85
tr|C1B043|C1B043_RHOOB Tax_Id=632772 (truA)RecName: Full=Pseudou...   280   7e-74
tr|Q0S3E5|Q0S3E5_RHOSR Tax_Id=101510 RecName: Full=Pseudouridyla...   280   9e-74
tr|C0ZW56|C0ZW56_RHOE4 Tax_Id=234621 (truA)RecName: Full=Pseudou...   272   3e-71
tr|C3JGZ4|C3JGZ4_RHOER Tax_Id=596309 (truA)RecName: Full=Pseudou...   272   3e-71
tr|D0L2F0|D0L2F0_GORB4 Tax_Id=526226 SubName: Full=tRNA pseudour...   268   4e-70
sp|Q5Z1K7|TRUA_NOCFA Tax_Id=37329 (truA)RecName: Full=tRNA pseud...   266   1e-69
tr|C2AM23|C2AM23_TSUPA Tax_Id=521096 RecName: Full=Pseudouridyla...   253   2e-65
tr|C6WLZ4|C6WLZ4_ACTMD Tax_Id=446462 RecName: Full=Pseudouridyla...   249   2e-64
tr|C0U7Z3|C0U7Z3_9ACTO Tax_Id=526225 RecName: Full=Pseudouridyla...   249   2e-64
tr|C7MTX7|C7MTX7_SACVD Tax_Id=471857 RecName: Full=Pseudouridyla...   236   2e-60
tr|C8XCL6|C8XCL6_NAKMY Tax_Id=479431 SubName: Full=tRNA pseudour...   235   3e-60
tr|A4FPJ0|A4FPJ0_SACEN Tax_Id=405948 (truA)RecName: Full=Pseudou...   234   8e-60
tr|C6R9B4|C6R9B4_9CORY Tax_Id=553206 (truA)RecName: Full=Pseudou...   234   8e-60
tr|C2CQ41|C2CQ41_CORST Tax_Id=525268 (truA)RecName: Full=Pseudou...   234   8e-60
tr|C2BK37|C2BK37_9CORY Tax_Id=525264 (truA)RecName: Full=Pseudou...   234   8e-60
sp|Q8FS31|TRUA_COREF Tax_Id=152794 (truA)RecName: Full=tRNA pseu...   232   2e-59
tr|C8NMD3|C8NMD3_COREF Tax_Id=196164 (truA)SubName: Full=tRNA ps...   232   2e-59
sp|P60349|TRUA_CORDI Tax_Id=1717 (truA)RecName: Full=tRNA pseudo...   230   9e-59
tr|Q4JTC5|Q4JTC5_CORJK Tax_Id=306537 (truA)RecName: Full=Pseudou...   226   2e-57
tr|Q47LM3|Q47LM3_THEFY Tax_Id=269800 RecName: Full=Pseudouridyla...   225   3e-57
tr|C8RUH0|C8RUH0_CORJE Tax_Id=525262 (truA)SubName: Full=tRNA ps...   223   1e-56
tr|C0WIL8|C0WIL8_9CORY Tax_Id=525260 (truA)RecName: Full=Pseudou...   223   1e-56
tr|Q0RRP1|Q0RRP1_FRAAA Tax_Id=326424 (truA)RecName: Full=Pseudou...   221   4e-56
tr|C5VEY4|C5VEY4_9CORY Tax_Id=553207 (truA)RecName: Full=Pseudou...   221   4e-56
tr|C0E0J5|C0E0J5_9CORY Tax_Id=566549 RecName: Full=Pseudouridyla...   221   4e-56
sp|Q2JFE6|TRUA_FRASC Tax_Id=106370 (truA)RecName: Full=tRNA pseu...   220   9e-56
tr|A8LB03|A8LB03_FRASN Tax_Id=298653 RecName: Full=Pseudouridyla...   218   4e-55
tr|B1VEY4|B1VEY4_CORU7 Tax_Id=504474 RecName: Full=Pseudouridyla...   218   6e-55

>tr|B2HCX6|B2HCX6_MYCMM Tax_Id=216594 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Mycobacterium marinum]
          Length = 237

 Score =  473 bits (1217), Expect = e-132
 Identities = 236/237 (99%), Positives = 237/237 (100%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           +RLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR
Sbjct: 1   MRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL
Sbjct: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE
Sbjct: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRSRTD 237
           HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRSRTD
Sbjct: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRSRTD 237


>tr|A0PMB9|A0PMB9_MYCUA Tax_Id=362242 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Mycobacterium ulcerans]
          Length = 260

 Score =  473 bits (1216), Expect = e-131
 Identities = 236/237 (99%), Positives = 237/237 (100%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR
Sbjct: 24  VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 83

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVAS+EL
Sbjct: 84  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASQEL 143

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE
Sbjct: 144 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 203

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRSRTD 237
           HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRSRTD
Sbjct: 204 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRSRTD 260


>sp|P65846|TRUA_MYCTU Tax_Id=1773 (truA)RecName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12; AltName:
           Full=tRNA-uridine isomerase I; AltName: Full=tRNA
           pseudouridylate synthase I;[Mycobacterium tuberculosis]
          Length = 297

 Score =  406 bits (1043), Expect = e-111
 Identities = 196/234 (83%), Positives = 210/234 (89%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRLRAAGRTDAGVHA+GQVAH DVP DALPNAY R+   GDPEFLPL+RRL RFLPAD+R
Sbjct: 63  VRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVR 122

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           +LDI RAP  FDARFSALRRHYVYRLSTAPYGVEPQQARY+T WPRELD+DAMT ASR+L
Sbjct: 123 ILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDL 182

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           +GLH+FAAFCR REGATTIRDLQRLDWSR G LVTA V+ADAFCWSMVRSLVGALLAVGE
Sbjct: 183 MGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGE 242

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           HRR   WCRELLTAT RSSDFA APAHGL L +VDYPPDDQLASR L+TRD+RS
Sbjct: 243 HRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRS 296


>sp|P65847|TRUA_MYCBO Tax_Id=1765 (truA)RecName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12; AltName:
           Full=tRNA-uridine isomerase I; AltName: Full=tRNA
           pseudouridylate synthase I;[Mycobacterium bovis]
          Length = 297

 Score =  406 bits (1043), Expect = e-111
 Identities = 196/234 (83%), Positives = 210/234 (89%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRLRAAGRTDAGVHA+GQVAH DVP DALPNAY R+   GDPEFLPL+RRL RFLPAD+R
Sbjct: 63  VRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVR 122

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           +LDI RAP  FDARFSALRRHYVYRLSTAPYGVEPQQARY+T WPRELD+DAMT ASR+L
Sbjct: 123 ILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDL 182

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           +GLH+FAAFCR REGATTIRDLQRLDWSR G LVTA V+ADAFCWSMVRSLVGALLAVGE
Sbjct: 183 MGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGE 242

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           HRR   WCRELLTAT RSSDFA APAHGL L +VDYPPDDQLASR L+TRD+RS
Sbjct: 243 HRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRS 296


>tr|C6DLX6|C6DLX6_MYCTK Tax_Id=478434 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium tuberculosis]
          Length = 297

 Score =  406 bits (1043), Expect = e-111
 Identities = 196/234 (83%), Positives = 210/234 (89%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRLRAAGRTDAGVHA+GQVAH DVP DALPNAY R+   GDPEFLPL+RRL RFLPAD+R
Sbjct: 63  VRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVR 122

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           +LDI RAP  FDARFSALRRHYVYRLSTAPYGVEPQQARY+T WPRELD+DAMT ASR+L
Sbjct: 123 ILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDL 182

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           +GLH+FAAFCR REGATTIRDLQRLDWSR G LVTA V+ADAFCWSMVRSLVGALLAVGE
Sbjct: 183 MGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGE 242

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           HRR   WCRELLTAT RSSDFA APAHGL L +VDYPPDDQLASR L+TRD+RS
Sbjct: 243 HRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRS 296


>tr|C1AHR3|C1AHR3_MYCBT Tax_Id=561275 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Mycobacterium bovis]
          Length = 256

 Score =  406 bits (1043), Expect = e-111
 Identities = 196/234 (83%), Positives = 210/234 (89%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRLRAAGRTDAGVHA+GQVAH DVP DALPNAY R+   GDPEFLPL+RRL RFLPAD+R
Sbjct: 22  VRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVR 81

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           +LDI RAP  FDARFSALRRHYVYRLSTAPYGVEPQQARY+T WPRELD+DAMT ASR+L
Sbjct: 82  ILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDL 141

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           +GLH+FAAFCR REGATTIRDLQRLDWSR G LVTA V+ADAFCWSMVRSLVGALLAVGE
Sbjct: 142 MGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGE 201

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           HRR   WCRELLTAT RSSDFA APAHGL L +VDYPPDDQLASR L+TRD+RS
Sbjct: 202 HRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRS 255


>tr|A5U8D1|A5U8D1_MYCTA Tax_Id=419947 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Mycobacterium tuberculosis]
          Length = 256

 Score =  406 bits (1043), Expect = e-111
 Identities = 196/234 (83%), Positives = 210/234 (89%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRLRAAGRTDAGVHA+GQVAH DVP DALPNAY R+   GDPEFLPL+RRL RFLPAD+R
Sbjct: 22  VRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVR 81

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           +LDI RAP  FDARFSALRRHYVYRLSTAPYGVEPQQARY+T WPRELD+DAMT ASR+L
Sbjct: 82  ILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDL 141

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           +GLH+FAAFCR REGATTIRDLQRLDWSR G LVTA V+ADAFCWSMVRSLVGALLAVGE
Sbjct: 142 MGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGE 201

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           HRR   WCRELLTAT RSSDFA APAHGL L +VDYPPDDQLASR L+TRD+RS
Sbjct: 202 HRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRS 255


>tr|A1KPE1|A1KPE1_MYCBP Tax_Id=410289 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Mycobacterium bovis]
          Length = 256

 Score =  406 bits (1043), Expect = e-111
 Identities = 196/234 (83%), Positives = 210/234 (89%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRLRAAGRTDAGVHA+GQVAH DVP DALPNAY R+   GDPEFLPL+RRL RFLPAD+R
Sbjct: 22  VRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVR 81

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           +LDI RAP  FDARFSALRRHYVYRLSTAPYGVEPQQARY+T WPRELD+DAMT ASR+L
Sbjct: 82  ILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDL 141

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           +GLH+FAAFCR REGATTIRDLQRLDWSR G LVTA V+ADAFCWSMVRSLVGALLAVGE
Sbjct: 142 MGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGE 201

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           HRR   WCRELLTAT RSSDFA APAHGL L +VDYPPDDQLASR L+TRD+RS
Sbjct: 202 HRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRS 255


>tr|A5WT28|A5WT28_MYCTF Tax_Id=336982 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium tuberculosis]
          Length = 297

 Score =  406 bits (1043), Expect = e-111
 Identities = 196/234 (83%), Positives = 210/234 (89%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRLRAAGRTDAGVHA+GQVAH DVP DALPNAY R+   GDPEFLPL+RRL RFLPAD+R
Sbjct: 63  VRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVR 122

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           +LDI RAP  FDARFSALRRHYVYRLSTAPYGVEPQQARY+T WPRELD+DAMT ASR+L
Sbjct: 123 ILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDL 182

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           +GLH+FAAFCR REGATTIRDLQRLDWSR G LVTA V+ADAFCWSMVRSLVGALLAVGE
Sbjct: 183 MGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGE 242

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           HRR   WCRELLTAT RSSDFA APAHGL L +VDYPPDDQLASR L+TRD+RS
Sbjct: 243 HRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRS 296


>tr|A4KLX9|A4KLX9_MYCTU Tax_Id=395095 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium tuberculosis str.
           Haarlem]
          Length = 297

 Score =  406 bits (1043), Expect = e-111
 Identities = 196/234 (83%), Positives = 210/234 (89%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRLRAAGRTDAGVHA+GQVAH DVP DALPNAY R+   GDPEFLPL+RRL RFLPAD+R
Sbjct: 63  VRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVR 122

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           +LDI RAP  FDARFSALRRHYVYRLSTAPYGVEPQQARY+T WPRELD+DAMT ASR+L
Sbjct: 123 ILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDL 182

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           +GLH+FAAFCR REGATTIRDLQRLDWSR G LVTA V+ADAFCWSMVRSLVGALLAVGE
Sbjct: 183 MGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGE 242

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           HRR   WCRELLTAT RSSDFA APAHGL L +VDYPPDDQLASR L+TRD+RS
Sbjct: 243 HRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRS 296


>tr|A2VPN3|A2VPN3_MYCTU Tax_Id=348776 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium tuberculosis C]
          Length = 297

 Score =  406 bits (1043), Expect = e-111
 Identities = 196/234 (83%), Positives = 210/234 (89%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRLRAAGRTDAGVHA+GQVAH DVP DALPNAY R+   GDPEFLPL+RRL RFLPAD+R
Sbjct: 63  VRLRAAGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGDPEFLPLLRRLGRFLPADVR 122

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           +LDI RAP  FDARFSALRRHYVYRLSTAPYGVEPQQARY+T WPRELD+DAMT ASR+L
Sbjct: 123 ILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDL 182

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           +GLH+FAAFCR REGATTIRDLQRLDWSR G LVTA V+ADAFCWSMVRSLVGALLAVGE
Sbjct: 183 MGLHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGE 242

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           HRR   WCRELLTAT RSSDFA APAHGL L +VDYPPDDQLASR L+TRD+RS
Sbjct: 243 HRRATTWCRELLTATGRSSDFAVAPAHGLTLIQVDYPPDDQLASRNLVTRDVRS 296


>sp|Q73S41|TRUA_MYCPA Tax_Id=1770 (truA)RecName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12; AltName:
           Full=tRNA-uridine isomerase I; AltName: Full=tRNA
           pseudouridylate synthase I;[Mycobacterium
           paratuberculosis]
          Length = 251

 Score =  377 bits (967), Expect = e-103
 Identities = 185/235 (78%), Positives = 204/235 (86%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRLRAAGRTDAGVHATGQVAH DVP  ALPNAY R+   G+ EF PL+RRL RFLP D+R
Sbjct: 17  VRLRAAGRTDAGVHATGQVAHLDVPGTALPNAYPRAPHVGEAEFGPLLRRLGRFLPTDVR 76

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V+DI RAP  FDARFSALRRHYVYRLSTAP+GV PQQARYVT WPR LD++AM  ASR+L
Sbjct: 77  VVDITRAPAGFDARFSALRRHYVYRLSTAPWGVLPQQARYVTAWPRPLDVEAMAAASRDL 136

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           LGLH+FAAFCR RE ATTIRDLQRLDW+R+G L+TA+VSADAFCWSMVRSLVGALLAVGE
Sbjct: 137 LGLHDFAAFCRHRENATTIRDLQRLDWTRDGDLITARVSADAFCWSMVRSLVGALLAVGE 196

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRSR 235
           +RR   WCRELL+AT RSSD+A APAHGL L  VDYPPDDQLA+R LITRD+RSR
Sbjct: 197 NRRPVSWCRELLSATNRSSDYATAPAHGLTLVGVDYPPDDQLAARNLITRDVRSR 251


>tr|A0QKU3|A0QKU3_MYCA1 Tax_Id=243243 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Mycobacterium avium]
          Length = 251

 Score =  374 bits (961), Expect = e-102
 Identities = 184/235 (78%), Positives = 203/235 (86%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRLRAAGRTDAGVHATGQVAH DVP  ALPNAY R+   G+ EF PL+RRL RFLP D+R
Sbjct: 17  VRLRAAGRTDAGVHATGQVAHLDVPGTALPNAYPRAPHVGEAEFGPLLRRLGRFLPTDVR 76

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V+DI RAP  FDARFSALRRHYVYRLSTAP+GV PQQARYVT WPR LD++AM  ASR+L
Sbjct: 77  VVDITRAPAGFDARFSALRRHYVYRLSTAPWGVLPQQARYVTAWPRPLDVEAMAAASRDL 136

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           LGLH+FAAFCR RE ATTIRDLQRLDW+R+G L+ A+VSADAFCWSMVRSLVGALLAVGE
Sbjct: 137 LGLHDFAAFCRHRENATTIRDLQRLDWTRDGDLIIARVSADAFCWSMVRSLVGALLAVGE 196

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRSR 235
           +RR   WCRELL+AT RSSD+A APAHGL L  VDYPPDDQLA+R LITRD+RSR
Sbjct: 197 NRRPVSWCRELLSATNRSSDYATAPAHGLTLVGVDYPPDDQLAARNLITRDVRSR 251


>tr|Q1BD06|Q1BD06_MYCSS Tax_Id=164756 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium sp.]
          Length = 299

 Score =  369 bits (947), Expect = e-100
 Identities = 179/233 (76%), Positives = 200/233 (85%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           V +RAAGRTDAGVHATGQVAH DVP DALP+AY RSAR  +PEFLPLVRRL RFLPAD+R
Sbjct: 64  VTVRAAGRTDAGVHATGQVAHVDVPDDALPHAYPRSARPDEPEFLPLVRRLGRFLPADVR 123

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           + DI RAPT FDARFSALRRHY YRL TAPYGVEPQ AR+VT WPR LD++AM  A  +L
Sbjct: 124 IRDIIRAPTGFDARFSALRRHYTYRLGTAPYGVEPQSARFVTPWPRPLDVEAMNDAGSQL 183

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           +GL +FAAFCR REGATTIRDLQRL+W+R+G LVTA VSADAFCWSMVRSLVGAL+AVGE
Sbjct: 184 VGLRDFAAFCRHREGATTIRDLQRLEWTRDGDLVTAYVSADAFCWSMVRSLVGALIAVGE 243

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLR 233
           HRR P+WC  LL+AT RSS+FAAAP  GL L  VDYPPDD+LA+R L+TRDLR
Sbjct: 244 HRREPEWCAGLLSATRRSSEFAAAPPQGLTLVGVDYPPDDELAARTLVTRDLR 296


>tr|A3PVM0|A3PVM0_MYCSJ Tax_Id=164757 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium sp.]
          Length = 299

 Score =  369 bits (947), Expect = e-100
 Identities = 179/233 (76%), Positives = 200/233 (85%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           V +RAAGRTDAGVHATGQVAH DVP DALP+AY RSAR  +PEFLPLVRRL RFLPAD+R
Sbjct: 64  VTVRAAGRTDAGVHATGQVAHVDVPDDALPHAYPRSARPDEPEFLPLVRRLGRFLPADVR 123

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           + DI RAPT FDARFSALRRHY YRL TAPYGVEPQ AR+VT WPR LD++AM  A  +L
Sbjct: 124 IRDIIRAPTGFDARFSALRRHYTYRLGTAPYGVEPQSARFVTPWPRPLDVEAMNDAGSQL 183

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           +GL +FAAFCR REGATTIRDLQRL+W+R+G LVTA VSADAFCWSMVRSLVGAL+AVGE
Sbjct: 184 VGLRDFAAFCRHREGATTIRDLQRLEWTRDGDLVTAYVSADAFCWSMVRSLVGALIAVGE 243

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLR 233
           HRR P+WC  LL+AT RSS+FAAAP  GL L  VDYPPDD+LA+R L+TRDLR
Sbjct: 244 HRREPEWCAGLLSATRRSSEFAAAPPQGLTLVGVDYPPDDELAARTLVTRDLR 296


>tr|A1UBY7|A1UBY7_MYCSK Tax_Id=189918 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium sp.]
          Length = 299

 Score =  369 bits (947), Expect = e-100
 Identities = 179/233 (76%), Positives = 200/233 (85%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           V +RAAGRTDAGVHATGQVAH DVP DALP+AY RSAR  +PEFLPLVRRL RFLPAD+R
Sbjct: 64  VTVRAAGRTDAGVHATGQVAHVDVPDDALPHAYPRSARPDEPEFLPLVRRLGRFLPADVR 123

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           + DI RAPT FDARFSALRRHY YRL TAPYGVEPQ AR+VT WPR LD++AM  A  +L
Sbjct: 124 IRDIIRAPTGFDARFSALRRHYTYRLGTAPYGVEPQSARFVTPWPRPLDVEAMNDAGSQL 183

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           +GL +FAAFCR REGATTIRDLQRL+W+R+G LVTA VSADAFCWSMVRSLVGAL+AVGE
Sbjct: 184 VGLRDFAAFCRHREGATTIRDLQRLEWTRDGDLVTAYVSADAFCWSMVRSLVGALIAVGE 243

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLR 233
           HRR P+WC  LL+AT RSS+FAAAP  GL L  VDYPPDD+LA+R L+TRDLR
Sbjct: 244 HRREPEWCAGLLSATRRSSEFAAAPPQGLTLVGVDYPPDDELAARTLVTRDLR 296


>sp|Q9X796|TRUA_MYCLE Tax_Id=1769 (truA)RecName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12; AltName:
           Full=tRNA-uridine isomerase I; AltName: Full=tRNA
           pseudouridylate synthase I;[Mycobacterium leprae]
          Length = 286

 Score =  363 bits (932), Expect = 8e-99
 Identities = 174/234 (74%), Positives = 196/234 (83%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRLRAAGRTD GVHATGQVAH D+P  AL  A  RS   GDPEFLPL+RRL+R LP D+R
Sbjct: 51  VRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFLPLLRRLSRLLPVDVR 110

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           VLDIA AP  FDARFSALRRHY YRLSTAPYGV+P QARYVT WPRELD+D+M+ ASR+L
Sbjct: 111 VLDIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRELDLDSMSAASRDL 170

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           LGL +FA FCR R GATTIR+LQRL+WSR G+L+TA ++ADAFCWSMVRSL+GALLAVG+
Sbjct: 171 LGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMVRSLIGALLAVGD 230

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           HRRT  WC ELLT  +RSSDF  APAHGL   +VDYPPDD+LA R +ITRDLRS
Sbjct: 231 HRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVITRDLRS 284


>tr|B8ZSH4|B8ZSH4_MYCLB Tax_Id=561304 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Mycobacterium leprae]
          Length = 249

 Score =  363 bits (932), Expect = 8e-99
 Identities = 174/234 (74%), Positives = 196/234 (83%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRLRAAGRTD GVHATGQVAH D+P  AL  A  RS   GDPEFLPL+RRL+R LP D+R
Sbjct: 14  VRLRAAGRTDTGVHATGQVAHVDIPGTALSKANPRSPHTGDPEFLPLLRRLSRLLPVDVR 73

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           VLDIA AP  FDARFSALRRHY YRLSTAPYGV+P QARYVT WPRELD+D+M+ ASR+L
Sbjct: 74  VLDIACAPVGFDARFSALRRHYRYRLSTAPYGVQPNQARYVTAWPRELDLDSMSAASRDL 133

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           LGL +FA FCR R GATTIR+LQRL+WSR G+L+TA ++ADAFCWSMVRSL+GALLAVG+
Sbjct: 134 LGLRDFAVFCRHRHGATTIRELQRLEWSREGYLITAHITADAFCWSMVRSLIGALLAVGD 193

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           HRRT  WC ELLT  +RSSDF  APAHGL   +VDYPPDD+LA R +ITRDLRS
Sbjct: 194 HRRTIGWCGELLTKASRSSDFTTAPAHGLTFIRVDYPPDDELAERAVITRDLRS 247


>tr|A4TEJ1|A4TEJ1_MYCGI Tax_Id=350054 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium gilvum]
          Length = 298

 Score =  340 bits (873), Expect = 6e-92
 Identities = 167/234 (71%), Positives = 193/234 (82%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           V  RAAGRTD+GVHATGQVAHAD+P DALP+AY R+ RAG+PEF PLVRRL R L  D+R
Sbjct: 61  VLTRAAGRTDSGVHATGQVAHADIPTDALPHAYPRTVRAGEPEFGPLVRRLGRMLTEDVR 120

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V  I RA   FDARFSALRRHYVYRL+TAPYGVEP +AR+VT WPR LD+DAM  A++ +
Sbjct: 121 VRGIVRAAPGFDARFSALRRHYVYRLTTAPYGVEPAEARFVTAWPRPLDVDAMAGAAQNV 180

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           LGLH+FAAFCR R+GATTIR+LQRLD  R+G  ++  VSADAFCW+MVRSLVGALLAVGE
Sbjct: 181 LGLHDFAAFCRHRDGATTIRELQRLDCVRDGDRISVHVSADAFCWNMVRSLVGALLAVGE 240

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           HRR   WC +LL A  RSSDFAAAPA GL L  VDYPPDD+LA+R L+TRD+R+
Sbjct: 241 HRRDDTWCVQLLHARHRSSDFAAAPARGLTLVGVDYPPDDELAARNLVTRDVRT 294


>tr|A1T522|A1T522_MYCVP Tax_Id=350058 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium vanbaalenii]
          Length = 299

 Score =  337 bits (865), Expect = 5e-91
 Identities = 168/231 (72%), Positives = 187/231 (80%)

Query: 4   RAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLRVLD 63
           RAAGRTD+GVHATGQVAH DVP DALP AY R+ R G+ EF PLVRRL R LP D+RV +
Sbjct: 65  RAAGRTDSGVHATGQVAHVDVPADALPYAYPRTTRPGEAEFGPLVRRLGRMLPEDVRVRE 124

Query: 64  IARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASRELLGL 123
           I RA   FDARFSALRRHY+YRLSTAPYGVEP +AR+VT WPR LD+ AM  A+REL+GL
Sbjct: 125 ITRAAPGFDARFSALRRHYLYRLSTAPYGVEPAEARFVTPWPRPLDVAAMAAAARELVGL 184

Query: 124 HNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGEHRR 183
           H+FAAFCR R+GATTIR+LQRLD  R+G  V   VSADAFCW+MVRSLVGALLAVGEHRR
Sbjct: 185 HDFAAFCRHRDGATTIRELQRLDCVRDGDRVEVHVSADAFCWNMVRSLVGALLAVGEHRR 244

Query: 184 TPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
              WC  LL AT RSSDFAAAPA GL L  VDYPPD QL +R L+TRDLR+
Sbjct: 245 DAAWCAALLDATGRSSDFAAAPARGLTLVGVDYPPDAQLEARNLVTRDLRT 295


>tr|A0QSM0|A0QSM0_MYCS2 Tax_Id=246196 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Mycobacterium smegmatis]
          Length = 291

 Score =  337 bits (864), Expect = 7e-91
 Identities = 164/231 (70%), Positives = 189/231 (81%)

Query: 4   RAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLRVLD 63
           R AGRTD GVHATGQVAH DVP +ALP+AY R  R  D EF PLVRRLA FLPAD+RV D
Sbjct: 55  RVAGRTDTGVHATGQVAHVDVPAEALPHAYPRHTRPTDAEFTPLVRRLAGFLPADVRVRD 114

Query: 64  IARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASRELLGL 123
           I RAP  FDARFSALRRHYVYRL+TAPYG EP + R+VT W R LD+DAM  A++ELLGL
Sbjct: 115 IVRAPAGFDARFSALRRHYVYRLTTAPYGPEPHETRFVTPWTRPLDVDAMNAAAQELLGL 174

Query: 124 HNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGEHRR 183
           ++FAAFCR R GATTIRDLQRL+W RNG  + A V+ADAFCW+MVRSLVGALL VGE RR
Sbjct: 175 NDFAAFCRYRAGATTIRDLQRLEWVRNGFYINAYVTADAFCWNMVRSLVGALLKVGEGRR 234

Query: 184 TPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           +P+W  ELL AT+RSS+F AAPA GL LA VDYPPDD+L +R ++TRD+R+
Sbjct: 235 SPEWTAELLGATSRSSEFPAAPARGLTLAAVDYPPDDELEARNVVTRDVRT 285


>tr|B1MG97|B1MG97_MYCA9 Tax_Id=561007 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Mycobacterium abscessus]
          Length = 294

 Score =  319 bits (817), Expect = 2e-85
 Identities = 165/235 (70%), Positives = 182/235 (77%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           V+L AAGRTDAGVHATGQVAH DVPV  LP    R   AG PEF  LVRRL+RFLP+D+R
Sbjct: 57  VQLYAAGRTDAGVHATGQVAHLDVPVACLPGLRGRYRPAGAPEFDRLVRRLSRFLPSDVR 116

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           VLDI+RAP  FDARFSALRRHY YRLSTA +GV P     V  W R LD+DAM  ASR L
Sbjct: 117 VLDISRAPAHFDARFSALRRHYEYRLSTASFGVLPLARHDVVGWHRPLDVDAMNEASRNL 176

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           LGL +FAAFCR REGATTIR+LQR DW  +G  +TA VSADAFCWSMVRSLVGA+LAVGE
Sbjct: 177 LGLRDFAAFCRHREGATTIRELQRFDWGVDGQRLTAYVSADAFCWSMVRSLVGAVLAVGE 236

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRSR 235
            RR   WC +LL    RSSDFAAAPA GL L  VDYPPDDQ+A+RV+ITRD+R R
Sbjct: 237 GRRPVQWCVDLLNKERRSSDFAAAPARGLTLVGVDYPPDDQMAARVMITRDVRIR 291


>tr|C1B043|C1B043_RHOOB Tax_Id=632772 (truA)RecName:
           Full=Pseudouridylate synthase; EC=5.4.99.-;[Rhodococcus
           opacus]
          Length = 270

 Score =  280 bits (717), Expect = 7e-74
 Identities = 146/234 (62%), Positives = 173/234 (73%), Gaps = 11/234 (4%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           ++L  AGRTDAGVHATGQVAH DVPV+ALP+  SR           LVRRLARFLP D+R
Sbjct: 40  LQLTVAGRTDAGVHATGQVAHVDVPVEALPDEPSR-----------LVRRLARFLPKDVR 88

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           +  I+ AP  FDARFSA+RRHY YRL++A YG +P +AR    +P+ LD++ M  AS  L
Sbjct: 89  IKQISFAPEHFDARFSAMRRHYEYRLTSAVYGADPLRARDTVSYPKILDLELMRSASATL 148

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           LGLH+FAAFC+RREGATT+RDLQR DW R+G + TA VSADAFCWSMVRSLVGA+LAVGE
Sbjct: 149 LGLHDFAAFCKRREGATTVRDLQRFDWERDGDVFTAFVSADAFCWSMVRSLVGAVLAVGE 208

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
            RR  DW   LL  T+RSS    APAHGL L +VDYP    LA+R  ITRD+R+
Sbjct: 209 GRRDLDWIEGLLRETSRSSSILVAPAHGLCLVRVDYPEAADLAARNRITRDVRT 262


>tr|Q0S3E5|Q0S3E5_RHOSR Tax_Id=101510 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Rhodococcus sp.]
          Length = 297

 Score =  280 bits (716), Expect = 9e-74
 Identities = 147/234 (62%), Positives = 172/234 (73%), Gaps = 11/234 (4%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           ++L  AGRTDAGVHATGQVAH DVPVDALP+  SR           LVRRLARFLP D+R
Sbjct: 67  LQLTVAGRTDAGVHATGQVAHVDVPVDALPDDPSR-----------LVRRLARFLPKDVR 115

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           +  IA AP  FDARFSA+RRHY YRL++A YG +P +AR    +P+ LD++ M  AS  L
Sbjct: 116 IKRIAFAPEHFDARFSAMRRHYEYRLTSAVYGADPLRARDTVSYPKVLDLELMRSASATL 175

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           LGLH+FAAFC+RREGATT+RDLQR DW R+G + TA VSADAFCWSMVRSLVGA+LAVGE
Sbjct: 176 LGLHDFAAFCKRREGATTVRDLQRFDWERDGDVFTAFVSADAFCWSMVRSLVGAVLAVGE 235

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
            RR   W   LL   +RSS    APAHGL L +VDYP D  LA+R  ITRD+R+
Sbjct: 236 GRRDLGWIEGLLQEKSRSSSILVAPAHGLSLVRVDYPDDADLAARNKITRDVRT 289


>tr|C0ZW56|C0ZW56_RHOE4 Tax_Id=234621 (truA)RecName:
           Full=Pseudouridylate synthase; EC=5.4.99.-;[Rhodococcus
           erythropolis]
          Length = 294

 Score =  272 bits (695), Expect = 3e-71
 Identities = 142/233 (60%), Positives = 169/233 (72%), Gaps = 11/233 (4%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           V+L  AGRTDAGVHATGQVAH DVP + LP+  SR           LVRRLARFLP D+R
Sbjct: 62  VQLTVAGRTDAGVHATGQVAHVDVPGELLPDDPSR-----------LVRRLARFLPKDVR 110

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V  I+  P  FDARFSA+RR+Y YR++ A +GVEP +AR    +P+ LD+ AM  AS  L
Sbjct: 111 VKQISVVPGDFDARFSAIRRYYEYRVTNAAFGVEPLRARDTVSYPKPLDLAAMQEASNRL 170

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           LGLHNFAAFC+RREGATT+R+LQR DW++ G + TA V+ADAFCWSMVRSLVGA+L+VGE
Sbjct: 171 LGLHNFAAFCKRREGATTVRELQRFDWAQEGTVFTAYVNADAFCWSMVRSLVGAVLSVGE 230

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLR 233
            RRT DW   LL  T RSS    APAHGL L +VDYP   +LA+R  ITR+ R
Sbjct: 231 GRRTADWVAGLLDETLRSSSILVAPAHGLSLVRVDYPDYSELAARNAITRETR 283


>tr|C3JGZ4|C3JGZ4_RHOER Tax_Id=596309 (truA)RecName:
           Full=Pseudouridylate synthase; EC=5.4.99.-;[Rhodococcus
           erythropolis SK121]
          Length = 294

 Score =  272 bits (695), Expect = 3e-71
 Identities = 142/233 (60%), Positives = 170/233 (72%), Gaps = 11/233 (4%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           V+L  AGRTDAGVHATGQVAH DVP + LP+  SR           LVRRLARFLP D+R
Sbjct: 62  VQLTVAGRTDAGVHATGQVAHVDVPGELLPDDPSR-----------LVRRLARFLPKDVR 110

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V  I+  P  FDARFSA+RR+Y YR++ A +GVEP +AR    +P+ LD+ AM  AS  L
Sbjct: 111 VKQISVVPGDFDARFSAMRRYYEYRVTNAAFGVEPLRARDTVSYPKPLDLGAMQEASNRL 170

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           LGLHNFAAFC+RREGATT+R+LQR DW++ G + TA V+ADAFCWSMVRSLVGA+L+VGE
Sbjct: 171 LGLHNFAAFCKRREGATTVRELQRFDWTQVGTVFTAYVNADAFCWSMVRSLVGAVLSVGE 230

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLR 233
            RRT DW   LL  T+RSS    APAHGL L +VDYP   +LA+R  ITR+ R
Sbjct: 231 GRRTADWVAGLLDETSRSSSILVAPAHGLSLVRVDYPDYSELAARNAITRETR 283


>tr|D0L2F0|D0L2F0_GORB4 Tax_Id=526226 SubName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12;[Gordonia
           bronchialis]
          Length = 291

 Score =  268 bits (685), Expect = 4e-70
 Identities = 145/234 (61%), Positives = 167/234 (71%), Gaps = 7/234 (2%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRL  AGRTDAGVHATGQV H D+PV AL    +RS   GDP  L  V RLA+ LP D+R
Sbjct: 56  VRLTVAGRTDAGVHATGQVCHTDIPVSALQ---TRSI-GGDPSLL--VGRLAKMLPDDVR 109

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V +IA     FDARFSALRRHY YRL+ A +G EP  AR    W R LD+DAM  AS  L
Sbjct: 110 VKEIASVSGDFDARFSALRRHYEYRLTDARWGAEPIHARTTATWRRPLDVDAMNAASASL 169

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRN-GHLVTAQVSADAFCWSMVRSLVGALLAVG 179
           LGL++FAAFCRRREGATTIRDLQ+  W+R+ G ++  QVSADAFCWSMVRSLVGA+ +VG
Sbjct: 170 LGLNDFAAFCRRREGATTIRDLQQFSWTRHAGGVLVGQVSADAFCWSMVRSLVGAVASVG 229

Query: 180 EHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLR 233
           + RR  DWCR LL  T RSS    A A GL L +VDYP DD+LA R  +TRD+R
Sbjct: 230 DGRRDIDWCRGLLAETQRSSQVPVADACGLCLVRVDYPADDELAERNTVTRDVR 283


>sp|Q5Z1K7|TRUA_NOCFA Tax_Id=37329 (truA)RecName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12; AltName:
           Full=tRNA-uridine isomerase I; AltName: Full=tRNA
           pseudouridylate synthase I;[Nocardia farcinica]
          Length = 257

 Score =  266 bits (681), Expect = 1e-69
 Identities = 143/234 (61%), Positives = 164/234 (70%), Gaps = 14/234 (5%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           ++L  AGRTDAGVHA GQVAH D            +A    P+   LV RLARFLP D+R
Sbjct: 28  IQLTVAGRTDAGVHAEGQVAHFDT-----------AAEFDGPQ---LVHRLARFLPKDVR 73

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V      P  FDARFSA+RRHYVYRL+TAPYG EP  AR V      +D+DAM  AS  L
Sbjct: 74  VKRADVVPPDFDARFSAIRRHYVYRLTTAPYGAEPLAARSVVPCKSAVDVDAMRRASGLL 133

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           LGLH+FAAFCRRREGATT+R+LQR DW R G L+ A VSADAFCWSMVRSLVGA+LAVGE
Sbjct: 134 LGLHDFAAFCRRREGATTVRELQRFDWERQGDLLLAHVSADAFCWSMVRSLVGAVLAVGE 193

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
            RR+P+W   LL  T RSS    APAHGL L  VDYP DD+LA+R + TR++RS
Sbjct: 194 GRRSPEWVAGLLRETQRSSSVTVAPAHGLSLVAVDYPADDELAARNVQTREMRS 247


>tr|C2AM23|C2AM23_TSUPA Tax_Id=521096 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Tsukamurella paurometabola DSM
           20162]
          Length = 301

 Score =  253 bits (645), Expect = 2e-65
 Identities = 139/234 (59%), Positives = 159/234 (67%), Gaps = 16/234 (6%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           V+L  AGRTDAGVHATGQVAH D  + ALP                LVRRLAR LP D+R
Sbjct: 71  VQLTVAGRTDAGVHATGQVAHVDTDL-ALPEG--------------LVRRLARMLPQDVR 115

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V  IA AP  FDARFSALRRHY YRL+ APYG  P +AR    W R +D++ M  AS  L
Sbjct: 116 VTAIAEAPAEFDARFSALRRHYEYRLTDAPYGANPLRARDTAPWRRPVDVERMQAASDAL 175

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGH-LVTAQVSADAFCWSMVRSLVGALLAVG 179
           LGLH+FAAFCRRREGATT+R+LQR  W R+   + TA+VSADAFCWSMVRSLVGA+ AVG
Sbjct: 176 LGLHDFAAFCRRREGATTVRELQRFAWRRDADGVCTAEVSADAFCWSMVRSLVGAVAAVG 235

Query: 180 EHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLR 233
           E RR+ +W   LL    RSS    A A GL L +VDYP DD+LA R  ITR+ R
Sbjct: 236 EGRRSVEWVAGLLDERERSSAINVAAACGLTLVRVDYPADDELAERNRITREKR 289


>tr|C6WLZ4|C6WLZ4_ACTMD Tax_Id=446462 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Actinosynnema mirum]
          Length = 314

 Score =  249 bits (636), Expect = 2e-64
 Identities = 134/235 (57%), Positives = 160/235 (68%), Gaps = 14/235 (5%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           V L  AGRTDAGVHA GQVAH D+P             A D   LP  +RLAR LPAD+R
Sbjct: 78  VVLTVAGRTDAGVHAAGQVAHVDLP------------EAADVAGLP--KRLARALPADVR 123

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V      P AFDARF+ALRRHY YR++ AP+G  P +      WPR+LD+ AM  AS  +
Sbjct: 124 VFSARVVPAAFDARFAALRRHYEYRVTDAPFGAHPLRRLDTLAWPRQLDVAAMNAASGLM 183

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           LG  +F A+CRRREGATTIR+LQRL+W R G L+TA VSADAFC SMVRSLVGALLAVGE
Sbjct: 184 LGERDFCAYCRRREGATTIRELQRLEWVREGDLLTAFVSADAFCHSMVRSLVGALLAVGE 243

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRSR 235
            R+  +W   LL+  +RSS+   AP HGL L +VDYP D+ LA+R  ITR++R R
Sbjct: 244 GRKPVEWPASLLSLHSRSSEVTVAPPHGLSLVRVDYPADEDLAARAEITRNIRVR 298


>tr|C0U7Z3|C0U7Z3_9ACTO Tax_Id=526225 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Geodermatophilus obscurus DSM
           43160]
          Length = 260

 Score =  249 bits (635), Expect = 2e-64
 Identities = 141/235 (60%), Positives = 156/235 (66%), Gaps = 13/235 (5%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLP-LVRRLARFLPADL 59
           V L  AGRTDAGVHATGQVAH DVP            RA   E  P LVRRL   LP D+
Sbjct: 38  VSLTVAGRTDAGVHATGQVAHGDVP------------RAVWAEQRPRLVRRLRGVLPPDI 85

Query: 60  RVLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASRE 119
            V  +  AP  FDARF ALRRHYVYRL+ A  G  P +      WPR LD DAM VA+  
Sbjct: 86  AVHTVEEAPRDFDARFGALRRHYVYRLTDADSGPPPLRRADTVGWPRRLDADAMAVAAEL 145

Query: 120 LLGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVG 179
           LLGLH+FAAFCRRREGATTIR L  L  +R G LVT + SADAFC SMVRSLVGAL AVG
Sbjct: 146 LLGLHDFAAFCRRREGATTIRTLLTLAVTREGDLVTVRASADAFCHSMVRSLVGALTAVG 205

Query: 180 EHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           E RR P+W   LLT+T RSS+    P  GL L  VDYPPDD+LA+R ++TR LRS
Sbjct: 206 EGRRPPEWPAALLTSTERSSEVPVVPPGGLTLVGVDYPPDDELAARAVLTRGLRS 260


>tr|C7MTX7|C7MTX7_SACVD Tax_Id=471857 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Saccharomonospora viridis]
          Length = 300

 Score =  236 bits (602), Expect = 2e-60
 Identities = 134/235 (57%), Positives = 159/235 (67%), Gaps = 6/235 (2%)

Query: 6   AGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGD--PEFLPLVRRLARFLPADLRVLD 63
           AGRTDAGVHA GQV H DV   A     SR   + D  P+      RL R LPAD+RVL 
Sbjct: 64  AGRTDAGVHAIGQVVHVDVTRLA-GETRSRMPISSDGLPDLDWARYRLNRVLPADVRVLS 122

Query: 64  IARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASRELLGL 123
           I RAP  FDARFSA++RHY Y++S AP+GV P + R    WPR L +DAM  A+  LLGL
Sbjct: 123 IRRAPAGFDARFSAVKRHYRYQVSDAPWGVSPLRRRDTLAWPRPLSVDAMNEAASSLLGL 182

Query: 124 HNFAAFCRRREGATTIRDLQRLDWSR-NGHLVTAQVSADAFCWSMVRSLVGALLAVGEHR 182
           H+FAAFC+RREGATTIR+L  L W R + + +   VSADAFC SMVRSLVGALL VG+ R
Sbjct: 183 HDFAAFCKRREGATTIRELMELRWCRVDEYELHLSVSADAFCHSMVRSLVGALLWVGDGR 242

Query: 183 RTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRSRTD 237
           R   W  E+L +  RSS    APAHGL L KVDYPPDD+LASR   TR++R  ++
Sbjct: 243 RDVGWPLEVLRSRQRSS--VVAPAHGLTLVKVDYPPDDELASRAEKTRNIRDESE 295


>tr|C8XCL6|C8XCL6_NAKMY Tax_Id=479431 SubName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12;[Nakamurella
           multipartita]
          Length = 305

 Score =  235 bits (600), Expect = 3e-60
 Identities = 138/238 (57%), Positives = 159/238 (66%), Gaps = 4/238 (1%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRS-ARAGDPEF---LPLVRRLARFLP 56
           VRL  AGRTDAGVHA GQVAH D+P  AL     R  A   DPE    L L+RRL   LP
Sbjct: 67  VRLVVAGRTDAGVHAAGQVAHVDLPQAALLTVIPRDRADHPDPERAGRLGLLRRLGGLLP 126

Query: 57  ADLRVLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVA 116
            D+RV  +  AP  FDARFSALRR Y YR+ TA +GVEP   R+V    R LD++AMT+A
Sbjct: 127 PDVRVRAVLAAPEGFDARFSALRRRYRYRIGTAEWGVEPADRRFVYARRRTLDVEAMTLA 186

Query: 117 SRELLGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALL 176
           ++ L+GLH+F AFCR REGATTIRDLQ+L  +R G  V   V ADAFC SMVR+LVG+LL
Sbjct: 187 AQALVGLHDFHAFCRPREGATTIRDLQKLTVTRAGDEVRIDVVADAFCHSMVRALVGSLL 246

Query: 177 AVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           AVGE R       ELL A  R+S FA APAHGL L  VDYPP  +LA R   TR +RS
Sbjct: 247 AVGELRMPTARPAELLAAGERTSAFAVAPAHGLSLVGVDYPPPAELARRAHDTRAVRS 304


>tr|A4FPJ0|A4FPJ0_SACEN Tax_Id=405948 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Saccharopolyspora erythraea]
          Length = 296

 Score =  234 bits (596), Expect = 8e-60
 Identities = 128/235 (54%), Positives = 157/235 (66%), Gaps = 12/235 (5%)

Query: 6   AGRTDAGVHATGQVAHADVPVDALPNAYSRSARA-----GDPEFLPLVRRLARFLPADLR 60
           AGRTD GVHATGQV H DV    +P+A     R      G P+   +  R  R LP D+R
Sbjct: 63  AGRTDTGVHATGQVVHVDV----VPSAPDEGGRLPLDEHGIPDLDRMRHRWNRILPGDVR 118

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           VL    AP  FDARFSA+RRHY Y++S AP+GV+P + R    W R LD+DA+  AS +L
Sbjct: 119 VLGARVAPAGFDARFSAMRRHYRYQVSDAPWGVDPLRRRDTLSWNRPLDVDALNAASEDL 178

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSR-NGHLVTAQVSADAFCWSMVRSLVGALLAVG 179
           LGL++FAAFC++REGATT+R+LQR  W R   HL+ A+VSADAFC SMVRSLVGALL VG
Sbjct: 179 LGLNDFAAFCKQREGATTVRELQRFSWERAEPHLLVARVSADAFCHSMVRSLVGALLMVG 238

Query: 180 EHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           + RR+  W  E L A  R+S    APAHGL L  VDYP D++LA R   TR +R+
Sbjct: 239 DGRRSRTWPAEALRAAERTS--TVAPAHGLTLVGVDYPSDEELADRAARTRAVRT 291


>tr|C6R9B4|C6R9B4_9CORY Tax_Id=553206 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Corynebacterium tuberculostearicum SK141]
          Length = 297

 Score =  234 bits (596), Expect = 8e-60
 Identities = 131/239 (54%), Positives = 155/239 (64%), Gaps = 11/239 (4%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           V L  AGRTDAGVHA GQVAH DVP + L    ++ + AG+P    LVRRLA+ LP D+R
Sbjct: 63  VPLTVAGRTDAGVHARGQVAHVDVPTEML----AQRSVAGEPG--KLVRRLAKLLPEDVR 116

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V     AP  FDARFSALRRHYVYR++T P G  P +AR    W + +DIDAM  A+  L
Sbjct: 117 VHGCEFAPAGFDARFSALRRHYVYRITTNPRGALPTRARDTAEWIKPVDIDAMQEAATAL 176

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDW-----SRNGHLVTAQVSADAFCWSMVRSLVGAL 175
           +GLH+FAAFC+ +  ATTIR+LQ   W          L  A+VSADAFCWSMVRSLVG  
Sbjct: 177 VGLHDFAAFCKAKPNATTIRELQEFSWRDVSTPEEPELYEARVSADAFCWSMVRSLVGCC 236

Query: 176 LAVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           L VGE RR  D+   LL  T RSS    APA GL L  VDYP  D+LA+R  +TR+ RS
Sbjct: 237 LRVGEGRRDTDFAAALLQETKRSSSIPVAPAKGLSLVAVDYPAADKLAARAEVTRERRS 295


>tr|C2CQ41|C2CQ41_CORST Tax_Id=525268 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Corynebacterium striatum ATCC 6940]
          Length = 285

 Score =  234 bits (596), Expect = 8e-60
 Identities = 128/242 (52%), Positives = 156/242 (64%), Gaps = 11/242 (4%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           V L  AGRTDAGVH+ GQVAH DVP +AL     + +  GDP    LVRRLA+ LP D+R
Sbjct: 46  VELTVAGRTDAGVHSAGQVAHFDVPSEAL----DQRSIDGDPA--KLVRRLAKLLPEDVR 99

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V     AP  FDARFSAL+RHYVYR++T P G  P +AR    WP+ +DIDAM  A+  L
Sbjct: 100 VHACTAAPEGFDARFSALQRHYVYRITTHPRGALPTRARDTAQWPKPVDIDAMQEAATTL 159

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDW-----SRNGHLVTAQVSADAFCWSMVRSLVGAL 175
           +GLH+FAAFC+ +  ATTIRDL   +W          L  A+V ADAFCWSMVRSLVG  
Sbjct: 160 VGLHDFAAFCKAKPHATTIRDLHSFEWVDVSTPTEPQLYEARVCADAFCWSMVRSLVGCC 219

Query: 176 LAVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRSR 235
           L VGE  R  D+   +L  + RSS    APA GL L +VDYP D++LA+R  +TRD R+ 
Sbjct: 220 LRVGEGARDVDFATAMLAESQRSSQIPLAPAKGLSLVRVDYPADEELAARAAVTRDRRAA 279

Query: 236 TD 237
            D
Sbjct: 280 DD 281


>tr|C2BK37|C2BK37_9CORY Tax_Id=525264 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 297

 Score =  234 bits (596), Expect = 8e-60
 Identities = 131/239 (54%), Positives = 155/239 (64%), Gaps = 11/239 (4%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           V L  AGRTDAGVHA GQVAH DVP + L    ++ + AG+P    LVRRLA+ LP D+R
Sbjct: 63  VPLTVAGRTDAGVHARGQVAHVDVPTEML----AQRSVAGEPG--KLVRRLAKLLPEDVR 116

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V     AP  FDARFSALRRHYVYR++T P G  P +AR    W + +DIDAM  A+  L
Sbjct: 117 VHGCEFAPAGFDARFSALRRHYVYRITTNPRGALPTRARDTAEWIKPVDIDAMQEAATAL 176

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDW-----SRNGHLVTAQVSADAFCWSMVRSLVGAL 175
           +GLH+FAAFC+ +  ATTIR+LQ   W          L  A+VSADAFCWSMVRSLVG  
Sbjct: 177 VGLHDFAAFCKAKPNATTIRELQEFSWRDASTPEEPELFEARVSADAFCWSMVRSLVGCC 236

Query: 176 LAVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           L VGE RR  D+   LL  T RSS    APA GL L  VDYP  D+LA+R  +TR+ RS
Sbjct: 237 LRVGEGRRDADFAAALLQETKRSSSIPVAPAKGLSLVAVDYPAADRLAARAEVTRERRS 295


>sp|Q8FS31|TRUA_COREF Tax_Id=152794 (truA)RecName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12; AltName:
           Full=tRNA-uridine isomerase I; AltName: Full=tRNA
           pseudouridylate synthase I;[Corynebacterium efficiens]
          Length = 282

 Score =  232 bits (592), Expect = 2e-59
 Identities = 127/238 (53%), Positives = 154/238 (64%), Gaps = 11/238 (4%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           V L  AGRTDAGVHA GQVAH D+P ++L     + +  GDP    LVRRL+R LP D+R
Sbjct: 44  VELTVAGRTDAGVHAAGQVAHFDIPRESL----QQRSIDGDPT--KLVRRLSRLLPEDIR 97

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V  +  AP  FDARFSALRRHYVYR++T P G  P + R    WP+ +DI AM  A+  L
Sbjct: 98  VHGVNYAPEGFDARFSALRRHYVYRITTHPAGPLPTRVRDTAAWPKPVDIQAMQTAADVL 157

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDW-----SRNGHLVTAQVSADAFCWSMVRSLVGAL 175
           +GLH+F AFC+ +  A+T+R+LQ   W          L  A V ADAFCWSMVRSLVG+ 
Sbjct: 158 IGLHDFVAFCKAKPNASTVRELQEFTWHDVSTPTEPQLYEAHVVADAFCWSMVRSLVGSC 217

Query: 176 LAVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLR 233
           +AVGE RR  D+  +LLTAT RS D   APA GL L  VDYP DDQL +R   TR +R
Sbjct: 218 MAVGEGRRAGDFTAQLLTATERSPDVPVAPAKGLSLVGVDYPDDDQLRARAEETRAVR 275


>tr|C8NMD3|C8NMD3_COREF Tax_Id=196164 (truA)SubName: Full=tRNA
           pseudouridine synthase A; EC=4.2.1.70;[Corynebacterium
           efficiens YS-314]
          Length = 282

 Score =  232 bits (592), Expect = 2e-59
 Identities = 127/238 (53%), Positives = 154/238 (64%), Gaps = 11/238 (4%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           V L  AGRTDAGVHA GQVAH D+P ++L     + +  GDP    LVRRL+R LP D+R
Sbjct: 44  VELTVAGRTDAGVHAAGQVAHFDIPRESL----QQRSIDGDPT--KLVRRLSRLLPEDIR 97

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V  +  AP  FDARFSALRRHYVYR++T P G  P + R    WP+ +DI AM  A+  L
Sbjct: 98  VHGVNYAPEGFDARFSALRRHYVYRITTHPAGPLPTRVRDTAAWPKPVDIQAMQTAADVL 157

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDW-----SRNGHLVTAQVSADAFCWSMVRSLVGAL 175
           +GLH+F AFC+ +  A+T+R+LQ   W          L  A V ADAFCWSMVRSLVG+ 
Sbjct: 158 IGLHDFVAFCKAKPNASTVRELQEFTWHDVSTPTEPQLYEAHVVADAFCWSMVRSLVGSC 217

Query: 176 LAVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLR 233
           +AVGE RR  D+  +LLTAT RS D   APA GL L  VDYP DDQL +R   TR +R
Sbjct: 218 MAVGEGRRAGDFTAQLLTATERSPDVPVAPAKGLSLVGVDYPDDDQLRARAEETRAVR 275


>sp|P60349|TRUA_CORDI Tax_Id=1717 (truA)RecName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12; AltName:
           Full=tRNA-uridine isomerase I; AltName: Full=tRNA
           pseudouridylate synthase I;[Corynebacterium diphtheriae]
          Length = 288

 Score =  230 bits (587), Expect = 9e-59
 Identities = 128/242 (52%), Positives = 154/242 (63%), Gaps = 11/242 (4%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           + L  AGRTDAGVHATGQVAH DV     P A    + AGDP    L+RRLAR +P D+R
Sbjct: 49  IDLTVAGRTDAGVHATGQVAHFDVD----PAALETRSIAGDPA--RLIRRLARLMPDDVR 102

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           + +++  P  FDARFSALRRHYVYR++T P G  P +AR    WPR +DI AM  A+  L
Sbjct: 103 IHNMSFVPAEFDARFSALRRHYVYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADAL 162

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDW-----SRNGHLVTAQVSADAFCWSMVRSLVGAL 175
           +G+H+FAAFC+ REGA+TIRDLQ   W      +   L  A V+ADAFCWSMVRSLVGA 
Sbjct: 163 IGMHDFAAFCKYREGASTIRDLQEFTWHDVSTPQEPQLYEAHVTADAFCWSMVRSLVGAC 222

Query: 176 LAVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRSR 235
           L VGE +R   +   LL  T RSS    A A GL L  VDYP DDQL +R    R  R+ 
Sbjct: 223 LVVGEGKRADGFTEHLLGETKRSSSIPVAAACGLSLVGVDYPSDDQLGARAEQARAYRTH 282

Query: 236 TD 237
            +
Sbjct: 283 DE 284


>tr|Q4JTC5|Q4JTC5_CORJK Tax_Id=306537 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Corynebacterium jeikeium]
          Length = 328

 Score =  226 bits (576), Expect = 2e-57
 Identities = 127/239 (53%), Positives = 153/239 (64%), Gaps = 12/239 (5%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           + L  AGRTDAGVHA+GQV HAD+PVDA      RS     PE   LVRRL+R LPAD+R
Sbjct: 71  IELVVAGRTDAGVHASGQVCHADIPVDAFEQ---RSLTR--PE--DLVRRLSRMLPADVR 123

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           +   + AP  FDARFSALRRHY+YR++T P G  P +AR    W   +D++    AS  L
Sbjct: 124 LHGASVAPQGFDARFSALRRHYIYRVTTHPAGPVPVRARDTAAWRHPIDLEKTQAASDAL 183

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDW-----SRNGHLVTAQVSADAFCWSMVRSLVGAL 175
           +GL++FAAFC+ REGATT+R+LQ   W             A V+ADAFCWSMVRSLVGA 
Sbjct: 184 IGLNDFAAFCKAREGATTVRELQEFRWVDVSTEAEPQTYEAHVTADAFCWSMVRSLVGAA 243

Query: 176 LAVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           L VG  +R  D+   LL  T RSS    APA GL L +VDYP D++LA R L TR  RS
Sbjct: 244 LTVGSGKRPDDFTPGLLKETKRSSAVPVAPAEGLNLVRVDYPADEELAERALTTRAKRS 302


>tr|Q47LM3|Q47LM3_THEFY Tax_Id=269800 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Thermobifida fusca]
          Length = 296

 Score =  225 bits (574), Expect = 3e-57
 Identities = 124/233 (53%), Positives = 152/233 (65%), Gaps = 12/233 (5%)

Query: 2   RLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLRV 61
           +L  AGRTDAGVHA GQVAH DVP           A   + E   L+RRLA  LP D+RV
Sbjct: 68  QLTVAGRTDAGVHARGQVAHVDVP-----------ASVWEAEGERLLRRLAGVLPPDVRV 116

Query: 62  LDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASRELL 121
             +A AP  FDARFSAL R YVYR+S AP GV+P +   V    R LD+D M  A+  LL
Sbjct: 117 TAVAPAPPGFDARFSALFRRYVYRVSDAPGGVDPLRRHEVLWHRRPLDVDRMNEAAAALL 176

Query: 122 GLHNFAAFCRRREGATTIRDLQRLDWSRNG-HLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           G H+FAA+CR+REGA+T+R+LQRL+W R   H+  A V ADAFC +MVR+LVGALLAVG+
Sbjct: 177 GEHDFAAYCRKREGASTVRELQRLEWRRESEHVYAATVQADAFCHNMVRALVGALLAVGD 236

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLR 233
            RR P+W  ++L A  R S     P HGL L +V YP D++LA+R   TR  R
Sbjct: 237 GRRPPEWPAQVLRAGVRDSAVHVVPPHGLTLEEVRYPADEELAARAAATRRFR 289


>tr|C8RUH0|C8RUH0_CORJE Tax_Id=525262 (truA)SubName: Full=tRNA
           pseudouridine synthase A; EC=4.2.1.70;[Corynebacterium
           jeikeium ATCC 43734]
          Length = 328

 Score =  223 bits (569), Expect = 1e-56
 Identities = 125/239 (52%), Positives = 152/239 (63%), Gaps = 12/239 (5%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           + L  AGRTDAGVHA+GQV HAD+P DA      RS     PE   LVRRL+R LP+D+R
Sbjct: 71  IELVVAGRTDAGVHASGQVCHADIPADAFEQ---RSLTR--PE--DLVRRLSRMLPSDVR 123

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           +   + AP  FDARFSALRRHY+YR++T P G  P +AR    W   +D++    AS  L
Sbjct: 124 LHGASVAPQGFDARFSALRRHYIYRVTTHPAGPVPVRARDTAAWRHPIDLEKTQAASDAL 183

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDW-----SRNGHLVTAQVSADAFCWSMVRSLVGAL 175
           +GL++FAAFC+ REGATT+R+LQ   W             A V+ADAFCWSMVRSLVGA 
Sbjct: 184 IGLNDFAAFCKAREGATTVRELQEFRWVDVSTEAEPQTYEAHVTADAFCWSMVRSLVGAA 243

Query: 176 LAVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           L VG  +R  D+   LL  T RSS    APA GL L +VDYP D++LA R L TR  RS
Sbjct: 244 LTVGSGKRPDDFTPGLLKETKRSSAVPVAPAEGLNLVRVDYPADEELAERALTTRAKRS 302


>tr|C0WIL8|C0WIL8_9CORY Tax_Id=525260 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Corynebacterium accolens ATCC 49725]
          Length = 293

 Score =  223 bits (569), Expect = 1e-56
 Identities = 126/239 (52%), Positives = 154/239 (64%), Gaps = 11/239 (4%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           V L  AGRTDAGVHA GQVAH DVP + L     + + A DP    LVRRLA+ LP D+R
Sbjct: 59  VPLTVAGRTDAGVHARGQVAHVDVPQEML----EQRSVANDPG--KLVRRLAKLLPEDVR 112

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V     AP  FDARFSALRRHYVYR++T+P G  P +AR    W + +DI AM  A+  L
Sbjct: 113 VHGCDFAPEGFDARFSALRRHYVYRITTSPRGALPTRARDTAEWFKPVDIGAMQDAANAL 172

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWS-----RNGHLVTAQVSADAFCWSMVRSLVGAL 175
           +GLH+FAAFC+ +  ATTIR+LQ   W          L  A+V+ADAFCWSMVRSLVG  
Sbjct: 173 VGLHDFAAFCKAKPNATTIRELQEFSWQDVSTPEEPQLFEARVTADAFCWSMVRSLVGCC 232

Query: 176 LAVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRS 234
           L+VGE RR  D+   LL  T RSS    APA GL L +VDYP   ++++R  ITR+ R+
Sbjct: 233 LSVGEGRRDVDFAAALLQETKRSSRIPVAPAKGLSLVQVDYPEAGEMSARADITREKRT 291


>tr|Q0RRP1|Q0RRP1_FRAAA Tax_Id=326424 (truA)RecName:
           Full=Pseudouridylate synthase; EC=5.4.99.-;[Frankia
           alni]
          Length = 288

 Score =  221 bits (564), Expect = 4e-56
 Identities = 125/237 (52%), Positives = 146/237 (61%), Gaps = 15/237 (6%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRL  AGRTD+GVHA GQVAH D+P D                   L RRL   L   +R
Sbjct: 62  VRLTVAGRTDSGVHAAGQVAHVDLPTDVPLGG--------------LARRLNGVLDRSVR 107

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V  +A AP  FDARFSAL R YVYR++ AP+G EP +      WPR LD+ AM  A+  L
Sbjct: 108 VTGLAPAPAGFDARFSALSRRYVYRITDAPFGAEPLRRFDTLAWPRPLDVPAMASAALLL 167

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLD-WSRNGHLVTAQVSADAFCWSMVRSLVGALLAVG 179
           +G H+FAAFCRRREGATT+R L RLD   R   +V A V ADAFC SMVR+LVGALLAVG
Sbjct: 168 VGEHDFAAFCRRREGATTVRTLLRLDVLRRPDGVVVADVEADAFCHSMVRALVGALLAVG 227

Query: 180 EHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRSRT 236
           E RR P W   +L    R      APAHGL L +V YPPD +LA+R  +TR +R  T
Sbjct: 228 EGRRPPQWPAAVLRRGLRDPAVTVAPAHGLTLVEVRYPPDTELAARAEVTRAVRVPT 284


>tr|C5VEY4|C5VEY4_9CORY Tax_Id=553207 (truA)RecName:
           Full=Pseudouridylate synthase;
           EC=5.4.99.-;[Corynebacterium matruchotii ATCC 14266]
          Length = 290

 Score =  221 bits (564), Expect = 4e-56
 Identities = 129/238 (54%), Positives = 150/238 (63%), Gaps = 11/238 (4%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           + L  AGRTDAGVHA  QVAH DVP  AL    +RS  AGDP    LVRRLAR LP D+R
Sbjct: 47  IALTVAGRTDAGVHAAAQVAHFDVPAAALD---TRSI-AGDPG--RLVRRLARLLPTDVR 100

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V     AP  FDARFSALRRHYVYRL+T P G  P +       P+ +D+ AM   + EL
Sbjct: 101 VHAATIAPPDFDARFSALRRHYVYRLTTHPRGALPTRVTDTAHHPKPVDLAAMQACAAEL 160

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSR-----NGHLVTAQVSADAFCWSMVRSLVGAL 175
           +GLH+FAAFCR R+GATTIRDLQ   W+            A V+ADAFCWSMVRSLVG  
Sbjct: 161 IGLHDFAAFCRHRDGATTIRDLQEFTWNDISTPIEPDTFEAHVTADAFCWSMVRSLVGCC 220

Query: 176 LAVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLR 233
           L VGE +R   +   LL  T+RS+    APA GL L  VDYP + QLA+R  +TR  R
Sbjct: 221 LVVGEGKRPAGFATSLLAETSRSALVPVAPAAGLSLVGVDYPDESQLAARAQVTRAQR 278


>tr|C0E0J5|C0E0J5_9CORY Tax_Id=566549 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Corynebacterium matruchotii ATCC
           33806]
          Length = 290

 Score =  221 bits (564), Expect = 4e-56
 Identities = 129/238 (54%), Positives = 150/238 (63%), Gaps = 11/238 (4%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           + L  AGRTDAGVHA  QVAH DVP  AL    +RS  AGDP    LVRRLAR LP D+R
Sbjct: 47  IALTVAGRTDAGVHAVAQVAHFDVPAAALD---TRSI-AGDPG--RLVRRLARLLPTDVR 100

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V     AP  FDARFSALRRHYVYRL+T P G  P +       P+ +D+ AM   + EL
Sbjct: 101 VHAATIAPPDFDARFSALRRHYVYRLTTHPRGALPTRVTDTAHHPKPVDLAAMQACAAEL 160

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSR-----NGHLVTAQVSADAFCWSMVRSLVGAL 175
           +GLH+FAAFCR R+GATTIRDLQ   W+            A V+ADAFCWSMVRSLVG  
Sbjct: 161 IGLHDFAAFCRHRDGATTIRDLQEFTWNDISTPIEPDTFEAHVTADAFCWSMVRSLVGCC 220

Query: 176 LAVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLR 233
           L VGE +R   +   LL  T+RS+    APA GL L  VDYP + QLA+R  +TR  R
Sbjct: 221 LVVGEGKRPAGFATSLLAETSRSALVPVAPAAGLSLVGVDYPDESQLAARAQVTRAQR 278


>sp|Q2JFE6|TRUA_FRASC Tax_Id=106370 (truA)RecName: Full=tRNA
           pseudouridine synthase A; EC=5.4.99.12; AltName:
           Full=tRNA-uridine isomerase I; AltName: Full=tRNA
           pseudouridylate synthase I;[Frankia sp.]
          Length = 274

 Score =  220 bits (561), Expect = 9e-56
 Identities = 123/234 (52%), Positives = 145/234 (61%), Gaps = 15/234 (6%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRL  AGRTD+GVHA GQVAH D+P D                   L RRL   L   +R
Sbjct: 48  VRLTVAGRTDSGVHAVGQVAHVDLPDDVPLGG--------------LARRLNGVLDRAVR 93

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           ++ +A AP  FDARFSAL R YVYR++ APYG EP +      WPR LD+ AM  A+  L
Sbjct: 94  IIGLAPAPPGFDARFSALSRRYVYRITDAPYGAEPLRRFDTLAWPRPLDVPAMAAAALFL 153

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGH-LVTAQVSADAFCWSMVRSLVGALLAVG 179
           +G H+FAAFCRRREGATT+R L RLD  R    +V A V ADAFC SMVR+LVGALLAVG
Sbjct: 154 VGEHDFAAFCRRREGATTVRTLLRLDVLRRPEGVVVADVEADAFCHSMVRALVGALLAVG 213

Query: 180 EHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLR 233
           E R+ P W   +L    R      APAHGL L  V YPPD +LA+R  +TR +R
Sbjct: 214 EGRKPPQWPAAVLHRGVRDPAVTVAPAHGLTLVDVRYPPDPELAARAEVTRAVR 267


>tr|A8LB03|A8LB03_FRASN Tax_Id=298653 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Frankia sp.]
          Length = 275

 Score =  218 bits (555), Expect = 4e-55
 Identities = 122/236 (51%), Positives = 145/236 (61%), Gaps = 14/236 (5%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           VRL  AGRTD+GVHA GQVAH D+P D                   L RRL   L   +R
Sbjct: 50  VRLTVAGRTDSGVHAAGQVAHVDIPDDTPVGG--------------LARRLNGVLDRAVR 95

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           V  +A AP  FDARFSAL R YVYR++ APYG +P +       PR LD+ AM  A+  L
Sbjct: 96  VKGLAPAPDGFDARFSALSRRYVYRITDAPYGADPLRRFDTLASPRPLDVPAMAEAALLL 155

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWSRNGHLVTAQVSADAFCWSMVRSLVGALLAVGE 180
           LG H+FAAFCRRREGATT+R L RLD SR+  ++ A V ADAFC SMVR+L GAL+AVGE
Sbjct: 156 LGEHDFAAFCRRREGATTVRTLLRLDVSRSRDVILADVEADAFCHSMVRALAGALVAVGE 215

Query: 181 HRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLRSRT 236
            RR P+W   +L    R       PAHGL L +V YPPD  LA+R  +TR +R  T
Sbjct: 216 GRRRPEWVAAVLGRGMRDPAVTVLPAHGLTLVEVRYPPDAALAARAQVTRAVRVPT 271


>tr|B1VEY4|B1VEY4_CORU7 Tax_Id=504474 RecName: Full=Pseudouridylate
           synthase; EC=5.4.99.-;[Corynebacterium urealyticum]
          Length = 324

 Score =  218 bits (554), Expect = 6e-55
 Identities = 122/238 (51%), Positives = 148/238 (62%), Gaps = 12/238 (5%)

Query: 1   VRLRAAGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGDPEFLPLVRRLARFLPADLR 60
           V L  AGRTDAGVHA GQV HAD+P +A    +   AR  D     LVRRL+R LP D+R
Sbjct: 92  VELTVAGRTDAGVHADGQVCHADIPAEAF--THRSLARPED-----LVRRLSRMLPEDIR 144

Query: 61  VLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASREL 120
           +     AP  FDARFSALRRHYVYR+ TAP G  P++ R    W R +D++ + +A+  L
Sbjct: 145 LNAAVAAPEGFDARFSALRRHYVYRVCTAPGGPLPRRVRDTARWRRPVDLEKVQIAADAL 204

Query: 121 LGLHNFAAFCRRREGATTIRDLQRLDWS-----RNGHLVTAQVSADAFCWSMVRSLVGAL 175
           +GL+NFAA+C+ REGATTIR+LQ   W             A V ADAFCWSMVRS+VGA 
Sbjct: 205 VGLNNFAAYCKAREGATTIRELQEFTWKDVSTPAEPQTYEAHVVADAFCWSMVRSIVGAC 264

Query: 176 LAVGEHRRTPDWCRELLTATARSSDFAAAPAHGLVLAKVDYPPDDQLASRVLITRDLR 233
           L VGE +R   +  ELL    RSS    APA GL L  VDYP   +LA+R   TR +R
Sbjct: 265 LTVGEGKRPEGFTAELLELDERSSQVPVAPAEGLNLVGVDYPDASELAARAAETRAVR 322


  Database: Amellifera_nr
    Posted date:  Feb 5, 2010  5:10 AM
  Number of letters in database: 3,846,993,858
  Number of sequences in database:  11,275,203
  
Lambda     K      H
   0.324    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11275203
Number of Hits to DB: 1,679,998,406
Number of extensions: 65270025
Number of successful extensions: 193169
Number of sequences better than 10.0: 2476
Number of HSP's gapped: 188205
Number of HSP's successfully gapped: 2496
Length of query: 237
Length of database: 3,846,993,858
Length adjustment: 133
Effective length of query: 104
Effective length of database: 2,347,391,859
Effective search space: 244128753336
Effective search space used: 244128753336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 78 (34.7 bits)