BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_1134 (197 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HD19|B2HD19_MYCMM Tax_Id=216594 (sigD)RecName: Full=RNA pol... 312 1e-83 tr|A0PMF7|A0PMF7_MYCUA Tax_Id=362242 (sigD)RecName: Full=RNA pol... 312 1e-83 sp|P66811|RPSD_MYCTU Tax_Id=1773 (sigD)RecName: Full=Probable RN... 302 2e-80 sp|P66812|RPSD_MYCBO Tax_Id=1765 (sigD)RecName: Full=Probable RN... 302 2e-80 tr|C6DLT7|C6DLT7_MYCTK Tax_Id=478434 RecName: Full=RNA polymeras... 302 2e-80 tr|C1AHM7|C1AHM7_MYCBT Tax_Id=561275 (sigD)RecName: Full=RNA pol... 302 2e-80 tr|A5U889|A5U889_MYCTA Tax_Id=419947 (sigD)RecName: Full=RNA pol... 302 2e-80 tr|A1KPA5|A1KPA5_MYCBP Tax_Id=410289 (sigD)RecName: Full=RNA pol... 302 2e-80 tr|A5WSY4|A5WSY4_MYCTF Tax_Id=336982 RecName: Full=RNA polymeras... 302 2e-80 tr|A4KLU7|A4KLU7_MYCTU Tax_Id=395095 RecName: Full=RNA polymeras... 302 2e-80 tr|A2VPK1|A2VPK1_MYCTU Tax_Id=348776 RecName: Full=RNA polymeras... 302 2e-80 tr|Q73S03|Q73S03_MYCPA Tax_Id=1770 (sigD)RecName: Full=RNA polym... 277 4e-73 tr|A0QKQ6|A0QKQ6_MYCA1 Tax_Id=243243 RecName: Full=RNA polymeras... 267 4e-70 tr|A1T590|A1T590_MYCVP Tax_Id=350058 SubName: Full=RNA polymeras... 243 1e-62 tr|A4TEQ1|A4TEQ1_MYCGI Tax_Id=350054 SubName: Full=RNA polymeras... 238 3e-61 tr|Q1BCV8|Q1BCV8_MYCSS Tax_Id=164756 SubName: Full=RNA polymeras... 230 6e-59 tr|A3PVR7|A3PVR7_MYCSJ Tax_Id=164757 SubName: Full=RNA polymeras... 230 6e-59 tr|A1UC35|A1UC35_MYCSK Tax_Id=189918 SubName: Full=RNA polymeras... 230 6e-59 tr|A0QSU0|A0QSU0_MYCS2 Tax_Id=246196 SubName: Full=RNA polymeras... 229 1e-58 tr|B1MG53|B1MG53_MYCA9 Tax_Id=561007 SubName: Full=Probable RNA ... 212 2e-53 tr|Q5Z1F4|Q5Z1F4_NOCFA Tax_Id=37329 SubName: Full=Putative sigma... 190 6e-47 tr|C2AR16|C2AR16_TSUPA Tax_Id=521096 SubName: Full=RNA polymeras... 189 1e-46 tr|Q0S3B3|Q0S3B3_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,... 186 9e-46 tr|C1B108|C1B108_RHOOB Tax_Id=632772 (sigD)SubName: Full=RNA pol... 186 9e-46 tr|C0ZWA3|C0ZWA3_RHOE4 Tax_Id=234621 (sigD)SubName: Full=Putativ... 183 8e-45 tr|C3JGV1|C3JGV1_RHOER Tax_Id=596309 SubName: Full=RNA polymeras... 183 8e-45 tr|C6WLV3|C6WLV3_ACTMD Tax_Id=446462 SubName: Full=RNA polymeras... 182 2e-44 tr|C7MU18|C7MU18_SACVD Tax_Id=471857 SubName: Full=RNA polymeras... 179 2e-43 tr|C6WDG3|C6WDG3_ACTMD Tax_Id=446462 SubName: Full=RNA polymeras... 170 9e-41 tr|D0L7X2|D0L7X2_GORB4 Tax_Id=526226 SubName: Full=RNA polymeras... 169 2e-40 tr|A4FPA2|A4FPA2_SACEN Tax_Id=405948 (sigD)SubName: Full=RNA pol... 152 1e-35 tr|C6W8F7|C6W8F7_ACTMD Tax_Id=446462 SubName: Full=RNA polymeras... 152 2e-35 tr|C1YSM5|C1YSM5_NOCDA Tax_Id=446468 SubName: Full=RNA polymeras... 145 2e-33 tr|C6R722|C6R722_9CORY Tax_Id=553206 SubName: Full=RNA polymeras... 141 3e-32 tr|C2BJZ8|C2BJZ8_9CORY Tax_Id=525264 SubName: Full=RNA polymeras... 140 6e-32 tr|Q8NSR8|Q8NSR8_CORGL Tax_Id=1718 (sigD)SubName: Full=DNA-direc... 136 1e-30 tr|Q8FS03|Q8FS03_COREF Tax_Id=152794 SubName: Full=Putative RNA ... 136 1e-30 tr|C2CQ73|C2CQ73_CORST Tax_Id=525268 SubName: Full=RNA polymeras... 135 2e-30 tr|C8NMA1|C8NMA1_COREF Tax_Id=196164 (sigD)SubName: Full=RNA pol... 135 3e-30 tr|C0WIQ4|C0WIQ4_9CORY Tax_Id=525260 SubName: Full=RNA polymeras... 134 5e-30 tr|C3PL71|C3PL71_CORA7 Tax_Id=548476 (sigD)SubName: Full=ECF-fam... 134 7e-30 tr|D1A313|D1A313_THECU Tax_Id=471852 SubName: Full=RNA polymeras... 133 9e-30 tr|Q5YT95|Q5YT95_NOCFA Tax_Id=37329 SubName: Full=Putative sigma... 133 1e-29 tr|C0XUU5|C0XUU5_9CORY Tax_Id=525263 SubName: Full=RNA polymeras... 131 4e-29 tr|C6W898|C6W898_ACTMD Tax_Id=446462 SubName: Full=RNA polymeras... 131 5e-29 tr|C8XCQ2|C8XCQ2_NAKMY Tax_Id=479431 SubName: Full=Transcription... 130 1e-28 tr|A6W5Z0|A6W5Z0_KINRD Tax_Id=266940 SubName: Full=RNA polymeras... 129 1e-28 tr|C4E5T7|C4E5T7_STRRS Tax_Id=479432 SubName: Full=RNA polymeras... 129 2e-28 tr|C4LGZ5|C4LGZ5_CORK4 Tax_Id=645127 (sigD)SubName: Full=ECF-fam... 128 3e-28 tr|C0E0N5|C0E0N5_9CORY Tax_Id=566549 SubName: Full=Putative unch... 127 5e-28 >tr|B2HD19|B2HD19_MYCMM Tax_Id=216594 (sigD)RecName: Full=RNA polymerase sigma factor;[Mycobacterium marinum] Length = 197 Score = 312 bits (799), Expect = 1e-83 Identities = 168/197 (85%), Positives = 169/197 (85%) Query: 1 LEISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 60 +EISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD Sbjct: 1 MEISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 60 Query: 61 VAQEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSAD 120 VAQEVCLATITALPRYRDRGRPFLAFLYGI GRDLAYPAESVPERRSAD Sbjct: 61 VAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPAESVPERRSAD 120 Query: 121 AGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQH 180 AGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGL RVAQH Sbjct: 121 AGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQH 180 Query: 181 RALQRLKDEIVAAGDYA 197 RALQRLKDEIVAAGDYA Sbjct: 181 RALQRLKDEIVAAGDYA 197 >tr|A0PMF7|A0PMF7_MYCUA Tax_Id=362242 (sigD)RecName: Full=RNA polymerase sigma factor;[Mycobacterium ulcerans] Length = 197 Score = 312 bits (799), Expect = 1e-83 Identities = 168/197 (85%), Positives = 169/197 (85%) Query: 1 LEISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 60 +EISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD Sbjct: 1 MEISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 60 Query: 61 VAQEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSAD 120 VAQEVCLATITALPRYRDRGRPFLAFLYGI GRDLAYPAESVPERRSAD Sbjct: 61 VAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPAESVPERRSAD 120 Query: 121 AGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQH 180 AGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGL RVAQH Sbjct: 121 AGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQH 180 Query: 181 RALQRLKDEIVAAGDYA 197 RALQRLKDEIVAAGDYA Sbjct: 181 RALQRLKDEIVAAGDYA 197 >sp|P66811|RPSD_MYCTU Tax_Id=1773 (sigD)RecName: Full=Probable RNA polymerase sigma-D factor;[Mycobacterium tuberculosis] Length = 212 Score = 302 bits (773), Expect = 2e-80 Identities = 162/197 (82%), Positives = 167/197 (84%) Query: 1 LEISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 60 LEISPSMT++GERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD Sbjct: 16 LEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 75 Query: 61 VAQEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSAD 120 VAQEVCLATITALPRYRDRGRPFLAFLYGI GRD AYPAE++PER SAD Sbjct: 76 VAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSAD 135 Query: 121 AGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQH 180 AGPEQ+AIEADSVTRMNELLEILPAKQREILILRVVVGL RVAQH Sbjct: 136 AGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQH 195 Query: 181 RALQRLKDEIVAAGDYA 197 RALQRLKDEIVAAGDYA Sbjct: 196 RALQRLKDEIVAAGDYA 212 >sp|P66812|RPSD_MYCBO Tax_Id=1765 (sigD)RecName: Full=Probable RNA polymerase sigma-D factor;[Mycobacterium bovis] Length = 212 Score = 302 bits (773), Expect = 2e-80 Identities = 162/197 (82%), Positives = 167/197 (84%) Query: 1 LEISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 60 LEISPSMT++GERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD Sbjct: 16 LEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 75 Query: 61 VAQEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSAD 120 VAQEVCLATITALPRYRDRGRPFLAFLYGI GRD AYPAE++PER SAD Sbjct: 76 VAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSAD 135 Query: 121 AGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQH 180 AGPEQ+AIEADSVTRMNELLEILPAKQREILILRVVVGL RVAQH Sbjct: 136 AGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQH 195 Query: 181 RALQRLKDEIVAAGDYA 197 RALQRLKDEIVAAGDYA Sbjct: 196 RALQRLKDEIVAAGDYA 212 >tr|C6DLT7|C6DLT7_MYCTK Tax_Id=478434 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 212 Score = 302 bits (773), Expect = 2e-80 Identities = 162/197 (82%), Positives = 167/197 (84%) Query: 1 LEISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 60 LEISPSMT++GERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD Sbjct: 16 LEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 75 Query: 61 VAQEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSAD 120 VAQEVCLATITALPRYRDRGRPFLAFLYGI GRD AYPAE++PER SAD Sbjct: 76 VAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSAD 135 Query: 121 AGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQH 180 AGPEQ+AIEADSVTRMNELLEILPAKQREILILRVVVGL RVAQH Sbjct: 136 AGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQH 195 Query: 181 RALQRLKDEIVAAGDYA 197 RALQRLKDEIVAAGDYA Sbjct: 196 RALQRLKDEIVAAGDYA 212 >tr|C1AHM7|C1AHM7_MYCBT Tax_Id=561275 (sigD)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 212 Score = 302 bits (773), Expect = 2e-80 Identities = 162/197 (82%), Positives = 167/197 (84%) Query: 1 LEISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 60 LEISPSMT++GERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD Sbjct: 16 LEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 75 Query: 61 VAQEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSAD 120 VAQEVCLATITALPRYRDRGRPFLAFLYGI GRD AYPAE++PER SAD Sbjct: 76 VAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSAD 135 Query: 121 AGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQH 180 AGPEQ+AIEADSVTRMNELLEILPAKQREILILRVVVGL RVAQH Sbjct: 136 AGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQH 195 Query: 181 RALQRLKDEIVAAGDYA 197 RALQRLKDEIVAAGDYA Sbjct: 196 RALQRLKDEIVAAGDYA 212 >tr|A5U889|A5U889_MYCTA Tax_Id=419947 (sigD)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 212 Score = 302 bits (773), Expect = 2e-80 Identities = 162/197 (82%), Positives = 167/197 (84%) Query: 1 LEISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 60 LEISPSMT++GERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD Sbjct: 16 LEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 75 Query: 61 VAQEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSAD 120 VAQEVCLATITALPRYRDRGRPFLAFLYGI GRD AYPAE++PER SAD Sbjct: 76 VAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSAD 135 Query: 121 AGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQH 180 AGPEQ+AIEADSVTRMNELLEILPAKQREILILRVVVGL RVAQH Sbjct: 136 AGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQH 195 Query: 181 RALQRLKDEIVAAGDYA 197 RALQRLKDEIVAAGDYA Sbjct: 196 RALQRLKDEIVAAGDYA 212 >tr|A1KPA5|A1KPA5_MYCBP Tax_Id=410289 (sigD)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 212 Score = 302 bits (773), Expect = 2e-80 Identities = 162/197 (82%), Positives = 167/197 (84%) Query: 1 LEISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 60 LEISPSMT++GERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD Sbjct: 16 LEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 75 Query: 61 VAQEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSAD 120 VAQEVCLATITALPRYRDRGRPFLAFLYGI GRD AYPAE++PER SAD Sbjct: 76 VAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSAD 135 Query: 121 AGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQH 180 AGPEQ+AIEADSVTRMNELLEILPAKQREILILRVVVGL RVAQH Sbjct: 136 AGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQH 195 Query: 181 RALQRLKDEIVAAGDYA 197 RALQRLKDEIVAAGDYA Sbjct: 196 RALQRLKDEIVAAGDYA 212 >tr|A5WSY4|A5WSY4_MYCTF Tax_Id=336982 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 212 Score = 302 bits (773), Expect = 2e-80 Identities = 162/197 (82%), Positives = 167/197 (84%) Query: 1 LEISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 60 LEISPSMT++GERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD Sbjct: 16 LEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 75 Query: 61 VAQEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSAD 120 VAQEVCLATITALPRYRDRGRPFLAFLYGI GRD AYPAE++PER SAD Sbjct: 76 VAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSAD 135 Query: 121 AGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQH 180 AGPEQ+AIEADSVTRMNELLEILPAKQREILILRVVVGL RVAQH Sbjct: 136 AGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQH 195 Query: 181 RALQRLKDEIVAAGDYA 197 RALQRLKDEIVAAGDYA Sbjct: 196 RALQRLKDEIVAAGDYA 212 >tr|A4KLU7|A4KLU7_MYCTU Tax_Id=395095 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis str. Haarlem] Length = 212 Score = 302 bits (773), Expect = 2e-80 Identities = 162/197 (82%), Positives = 167/197 (84%) Query: 1 LEISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 60 LEISPSMT++GERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD Sbjct: 16 LEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 75 Query: 61 VAQEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSAD 120 VAQEVCLATITALPRYRDRGRPFLAFLYGI GRD AYPAE++PER SAD Sbjct: 76 VAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSAD 135 Query: 121 AGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQH 180 AGPEQ+AIEADSVTRMNELLEILPAKQREILILRVVVGL RVAQH Sbjct: 136 AGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQH 195 Query: 181 RALQRLKDEIVAAGDYA 197 RALQRLKDEIVAAGDYA Sbjct: 196 RALQRLKDEIVAAGDYA 212 >tr|A2VPK1|A2VPK1_MYCTU Tax_Id=348776 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis C] Length = 212 Score = 302 bits (773), Expect = 2e-80 Identities = 162/197 (82%), Positives = 167/197 (84%) Query: 1 LEISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 60 LEISPSMT++GERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD Sbjct: 16 LEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADD 75 Query: 61 VAQEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSAD 120 VAQEVCLATITALPRYRDRGRPFLAFLYGI GRD AYPAE++PER SAD Sbjct: 76 VAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSAD 135 Query: 121 AGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQH 180 AGPEQ+AIEADSVTRMNELLEILPAKQREILILRVVVGL RVAQH Sbjct: 136 AGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQH 195 Query: 181 RALQRLKDEIVAAGDYA 197 RALQRLKDEIVAAGDYA Sbjct: 196 RALQRLKDEIVAAGDYA 212 >tr|Q73S03|Q73S03_MYCPA Tax_Id=1770 (sigD)RecName: Full=RNA polymerase sigma factor;[Mycobacterium paratuberculosis] Length = 198 Score = 277 bits (709), Expect = 4e-73 Identities = 151/198 (76%), Positives = 159/198 (80%), Gaps = 1/198 (0%) Query: 1 LEISPSMTIE-GERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSAD 59 +EISPSMTI GERLDAVVA+AV GD NALREVLETIRPIVVRYCRARVGTVER GLSAD Sbjct: 1 MEISPSMTIPAGERLDAVVAKAVTGDHNALREVLETIRPIVVRYCRARVGTVERGGLSAD 60 Query: 60 DVAQEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSA 119 DVAQEVCLATITALPRYRDRGRPFLAFLYGI GRDLAYP ES+P+R S Sbjct: 61 DVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPTESIPDRWSN 120 Query: 120 DAGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQ 179 DAGPEQLAIEADSV+RM+ELLEILPAKQREILILRVVVGL RVAQ Sbjct: 121 DAGPEQLAIEADSVSRMSELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQ 180 Query: 180 HRALQRLKDEIVAAGDYA 197 HRAL RLK E++AAGD A Sbjct: 181 HRALSRLKSEMIAAGDCA 198 >tr|A0QKQ6|A0QKQ6_MYCA1 Tax_Id=243243 RecName: Full=RNA polymerase sigma factor;[Mycobacterium avium] Length = 192 Score = 267 bits (683), Expect = 4e-70 Identities = 146/192 (76%), Positives = 153/192 (79%), Gaps = 1/192 (0%) Query: 7 MTIE-GERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEV 65 MTI GERLDAVVA+AV GD NALREVLETIRPIVVRYCRARVGTVER GLSADDVAQEV Sbjct: 1 MTIPAGERLDAVVAKAVTGDHNALREVLETIRPIVVRYCRARVGTVERGGLSADDVAQEV 60 Query: 66 CLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQ 125 CLATITALPRYRDRGRPFLAFLYGI GRDLAYP ES+P+R S DAGPEQ Sbjct: 61 CLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPTESIPDRWSNDAGPEQ 120 Query: 126 LAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQR 185 LAIEADSV+RM+ELLEILPAKQREILILRVVVGL RVAQHRAL R Sbjct: 121 LAIEADSVSRMSELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALSR 180 Query: 186 LKDEIVAAGDYA 197 LK E++AAGD A Sbjct: 181 LKSEMIAAGDCA 192 >tr|A1T590|A1T590_MYCVP Tax_Id=350058 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium vanbaalenii] Length = 192 Score = 243 bits (619), Expect = 1e-62 Identities = 131/188 (69%), Positives = 145/188 (77%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 MTI GERLDAVVAEAVAGDR+ALREVLETIRP+VVRYCRARVGT ERSGLSADDVAQEVC Sbjct: 1 MTISGERLDAVVAEAVAGDRDALREVLETIRPLVVRYCRARVGTAERSGLSADDVAQEVC 60 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 LA ITALPRY+D+GRPFLAF+YGI GR+ A P + VPER S +AGPEQL Sbjct: 61 LAAITALPRYKDQGRPFLAFVYGIAAHKVADAHRAAGRNKADPMDVVPERFSGEAGPEQL 120 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 AI+++S RM ELL+ILP KQREILILRVVVG+ RVAQHRAL RL Sbjct: 121 AIDSESSARMAELLQILPEKQREILILRVVVGMSAEETADAVGSTAGAVRVAQHRALTRL 180 Query: 187 KDEIVAAG 194 K EI+AAG Sbjct: 181 KTEIMAAG 188 >tr|A4TEQ1|A4TEQ1_MYCGI Tax_Id=350054 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium gilvum] Length = 194 Score = 238 bits (607), Expect = 3e-61 Identities = 130/194 (67%), Positives = 144/194 (74%), Gaps = 3/194 (1%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 MTI GERLDAVVAEAVAGDR ALREVLETIRP+VVRYCRARVGT ERSGLSADDVAQEVC Sbjct: 1 MTISGERLDAVVAEAVAGDRGALREVLETIRPLVVRYCRARVGTAERSGLSADDVAQEVC 60 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 LA ITALPRYRD+GRPFLAF+YGI GR+ A P + VPER S +AGPEQ+ Sbjct: 61 LAAITALPRYRDQGRPFLAFVYGIAAHKVADAHRAAGRNRADPMDVVPERLSGEAGPEQM 120 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 AI+++S RM LL++LP KQREILILRVVVG+ RVAQHRAL RL Sbjct: 121 AIDSESSARMATLLKVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALSRL 180 Query: 187 KDEIVAAG---DYA 197 K EI + G DYA Sbjct: 181 KAEITSTGQGRDYA 194 >tr|Q1BCV8|Q1BCV8_MYCSS Tax_Id=164756 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 192 Score = 230 bits (587), Expect = 6e-59 Identities = 123/188 (65%), Positives = 140/188 (74%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 MT+ G+RLDAVVAEAVAG+R+ALREVLETIRPIVVRYCRAR+G ERSGLSADDVAQEVC Sbjct: 1 MTLSGDRLDAVVAEAVAGNRDALREVLETIRPIVVRYCRARIGATERSGLSADDVAQEVC 60 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 LA ITALPRY+D+GRPFLAF+YGI R+ + P + VPER S +AGPEQL Sbjct: 61 LAAITALPRYKDQGRPFLAFVYGIAAHKIADAHRSASRNKSDPTDVVPERFSGEAGPEQL 120 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 AI A+S RM +LL +LP KQREILILRVVVG+ RVAQHRAL RL Sbjct: 121 AINAESSARMEKLLGVLPDKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 Query: 187 KDEIVAAG 194 K EI+A G Sbjct: 181 KAEIIATG 188 >tr|A3PVR7|A3PVR7_MYCSJ Tax_Id=164757 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 192 Score = 230 bits (587), Expect = 6e-59 Identities = 123/188 (65%), Positives = 140/188 (74%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 MT+ G+RLDAVVAEAVAG+R+ALREVLETIRPIVVRYCRAR+G ERSGLSADDVAQEVC Sbjct: 1 MTLSGDRLDAVVAEAVAGNRDALREVLETIRPIVVRYCRARIGATERSGLSADDVAQEVC 60 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 LA ITALPRY+D+GRPFLAF+YGI R+ + P + VPER S +AGPEQL Sbjct: 61 LAAITALPRYKDQGRPFLAFVYGIAAHKIADAHRAASRNKSDPTDVVPERFSGEAGPEQL 120 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 AI A+S RM +LL +LP KQREILILRVVVG+ RVAQHRAL RL Sbjct: 121 AINAESSARMEKLLGVLPDKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 Query: 187 KDEIVAAG 194 K EI+A G Sbjct: 181 KAEIIATG 188 >tr|A1UC35|A1UC35_MYCSK Tax_Id=189918 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 192 Score = 230 bits (587), Expect = 6e-59 Identities = 123/188 (65%), Positives = 140/188 (74%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 MT+ G+RLDAVVAEAVAG+R+ALREVLETIRPIVVRYCRAR+G ERSGLSADDVAQEVC Sbjct: 1 MTLSGDRLDAVVAEAVAGNRDALREVLETIRPIVVRYCRARIGATERSGLSADDVAQEVC 60 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 LA ITALPRY+D+GRPFLAF+YGI R+ + P + VPER S +AGPEQL Sbjct: 61 LAAITALPRYKDQGRPFLAFVYGIAAHKIADAHRSASRNKSDPTDVVPERFSGEAGPEQL 120 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 AI A+S RM +LL +LP KQREILILRVVVG+ RVAQHRAL RL Sbjct: 121 AINAESSARMEKLLGVLPDKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 Query: 187 KDEIVAAG 194 K EI+A G Sbjct: 181 KAEIIATG 188 >tr|A0QSU0|A0QSU0_MYCS2 Tax_Id=246196 SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium smegmatis] Length = 192 Score = 229 bits (584), Expect = 1e-58 Identities = 123/188 (65%), Positives = 138/188 (73%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 MT G+RLDAVVAEAVAGDR+ALREVLE IRPI+VRYCRAR+G ERSGLSADDVAQEVC Sbjct: 1 MTSSGDRLDAVVAEAVAGDRDALREVLEIIRPIIVRYCRARIGATERSGLSADDVAQEVC 60 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 LA ITALPRYRD+GRPFLAF+YGI R+ A P + VPER S DAGPEQ Sbjct: 61 LAAITALPRYRDQGRPFLAFVYGIAAHKVADAHRAAARNRAEPTDVVPERFSLDAGPEQS 120 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 AI+++S RM +LL +LP KQREILILRVVVG+ RVAQHRAL RL Sbjct: 121 AIDSESSARMAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALARL 180 Query: 187 KDEIVAAG 194 K EI+A G Sbjct: 181 KTEIMATG 188 >tr|B1MG53|B1MG53_MYCA9 Tax_Id=561007 SubName: Full=Probable RNA polymerase sigma-D factor;[Mycobacterium abscessus] Length = 192 Score = 212 bits (540), Expect = 2e-53 Identities = 116/190 (61%), Positives = 131/190 (68%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 MT LD VVA AV GDR+AL EVL IRP+VVRYCRARVGT ERSGLSADDVAQEVC Sbjct: 1 MTSTESGLDDVVAAAVRGDRDALSEVLSAIRPVVVRYCRARVGTAERSGLSADDVAQEVC 60 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 LA I ALPRY+D+GRPFLAF+YGI RD + PAE++PE+ AGPEQ Sbjct: 61 LAVIAALPRYQDQGRPFLAFVYGIAAHKVADAHRAMARDKSDPAENLPEQVDRHAGPEQE 120 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 A+ ++S RM LLE+LP KQREILILRVVVGL RVAQHRALQ+L Sbjct: 121 ALNSESSRRMQALLEVLPEKQREILILRVVVGLSAEETADAVGSSAGAVRVAQHRALQKL 180 Query: 187 KDEIVAAGDY 196 K E+ AGDY Sbjct: 181 KAEMTRAGDY 190 >tr|Q5Z1F4|Q5Z1F4_NOCFA Tax_Id=37329 SubName: Full=Putative sigma factor;[Nocardia farcinica] Length = 203 Score = 190 bits (483), Expect = 6e-47 Identities = 101/193 (52%), Positives = 125/193 (64%) Query: 3 ISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVA 62 IS +MT GE LD VA A GDR AL +VLE +RP+VVRYCRAR+G ER LSADDVA Sbjct: 8 ISLTMTHTGEELDLAVAAAAQGDRTALAQVLELVRPLVVRYCRARIGAAERGQLSADDVA 67 Query: 63 QEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAG 122 QEVCLA +TALPRY+D+GRPF+AF+YGI R+ A VP+ S D G Sbjct: 68 QEVCLAVMTALPRYQDQGRPFMAFVYGIASHKVADAHRNAARNKAEAMAEVPDVISTDQG 127 Query: 123 PEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRA 182 PEQ A+E+++ +MN LL LP K REIL+LR+V+GL RVAQHRA Sbjct: 128 PEQRALESETSRQMNRLLATLPEKHREILVLRLVMGLSAEETAAAVGSTAGAIRVAQHRA 187 Query: 183 LQRLKDEIVAAGD 195 L +LK ++ AG+ Sbjct: 188 LAKLKSQVARAGE 200 >tr|C2AR16|C2AR16_TSUPA Tax_Id=521096 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Tsukamurella paurometabola DSM 20162] Length = 190 Score = 189 bits (481), Expect = 1e-46 Identities = 100/189 (52%), Positives = 125/189 (66%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 M + GE LD V EA GDR+AL +VL++IRP+VVRYCRARVG ER LSA+D+AQEVC Sbjct: 1 MILTGEELDRAVREAARGDRSALADVLDSIRPLVVRYCRARVGGGERHSLSAEDIAQEVC 60 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 +A + ALPRY D+GRPF+AF+YGI R+ + P +PER S D+GPE Sbjct: 61 MAVMMALPRYEDQGRPFMAFVYGIAAHKVADGFRAATRNKSDPVSEMPERASLDSGPEVT 120 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 A+E+++ RMN LL LP KQREILILRVVVGL RVAQHRAL +L Sbjct: 121 ALESEANRRMNRLLGTLPEKQREILILRVVVGLSAEETAEAVGGTAGAVRVAQHRALAKL 180 Query: 187 KDEIVAAGD 195 K++I G+ Sbjct: 181 KNQIAKEGE 189 >tr|Q0S3B3|Q0S3B3_RHOSR Tax_Id=101510 SubName: Full=Sigma factor, sigma 70 type, group 4 (ECF);[Rhodococcus sp.] Length = 192 Score = 186 bits (473), Expect = 9e-46 Identities = 100/189 (52%), Positives = 122/189 (64%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 MT E LD+ VA A GDR AL VLE IRP+VVRYCRARVG ER LSADDVAQEVC Sbjct: 1 MTNTSEELDSAVAAATQGDRAALALVLENIRPLVVRYCRARVGAAERGQLSADDVAQEVC 60 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 LA +TALPRY D+GRPF+AF+YGI R+ + P VP+ + D GPEQ Sbjct: 61 LAVMTALPRYEDQGRPFMAFVYGIAAHKVADAHRNSARNKSEPVAEVPDVVANDDGPEQR 120 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 A+++++ +MNELL LP K REILILR+VVG+ RVAQHRA+ +L Sbjct: 121 ALDSEASRQMNELLSTLPEKHREILILRLVVGMSAEETAAAVGSTAGAVRVAQHRAIAKL 180 Query: 187 KDEIVAAGD 195 K E+ AG+ Sbjct: 181 KKEVTRAGE 189 >tr|C1B108|C1B108_RHOOB Tax_Id=632772 (sigD)SubName: Full=RNA polymerase ECF-type sigma factor SigD;[Rhodococcus opacus] Length = 192 Score = 186 bits (473), Expect = 9e-46 Identities = 100/189 (52%), Positives = 122/189 (64%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 MT E LD+ VA A GDR AL VLE IRP+VVRYCRARVG ER LSADDVAQEVC Sbjct: 1 MTNTSEELDSAVAAATQGDRAALALVLENIRPLVVRYCRARVGAAERGQLSADDVAQEVC 60 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 LA +TALPRY D+GRPF+AF+YGI R+ + P VP+ + D GPEQ Sbjct: 61 LAVMTALPRYEDQGRPFMAFVYGIAAHKVADAHRNSARNKSEPVAEVPDVVANDDGPEQR 120 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 A+++++ +MNELL LP K REILILR+VVG+ RVAQHRA+ +L Sbjct: 121 ALDSEASRQMNELLSTLPEKHREILILRLVVGMSAEETAAAVGSTAGAVRVAQHRAIAKL 180 Query: 187 KDEIVAAGD 195 K E+ AG+ Sbjct: 181 KKEVTRAGE 189 >tr|C0ZWA3|C0ZWA3_RHOE4 Tax_Id=234621 (sigD)SubName: Full=Putative RNA polymerase ECF-type sigma factor SigD;[Rhodococcus erythropolis] Length = 192 Score = 183 bits (465), Expect = 8e-45 Identities = 98/189 (51%), Positives = 121/189 (64%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 MT + LD VA A GDR AL VLE IRP+VVRYCR RVG ER LSADDVAQEVC Sbjct: 1 MTNTSDELDTAVAAAAQGDRTALALVLENIRPMVVRYCRGRVGAAERGHLSADDVAQEVC 60 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 LA +TALPRY+D+GRPF+AF+YGI R+ + P VP+ + D GPEQ Sbjct: 61 LAVMTALPRYQDQGRPFMAFVYGIAAHKVADAHRSSARNKSEPVSEVPDVIALDDGPEQR 120 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 A++++S +M+ELL LP K REILILR+VVG+ RVAQHRA+ +L Sbjct: 121 ALDSESSRQMHELLGTLPEKHREILILRLVVGMSAEETAVAVGSTAGAVRVAQHRAIAKL 180 Query: 187 KDEIVAAGD 195 K E+ AG+ Sbjct: 181 KKEVTKAGE 189 >tr|C3JGV1|C3JGV1_RHOER Tax_Id=596309 SubName: Full=RNA polymerase sigma factor SigD;[Rhodococcus erythropolis SK121] Length = 192 Score = 183 bits (465), Expect = 8e-45 Identities = 98/189 (51%), Positives = 121/189 (64%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 MT + LD VA A GDR AL VLE IRP+VVRYCR RVG ER LSADDVAQEVC Sbjct: 1 MTNTSDELDTAVAAAAQGDRTALALVLENIRPMVVRYCRGRVGAAERGHLSADDVAQEVC 60 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 LA +TALPRY+D+GRPF+AF+YGI R+ + P VP+ + D GPEQ Sbjct: 61 LAVMTALPRYQDQGRPFMAFVYGIAAHKVADAHRSSARNKSEPVSEVPDVIALDDGPEQR 120 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 A++++S +M+ELL LP K REILILR+VVG+ RVAQHRA+ +L Sbjct: 121 ALDSESSRQMHELLGTLPEKHREILILRLVVGMSAEETAVAVGSTAGAVRVAQHRAIAKL 180 Query: 187 KDEIVAAGD 195 K E+ AG+ Sbjct: 181 KKEVTKAGE 189 >tr|C6WLV3|C6WLV3_ACTMD Tax_Id=446462 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Actinosynnema mirum] Length = 190 Score = 182 bits (461), Expect = 2e-44 Identities = 100/186 (53%), Positives = 121/186 (65%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 MT G+ LDA V AV GDR+A+ +L +IRP+VVRYCRARVG ERS SADDVAQEVC Sbjct: 1 MTNLGDGLDAEVGAAVDGDRHAIERLLASIRPLVVRYCRARVGRQERSFASADDVAQEVC 60 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 LA +TALP YRD+GRPFLAF+YGI R+ + P VP+ +AGPEQ Sbjct: 61 LAVLTALPSYRDQGRPFLAFVYGIAAHKVADAHRSAARNRSEPVPEVPDAPETEAGPEQR 120 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 A++ + RM +LL+ILP KQREIL+LRVVVGL RVAQHRAL RL Sbjct: 121 AMQGELSGRMAQLLKILPEKQREILLLRVVVGLSAEETATAVGSTPGAVRVAQHRALARL 180 Query: 187 KDEIVA 192 + + A Sbjct: 181 RKALAA 186 >tr|C7MU18|C7MU18_SACVD Tax_Id=471857 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Saccharomonospora viridis] Length = 190 Score = 179 bits (453), Expect = 2e-43 Identities = 97/186 (52%), Positives = 117/186 (62%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 MT G+ LD VA AV GD A+ +L IRP+VVRYCRARVG ERS SADDVAQEVC Sbjct: 1 MTNVGDGLDESVAAAVEGDPQAVERLLAAIRPLVVRYCRARVGRQERSFTSADDVAQEVC 60 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 LA +TALP YRD+GRPFLAF+YGI R+ A P +P+ D GPEQ Sbjct: 61 LAVLTALPSYRDQGRPFLAFVYGIAQHKVADAHRAASRNRAEPVADIPDEIEGDIGPEQR 120 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 A+ + RM++LL++LP KQREI++LRVVVGL RVAQHRAL RL Sbjct: 121 ALRGELNERMSQLLQVLPEKQREIVVLRVVVGLSAEETAEAVGSTPGAVRVAQHRALARL 180 Query: 187 KDEIVA 192 + + A Sbjct: 181 RKALAA 186 >tr|C6WDG3|C6WDG3_ACTMD Tax_Id=446462 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Actinosynnema mirum] Length = 197 Score = 170 bits (430), Expect = 9e-41 Identities = 92/185 (49%), Positives = 116/185 (62%) Query: 3 ISPSMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVA 62 ++ ++ ++G V A AGDR A+RE+L +RP+VVRYCRARVG ER+ SADDVA Sbjct: 4 VTGALGVDGRFDPEQVRAAAAGDRAAVRELLAVVRPVVVRYCRARVGRQERTFASADDVA 63 Query: 63 QEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAG 122 QEVCLA +TALP YRD+GRPFLAF+YGI R+ A P +P+ S +AG Sbjct: 64 QEVCLAVLTALPSYRDQGRPFLAFVYGIAAHKVADAHRAAARNRAEPVPELPDSVSTEAG 123 Query: 123 PEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRA 182 PE A+ + RM LL +LP KQREIL+LRVVVGL RVAQHRA Sbjct: 124 PETRALHGELSDRMARLLRVLPDKQREILVLRVVVGLSAEETAQAVGSTPGAVRVAQHRA 183 Query: 183 LQRLK 187 L +L+ Sbjct: 184 LAKLQ 188 >tr|D0L7X2|D0L7X2_GORB4 Tax_Id=526226 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Gordonia bronchialis] Length = 195 Score = 169 bits (428), Expect = 2e-40 Identities = 90/188 (47%), Positives = 117/188 (62%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 M + G LD V A GDR AL VLE+++ ++RYCR R+G ER SADD+AQE Sbjct: 1 MKLTGGELDDAVRAARQGDRAALTSVLESVQDPILRYCRGRIGAGERHLFSADDIAQEAL 60 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 +A +TALPRY+D+G+PF+AF+YGI GR A P + VPE + GPEQL Sbjct: 61 MAVMTALPRYQDQGKPFMAFVYGIAAHKVADALRVAGRVKADPTDDVPEVTTLAGGPEQL 120 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 A++AD+ RM LLEILP KQRE+L+LR+VVG+ RVAQHRAL +L Sbjct: 121 ALDADASRRMRALLEILPEKQREVLVLRLVVGMSAEETADAVGSTPGAVRVAQHRALAKL 180 Query: 187 KDEIVAAG 194 K+E+ G Sbjct: 181 KNELKRTG 188 >tr|A4FPA2|A4FPA2_SACEN Tax_Id=405948 (sigD)SubName: Full=RNA polymerase sigma factor;[Saccharopolyspora erythraea] Length = 158 Score = 152 bits (385), Expect = 1e-35 Identities = 83/154 (53%), Positives = 100/154 (64%) Query: 39 IVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXX 98 +VVRYCRARVG ERS SADDVAQEVCLA +TALP YRD+GRPFLAF+YGI Sbjct: 1 MVVRYCRARVGRNERSFASADDVAQEVCLAVLTALPSYRDQGRPFLAFVYGIAAHKVADA 60 Query: 99 XXXXGRDLAYPAESVPERRSADAGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVG 158 R+ + P VP+ ++AGPEQ A++ + RM +LL +LPAKQREIL+LRVVVG Sbjct: 61 HRASARNRSEPVADVPDTPESEAGPEQRAMQGELSGRMAQLLRVLPAKQREILLLRVVVG 120 Query: 159 LXXXXXXXXXXXXXXXXRVAQHRALQRLKDEIVA 192 L RVAQHRAL RL+ + A Sbjct: 121 LSAEETAEAVGSTPGAVRVAQHRALARLRKTLSA 154 >tr|C6W8F7|C6W8F7_ACTMD Tax_Id=446462 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Actinosynnema mirum] Length = 216 Score = 152 bits (384), Expect = 2e-35 Identities = 82/170 (48%), Positives = 106/170 (62%), Gaps = 3/170 (1%) Query: 18 VAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYR 77 V AVAGDR A+ +L +RP++V+YCRARVG + ADDVAQEVCLA + ALP Y+ Sbjct: 38 VTAAVAGDRAAVERLLGVLRPLIVKYCRARVGGAYAT---ADDVAQEVCLAVLKALPNYQ 94 Query: 78 DRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQLAIEADSVTRMN 137 D+GRPFLAF+YGI R+ A P +P++ + AGPE A++ + +M Sbjct: 95 DQGRPFLAFVYGIAAHKVADVHRFAARNRAEPVAELPDKPESSAGPEARALQGEVSEQMA 154 Query: 138 ELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRLK 187 ELL +LP KQREIL+LRVVVG+ RVAQHRAL RL+ Sbjct: 155 ELLRVLPEKQREILLLRVVVGMSAEETAHAVRSTPGAVRVAQHRALARLR 204 >tr|C1YSM5|C1YSM5_NOCDA Tax_Id=446468 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 212 Score = 145 bits (367), Expect = 2e-33 Identities = 83/199 (41%), Positives = 114/199 (57%), Gaps = 9/199 (4%) Query: 3 ISPSMTI-----EGER----LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVER 53 I PS+T+ G+R L+ + + AV GD A+ +L +RP+VVRYCRAR+ V Sbjct: 9 IIPSVTVTDAGARGQRDHTGLNHLGSLAVRGDDGAMDSLLREVRPMVVRYCRARLARVSG 68 Query: 54 SGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESV 113 +DDVAQEVC+A ++A+PRY+DRGRPF AF++GI GR P +SV Sbjct: 69 LAHYSDDVAQEVCIALLSAIPRYQDRGRPFAAFVFGIAAHKVADTLRGAGRVETVPTDSV 128 Query: 114 PERRSADAGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXX 173 PER GPE+ A+ R ELL+ LP +QR++L++RV+ GL Sbjct: 129 PERPDEGPGPEESAVRVIEAQRARELLDELPEQQRKLLVMRVIAGLTADETGHVLGMSAG 188 Query: 174 XXRVAQHRALQRLKDEIVA 192 RVAQHRA+ RL+ VA Sbjct: 189 AVRVAQHRAIARLRQVAVA 207 >tr|C6R722|C6R722_9CORY Tax_Id=553206 SubName: Full=RNA polymerase sigma factor SigD;[Corynebacterium tuberculostearicum SK141] Length = 190 Score = 141 bits (356), Expect = 3e-32 Identities = 81/191 (42%), Positives = 111/191 (58%), Gaps = 2/191 (1%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 M+ + + L +V AV G R AL+EVL I P V+RYCRAR+G + +A+DVAQE+C Sbjct: 1 MSDKEQELADLVPHAVDGSRRALQEVLRIIHPQVLRYCRARIGGGRQP--TAEDVAQEIC 58 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 LA T++ Y D+GRPF+A++YGI GRD + P E +PE + +A PE+ Sbjct: 59 LAVATSIGSYEDKGRPFMAYVYGIAFNKVTDAHRAMGRDKSTPTEEIPEDSAHEATPEEW 118 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 A+EAD RM LL+ L K + I+ILRV GL RVAQHRAL +L Sbjct: 119 ALEADGSNRMRALLDTLSDKAKNIVILRVFNGLSAEETAEIVGSTPGAVRVAQHRALAQL 178 Query: 187 KDEIVAAGDYA 197 + + AA + A Sbjct: 179 RKTLQAAQETA 189 >tr|C2BJZ8|C2BJZ8_9CORY Tax_Id=525264 SubName: Full=RNA polymerase sigma factor SigD;[Corynebacterium pseudogenitalium ATCC 33035] Length = 196 Score = 140 bits (354), Expect = 6e-32 Identities = 80/186 (43%), Positives = 108/186 (58%), Gaps = 2/186 (1%) Query: 12 ERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATIT 71 + L +V AV G R AL+EVL I P V+RYCRAR+G + +A+DVAQE+CLA T Sbjct: 12 QELADLVPHAVDGSRRALQEVLRIIHPQVLRYCRARIGGGRQP--TAEDVAQEICLAVAT 69 Query: 72 ALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQLAIEAD 131 ++ Y D+GRPF+A++YGI GRD + P E +PE + +A PE+ A+EAD Sbjct: 70 SIGSYEDKGRPFMAYVYGIAFNKVTDAHRAMGRDKSTPTEEIPEDSANEATPEEWALEAD 129 Query: 132 SVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRLKDEIV 191 RM LL+ L K + I+ILRV GL RVAQHRAL +L+ + Sbjct: 130 GSNRMRALLDTLSDKAKNIVILRVFNGLSAEETAEIVGSTPGAVRVAQHRALAQLRKTLQ 189 Query: 192 AAGDYA 197 AA + A Sbjct: 190 AAQETA 195 >tr|Q8NSR8|Q8NSR8_CORGL Tax_Id=1718 (sigD)SubName: Full=DNA-directed RNA polymerase specialized sigma subunits, sigma24 homologs; SubName: Full=PUTATIVE RNA POLYMERASE SIGMA FACTOR, ECF family;[Corynebacterium glutamicum] Length = 188 Score = 136 bits (343), Expect = 1e-30 Identities = 75/174 (43%), Positives = 102/174 (58%), Gaps = 2/174 (1%) Query: 17 VVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRY 76 +V +A AGDR AL+ ++E I PIV+RY RAR+G + +A+DVAQE+CLA T++ + Sbjct: 11 LVPQATAGDRRALQRIMEIIHPIVLRYARARIGGGRQP--TAEDVAQEICLAVATSIRNF 68 Query: 77 RDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQLAIEADSVTRM 136 D+GRPF+AF+YGI RD + P E VPE PE A+ +D R+ Sbjct: 69 VDQGRPFMAFVYGIASNKVADAHRAMSRDKSTPIEEVPETSPDTFTPEDFALVSDGSNRV 128 Query: 137 NELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRLKDEI 190 ELL++L K R+ILILRV+VGL RVAQHRAL L+ + Sbjct: 129 RELLDLLSEKARDILILRVIVGLSAEETAEMVGSTPGAVRVAQHRALTTLRSTL 182 >tr|Q8FS03|Q8FS03_COREF Tax_Id=152794 SubName: Full=Putative RNA polymerase sigma factor;[Corynebacterium efficiens] Length = 190 Score = 136 bits (342), Expect = 1e-30 Identities = 75/183 (40%), Positives = 107/183 (58%), Gaps = 3/183 (1%) Query: 9 IEGER-LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCL 67 ++ ER L +V +A AGDR AL+ ++E I P+V+RY RAR+G + + +DVAQE+CL Sbjct: 4 VDSERELADLVPQATAGDRRALQRIMEIIHPVVLRYARARIGGGRQP--TPEDVAQEICL 61 Query: 68 ATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQLA 127 A T++ + D+GRPF+AF+YGI RD + P E +P+ PE+ A Sbjct: 62 AVATSIHNFVDQGRPFMAFVYGIASNKVADAHRAMARDKSTPTEEIPDTEPDANSPEEFA 121 Query: 128 IEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRLK 187 + AD R+ ELL++L K R+ILILRV+VGL RVAQHRAL L+ Sbjct: 122 LVADGSNRVRELLDLLSEKARDILILRVMVGLSAEETAEMVDSTPGAVRVAQHRALTTLR 181 Query: 188 DEI 190 + Sbjct: 182 SAL 184 >tr|C2CQ73|C2CQ73_CORST Tax_Id=525268 SubName: Full=RNA polymerase sigma factor SigD;[Corynebacterium striatum ATCC 6940] Length = 187 Score = 135 bits (340), Expect = 2e-30 Identities = 75/184 (40%), Positives = 105/184 (57%), Gaps = 2/184 (1%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 M+ + L +V A+ G+R AL+ ++ I P V+RYCRAR+G + + +DV QE+C Sbjct: 1 MSDTDKELADLVPLAIDGNRRALQSIMRIIHPQVLRYCRARIGGGRQP--TPEDVTQEIC 58 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 LA T++ Y D+GRPF+A++YGI GRD + P E VPE + +A PE+ Sbjct: 59 LAVATSIGSYEDKGRPFMAYVYGIAFNKVTDAHRAMGRDQSNPTEEVPEGATKEANPEET 118 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 A+ AD R+ ELL+ L K R I+ILRV VGL RVAQHRAL +L Sbjct: 119 ALVADGSNRVRELLDTLSDKARNIIILRVFVGLSAEETAEIVGSTPGAVRVAQHRALSQL 178 Query: 187 KDEI 190 + I Sbjct: 179 RKAI 182 >tr|C8NMA1|C8NMA1_COREF Tax_Id=196164 (sigD)SubName: Full=RNA polymerase sigma-70 factor, ECF subfamily; Flags: Fragment;[Corynebacterium efficiens YS-314] Length = 182 Score = 135 bits (339), Expect = 3e-30 Identities = 72/174 (41%), Positives = 102/174 (58%), Gaps = 2/174 (1%) Query: 17 VVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRY 76 +V +A AGDR AL+ ++E I P+V+RY RAR+G + + +DVAQE+CLA T++ + Sbjct: 5 LVPQATAGDRRALQRIMEIIHPVVLRYARARIGGGRQP--TPEDVAQEICLAVATSIHNF 62 Query: 77 RDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQLAIEADSVTRM 136 D+GRPF+AF+YGI RD + P E +P+ PE+ A+ AD R+ Sbjct: 63 VDQGRPFMAFVYGIASNKVADAHRAMARDKSTPTEEIPDTEPDANSPEEFALVADGSNRV 122 Query: 137 NELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRLKDEI 190 ELL++L K R+ILILRV+VGL RVAQHRAL L+ + Sbjct: 123 RELLDLLSEKARDILILRVMVGLSAEETAEMVDSTPGAVRVAQHRALTTLRSAL 176 >tr|C0WIQ4|C0WIQ4_9CORY Tax_Id=525260 SubName: Full=RNA polymerase sigma factor SigD;[Corynebacterium accolens ATCC 49725] Length = 190 Score = 134 bits (337), Expect = 5e-30 Identities = 74/181 (40%), Positives = 104/181 (57%), Gaps = 2/181 (1%) Query: 7 MTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVC 66 M+ + + L +V A G R AL+ +L+ I P V+RYCRAR+G + +A+DV QE+C Sbjct: 1 MSDKDKELAELVPLAAGGSRRALQSILQIIHPQVLRYCRARIGGGRQP--TAEDVTQEIC 58 Query: 67 LATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQL 126 LA T++ Y D+GRPF+A++YGI GRD + P E +PE + +A PE+ Sbjct: 59 LAVATSIDSYEDKGRPFMAYVYGIAFNKVTDAHRAMGRDRSTPTEELPESTANEATPEEW 118 Query: 127 AIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRL 186 A+E D RM LL+ L K + I+ILRV VGL RVAQHRAL +L Sbjct: 119 ALENDGSNRMRALLDTLSDKAKNIVILRVFVGLSAEETADIVGSTPGAVRVAQHRALAQL 178 Query: 187 K 187 + Sbjct: 179 R 179 >tr|C3PL71|C3PL71_CORA7 Tax_Id=548476 (sigD)SubName: Full=ECF-family sigma factor D;[Corynebacterium aurimucosum] Length = 203 Score = 134 bits (336), Expect = 7e-30 Identities = 73/179 (40%), Positives = 104/179 (58%), Gaps = 2/179 (1%) Query: 12 ERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATIT 71 + L +V AV G R AL+ ++ I P V+RYCRAR+G + +A+DVAQE+CLA T Sbjct: 21 KELADLVPLAVDGSRCALQRIMRIIHPQVLRYCRARIGGHRQP--TAEDVAQEICLAVAT 78 Query: 72 ALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQLAIEAD 131 ++ Y+D+GRPF+A++YGI RD +P E +PE + DA PE+ A+E D Sbjct: 79 SIGTYKDKGRPFMAYVYGIAAHKVTDAHRALSRDHTHPTEDLPEDAAQDATPEESALEVD 138 Query: 132 SVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRLKDEI 190 R+ +L+ L K R+I+ILRV VGL RVAQHRAL +L+ + Sbjct: 139 GSNRVRAMLDTLSDKARDIIILRVFVGLSAEETAEIVESTPGAVRVAQHRALAQLRKSL 197 >tr|D1A313|D1A313_THECU Tax_Id=471852 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Thermomonospora curvata DSM 43183] Length = 200 Score = 133 bits (335), Expect = 9e-30 Identities = 77/178 (43%), Positives = 100/178 (56%), Gaps = 2/178 (1%) Query: 10 EGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLAT 69 EG+ L + A AV GD A+ +L +RP+VVRYCRAR+G + ADDVAQEVC+A Sbjct: 16 EGD-LGDLTALAVQGDPGAIEVLLSQVRPMVVRYCRARLGRISGHYHIADDVAQEVCIAV 74 Query: 70 ITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQLAIE 129 ++ALPRYRD GRPF +F++GI R A P E +P+ GPE+ + Sbjct: 75 LSALPRYRDMGRPFASFVFGIASHKIADALRSAVRS-AVPTEDLPDGPDDRPGPEETVVR 133 Query: 130 ADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRLK 187 R +LL LP QRE+++LRVV GL RVAQHRAL RL+ Sbjct: 134 YSEAERARDLLTRLPEHQRELVLLRVVAGLSAEETGNVLGMTAGAVRVAQHRALARLR 191 >tr|Q5YT95|Q5YT95_NOCFA Tax_Id=37329 SubName: Full=Putative sigma factor;[Nocardia farcinica] Length = 207 Score = 133 bits (334), Expect = 1e-29 Identities = 74/194 (38%), Positives = 109/194 (56%), Gaps = 5/194 (2%) Query: 4 SPSMTIEGERLDAVVAE----AVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSAD 59 SP++T E R+ A V + A AGD+ A+ ++L + P+V RYC AR+G ++AD Sbjct: 14 SPALT-ESRRVAAEVEQLIGPAAAGDQRAVSDILRAVHPLVRRYCGARLGNTAHLQVTAD 72 Query: 60 DVAQEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSA 119 DV QEV LAT+ A+PRYRD+G+ FLAF+YGI AYP VP+ S Sbjct: 73 DVVQEVLLATVKAIPRYRDQGKSFLAFVYGIAANKVADAFRRSQVHPAYPMAEVPDAASP 132 Query: 120 DAGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQ 179 +AGPE+ A+ + EL+++L RE+L++R+V+G RV Q Sbjct: 133 EAGPEEWALALERRAATRELMKVLAPAHREVLVMRIVLGWSAAQTAEAIGTSPGVVRVMQ 192 Query: 180 HRALQRLKDEIVAA 193 HRAL +L+ ++ A Sbjct: 193 HRALNKLRAQLELA 206 >tr|C0XUU5|C0XUU5_9CORY Tax_Id=525263 SubName: Full=RNA polymerase sigma factor SigD;[Corynebacterium lipophiloflavum DSM 44291] Length = 192 Score = 131 bits (330), Expect = 4e-29 Identities = 74/184 (40%), Positives = 103/184 (55%), Gaps = 2/184 (1%) Query: 13 RLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITA 72 +L +V A AGDR AL++V+ I P+V+RY RAR+G + +DVAQE+CLA T+ Sbjct: 9 QLADLVPLAAAGDRRALQDVVRIIHPLVLRYARARLGGGRMP--TPEDVAQEICLAVATS 66 Query: 73 LPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQLAIEADS 132 + +Y DRG+PF+AF+YGI RD P E VP+ + PE+ + +D Sbjct: 67 IEKYVDRGKPFMAFVYGIAFNKVADAHRSLARDKLTPTEQVPDEEISGETPEEFMLVSDG 126 Query: 133 VTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRLKDEIVA 192 R+ ELL++L K R+I+ILRV VGL RVAQHRAL L+ I Sbjct: 127 SNRVRELLDLLSDKARDIIILRVFVGLSAEETAEAVGGTAGAVRVAQHRALATLRKAIQE 186 Query: 193 AGDY 196 G + Sbjct: 187 GGSH 190 >tr|C6W898|C6W898_ACTMD Tax_Id=446462 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Actinosynnema mirum] Length = 243 Score = 131 bits (329), Expect = 5e-29 Identities = 76/182 (41%), Positives = 106/182 (58%), Gaps = 1/182 (0%) Query: 14 LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITAL 73 L +V A+AG A+ ++L ++P+V+RYCRARVG ER+ +SA+D+AQEVCLA + AL Sbjct: 56 LGDLVDHALAGRPRAVDQLLTRVQPLVLRYCRARVGMRERTLVSAEDIAQEVCLAVVAAL 115 Query: 74 PRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQLAIEADSV 133 RYR FLAF+YGI R + +P+ + + GPEQ A+ + + Sbjct: 116 GRYRYEPTSFLAFVYGIAAHKVADARRRAVRSRSEVVPELPDTPALEDGPEQRAVNGELI 175 Query: 134 TRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRLKDEIVAA 193 + +L LPA+QREIL+LRV VGL RVAQHRAL R++ E+ AA Sbjct: 176 GHITRMLGKLPARQREILVLRVAVGLTAEETAAAVGSTPGAVRVAQHRALTRMR-EMAAA 234 Query: 194 GD 195 D Sbjct: 235 VD 236 >tr|C8XCQ2|C8XCQ2_NAKMY Tax_Id=479431 SubName: Full=Transcriptional regulator, LuxR family;[Nakamurella multipartita] Length = 202 Score = 130 bits (326), Expect = 1e-28 Identities = 75/186 (40%), Positives = 101/186 (54%), Gaps = 1/186 (0%) Query: 6 SMTIEGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLS-ADDVAQE 64 S T + +D +V AV G+ A+ +++ I P VVRYCR R+ + S L+ ADD+AQE Sbjct: 6 SDTFDPTGIDDLVDRAVQGEPAAIEQLIGRILPAVVRYCRTRIPSGATSSLATADDIAQE 65 Query: 65 VCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPE 124 CLA +TALP +R G+PFLAF+YGI R + P VP+ S + GP+ Sbjct: 66 ACLAVLTALPTFRREGKPFLAFVYGIAAHKVADAHRAASRIRSTPMAEVPDAASTEGGPD 125 Query: 125 QLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQ 184 + + + ELLE LP QREIL LRVV GL RVAQHRAL Sbjct: 126 HYVAASSTAAIVEELLEHLPETQREILRLRVVAGLSAEETADALGMTAGAVRVAQHRALA 185 Query: 185 RLKDEI 190 +L+ + Sbjct: 186 KLRQRL 191 >tr|A6W5Z0|A6W5Z0_KINRD Tax_Id=266940 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Kineococcus radiotolerans] Length = 227 Score = 129 bits (325), Expect = 1e-28 Identities = 72/190 (37%), Positives = 108/190 (56%), Gaps = 6/190 (3%) Query: 3 ISPSMTIEGERLDA-----VVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLS 57 ++P + +R DA + A+ GD++A+ ++L +R +V RYCRA++G + + + Sbjct: 26 VTPGRSRPMDRTDAGGLQELATRALTGDQSAVADLLAAVRRLVHRYCRAKLGRLPGADHA 85 Query: 58 ADDVAQEVCLATITALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERR 117 A+D AQEVC+A +TALPRY+D GRPF AF+Y I R P E+VP+ Sbjct: 86 AEDAAQEVCIAVLTALPRYKDTGRPFEAFVYRIAANKVADAQRASYR-APVPTEAVPDAA 144 Query: 118 SADAGPEQLAIEADSVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRV 177 + + GPEQLA++ + LL+ LP K REI+ LRV G+ RV Sbjct: 145 TTEPGPEQLALDTFDAETVGRLLDTLPPKLREIITLRVGAGMSAEETGRALDMTAGAVRV 204 Query: 178 AQHRALQRLK 187 AQHRA+Q+L+ Sbjct: 205 AQHRAMQKLR 214 >tr|C4E5T7|C4E5T7_STRRS Tax_Id=479432 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Streptosporangium roseum DSM 43021] Length = 222 Score = 129 bits (324), Expect = 2e-28 Identities = 72/167 (43%), Positives = 93/167 (55%), Gaps = 1/167 (0%) Query: 21 AVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRG 80 AV GDR A+ ++ +RP+VVRYCRAR+G V ADDVAQEVC+A ++ALPRYRD G Sbjct: 48 AVQGDRTAIETLIAQLRPMVVRYCRARLGRVSGQYHIADDVAQEVCIAVLSALPRYRDMG 107 Query: 81 RPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQLAIEADSVTRMNELL 140 RPF +F++GI R A P + +P+ GPE+ + LL Sbjct: 108 RPFASFVFGIASHKVADALRSSVRS-AVPTQDLPDGPDEGPGPEETVVRYIEAEHARRLL 166 Query: 141 EILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRLK 187 LP QR++L+LRVV GL RVAQHRAL RL+ Sbjct: 167 SRLPDNQRQLLMLRVVSGLSAEETGNVLGMSPGAVRVAQHRALARLR 213 >tr|C4LGZ5|C4LGZ5_CORK4 Tax_Id=645127 (sigD)SubName: Full=ECF-family sigma factor D;[Corynebacterium kroppenstedtii] Length = 203 Score = 128 bits (322), Expect = 3e-28 Identities = 70/183 (38%), Positives = 106/183 (57%), Gaps = 2/183 (1%) Query: 14 LDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITAL 73 ++ +VA A +GDR+AL++V++ I P VV YCR R+ G +D AQE+C+A + +L Sbjct: 10 INGLVAAAASGDRDALQKVMDYIHPKVVMYCRHRLSDDSFPG--PEDTAQEICMAVLKSL 67 Query: 74 PRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQLAIEADSV 133 R+ DRG PF++++YGI GRD + P + +PE AGPE+LAI++D Sbjct: 68 DRFVDRGTPFMSYVYGIASHKVKDGYRSMGRDRSQPTDEIPESIHDAAGPEELAIQSDGR 127 Query: 134 TRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRLKDEIVAA 193 ++ LL+IL + REI+ILRV+ G RVAQ RA+ +LK + + Sbjct: 128 NKLLRLLDILGERPREIIILRVLEGYTSEETAKIIGSTPNAVRVAQFRAIAKLKKAMTDS 187 Query: 194 GDY 196 DY Sbjct: 188 PDY 190 >tr|C0E0N5|C0E0N5_9CORY Tax_Id=566549 SubName: Full=Putative uncharacterized protein;[Corynebacterium matruchotii ATCC 33806] Length = 187 Score = 127 bits (320), Expect = 5e-28 Identities = 74/179 (41%), Positives = 100/179 (55%), Gaps = 2/179 (1%) Query: 12 ERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATIT 71 ++L +V A GD ALR+V++ I P+V+RY RAR+ + +DVAQE+C A T Sbjct: 6 KQLAGLVPLASQGDSRALRKVIKIIYPMVLRYARARISGGRHP--TPEDVAQEICFAVAT 63 Query: 72 ALPRYRDRGRPFLAFLYGIXXXXXXXXXXXXGRDLAYPAESVPERRSADAGPEQLAIEAD 131 ++ ++ DRGRPF+AF+YGI RDL P E VP+ PE+LA+ A Sbjct: 64 SIHKFVDRGRPFMAFVYGIASNKVADAHRSYARDLTNPTEEVPDETVDHESPEELALVAA 123 Query: 132 SVTRMNELLEILPAKQREILILRVVVGLXXXXXXXXXXXXXXXXRVAQHRALQRLKDEI 190 R+ ELL++L K REI+ILRV VGL RVAQHRAL L+ I Sbjct: 124 GSNRVRELLDLLSEKPREIIILRVFVGLSAEETAEIVGSTPGAVRVAQHRALGTLRKAI 182 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.321 0.137 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 1,084,571,446 Number of extensions: 34186178 Number of successful extensions: 84004 Number of sequences better than 10.0: 562 Number of HSP's gapped: 84601 Number of HSP's successfully gapped: 562 Length of query: 197 Length of database: 3,846,993,858 Length adjustment: 130 Effective length of query: 67 Effective length of database: 2,381,217,468 Effective search space: 159541570356 Effective search space used: 159541570356 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 77 (34.3 bits)