BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_1231 (288 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HDX3|B2HDX3_MYCMM Tax_Id=216594 RecName: Full=Pseudouridine... 503 e-141 tr|A0PRL6|A0PRL6_MYCUA Tax_Id=362242 RecName: Full=Pseudouridine... 496 e-138 tr|Q7TWS5|Q7TWS5_MYCBO Tax_Id=1765 RecName: Full=Pseudouridine s... 390 e-107 tr|O07166|O07166_MYCTU Tax_Id=1773 RecName: Full=Pseudouridine s... 390 e-107 tr|C6DL37|C6DL37_MYCTK Tax_Id=478434 RecName: Full=Pseudouridine... 390 e-107 tr|C1AH74|C1AH74_MYCBT Tax_Id=561275 RecName: Full=Pseudouridine... 390 e-107 tr|A5U7X4|A5U7X4_MYCTA Tax_Id=419947 RecName: Full=Pseudouridine... 390 e-107 tr|A1KNV2|A1KNV2_MYCBP Tax_Id=410289 RecName: Full=Pseudouridine... 390 e-107 tr|Q7D5R2|Q7D5R2_MYCTU Tax_Id=1773 RecName: Full=Pseudouridine s... 390 e-107 tr|A5WSL5|A5WSL5_MYCTF Tax_Id=336982 RecName: Full=Pseudouridine... 390 e-107 tr|A4KLJ4|A4KLJ4_MYCTU Tax_Id=395095 RecName: Full=Pseudouridine... 390 e-107 tr|A2VP94|A2VP94_MYCTU Tax_Id=348776 RecName: Full=Pseudouridine... 390 e-107 tr|Q73UE6|Q73UE6_MYCPA Tax_Id=1770 RecName: Full=Pseudouridine s... 385 e-105 tr|A0QKH9|A0QKH9_MYCA1 Tax_Id=243243 RecName: Full=Pseudouridine... 380 e-103 tr|A1T5K0|A1T5K0_MYCVP Tax_Id=350058 RecName: Full=Pseudouridine... 346 2e-93 tr|A3PW03|A3PW03_MYCSJ Tax_Id=164757 RecName: Full=Pseudouridine... 338 4e-91 tr|Q1BCM1|Q1BCM1_MYCSS Tax_Id=164756 RecName: Full=Pseudouridine... 334 8e-90 tr|A1UCC2|A1UCC2_MYCSK Tax_Id=189918 RecName: Full=Pseudouridine... 334 8e-90 tr|A4TEZ4|A4TEZ4_MYCGI Tax_Id=350054 RecName: Full=Pseudouridine... 330 1e-88 tr|A0QT71|A0QT71_MYCS2 Tax_Id=246196 RecName: Full=Pseudouridine... 320 1e-85 tr|B1MFY3|B1MFY3_MYCA9 Tax_Id=561007 RecName: Full=Pseudouridine... 255 5e-66 tr|C8X7A1|C8X7A1_NAKMY Tax_Id=479431 SubName: Full=Pseudouridine... 253 1e-65 tr|D0LDE5|D0LDE5_GORB4 Tax_Id=526226 SubName: Full=Pseudouridine... 243 1e-62 tr|Q0SIE7|Q0SIE7_RHOSR Tax_Id=101510 SubName: Full=Possible pseu... 241 5e-62 tr|D1BBJ7|D1BBJ7_9MICO Tax_Id=446469 SubName: Full=23S RNA-speci... 239 2e-61 tr|C1ATF3|C1ATF3_RHOOB Tax_Id=632772 RecName: Full=Pseudouridine... 239 3e-61 tr|B5H9I7|B5H9I7_STRPR Tax_Id=457429 RecName: Full=Pseudouridine... 239 3e-61 tr|Q0S710|Q0S710_RHOSR Tax_Id=101510 RecName: Full=Pseudouridine... 237 1e-60 tr|B1W2A8|B1W2A8_STRGG Tax_Id=455632 RecName: Full=Pseudouridine... 236 2e-60 tr|C1ASQ9|C1ASQ9_RHOOB Tax_Id=632772 SubName: Full=Putative pseu... 236 3e-60 tr|C0ZNX4|C0ZNX4_RHOE4 Tax_Id=234621 RecName: Full=Pseudouridine... 236 3e-60 tr|C3JED9|C3JED9_RHOER Tax_Id=596309 RecName: Full=Pseudouridine... 235 4e-60 tr|B5I8K5|B5I8K5_9ACTO Tax_Id=463191 RecName: Full=Pseudouridine... 234 7e-60 tr|B4VA90|B4VA90_9ACTO Tax_Id=465541 RecName: Full=Pseudouridine... 233 2e-59 tr|Q5Z1U7|Q5Z1U7_NOCFA Tax_Id=37329 SubName: Full=Putative RNA p... 229 4e-58 tr|A4FF01|A4FF01_SACEN Tax_Id=405948 RecName: Full=Pseudouridine... 228 6e-58 tr|Q828G2|Q828G2_STRAW Tax_Id=33903 RecName: Full=Pseudouridine ... 228 8e-58 tr|D1BWX9|D1BWX9_9MICO Tax_Id=446471 SubName: Full=Pseudouridine... 224 9e-57 tr|Q9RJ76|Q9RJ76_STRCO Tax_Id=1902 SubName: Full=Putative riboso... 222 3e-56 tr|B5H002|B5H002_STRCL Tax_Id=443255 RecName: Full=Pseudouridine... 222 3e-56 tr|C0ZZV9|C0ZZV9_RHOE4 Tax_Id=234621 RecName: Full=Pseudouridine... 222 4e-56 tr|C3JTC9|C3JTC9_RHOER Tax_Id=596309 RecName: Full=Pseudouridine... 220 2e-55 tr|C6W980|C6W980_ACTMD Tax_Id=446462 RecName: Full=Pseudouridine... 219 3e-55 tr|C7R188|C7R188_JONDD Tax_Id=471856 RecName: Full=Pseudouridine... 215 4e-54 tr|C9NCI2|C9NCI2_9ACTO Tax_Id=591167 SubName: Full=Pseudouridine... 214 9e-54 tr|C2AJI9|C2AJI9_TSUPA Tax_Id=521096 RecName: Full=Pseudouridine... 213 3e-53 tr|B5GEF1|B5GEF1_9ACTO Tax_Id=465543 RecName: Full=Pseudouridine... 212 5e-53 tr|C9Z4F6|C9Z4F6_STRSW Tax_Id=680198 SubName: Full=Putative RNA ... 211 1e-52 tr|D0IVM7|D0IVM7_COMTE Tax_Id=688245 SubName: Full=Pseudouridine... 201 6e-50 tr|C1RI71|C1RI71_9CELL Tax_Id=446466 RecName: Full=Pseudouridine... 200 2e-49 >tr|B2HDX3|B2HDX3_MYCMM Tax_Id=216594 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium marinum] Length = 288 Score = 503 bits (1296), Expect = e-141 Identities = 260/288 (90%), Positives = 261/288 (90%) Query: 1 VKPAPLRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAE 60 +KPAPLRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAE Sbjct: 1 MKPAPLRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAE 60 Query: 61 PGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCEL 120 PGSYVYLYRDL LHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCEL Sbjct: 61 PGSYVYLYRDLPEEVPVPFEMPVLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCEL 120 Query: 121 GLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVI 180 GLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVI Sbjct: 121 GLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVI 180 Query: 181 RSRIVKRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFG 240 RSRIVKRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFG Sbjct: 181 RSRIVKRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFG 240 Query: 241 DPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 DPLYPNVIPE AQRIEFEDPLSGSRREFVSPREI Sbjct: 241 DPLYPNVIPESPHDLSDFSSPLSLLAQRIEFEDPLSGSRREFVSPREI 288 >tr|A0PRL6|A0PRL6_MYCUA Tax_Id=362242 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium ulcerans] Length = 288 Score = 496 bits (1277), Expect = e-138 Identities = 257/288 (89%), Positives = 259/288 (89%) Query: 1 VKPAPLRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAE 60 +KPAPLRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIV TATVA Sbjct: 1 MKPAPLRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVGTATVAG 60 Query: 61 PGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCEL 120 PGS+VYLYRDL LHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCEL Sbjct: 61 PGSHVYLYRDLPEEVPVPFEMPVLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCEL 120 Query: 121 GLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVI 180 GLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVI Sbjct: 121 GLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVI 180 Query: 181 RSRIVKRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFG 240 RSRIVKRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFG Sbjct: 181 RSRIVKRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFG 240 Query: 241 DPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 DPLYPNVIPE AQRIEFEDPLSGSRREFVSPREI Sbjct: 241 DPLYPNVIPESPHDLSDFSSPLSLLAQRIEFEDPLSGSRREFVSPREI 288 >tr|Q7TWS5|Q7TWS5_MYCBO Tax_Id=1765 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium bovis] Length = 305 Score = 390 bits (1002), Expect = e-107 Identities = 206/283 (72%), Positives = 221/283 (78%), Gaps = 3/283 (1%) Query: 6 LRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAEPGSYV 65 L V D LGP RVRL GG VLAEL+ RFG AARAKVLAGEVVD GA+VD+ TV PGS V Sbjct: 10 LSVHDVLGPVRVRLLGGSVLAELTARFGVAARAKVLAGEVVDNDGAVVDSGTVLPPGSVV 69 Query: 66 YLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCELGLPEL 125 +LYRDL LHQD DIVV DKPHFLATMPRGRHVAQTALVRLR ELGLPEL Sbjct: 70 HLYRDLPDEVPVPFDVPVLHQDADIVVVDKPHFLATMPRGRHVAQTALVRLRRELGLPEL 129 Query: 126 SPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVIRSRIV 185 SPAHRLDRLTAGVLLFTTRRE+RG YQT+FARG VRKTYLARA V LA PR++RSRIV Sbjct: 130 SPAHRLDRLTAGVLLFTTRREVRGSYQTMFARGLVRKTYLARAPVAPGLALPRLVRSRIV 189 Query: 186 KRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFGDPLYP 245 KRRGHLQAVCEPG PNAETLVE I+ +GLYRLTP TGRTHQLRVHMA+LG+PI GDPLYP Sbjct: 190 KRRGHLQAVCEPGVPNAETLVERIARDGLYRLTPTTGRTHQLRVHMAALGIPIMGDPLYP 249 Query: 246 NVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 NVI AQRIEF+DPL+GS REF S R + Sbjct: 250 NVI---SVAAHDFSTPLQLLAQRIEFDDPLTGSHREFASTRTL 289 >tr|O07166|O07166_MYCTU Tax_Id=1773 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium tuberculosis] Length = 305 Score = 390 bits (1002), Expect = e-107 Identities = 206/283 (72%), Positives = 221/283 (78%), Gaps = 3/283 (1%) Query: 6 LRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAEPGSYV 65 L V D LGP RVRL GG VLAEL+ RFG AARAKVLAGEVVD GA+VD+ TV PGS V Sbjct: 10 LSVHDVLGPVRVRLLGGSVLAELTARFGVAARAKVLAGEVVDDDGAVVDSGTVLPPGSVV 69 Query: 66 YLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCELGLPEL 125 +LYRDL LHQD DIVV DKPHFLATMPRGRHVAQTALVRLR ELGLPEL Sbjct: 70 HLYRDLPDEVPVPFDVPVLHQDADIVVVDKPHFLATMPRGRHVAQTALVRLRRELGLPEL 129 Query: 126 SPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVIRSRIV 185 SPAHRLDRLTAGVLLFTTRRE+RG YQT+FARG VRKTYLARA V LA PR++RSRIV Sbjct: 130 SPAHRLDRLTAGVLLFTTRREVRGSYQTMFARGLVRKTYLARAPVAPGLALPRLVRSRIV 189 Query: 186 KRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFGDPLYP 245 KRRGHLQAVCEPG PNAETLVE I+ +GLYRLTP TGRTHQLRVHMA+LG+PI GDPLYP Sbjct: 190 KRRGHLQAVCEPGVPNAETLVERIARDGLYRLTPTTGRTHQLRVHMAALGIPIMGDPLYP 249 Query: 246 NVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 NVI AQRIEF+DPL+GS REF S R + Sbjct: 250 NVI---SVAAHDFSTPLQLLAQRIEFDDPLTGSHREFASTRTL 289 >tr|C6DL37|C6DL37_MYCTK Tax_Id=478434 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium tuberculosis] Length = 305 Score = 390 bits (1002), Expect = e-107 Identities = 206/283 (72%), Positives = 221/283 (78%), Gaps = 3/283 (1%) Query: 6 LRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAEPGSYV 65 L V D LGP RVRL GG VLAEL+ RFG AARAKVLAGEVVD GA+VD+ TV PGS V Sbjct: 10 LSVHDVLGPVRVRLLGGSVLAELTARFGVAARAKVLAGEVVDDDGAVVDSGTVLPPGSVV 69 Query: 66 YLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCELGLPEL 125 +LYRDL LHQD DIVV DKPHFLATMPRGRHVAQTALVRLR ELGLPEL Sbjct: 70 HLYRDLPDEVPVPFDVPVLHQDADIVVVDKPHFLATMPRGRHVAQTALVRLRRELGLPEL 129 Query: 126 SPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVIRSRIV 185 SPAHRLDRLTAGVLLFTTRRE+RG YQT+FARG VRKTYLARA V LA PR++RSRIV Sbjct: 130 SPAHRLDRLTAGVLLFTTRREVRGSYQTMFARGLVRKTYLARAPVAPGLALPRLVRSRIV 189 Query: 186 KRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFGDPLYP 245 KRRGHLQAVCEPG PNAETLVE I+ +GLYRLTP TGRTHQLRVHMA+LG+PI GDPLYP Sbjct: 190 KRRGHLQAVCEPGVPNAETLVERIARDGLYRLTPTTGRTHQLRVHMAALGIPIMGDPLYP 249 Query: 246 NVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 NVI AQRIEF+DPL+GS REF S R + Sbjct: 250 NVI---SVAAHDFSTPLQLLAQRIEFDDPLTGSHREFASTRTL 289 >tr|C1AH74|C1AH74_MYCBT Tax_Id=561275 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium bovis] Length = 305 Score = 390 bits (1002), Expect = e-107 Identities = 206/283 (72%), Positives = 221/283 (78%), Gaps = 3/283 (1%) Query: 6 LRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAEPGSYV 65 L V D LGP RVRL GG VLAEL+ RFG AARAKVLAGEVVD GA+VD+ TV PGS V Sbjct: 10 LSVHDVLGPVRVRLLGGSVLAELTARFGVAARAKVLAGEVVDDDGAVVDSGTVLPPGSVV 69 Query: 66 YLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCELGLPEL 125 +LYRDL LHQD DIVV DKPHFLATMPRGRHVAQTALVRLR ELGLPEL Sbjct: 70 HLYRDLPDEVPVPFDVPVLHQDADIVVVDKPHFLATMPRGRHVAQTALVRLRRELGLPEL 129 Query: 126 SPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVIRSRIV 185 SPAHRLDRLTAGVLLFTTRRE+RG YQT+FARG VRKTYLARA V LA PR++RSRIV Sbjct: 130 SPAHRLDRLTAGVLLFTTRREVRGSYQTMFARGLVRKTYLARAPVAPGLALPRLVRSRIV 189 Query: 186 KRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFGDPLYP 245 KRRGHLQAVCEPG PNAETLVE I+ +GLYRLTP TGRTHQLRVHMA+LG+PI GDPLYP Sbjct: 190 KRRGHLQAVCEPGVPNAETLVERIARDGLYRLTPTTGRTHQLRVHMAALGIPIMGDPLYP 249 Query: 246 NVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 NVI AQRIEF+DPL+GS REF S R + Sbjct: 250 NVI---SVAAHDFSTPLQLLAQRIEFDDPLTGSHREFASTRTL 289 >tr|A5U7X4|A5U7X4_MYCTA Tax_Id=419947 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium tuberculosis] Length = 305 Score = 390 bits (1002), Expect = e-107 Identities = 206/283 (72%), Positives = 221/283 (78%), Gaps = 3/283 (1%) Query: 6 LRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAEPGSYV 65 L V D LGP RVRL GG VLAEL+ RFG AARAKVLAGEVVD GA+VD+ TV PGS V Sbjct: 10 LSVHDVLGPVRVRLLGGSVLAELTARFGVAARAKVLAGEVVDDDGAVVDSGTVLPPGSVV 69 Query: 66 YLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCELGLPEL 125 +LYRDL LHQD DIVV DKPHFLATMPRGRHVAQTALVRLR ELGLPEL Sbjct: 70 HLYRDLPDEVPVPFDVPVLHQDADIVVVDKPHFLATMPRGRHVAQTALVRLRRELGLPEL 129 Query: 126 SPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVIRSRIV 185 SPAHRLDRLTAGVLLFTTRRE+RG YQT+FARG VRKTYLARA V LA PR++RSRIV Sbjct: 130 SPAHRLDRLTAGVLLFTTRREVRGSYQTMFARGLVRKTYLARAPVAPGLALPRLVRSRIV 189 Query: 186 KRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFGDPLYP 245 KRRGHLQAVCEPG PNAETLVE I+ +GLYRLTP TGRTHQLRVHMA+LG+PI GDPLYP Sbjct: 190 KRRGHLQAVCEPGVPNAETLVERIARDGLYRLTPTTGRTHQLRVHMAALGIPIMGDPLYP 249 Query: 246 NVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 NVI AQRIEF+DPL+GS REF S R + Sbjct: 250 NVI---SVAAHDFSTPLQLLAQRIEFDDPLTGSHREFASTRTL 289 >tr|A1KNV2|A1KNV2_MYCBP Tax_Id=410289 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium bovis] Length = 305 Score = 390 bits (1002), Expect = e-107 Identities = 206/283 (72%), Positives = 221/283 (78%), Gaps = 3/283 (1%) Query: 6 LRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAEPGSYV 65 L V D LGP RVRL GG VLAEL+ RFG AARAKVLAGEVVD GA+VD+ TV PGS V Sbjct: 10 LSVHDVLGPVRVRLLGGSVLAELTARFGVAARAKVLAGEVVDDDGAVVDSGTVLPPGSVV 69 Query: 66 YLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCELGLPEL 125 +LYRDL LHQD DIVV DKPHFLATMPRGRHVAQTALVRLR ELGLPEL Sbjct: 70 HLYRDLPDEVPVPFDVPVLHQDADIVVVDKPHFLATMPRGRHVAQTALVRLRRELGLPEL 129 Query: 126 SPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVIRSRIV 185 SPAHRLDRLTAGVLLFTTRRE+RG YQT+FARG VRKTYLARA V LA PR++RSRIV Sbjct: 130 SPAHRLDRLTAGVLLFTTRREVRGSYQTMFARGLVRKTYLARAPVAPGLALPRLVRSRIV 189 Query: 186 KRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFGDPLYP 245 KRRGHLQAVCEPG PNAETLVE I+ +GLYRLTP TGRTHQLRVHMA+LG+PI GDPLYP Sbjct: 190 KRRGHLQAVCEPGVPNAETLVERIARDGLYRLTPTTGRTHQLRVHMAALGIPIMGDPLYP 249 Query: 246 NVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 NVI AQRIEF+DPL+GS REF S R + Sbjct: 250 NVI---SVAAHDFSTPLQLLAQRIEFDDPLTGSHREFASTRTL 289 >tr|Q7D5R2|Q7D5R2_MYCTU Tax_Id=1773 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium tuberculosis] Length = 305 Score = 390 bits (1002), Expect = e-107 Identities = 206/283 (72%), Positives = 221/283 (78%), Gaps = 3/283 (1%) Query: 6 LRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAEPGSYV 65 L V D LGP RVRL GG VLAEL+ RFG AARAKVLAGEVVD GA+VD+ TV PGS V Sbjct: 10 LSVHDVLGPVRVRLLGGSVLAELTARFGVAARAKVLAGEVVDDDGAVVDSGTVLPPGSVV 69 Query: 66 YLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCELGLPEL 125 +LYRDL LHQD DIVV DKPHFLATMPRGRHVAQTALVRLR ELGLPEL Sbjct: 70 HLYRDLPDEVPVPFDVPVLHQDADIVVVDKPHFLATMPRGRHVAQTALVRLRRELGLPEL 129 Query: 126 SPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVIRSRIV 185 SPAHRLDRLTAGVLLFTTRRE+RG YQT+FARG VRKTYLARA V LA PR++RSRIV Sbjct: 130 SPAHRLDRLTAGVLLFTTRREVRGSYQTMFARGLVRKTYLARAPVAPGLALPRLVRSRIV 189 Query: 186 KRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFGDPLYP 245 KRRGHLQAVCEPG PNAETLVE I+ +GLYRLTP TGRTHQLRVHMA+LG+PI GDPLYP Sbjct: 190 KRRGHLQAVCEPGVPNAETLVERIARDGLYRLTPTTGRTHQLRVHMAALGIPIMGDPLYP 249 Query: 246 NVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 NVI AQRIEF+DPL+GS REF S R + Sbjct: 250 NVI---SVAAHYFSTPLQLLAQRIEFDDPLTGSHREFASTRTL 289 >tr|A5WSL5|A5WSL5_MYCTF Tax_Id=336982 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium tuberculosis] Length = 305 Score = 390 bits (1002), Expect = e-107 Identities = 206/283 (72%), Positives = 221/283 (78%), Gaps = 3/283 (1%) Query: 6 LRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAEPGSYV 65 L V D LGP RVRL GG VLAEL+ RFG AARAKVLAGEVVD GA+VD+ TV PGS V Sbjct: 10 LSVHDVLGPVRVRLLGGSVLAELTARFGVAARAKVLAGEVVDDDGAVVDSGTVLPPGSVV 69 Query: 66 YLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCELGLPEL 125 +LYRDL LHQD DIVV DKPHFLATMPRGRHVAQTALVRLR ELGLPEL Sbjct: 70 HLYRDLPDEVPVPFDVPVLHQDADIVVVDKPHFLATMPRGRHVAQTALVRLRRELGLPEL 129 Query: 126 SPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVIRSRIV 185 SPAHRLDRLTAGVLLFTTRRE+RG YQT+FARG VRKTYLARA V LA PR++RSRIV Sbjct: 130 SPAHRLDRLTAGVLLFTTRREVRGSYQTMFARGLVRKTYLARAPVAPGLALPRLVRSRIV 189 Query: 186 KRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFGDPLYP 245 KRRGHLQAVCEPG PNAETLVE I+ +GLYRLTP TGRTHQLRVHMA+LG+PI GDPLYP Sbjct: 190 KRRGHLQAVCEPGVPNAETLVERIARDGLYRLTPTTGRTHQLRVHMAALGIPIMGDPLYP 249 Query: 246 NVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 NVI AQRIEF+DPL+GS REF S R + Sbjct: 250 NVI---SVAAHDFSTPLQLLAQRIEFDDPLTGSHREFASTRTL 289 >tr|A4KLJ4|A4KLJ4_MYCTU Tax_Id=395095 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium tuberculosis str. Haarlem] Length = 305 Score = 390 bits (1002), Expect = e-107 Identities = 206/283 (72%), Positives = 221/283 (78%), Gaps = 3/283 (1%) Query: 6 LRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAEPGSYV 65 L V D LGP RVRL GG VLAEL+ RFG AARAKVLAGEVVD GA+VD+ TV PGS V Sbjct: 10 LSVHDVLGPVRVRLLGGSVLAELTARFGVAARAKVLAGEVVDDDGAVVDSGTVLPPGSVV 69 Query: 66 YLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCELGLPEL 125 +LYRDL LHQD DIVV DKPHFLATMPRGRHVAQTALVRLR ELGLPEL Sbjct: 70 HLYRDLPDEVPVPFDVPVLHQDADIVVVDKPHFLATMPRGRHVAQTALVRLRRELGLPEL 129 Query: 126 SPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVIRSRIV 185 SPAHRLDRLTAGVLLFTTRRE+RG YQT+FARG VRKTYLARA V LA PR++RSRIV Sbjct: 130 SPAHRLDRLTAGVLLFTTRREVRGSYQTMFARGLVRKTYLARAPVAPGLALPRLVRSRIV 189 Query: 186 KRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFGDPLYP 245 KRRGHLQAVCEPG PNAETLVE I+ +GLYRLTP TGRTHQLRVHMA+LG+PI GDPLYP Sbjct: 190 KRRGHLQAVCEPGVPNAETLVERIARDGLYRLTPTTGRTHQLRVHMAALGIPIMGDPLYP 249 Query: 246 NVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 NVI AQRIEF+DPL+GS REF S R + Sbjct: 250 NVI---SVAAHDFSTPLQLLAQRIEFDDPLTGSHREFASTRTL 289 >tr|A2VP94|A2VP94_MYCTU Tax_Id=348776 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium tuberculosis C] Length = 305 Score = 390 bits (1002), Expect = e-107 Identities = 206/283 (72%), Positives = 221/283 (78%), Gaps = 3/283 (1%) Query: 6 LRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAEPGSYV 65 L V D LGP RVRL GG VLAEL+ RFG AARAKVLAGEVVD GA+VD+ TV PGS V Sbjct: 10 LSVHDVLGPVRVRLLGGSVLAELTARFGVAARAKVLAGEVVDDDGAVVDSGTVLPPGSVV 69 Query: 66 YLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCELGLPEL 125 +LYRDL LHQD DIVV DKPHFLATMPRGRHVAQTALVRLR ELGLPEL Sbjct: 70 HLYRDLPDEVPVPFDVPVLHQDADIVVVDKPHFLATMPRGRHVAQTALVRLRRELGLPEL 129 Query: 126 SPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVIRSRIV 185 SPAHRLDRLTAGVLLFTTRRE+RG YQT+FARG VRKTYLARA V LA PR++RSRIV Sbjct: 130 SPAHRLDRLTAGVLLFTTRREVRGSYQTMFARGLVRKTYLARAPVAPGLALPRLVRSRIV 189 Query: 186 KRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFGDPLYP 245 KRRGHLQAVCEPG PNAETLVE I+ +GLYRLTP TGRTHQLRVHMA+LG+PI GDPLYP Sbjct: 190 KRRGHLQAVCEPGVPNAETLVERIARDGLYRLTPTTGRTHQLRVHMAALGIPIMGDPLYP 249 Query: 246 NVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 NVI AQRIEF+DPL+GS REF S R + Sbjct: 250 NVI---SVAAHDFSTPLQLLAQRIEFDDPLTGSHREFASTRTL 289 >tr|Q73UE6|Q73UE6_MYCPA Tax_Id=1770 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium paratuberculosis] Length = 290 Score = 385 bits (989), Expect = e-105 Identities = 202/288 (70%), Positives = 224/288 (77%), Gaps = 3/288 (1%) Query: 1 VKPAPLRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAE 60 ++PAPL VRD LGPARVRL GGPVLAEL+ RFGAAARAKVLA EVV A GA+VD ATV Sbjct: 1 MRPAPLPVRDGLGPARVRLRGGPVLAELTARFGAAARAKVLAAEVVTADGAVVDEATVLP 60 Query: 61 PGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCEL 120 G+ VYLYR+L LH+D+DIVV DKPHFLATMPRGRHVAQTALVRLR EL Sbjct: 61 AGASVYLYRELPDEVVVPFDLPVLHRDDDIVVVDKPHFLATMPRGRHVAQTALVRLRREL 120 Query: 121 GLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVI 180 GLPELSPAHRLDRLTAGVLLFT RRE+RG YQTLF+RG V KTYLARAAVD L FPRV+ Sbjct: 121 GLPELSPAHRLDRLTAGVLLFTARREVRGAYQTLFSRGLVDKTYLARAAVDPALVFPRVL 180 Query: 181 RSRIVKRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFG 240 RIVK RG +QAVCEPG PNA T VEL+SP+GLYRL PRTGRTHQLR+ MASLG+PI G Sbjct: 181 AGRIVKHRGRMQAVCEPGPPNALTEVELLSPDGLYRLRPRTGRTHQLRLQMASLGIPIIG 240 Query: 241 DPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 DPLYPN+I AQRIEF+DP +G+RR FV+ R + Sbjct: 241 DPLYPNII---DVPADDFSTPLQLLAQRIEFDDPRTGARRVFVNRRTL 285 >tr|A0QKH9|A0QKH9_MYCA1 Tax_Id=243243 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium avium] Length = 287 Score = 380 bits (976), Expect = e-103 Identities = 201/284 (70%), Positives = 220/284 (77%), Gaps = 3/284 (1%) Query: 5 PLRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAEPGSY 64 PL VRD LGPARVRL GGPVLAEL+ RFGAAARAKVLA EVV A GA+VD ATV G+ Sbjct: 2 PLPVRDGLGPARVRLRGGPVLAELTARFGAAARAKVLAAEVVTADGAVVDEATVLPAGAS 61 Query: 65 VYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCELGLPE 124 VYLYR+L LH+D+DIVV DKPHFLATMPRGRHVAQTALVRLR ELGLPE Sbjct: 62 VYLYRELPDEVVVPFDLPVLHRDDDIVVVDKPHFLATMPRGRHVAQTALVRLRRELGLPE 121 Query: 125 LSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVIRSRI 184 LSPAHRLDRLTAGVLLFT RRE+RG YQTLF+RG V KTYLARAAVD L FPRV+ RI Sbjct: 122 LSPAHRLDRLTAGVLLFTARREVRGAYQTLFSRGLVDKTYLARAAVDPALVFPRVLAGRI 181 Query: 185 VKRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFGDPLY 244 VK RG +QAVCEPG PNA T VEL+SP+GLYRL PRTGRTHQLR+ MASLG+PI GDPLY Sbjct: 182 VKHRGRMQAVCEPGPPNALTEVELLSPDGLYRLRPRTGRTHQLRLQMASLGIPIIGDPLY 241 Query: 245 PNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 PN+I AQRIEF+DP +G+RR FVS R + Sbjct: 242 PNMI---DVPADDFSTPLQLLAQRIEFDDPRTGARRVFVSRRTL 282 >tr|A1T5K0|A1T5K0_MYCVP Tax_Id=350058 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium vanbaalenii] Length = 285 Score = 346 bits (888), Expect = 2e-93 Identities = 185/287 (64%), Positives = 210/287 (73%), Gaps = 4/287 (1%) Query: 2 KPAPLRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAEP 61 +PAPL VRD LGPARVRL GG VL EL++RFG AA AKVL GEV A GA+V +TV +P Sbjct: 3 RPAPLPVRDGLGPARVRLRGGAVLVELADRFGEAAAAKVLNGEVFTADGAVVTASTVLQP 62 Query: 62 GSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCELG 121 S VYLYRDL LH+D+++VV DKPHFLATMPRG HVAQTALVR+R EL Sbjct: 63 NSVVYLYRDLPDEVAVPFDVPVLHRDDNLVVVDKPHFLATMPRGSHVAQTALVRMRRELD 122 Query: 122 LPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVIR 181 LP+LSPAHRLDRLTAGVL+FTTRRE+RG YQT+FARG V KTYLA+++ D FP +R Sbjct: 123 LPQLSPAHRLDRLTAGVLVFTTRREVRGAYQTMFARGGVSKTYLAQSSAGTDRDFPITVR 182 Query: 182 SRIVKRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFGD 241 SRI+KRRG LQAV EPGEPNAETLVE + + YRL PRTGRTHQLRVHM SLGLPI GD Sbjct: 183 SRIIKRRGTLQAVEEPGEPNAETLVERVD-DRTYRLMPRTGRTHQLRVHMNSLGLPIAGD 241 Query: 242 PLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 PLYPNVI AQ +EF DPL+G R F S R + Sbjct: 242 PLYPNVI---DVAVGDFSTPLKLLAQCLEFTDPLAGVRLRFTSERTL 285 >tr|A3PW03|A3PW03_MYCSJ Tax_Id=164757 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium sp.] Length = 287 Score = 338 bits (867), Expect = 4e-91 Identities = 181/288 (62%), Positives = 209/288 (72%), Gaps = 4/288 (1%) Query: 1 VKPAPLRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAE 60 V+PAPL VRD LGPARVRL GG VL EL++RFG A AKV G V+ A G+ V ATV Sbjct: 4 VRPAPLPVRDGLGPARVRLRGGAVLVELADRFGEAVAAKVFDGGVLTADGSAVTPATVLP 63 Query: 61 PGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCEL 120 PG++VYLYRDL LH+D++IVV DKPHFLATMPRGRHVA+TA+VRLR L Sbjct: 64 PGTHVYLYRDLPVEVPVPFAMPVLHRDDNIVVVDKPHFLATMPRGRHVAETAVVRLRRAL 123 Query: 121 GLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVI 180 LPELSPAHRLDRLTAGVLLFTTRRE+RG YQT+F+ GAV K YLAR+A A + P V+ Sbjct: 124 DLPELSPAHRLDRLTAGVLLFTTRREIRGAYQTMFSDGAVAKVYLARSAGHATVDLPTVV 183 Query: 181 RSRIVKRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFG 240 RSRI+K RG LQA PGEPNAETLVE + + +YRLTPRTGRTHQLRVHMASLGLP+ G Sbjct: 184 RSRIIKERGRLQAFEAPGEPNAETLVEHLG-DDVYRLTPRTGRTHQLRVHMASLGLPLLG 242 Query: 241 DPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 DPLYP+VI A IEF+DPL+G FV+ R + Sbjct: 243 DPLYPDVI---DVAPDDFSTPLQLLANSIEFDDPLTGRPHRFVTGRTL 287 >tr|Q1BCM1|Q1BCM1_MYCSS Tax_Id=164756 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium sp.] Length = 287 Score = 334 bits (856), Expect = 8e-90 Identities = 179/288 (62%), Positives = 208/288 (72%), Gaps = 4/288 (1%) Query: 1 VKPAPLRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAE 60 V+PAPL VRD LGPARVRL GG VL EL++RFG A AKV G VV A G +V TV Sbjct: 4 VRPAPLPVRDGLGPARVRLRGGAVLVELADRFGEAVAAKVFDGGVVCADGTVVRPGTVLP 63 Query: 61 PGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCEL 120 PG++VYLYRDL L++D++IVV DKPHFLATMPRGRHVA+TA+VRLR L Sbjct: 64 PGTHVYLYRDLPVEVPVPFAMPVLYRDDNIVVVDKPHFLATMPRGRHVAETAVVRLRRAL 123 Query: 121 GLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVI 180 LPELSPAHRLDRLTAGVLLFTTRRE+RG YQT+F+ GAV K YLAR+A A + P V+ Sbjct: 124 DLPELSPAHRLDRLTAGVLLFTTRREIRGAYQTMFSDGAVAKVYLARSAGHAAVDLPTVV 183 Query: 181 RSRIVKRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFG 240 RSRI+K RG LQA PGEPNAETLVE + + +YRLTPRTGRTHQLRVHM+SLGLP+ G Sbjct: 184 RSRIIKERGRLQAFEAPGEPNAETLVEHLG-DDVYRLTPRTGRTHQLRVHMSSLGLPLLG 242 Query: 241 DPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 DPLYP+VI A IEF+DPL+G FV+ R + Sbjct: 243 DPLYPDVI---DVAPDDFADPLQLLAHSIEFDDPLTGRPHRFVTGRTL 287 >tr|A1UCC2|A1UCC2_MYCSK Tax_Id=189918 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium sp.] Length = 287 Score = 334 bits (856), Expect = 8e-90 Identities = 179/288 (62%), Positives = 208/288 (72%), Gaps = 4/288 (1%) Query: 1 VKPAPLRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAE 60 V+PAPL VRD LGPARVRL GG VL EL++RFG A AKV G VV A G +V TV Sbjct: 4 VRPAPLPVRDGLGPARVRLRGGAVLVELADRFGEAVAAKVFDGGVVCADGTVVRPGTVLP 63 Query: 61 PGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCEL 120 PG++VYLYRDL L++D++IVV DKPHFLATMPRGRHVA+TA+VRLR L Sbjct: 64 PGTHVYLYRDLPVEVPVPFAMPVLYRDDNIVVVDKPHFLATMPRGRHVAETAVVRLRRAL 123 Query: 121 GLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVI 180 LPELSPAHRLDRLTAGVLLFTTRRE+RG YQT+F+ GAV K YLAR+A A + P V+ Sbjct: 124 DLPELSPAHRLDRLTAGVLLFTTRREIRGAYQTMFSDGAVAKVYLARSAGHAAVDLPTVV 183 Query: 181 RSRIVKRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFG 240 RSRI+K RG LQA PGEPNAETLVE + + +YRLTPRTGRTHQLRVHM+SLGLP+ G Sbjct: 184 RSRIIKERGRLQAFEAPGEPNAETLVEHLG-DDVYRLTPRTGRTHQLRVHMSSLGLPLLG 242 Query: 241 DPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 DPLYP+VI A IEF+DPL+G FV+ R + Sbjct: 243 DPLYPDVI---DVAPDDFADPLQLLAHSIEFDDPLTGRPHRFVTGRTL 287 >tr|A4TEZ4|A4TEZ4_MYCGI Tax_Id=350054 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium gilvum] Length = 286 Score = 330 bits (846), Expect = 1e-88 Identities = 176/287 (61%), Positives = 202/287 (70%), Gaps = 6/287 (2%) Query: 2 KPAPLRVRDALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAEP 61 +P PL VRD LGPARVR+ GG ++ E R+G A KV+ GEV A G + D +TV P Sbjct: 3 RPPPLPVRDGLGPARVRVQGGLLVEEFQRRWGTGA--KVVDGEVFCADGTVADGSTVLPP 60 Query: 62 GSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCELG 121 G+YVYLYRDL LH+D+DIVV DKPHFLATMPRG HVAQTALVRLR EL Sbjct: 61 GAYVYLYRDLPDEVPVPFDIPVLHRDDDIVVVDKPHFLATMPRGSHVAQTALVRLRRELD 120 Query: 122 LPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVIR 181 LPELSPAHRLDRLTAGVLLFT RRE+RG YQTLF RG KTY+A ++ D FP IR Sbjct: 121 LPELSPAHRLDRLTAGVLLFTVRREVRGAYQTLFVRGEAAKTYVAHSSHATDREFPMTIR 180 Query: 182 SRIVKRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFGD 241 +R+VK RG LQAV EPGEPNAET+VE + EG+YRLTPRTGRTHQLRVHMA LG+PI GD Sbjct: 181 NRLVKHRGSLQAVEEPGEPNAETVVEYLD-EGMYRLTPRTGRTHQLRVHMAGLGIPITGD 239 Query: 242 PLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 PLYP+V+ AQ +EF DP+SG R F S R + Sbjct: 240 PLYPDVV---DVPPGDFGSPLRLLAQALEFTDPISGELRRFTSGRTL 283 >tr|A0QT71|A0QT71_MYCS2 Tax_Id=246196 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium smegmatis] Length = 291 Score = 320 bits (820), Expect = 1e-85 Identities = 172/279 (61%), Positives = 200/279 (71%), Gaps = 6/279 (2%) Query: 10 DALGPARVRLHGGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAEPGSYVYLYR 69 + +GPAR+++ GG ++ EL RFGA KV AGEV G ++D +TV PGS+VYLYR Sbjct: 18 EGIGPARLKVQGGRLVDELERRFGAGW--KVRAGEVFSRDGTVLDESTVLPPGSHVYLYR 75 Query: 70 DLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCELGLPELSPAH 129 DL L++D+DIVV DKPHFLATMPRG HV QTALVRLR EL LPEL+PAH Sbjct: 76 DLPDEVDVPFDIPVLYRDDDIVVVDKPHFLATMPRGGHVTQTALVRLRRELDLPELAPAH 135 Query: 130 RLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVIRSRIVKRRG 189 RLDRLTAGVLLFT RRELRG YQT+FARG V+KTYLA A +A P +RSRIVK RG Sbjct: 136 RLDRLTAGVLLFTVRRELRGAYQTMFARGDVQKTYLAHAEGVPKIALPATLRSRIVKHRG 195 Query: 190 HLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRVHMASLGLPIFGDPLYPNVIP 249 LQA EPGEPNAET VE + +GLYRLTPRTGRTHQLRVHMAS+GLPI GDP YP VI Sbjct: 196 RLQAFEEPGEPNAETYVEAVG-DGLYRLTPRTGRTHQLRVHMASIGLPITGDPFYPTVI- 253 Query: 250 EXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 A+R+ F+DP+SG+RREFVS R + Sbjct: 254 --DVAPGDFSRPLQLLAKRLMFDDPVSGARREFVSRRTL 290 >tr|B1MFY3|B1MFY3_MYCA9 Tax_Id=561007 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Mycobacterium abscessus] Length = 277 Score = 255 bits (651), Expect = 5e-66 Identities = 148/277 (53%), Positives = 175/277 (63%), Gaps = 7/277 (2%) Query: 16 RVRLH-GGPVLAELSERFGAAARAKVLAGEVVDAAGAIVDTATVAEPGSYVYLYRDLXXX 74 R+RLH GG V+ EL RFG AA +V GEVVD+AG V T G+ VY YR+ Sbjct: 2 RIRLHDGGRVVDELVARFGPAAVDQVDRGEVVDSAGMRVTAGTRLPAGAVVYTYREPAEE 61 Query: 75 XXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCELGLPELSPAHRLDRL 134 LH DE+++V DKPHFLATMPRGRHV +TALVRLR L LPEL+PAHRLDRL Sbjct: 62 ISVPFAIDVLHWDENVLVVDKPHFLATMPRGRHVTETALVRLRKMLDLPELAPAHRLDRL 121 Query: 135 TAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVIRSRIVKRRGHLQAV 194 TAGVLLFT RR+ R Y +LFA+ V K Y A A V L+ P +RSRIVKRR LQAV Sbjct: 122 TAGVLLFTVRRDARAAYHSLFAQRQVVKIYEALAPVKPGLSLPLTVRSRIVKRRSILQAV 181 Query: 195 CEPGEPNAETLVELISPE---GLYRLTPRTGRTHQLRVHMASLGLPIFGDPLYPNVIPEX 251 EPG NAET VEL+ G YRLTP TG+THQLRVHM S+G+PI DPLYP+V+ Sbjct: 182 EEPGPANAETRVELVDRHHAVGRYRLTPSTGQTHQLRVHMNSMGVPILNDPLYPDVV--- 238 Query: 252 XXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 A+ + F DPL+G + S R + Sbjct: 239 EVPPDDFTRPLQLLARTLAFRDPLNGKDVRYESGRAL 275 >tr|C8X7A1|C8X7A1_NAKMY Tax_Id=479431 SubName: Full=Pseudouridine synthase;[Nakamurella multipartita] Length = 299 Score = 253 bits (647), Expect = 1e-65 Identities = 149/297 (50%), Positives = 180/297 (60%), Gaps = 12/297 (4%) Query: 1 VKPAPLRVRDALGPARVRLH---GGPVLAELSERFGAAA---RAKVLAGEVVDAAGAIVD 54 ++ APL VRD L P+R+RL G V+ L ERF A A R KV AGEVVD G +VD Sbjct: 1 MRKAPLPVRDGLNPSRIRLPDEGSGTVVEYLLERFAADATRVREKVDAGEVVDGEGRVVD 60 Query: 55 TATVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALV 114 +T +V+LYRD LH+D D++V DKPHFLATMPRG H+ ++ALV Sbjct: 61 PSTPLTSSQWVFLYRDPAPEPRVPFEIEILHRDSDLLVVDKPHFLATMPRGLHIVESALV 120 Query: 115 RLRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADL 174 RLR EL LPELSP HRLDR+TAGVL+F+ R RG YQTLFA+ V K Y A A ADL Sbjct: 121 RLRRELDLPELSPIHRLDRVTAGVLVFSLRPANRGAYQTLFAQRKVTKYYEAVAGHRADL 180 Query: 175 AFPRVIRSRIVKRRGHLQAVCEPGEPNAETLVELISPEG---LYRLTPRTGRTHQLRVHM 231 P + SRIVK RG A PGEPNA T+VE ++ G LY L P TG+ HQLR+HM Sbjct: 181 TLPTTVESRIVKFRGTPTAQQVPGEPNARTVVERLAARGERALYGLHPHTGKVHQLRLHM 240 Query: 232 ASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 SLG+PI GD YP ++ A+ IEF DP +G RR F S R + Sbjct: 241 TSLGVPIVGDNFYPTLL---DTPRDDYSDPLQLLARSIEFPDPFTGRRRRFESRRTL 294 >tr|D0LDE5|D0LDE5_GORB4 Tax_Id=526226 SubName: Full=Pseudouridine synthase;[Gordonia bronchialis] Length = 317 Score = 243 bits (621), Expect = 1e-62 Identities = 146/299 (48%), Positives = 175/299 (58%), Gaps = 17/299 (5%) Query: 2 KPAPLRVRDALGPARVRLHGGP------------VLAELSERFGAAARAKVLAGEVVDAA 49 +P+PL +RD + RV L GP LA+L++ R + AGE+VDAA Sbjct: 5 RPSPLPIRDGVDATRVVLRAGPESTIGDCLRTTPALADLTDD---DLRLRAQAGEIVDAA 61 Query: 50 GAIVDTATVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVA 109 G V A + +YLYRDL L+ DE+IVV DKPHFLATMPRGRHV Sbjct: 62 GDPVSLDAPARLNTAIYLYRDLPDEVPIPFELPILYADENIVVVDKPHFLATMPRGRHVT 121 Query: 110 QTALVRLRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAA 169 +TALVRLR +LG +++PAHRLDRLTAGVLLFT RRE+R YQ LFA A K Y A A Sbjct: 122 ETALVRLRRQLGSDDVAPAHRLDRLTAGVLLFTLRREVRAAYQDLFATRAATKEYRALAP 181 Query: 170 VDADLAFPRVIRSRIVKRRGHLQAVCEPGEPNAETLVELISPEGLYRLTPRTGRTHQLRV 229 VD L IR+RI K G L+A G NA + + L+S GLYRL P TGRTHQLR+ Sbjct: 182 VDDALTTTVTIRNRIEKTAGDLRARVVDGPVNAISDITLLSDAGLYRLVPHTGRTHQLRL 241 Query: 230 HMASLGLPIFGDPLYPNVIPE--XXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPR 286 HMASL +PI DPLYP+V PE A +EF DP +G RR F S R Sbjct: 242 HMASLRVPIVDDPLYPDVRPELAQRPDVGDFSAPLRLVAHALEFTDPFTGERRRFESRR 300 >tr|Q0SIE7|Q0SIE7_RHOSR Tax_Id=101510 SubName: Full=Possible pseudouridylate synthase;[Rhodococcus sp.] Length = 297 Score = 241 bits (616), Expect = 5e-62 Identities = 145/295 (49%), Positives = 174/295 (58%), Gaps = 13/295 (4%) Query: 4 APLRVRDALGPARVRLHGG---PVLAELSERFGAAARAKVLA----GEVVDAAGAIVDTA 56 APL VR+ LGP R+R+ G +AE RA L+ GEVVD G +VD Sbjct: 4 APLPVRNGLGPDRIRMPAGVGTKTVAEFLVETYPDERAHWLSLIDGGEVVDEHGRVVDRG 63 Query: 57 TVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRL 116 T P +VY YRD LH+D+ +VV DKPHFLAT+PRG H+ +TA+VRL Sbjct: 64 TRYAPTRFVYFYRDPAPEIPVPFEIDILHRDDHLVVIDKPHFLATIPRGAHITETAVVRL 123 Query: 117 RCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAF 176 R L LP+L+PAHRLDR+TAGVL+F RRE R YQ LF V K Y A A D LAF Sbjct: 124 RRALDLPDLTPAHRLDRMTAGVLVFLIRREDRRPYQELFVSQQVTKEYEAVAGHDPALAF 183 Query: 177 PRVIRSRIVKRRGHLQAVCEPGEPNAETLVELISP---EGLYRLTPRTGRTHQLRVHMAS 233 PR IRSRIVK G + A EPGEPN+ET+V+L+ YRL P+TGRTHQLR+HM+S Sbjct: 184 PRTIRSRIVKEHGIMTATEEPGEPNSETVVDLLDTRDGRARYRLLPKTGRTHQLRLHMSS 243 Query: 234 LGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 LGLPI GD YP+ A+ IEF DP SG R F S R + Sbjct: 244 LGLPIEGDNYYPDF---RRSEPGDFSTPLRLLARAIEFTDPRSGEVRRFESRRTL 295 >tr|D1BBJ7|D1BBJ7_9MICO Tax_Id=446469 SubName: Full=23S RNA-specific pseudouridylate synthase;[Sanguibacter keddieii DSM 10542] Length = 303 Score = 239 bits (611), Expect = 2e-61 Identities = 149/301 (49%), Positives = 178/301 (59%), Gaps = 26/301 (8%) Query: 8 VRDALGPARVRL-HGGP---VLAELSERFGAAA---RAKVLAGEVVDAAGAIVDTATVAE 60 +RD L P R++L HG VLA L RF A R KV AGEVVD G + Sbjct: 1 MRDGLNPVRLQLPHGAEAATVLAYLVARFPTDAERMREKVAAGEVVDEIGRSLGPDAPYV 60 Query: 61 PGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCEL 120 G+ VYLYRD LH D+D++V DKPHFLA+ PRG +V ++A+VRLR +L Sbjct: 61 GGTLVYLYRDAAPEPRVPFEIDVLHHDDDLLVIDKPHFLASTPRGAYVVESAVVRLRRDL 120 Query: 121 GLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVI 180 GLPE+SPAHRLDR+TAGVL+ TTRRE+RG YQ LFA + KTY A A VD L PR + Sbjct: 121 GLPEISPAHRLDRITAGVLVLTTRREVRGAYQQLFASRTIHKTYEAVARVDPRLDLPRTV 180 Query: 181 RSRIVKRRGHLQAVCEPGEPNAETLVEL--ISPE--------GLYRLTPRTGRTHQLRVH 230 RSRIVK G L A PGEPNAE+ V L ++P G Y L P TG+THQLR+H Sbjct: 181 RSRIVKEHGTLVAQEVPGEPNAESRVSLAEVAPGAGDGGEALGRYVLEPHTGKTHQLRLH 240 Query: 231 MASLGLPIFGDPLYP---NVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPRE 287 MASLGLPI D YP +V P+ A+ I F DPLSG R F S R Sbjct: 241 MASLGLPILNDNFYPRFYDVAPD------DYSAPLQLLARSISFTDPLSGEPRTFTSRRA 294 Query: 288 I 288 + Sbjct: 295 L 295 >tr|C1ATF3|C1ATF3_RHOOB Tax_Id=632772 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Rhodococcus opacus] Length = 302 Score = 239 bits (610), Expect = 3e-61 Identities = 144/298 (48%), Positives = 176/298 (59%), Gaps = 13/298 (4%) Query: 1 VKPAPLRVRDALGPARVRLHG-GP---VLAELSERFG---AAARAKVLAGEVVDAAGAIV 53 V APL VRD L P R+R+ GP VL L RF R KV EVVD G + Sbjct: 4 VPDAPLPVRDGLNPTRLRMPDTGPWPTVLGYLVARFPHDETRLREKVATAEVVDERGQPI 63 Query: 54 DTATVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTAL 113 +T P +VYLYRD LH+DE+++V DKPHFLA+ PRG +VA++AL Sbjct: 64 TESTPFAPRRFVYLYRDPPVEKRVPFEIEILHRDENLLVVDKPHFLASTPRGAYVAESAL 123 Query: 114 VRLRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDAD 173 VRLR +L LPEL+PAHRLDRLTAGVL+FT RRE+R YQ+LF + V K Y A A D D Sbjct: 124 VRLRRDLDLPELTPAHRLDRLTAGVLIFTVRREVRRDYQSLFDQRRVTKEYEAVARYDPD 183 Query: 174 LAFPRVIRSRIVKRRGHLQAVCEPGEPNAETLVELISPEGL---YRLTPRTGRTHQLRVH 230 L P +RSRIVK RG L+A G N+E+ +EL+ G YRL P TG+THQLRVH Sbjct: 184 LLLPATVRSRIVKERGVLKAYEVDGPANSESRIELLEVHGAAARYRLLPHTGKTHQLRVH 243 Query: 231 MASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 M+SLG+PI GD YP+ A+ +EF DP SG R F S R + Sbjct: 244 MSSLGIPIHGDNFYPDF---YDVAADDYSTPLRLLARSVEFADPCSGVTRRFASVRSL 298 >tr|B5H9I7|B5H9I7_STRPR Tax_Id=457429 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Streptomyces pristinaespiralis ATCC 25486] Length = 314 Score = 239 bits (609), Expect = 3e-61 Identities = 144/300 (48%), Positives = 175/300 (58%), Gaps = 18/300 (6%) Query: 2 KPAPLRVRDALGPARVRLHGGP------VLAELSERFGAAARAK-----VLAGEVVDAAG 50 +PAPL RD + P R+RL P V L R+GAA A+ V G VDA G Sbjct: 9 RPAPLPQRDGIDPVRLRLPEDPDGVWPTVRDHLLARYGAAIGAERVDAMVREGRFVDAEG 68 Query: 51 AIVDTATVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQ 110 + + G ++ +RD +H+DE IV+ADKPHFLATMPRG HV + Sbjct: 69 PVTADESYTA-GRDLWFHRDFPAEERVPFEIGVVHRDEHIVIADKPHFLATMPRGSHVRE 127 Query: 111 TALVRLRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAV 170 TAL R+R L LP L PAHRLDRLTAG++LF R RG YQT+F VRK Y A A Sbjct: 128 TALARMRRGLDLPSLQPAHRLDRLTAGLVLFVVRPGDRGAYQTMFRDRLVRKEYEAVAPY 187 Query: 171 DADLAFPRVIRSRIVKRRGHLQAVCEPGEPNAETLVELISPE---GLYRLTPRTGRTHQL 227 D +A PR +RSRIVK RG L AV EPGEPN+E+ +EL+ G YRL P TGRTHQL Sbjct: 188 DPAVALPRTVRSRIVKERGVLTAVEEPGEPNSESRIELLEVRDGLGRYRLLPATGRTHQL 247 Query: 228 RVHMASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPRE 287 RVHM +LGLPI DPLYP V+P+ A+ +EF DP++G R F S E Sbjct: 248 RVHMNALGLPILHDPLYPVVLPD---GPDDYARPLQLLARALEFTDPVTGEPRSFRSRLE 304 >tr|Q0S710|Q0S710_RHOSR Tax_Id=101510 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Rhodococcus sp.] Length = 338 Score = 237 bits (605), Expect = 1e-60 Identities = 143/298 (47%), Positives = 174/298 (58%), Gaps = 13/298 (4%) Query: 1 VKPAPLRVRDALGPARVRLHG----GPVLAELSERFG---AAARAKVLAGEVVDAAGAIV 53 V APL VRD L P R+R+ VL L RF R KV A EVVD G + Sbjct: 40 VPDAPLPVRDGLNPTRLRMPDVGAWPTVLEYLVARFPHDETRLREKVAAAEVVDERGQPI 99 Query: 54 DTATVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTAL 113 AT P +VYLYRD LH+DED++V DKPHFLA+ PRG +VA++AL Sbjct: 100 TEATPFAPRKFVYLYRDPPVEKRVPFDIEILHRDEDLLVVDKPHFLASTPRGAYVAESAL 159 Query: 114 VRLRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDAD 173 VRLR + LPEL+PAHRLDRLTAGVL+FT RRE+R YQ+LF + V K Y A A D D Sbjct: 160 VRLRRDFDLPELTPAHRLDRLTAGVLIFTVRREVRRDYQSLFDQRRVVKEYEAVARYDPD 219 Query: 174 LAFPRVIRSRIVKRRGHLQAVCEPGEPNAETLVELISPEG---LYRLTPRTGRTHQLRVH 230 L P +RSRIVK RG L+A G N+E+ +EL+ G YRL P TG+THQLR+H Sbjct: 220 LRLPATVRSRIVKERGVLKAYEMDGPANSESRIELLEIHGDAARYRLLPHTGKTHQLRLH 279 Query: 231 MASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 M+SLG+PI GD YP+ A+ +EF DP SG R F S R + Sbjct: 280 MSSLGIPIHGDNFYPDF---YDVAADDYSTPLRLLARSVEFVDPYSGVTRRFASVRSL 334 >tr|B1W2A8|B1W2A8_STRGG Tax_Id=455632 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Streptomyces griseus subsp. griseus] Length = 312 Score = 236 bits (602), Expect = 2e-60 Identities = 146/295 (49%), Positives = 170/295 (57%), Gaps = 16/295 (5%) Query: 4 APLRVRDALGPARVRLHGGP------VLAELSERFGAAARAKVLAG-----EVVDAAGAI 52 APL RD + RVRL P V L+ RFG A A +AG +V A G Sbjct: 10 APLPQRDGIDAVRVRLPEDPEGLWATVGEHLAGRFGGAIGADRVAGMLDAGRIVGADGTA 69 Query: 53 VDTATVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTA 112 V + G Y++ +RD +++DE IVVADKPHFLATMPRGRH+ +TA Sbjct: 70 VRGSEPYAAGRYLWFHRDFSPEEPVPFPVGVVYRDERIVVADKPHFLATMPRGRHITETA 129 Query: 113 LVRLRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDA 172 RLR EL LP L PAHRLDRLTAG++LF R E RG YQTLF VRK Y A A D Sbjct: 130 AARLRRELELPALQPAHRLDRLTAGLVLFVVRPEDRGAYQTLFRDRRVRKEYEALAPYDP 189 Query: 173 DLAFPRVIRSRIVKRRGHLQAVCEPGEPNAETLVELISPE---GLYRLTPRTGRTHQLRV 229 D+A PR +RSRIVK RG L A EPGE N+E+ VEL+ G YRL P TGRTHQLRV Sbjct: 190 DVALPRTVRSRIVKERGVLAAREEPGEANSESRVELVERRGGVGRYRLLPATGRTHQLRV 249 Query: 230 HMASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVS 284 HM +LGLPI DPLYP V E A+ +EF DP+ G R F S Sbjct: 250 HMNALGLPIVHDPLYPVVAEE--GAPDDFSRPLQLLARVLEFADPVGGEPRRFDS 302 >tr|C1ASQ9|C1ASQ9_RHOOB Tax_Id=632772 SubName: Full=Putative pseudouridine synthase;[Rhodococcus opacus] Length = 297 Score = 236 bits (601), Expect = 3e-60 Identities = 144/295 (48%), Positives = 171/295 (57%), Gaps = 13/295 (4%) Query: 4 APLRVRDALGPARVRLHGG---PVLAELSERFGAAARAKVL----AGEVVDAAGAIVDTA 56 APL VR LGP R+R+ G +AE RA L AG+VVD G +VD Sbjct: 4 APLPVRGGLGPDRIRMPAGLGARTVAEFLVDTYPDERAHWLSLIDAGDVVDEHGRVVDRG 63 Query: 57 TVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRL 116 T P +VY YRD LH+D+ +VV DKPHFLAT+PRG H+ +TA+VRL Sbjct: 64 TRYAPTRFVYFYRDPAPEIPVPFEIDVLHRDDHLVVIDKPHFLATIPRGAHITETAVVRL 123 Query: 117 RCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAF 176 R L LP+L+PAHRLDR+TAGVL+F R E R YQ LF V K Y A A D L F Sbjct: 124 RRALDLPDLTPAHRLDRMTAGVLVFLIRPEDRRAYQELFVSQQVTKEYEAVAGHDPALEF 183 Query: 177 PRVIRSRIVKRRGHLQAVCEPGEPNAETLVELISP---EGLYRLTPRTGRTHQLRVHMAS 233 PR IRSRIVK G + A EPGEPN+ET+V+LI YRL P+TGRTHQLR+HM+S Sbjct: 184 PRTIRSRIVKEHGIMTATEEPGEPNSETVVDLIESRDGRARYRLLPKTGRTHQLRLHMSS 243 Query: 234 LGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 LGLPI GD YP+ A+ IEF DP SG R F S R + Sbjct: 244 LGLPIEGDNYYPDF---RRSEPGDFSTPLRLLARAIEFTDPRSGRVRRFESRRTL 295 >tr|C0ZNX4|C0ZNX4_RHOE4 Tax_Id=234621 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Rhodococcus erythropolis] Length = 323 Score = 236 bits (601), Expect = 3e-60 Identities = 141/298 (47%), Positives = 178/298 (59%), Gaps = 13/298 (4%) Query: 1 VKPAPLRVRDALGPARVRLHGGPVLAE----LSERFGAAA---RAKVLAGEVVDAAGAIV 53 V +PL VRD L P+R+R + A L ERF A R KV AGEVVD G + Sbjct: 17 VSRSPLPVRDGLNPSRIRQPDDGMWATTLDYLLERFPQDAVRLREKVAAGEVVDEKGVAI 76 Query: 54 DTATVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTAL 113 + P +VYLYRD L++DE+I+V DKPHFLA+ PRGR++A++AL Sbjct: 77 TETSGFAPRRFVYLYRDAPVEARVPFEIDILYRDENILVVDKPHFLASTPRGRYIAESAL 136 Query: 114 VRLRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDAD 173 VRLR +L LPELSPAHRLDR+TAG+LLFT + R YQT+FA V K Y A A DA Sbjct: 137 VRLRRDLDLPELSPAHRLDRVTAGLLLFTVHQAARRGYQTMFAERRVTKEYEAIARYDAQ 196 Query: 174 LAFPRVIRSRIVKRRGHLQAVCEPGEPNAETLVELISPE---GLYRLTPRTGRTHQLRVH 230 ++ P V+RSRIVK RG L+A GEPN+E+ +ELI YRL P TG+THQLR+H Sbjct: 197 VSTPVVVRSRIVKERGVLKAAEIEGEPNSESRIELIETRDGFARYRLIPHTGKTHQLRLH 256 Query: 231 MASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 M SLGLPI GD YP+ ++ +EFEDP +G + F S R + Sbjct: 257 MTSLGLPIHGDNFYPDF---YDVAAEDYSNPLRLLSKVLEFEDPTTGRLQRFESRRTL 311 >tr|C3JED9|C3JED9_RHOER Tax_Id=596309 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Rhodococcus erythropolis SK121] Length = 307 Score = 235 bits (600), Expect = 4e-60 Identities = 141/295 (47%), Positives = 178/295 (60%), Gaps = 13/295 (4%) Query: 4 APLRVRDALGPARVRLHGGPV----LAELSERFGAAA---RAKVLAGEVVDAAGAIVDTA 56 +PL VRD L P+R+R + L L ERF A R KV AGEVVD G + Sbjct: 4 SPLPVRDGLNPSRIRQPDDGMWTTTLDYLLERFPQDAVRLREKVAAGEVVDEKGVGITET 63 Query: 57 TVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRL 116 + P +VYLYRD L++DE+I+V DKPHFLA+ PRGR++A++ALVRL Sbjct: 64 SAFAPRRFVYLYRDAPVEARVPFEIDILYRDENILVVDKPHFLASTPRGRYIAESALVRL 123 Query: 117 RCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAF 176 R +L LPELSPAHRLDR+TAG+LLFT + R YQT+FA V K Y A A DA ++ Sbjct: 124 RRDLELPELSPAHRLDRVTAGLLLFTVHQAARRDYQTMFAERRVAKEYEAIARHDAQVST 183 Query: 177 PRVIRSRIVKRRGHLQAVCEPGEPNAETLVELISPE---GLYRLTPRTGRTHQLRVHMAS 233 P V+RSRIVK RG L+A GEPN+E+ +ELI YRLTP TG+THQLR+HM S Sbjct: 184 PVVVRSRIVKERGVLKAAEIEGEPNSESRIELIETRDGFARYRLTPHTGKTHQLRLHMTS 243 Query: 234 LGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 LGLPI GD YP+ ++ +EFEDP +G + F S R + Sbjct: 244 LGLPIHGDNFYPDF---YDVAAEDYSNPLRLLSKVLEFEDPKTGRLQRFESRRTL 295 >tr|B5I8K5|B5I8K5_9ACTO Tax_Id=463191 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Streptomyces sviceus ATCC 29083] Length = 317 Score = 234 bits (598), Expect = 7e-60 Identities = 140/294 (47%), Positives = 173/294 (58%), Gaps = 12/294 (4%) Query: 3 PAPLRVRDALGPARVRLHGGPVLAELSERFGA--AARAKVL-----AGEVVDAAGAIVDT 55 P PL RD + P RVRL G A + + A AA A+V+ G++VDAAG V Sbjct: 12 PPPLPQRDGVDPVRVRLPPGDAWATVRDHLVARLAADAEVIDGMLETGQIVDAAGHPVPR 71 Query: 56 ATVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVR 115 PG V+ +R+L +++DE +VVADKPHFLAT PRG HVA+TAL R Sbjct: 72 DMAYAPGMSVWFHRELPDEERVPFPIDVIYRDEHLVVADKPHFLATTPRGSHVAETALAR 131 Query: 116 LRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLA 175 LR +L +P L AHRLDRLTAG+++FT R E RG YQ+LF V K Y A A D L Sbjct: 132 LRRQLDIPALGAAHRLDRLTAGLVMFTVRPEERGAYQSLFRDRRVAKEYEAVARYDPTLP 191 Query: 176 FPRVIRSRIVKRRGHLQAVCEPGEPNAETLVELISPEG---LYRLTPRTGRTHQLRVHMA 232 P +RSRIVK RG L A GEPNA + VEL+ G YRLTP TG+THQLRVHM+ Sbjct: 192 LPHTVRSRIVKERGVLAAQEVDGEPNAVSRVELLEHRGERARYRLTPGTGQTHQLRVHMS 251 Query: 233 SLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPR 286 +LG+PI GDPLYP + A+ +EF DP++G FVSPR Sbjct: 252 ALGVPILGDPLYP--VVTAPVAPGDFRRPLQLLARVLEFTDPVTGHEHRFVSPR 303 >tr|B4VA90|B4VA90_9ACTO Tax_Id=465541 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Streptomyces sp. Mg1] Length = 324 Score = 233 bits (593), Expect = 2e-59 Identities = 141/301 (46%), Positives = 175/301 (58%), Gaps = 18/301 (5%) Query: 3 PAPLRVRDALGPARVRLHGGP------VLAELSERFGAAARAKVL-----AGEVVDAAGA 51 PAPL + P R+RL P + A L++R+ A+ + AG V+ G Sbjct: 8 PAPLPQVAGIDPVRLRLPSDPDGLWPDLGAYLTDRYAGTRGAETMPALLRAGRVLGMGGR 67 Query: 52 IVDTATVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQT 111 ++ EPGSY++ +RD+ +++DE ++VADKPHFLAT PRG HV QT Sbjct: 68 VLRPEDPYEPGSYLWFHRDMPPEPAVPFPIGVVYRDEHLLVADKPHFLATTPRGSHVTQT 127 Query: 112 ALVRLRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVD 171 AL RLR EL LP LSPAHRLDRLTAG+++F+ R E RG YQ LF V K Y A A +D Sbjct: 128 ALARLRDELDLPALSPAHRLDRLTAGLVMFSIRPEDRGAYQLLFQNRRVGKQYEALAPLD 187 Query: 172 ADLAFPRVIRSRIVKRRGHLQAVCEP-GEPNAETLVELISPE---GLYRLTPRTGRTHQL 227 LA PR +RSRI K RG + A P GEPNAETLVEL + G YRLTP TGRTHQL Sbjct: 188 PALALPRTLRSRIEKTRGVIAAAEIPGGEPNAETLVELAESKGDTGRYRLTPHTGRTHQL 247 Query: 228 RVHMASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPRE 287 RVHM SLGLPI GDP+YP V A+ +EF DP++G S R Sbjct: 248 RVHMNSLGLPILGDPVYPKV---TDPDPLDYRRPLQLLARVLEFTDPVTGIAHRLESRRT 304 Query: 288 I 288 + Sbjct: 305 L 305 >tr|Q5Z1U7|Q5Z1U7_NOCFA Tax_Id=37329 SubName: Full=Putative RNA pseudouridylate synthase;[Nocardia farcinica] Length = 309 Score = 229 bits (583), Expect = 4e-58 Identities = 138/295 (46%), Positives = 171/295 (57%), Gaps = 15/295 (5%) Query: 5 PLRVRDALGPARVRL----HGGPVLAELSERFGAAARAKV----LAGEVVDAAGAIVDTA 56 PL R L PAR+RL + L R A ++ AG +VD G I A Sbjct: 8 PLPKRHGLDPARLRLPEAGEWATIRDHLVHRLPRVAPERIDELLRAGAIVDLDGPIAPDA 67 Query: 57 TVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRL 116 PG V+ +RDL +H+DE ++V DKPHFLAT+PRG+H+ QTALVRL Sbjct: 68 PYV-PGGAVWFHRDLPDEVEVPFDLTVVHRDETVLVVDKPHFLATIPRGQHIRQTALVRL 126 Query: 117 RCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAF 176 R +LGLP+L PAHRLDR+TAG++LF RG YQT+F R VRK Y A A D +LA Sbjct: 127 REQLGLPDLVPAHRLDRVTAGLILFVVDPARRGAYQTMFHRRTVRKQYEAIAPFDPELAL 186 Query: 177 PRVIRSRIVKRRGHLQAVCEPGEPNAETLVELISPE---GLYRLTPRTGRTHQLRVHMAS 233 PRV+RSRIVK + L A GEPNAETLVEL+ G YRLTP TGRTHQLR+HM S Sbjct: 187 PRVVRSRIVKEKHVLAAREVEGEPNAETLVELLEHRDGLGRYRLTPHTGRTHQLRLHMNS 246 Query: 234 LGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 LG+PI GD YP + + A +EF DP++G R F + R + Sbjct: 247 LGVPILGDDFYPVLTDK---PVHEFTRPLQLLAAVLEFTDPVTGEPRRFETTRSL 298 >tr|A4FF01|A4FF01_SACEN Tax_Id=405948 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Saccharopolyspora erythraea] Length = 312 Score = 228 bits (581), Expect = 6e-58 Identities = 142/291 (48%), Positives = 170/291 (58%), Gaps = 14/291 (4%) Query: 4 APLRVRDALGPARVRLHG-GP---VLAELSERFGAAA-RAKVLAGE--VVDAAGAIVDTA 56 +PL RD L R+RL GP V L +R A R + E VVD G + A Sbjct: 7 SPLPQRDGLDAVRLRLPSEGPWETVRDHLVDRLPIGAERVDRMFREQAVVDLHGPVAADA 66 Query: 57 TVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRL 116 PGS+V+ +RDL +H+D+D++V DKPHFLAT PRGRHVAQTALVRL Sbjct: 67 PFV-PGSFVWFHRDLPDEVPVPFEIGVVHRDDDLLVVDKPHFLATTPRGRHVAQTALVRL 125 Query: 117 RCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAF 176 R EL +P+LSPAHRLDR TAG+++F R ELR YQ +F V K Y A A D L Sbjct: 126 RRELSIPDLSPAHRLDRTTAGLVMFVIRPELRKSYQEMFQNRLVHKEYEAVAPFDPGLEL 185 Query: 177 PRVIRSRIVKRRGHLQAVCEPGEPNAETLVELISPE---GLYRLTPRTGRTHQLRVHMAS 233 PR +RSRIVK RG L A PG PNAETLVEL+ G YRL P+TGRTHQLRVH+ S Sbjct: 186 PRTVRSRIVKERGVLAAQEVPGPPNAETLVELLEHRDGLGRYRLLPKTGRTHQLRVHLNS 245 Query: 234 LGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVS 284 +G+PI GD YP V A+ +EF DP+SG R F S Sbjct: 246 IGIPILGDDTYPVV---NDPAPDDFGRPLQLLAKALEFTDPVSGLHRRFES 293 >tr|Q828G2|Q828G2_STRAW Tax_Id=33903 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Streptomyces avermitilis] Length = 321 Score = 228 bits (580), Expect = 8e-58 Identities = 134/296 (45%), Positives = 171/296 (57%), Gaps = 12/296 (4%) Query: 1 VKPAPLRVRDALGPARVRLHGGPVLAELSERFGAAARA-------KVLAGEVVDAAGAIV 53 + P+PL R+ + P RV+L G + + A A + AG +V A G V Sbjct: 15 IPPSPLPQREGVDPVRVKLPQGGAWGTVRDHLVARLAAGDGVVDGMLDAGLIVGADGRPV 74 Query: 54 DTATVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTAL 113 + T PG +V+ +R+L +++DE IVVADKPHFLAT PRG HVA+T L Sbjct: 75 ERDTAYVPGMFVWFHRELPDEERVPFALDVVYRDEHIVVADKPHFLATTPRGSHVAETVL 134 Query: 114 VRLRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDAD 173 RLR +LG+PEL AHRLDRLTAG++LFT R RG YQ+LF V K Y A A D + Sbjct: 135 ARLRRDLGIPELGAAHRLDRLTAGLVLFTVRPGERGAYQSLFRDKLVHKEYEAVATYDPE 194 Query: 174 LAFPRVIRSRIVKRRGHLQAVCEPGEPNAETLVELI---SPEGLYRLTPRTGRTHQLRVH 230 +A PR +RSRI+K RG L A GEPNA + +EL G YRL PRTG+THQLRVH Sbjct: 195 VALPRTVRSRILKERGLLAAREVAGEPNAVSRIELTEHRDGRGRYRLLPRTGQTHQLRVH 254 Query: 231 MASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPR 286 M +LGLPI GDPLYP + A+ +EF DP++G F+S R Sbjct: 255 MNALGLPILGDPLYP--VVTDPGPAGDFRRPLQLLARVLEFTDPVTGHEHRFLSER 308 >tr|D1BWX9|D1BWX9_9MICO Tax_Id=446471 SubName: Full=Pseudouridine synthase;[Xylanimonas cellulosilytica DSM 15894] Length = 309 Score = 224 bits (571), Expect = 9e-57 Identities = 139/304 (45%), Positives = 170/304 (55%), Gaps = 23/304 (7%) Query: 5 PLRVRDALGPARVRL--------HGGPVLAELSERFG---AAARAKVLAGEVVDAAGAIV 53 PL VRD L P R+ L + L RF R KV AGEVV G V Sbjct: 5 PLPVRDGLNPTRLVLPHDVESVVRWRTAVEYLEGRFPDDVVRLREKVAAGEVVTGRGVRV 64 Query: 54 DTATVAEPGSYVYLYRDLXXXXXXXXXXXX---LHQDEDIVVADKPHFLATMPRGRHVAQ 110 D T EP ++YLYRD LH+DE+++V DKPH +ATMPRGR V Q Sbjct: 65 DVDTPYEPRGFLYLYRDPPSDEPRALSLAEIEVLHRDENLLVVDKPHLVATMPRGRWVTQ 124 Query: 111 TALVRLRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAV 170 T LV LR L LPEL+PAHRLDR TAGVL+ T R +RG YQ LF VRK Y A A + Sbjct: 125 TVLVHLRRTLDLPELAPAHRLDRPTAGVLVLTVRASVRGAYQDLFQERRVRKVYEAVAPL 184 Query: 171 DAD-LAFPRVIRSRIVKRRGHLQAVCEPGEPNAETLVELISPE-----GLYRLTPRTGRT 224 D + P +RSRIVK RG A EPGEPNAE+ ++LI + GLYRL P TG+T Sbjct: 185 PGDGVELPTTVRSRIVKHRGVAPAQEEPGEPNAESRIDLIGRDEGRGLGLYRLEPHTGKT 244 Query: 225 HQLRVHMASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVS 284 HQLR+H+ASLG+PI DP +P + P+ A+ + F DP +G +R F S Sbjct: 245 HQLRLHLASLGMPILHDPFWPVLRPD---SDGDPATPLQLLARSLTFADPFTGEQRTFAS 301 Query: 285 PREI 288 R + Sbjct: 302 RRRL 305 >tr|Q9RJ76|Q9RJ76_STRCO Tax_Id=1902 SubName: Full=Putative ribosomal pseudouridine synthase;[Streptomyces coelicolor] Length = 324 Score = 222 bits (566), Expect = 3e-56 Identities = 144/299 (48%), Positives = 170/299 (56%), Gaps = 15/299 (5%) Query: 3 PAPLRVRDALGPARVRLHG-GP---VLAELSERFGAAARAKVL----AGEVVDAAGAIVD 54 P+PL RD + RVRL GP V L+ER AA V AG V A G V Sbjct: 9 PSPLPQRDGIDAVRVRLPADGPWSTVREYLTERLSAAGAGVVDGMFDAGVFVGADGRPVA 68 Query: 55 TATVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALV 114 EPG +V+ +R+L +++D IVVADKPHFLAT PRG HV QTAL Sbjct: 69 GDAPYEPGMFVWFHRELPAEVPVPFPLEIVYRDAHIVVADKPHFLATTPRGGHVTQTALA 128 Query: 115 RLRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADL 174 RLR EL +P L AHRLDRLTAG++LFT R RG YQ LFA V K Y A A DA L Sbjct: 129 RLRRELDIPALGAAHRLDRLTAGLVLFTVRPGERGAYQGLFADRRVHKVYEAVAPYDAAL 188 Query: 175 AFPRVIRSRIVKRRGHLQAVCEPGEPNAETLVELIS--PE---GLYRLTPRTGRTHQLRV 229 A PR +RSRI+K RG L A GEPNA T VEL++ PE G YRL P TG+THQLRV Sbjct: 189 ALPRTVRSRILKERGVLAAREVAGEPNAVTRVELLAHRPEHGLGRYRLVPGTGQTHQLRV 248 Query: 230 HMASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 H+ +LG+PI GDPLYP V A+ + F DP++G F S R + Sbjct: 249 HLNALGVPILGDPLYPEV--AAPVPAGDFRRPLQLLARELGFTDPVTGREHRFRSGRSL 305 >tr|B5H002|B5H002_STRCL Tax_Id=443255 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Streptomyces clavuligerus ATCC 27064] Length = 309 Score = 222 bits (566), Expect = 3e-56 Identities = 134/296 (45%), Positives = 165/296 (55%), Gaps = 18/296 (6%) Query: 3 PAPLRVRDALGPARVRLHGGP------VLAELSERFGAAARAKVLA-----GEVVDAAGA 51 P+PL R + P RVRL P V A R+G A A + G +V G Sbjct: 10 PSPLAQRQGVDPVRVRLPQDPEGAWPTVYAHFVARYGGAIGAARVGELFAEGRIVSVDGV 69 Query: 52 IVDTATVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQT 111 + A G Y++ +RD +H+D ++V DKPHFLAT PRG H+ +T Sbjct: 70 VAADEPYAA-GRYLWFHRDFAPEPRVPFEIRIVHRDARLLVVDKPHFLATTPRGSHITET 128 Query: 112 ALVRLRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVD 171 A+ RLR LGLP L PAHRLDRLTAG++LF R E RG YQTLF VRK Y A AA D Sbjct: 129 AVARLRHGLGLPLLQPAHRLDRLTAGLVLFVVRPEDRGAYQTLFRDRGVRKEYEAVAAYD 188 Query: 172 ADLAFPRVIRSRIVKRRGHLQAVCEPGEPNAETLVELISPE---GLYRLTPRTGRTHQLR 228 + PR +RSRIVK RG L A PGEPN+ET +EL+ G YRL P TG+THQLR Sbjct: 189 PAVELPRTVRSRIVKERGVLAAREVPGEPNSETRIELLEHRGGLGRYRLLPATGQTHQLR 248 Query: 229 VHMASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVS 284 VHM+ LGLPI DP+YP V + A+ +EF DP +G+ R F S Sbjct: 249 VHMSGLGLPILHDPVYPVVRAD---GPEDFGRPLSLLARTLEFTDPFTGASRRFES 301 >tr|C0ZZV9|C0ZZV9_RHOE4 Tax_Id=234621 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Rhodococcus erythropolis] Length = 304 Score = 222 bits (565), Expect = 4e-56 Identities = 127/300 (42%), Positives = 171/300 (57%), Gaps = 18/300 (6%) Query: 4 APLRVRDALGPARVRLHGGPVLAELSERFGAAARAK-------VLAGEVVDAAGAIVDTA 56 APL +R+ LGP R+R+ + E + V AG+VVD G + + Sbjct: 4 APLPIRNGLGPDRLRMPAESSAHTVLEHLIGEHPGERDLWADLVNAGDVVDEHGRKITSR 63 Query: 57 TVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRL 116 T +P +VY YR+ L++D+ I+V DKPHFLAT+PRG H+ ++A+VRL Sbjct: 64 TPYQPTRFVYFYREPAPEIPVPHEIKILYRDDSILVIDKPHFLATIPRGAHIVESAVVRL 123 Query: 117 RCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAF 176 R +L LP+L+P HRLDR+TAGV++FT +LR YQ LFA + K Y A A D +L F Sbjct: 124 RRDLDLPDLAPVHRLDRMTAGVIVFTVTPDLRRPYQELFAEQRIVKEYEAIAGFDPELTF 183 Query: 177 PRVIRSRIVKRRGHLQAVCEPGEPNAETLVELIS--------PEGLYRLTPRTGRTHQLR 228 PR +RSRI K G + A GEPN+ET +ELI G YRL PRTGRTHQLR Sbjct: 184 PRTVRSRINKVHGEMTATEIDGEPNSETSIELIETITDSAGRTLGRYRLLPRTGRTHQLR 243 Query: 229 VHMASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 +H+ SLG+PI GD YP +P A+ +E+ DP++G R FVS R + Sbjct: 244 LHLNSLGVPIVGDNYYPEYLP---AVPGDFSTPLRLLARALEYPDPITGQTRRFVSSRSL 300 >tr|C3JTC9|C3JTC9_RHOER Tax_Id=596309 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Rhodococcus erythropolis SK121] Length = 304 Score = 220 bits (560), Expect = 2e-55 Identities = 126/300 (42%), Positives = 170/300 (56%), Gaps = 18/300 (6%) Query: 4 APLRVRDALGPARVRLHGGPVLAELSERFGAAARAK-------VLAGEVVDAAGAIVDTA 56 APL +R+ LGP R+R+ + E + V AG+VVD G + + Sbjct: 4 APLPIRNGLGPDRLRMPAESSARTVLEHLVGKHPGERDLWADLVSAGDVVDEHGRKITSR 63 Query: 57 TVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRL 116 T +P +VY YR+ L++D+ I+V DKPHFLAT+PRG H+ ++A+VRL Sbjct: 64 TPYQPTRFVYFYREPAPEIPVPHEIEILYRDDSILVIDKPHFLATIPRGAHIVESAVVRL 123 Query: 117 RCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAF 176 R +L LP+L+P HRLDR+TAGV++FT +LR YQ LFA + K Y A A +L F Sbjct: 124 RRDLDLPDLAPVHRLDRMTAGVIVFTVTPDLRRPYQELFAEQRIVKEYEAIAGFAPELTF 183 Query: 177 PRVIRSRIVKRRGHLQAVCEPGEPNAETLVELIS--------PEGLYRLTPRTGRTHQLR 228 PR +RSRI K G + A GEPN+ET +ELI G YRL PRTGRTHQLR Sbjct: 184 PRTVRSRINKVHGEMTATEIAGEPNSETSIELIEVITDSAGRTLGRYRLLPRTGRTHQLR 243 Query: 229 VHMASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 +H+ SLG+PI GD YP +P A+ +E+ DP++G R FVS R + Sbjct: 244 LHLNSLGVPIVGDNYYPEYLP---AVPGDFSTPLRLLARALEYPDPITGQTRRFVSSRSL 300 >tr|C6W980|C6W980_ACTMD Tax_Id=446462 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Actinosynnema mirum] Length = 302 Score = 219 bits (558), Expect = 3e-55 Identities = 136/293 (46%), Positives = 169/293 (57%), Gaps = 14/293 (4%) Query: 2 KPAPLRVRDALGPARVRLHGGPVLAELSERFG-----AAARAKVLA--GEVVDAAGAIVD 54 +PA L R L PAR+R+ A L + A R ++ G V D G + Sbjct: 6 RPAGLSQRHGLDPARLRMPEDGRWATLRDHLVDRLPVPAERVDLMLAEGRVHDLTGPVAP 65 Query: 55 TATVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALV 114 A PG V+ +RDL +H+D+ I+V DKPHFLAT+PRG+HV +TALV Sbjct: 66 NAPFV-PGGAVWFHRDLPVEVPVPFEISVVHRDDAILVVDKPHFLATIPRGKHVVETALV 124 Query: 115 RLRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADL 174 RLR +L LP LSPAHRLDR+TAG+++F LRGRYQT+FA VRK Y A A V DL Sbjct: 125 RLRRDLDLPALSPAHRLDRVTAGLVMFVVDPALRGRYQTMFADRLVRKEYEAIAPVRDDL 184 Query: 175 AFPRVIRSRIVKRRGHLQAVCEPGEPNAETLVELISPE---GLYRLTPRTGRTHQLRVHM 231 PRV+RSRIVK +G + A PG NAET VEL G YRL P TGRTHQLRVH+ Sbjct: 185 ELPRVVRSRIVKEKGVITAQEVPGPVNAETRVELAERRGDLGRYRLLPTTGRTHQLRVHL 244 Query: 232 ASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVS 284 + LG+PI GD YP V+ E A+ +EF DP++G R F S Sbjct: 245 SGLGVPIVGDDFYP-VLRE--KPLDDFTDPLQLLAKVLEFTDPVTGEHRRFTS 294 >tr|C7R188|C7R188_JONDD Tax_Id=471856 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Jonesia denitrificans] Length = 362 Score = 215 bits (548), Expect = 4e-54 Identities = 124/264 (46%), Positives = 155/264 (58%), Gaps = 16/264 (6%) Query: 38 AKVLAGEVVDAAGAIVDTATVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPH 97 AK+ AGEVVD G + + PG ++LYRD L +D+D+ V DKPH Sbjct: 88 AKLRAGEVVDEIGRPLTLESPYRPGGLIHLYRDPDPEPEVPFACDVLFEDDDLYVIDKPH 147 Query: 98 FLATMPRGRHVAQTALVRLRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFAR 157 FLA+ P+GR+V +TALVRLR + G PELSPAHRLDRLTAGVL+FT RRELRG YQ LFA+ Sbjct: 148 FLASTPKGRYVTETALVRLRKDTGNPELSPAHRLDRLTAGVLVFTKRRELRGAYQELFAQ 207 Query: 158 GAVRKTYLARAAVDADLAFPRVIRSRIVKRRGHLQAVCEPGEPNAETLVEL--------- 208 V K Y A A + + P +RSRIVK G ++A PGEPN ETLV L Sbjct: 208 RQVTKVYQAVAPTNPAVDLPATVRSRIVKEHGIMRAHTMPGEPNTETLVTLTDTATLPAG 267 Query: 209 ----ISPEGLYRLTPRTGRTHQLRVHMASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXX 264 + GLY L P TG+THQLR+HMASLGL I D YP+ Sbjct: 268 HDVAVQDVGLYTLYPHTGKTHQLRIHMASLGLGIVYDNYYPDF---YHVESDDYRHPLQL 324 Query: 265 XAQRIEFEDPLSGSRREFVSPREI 288 + ++ F DPLSG +R+F S + + Sbjct: 325 LSSQLAFTDPLSGVQRDFRSRKTL 348 >tr|C9NCI2|C9NCI2_9ACTO Tax_Id=591167 SubName: Full=Pseudouridine synthase;[Streptomyces flavogriseus ATCC 33331] Length = 312 Score = 214 bits (545), Expect = 9e-54 Identities = 131/295 (44%), Positives = 162/295 (54%), Gaps = 16/295 (5%) Query: 4 APLRVRDALGPARVRLHGGP------VLAELSERFGAA-----ARAKVLAGEVVDAAGAI 52 APL R + P RVRL P V L +RF A A + G V A G Sbjct: 10 APLPQRAGVDPVRVRLPADPAGTWPTVRDHLLDRFAGAIGSGRVDAMLAEGGFVGADGCA 69 Query: 53 VDTATVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTA 112 V G +++ +RD +H+D+ +V+ADKPHFLAT PRGRH+ +T Sbjct: 70 VRADEPYTAGRHLWFHRDFAPERPVPFPVGVVHRDDHLVIADKPHFLATTPRGRHITETL 129 Query: 113 LVRLRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDA 172 + RLR LGLP L PAHRLDRLTAG++L R RG YQTLF VRK Y A A D Sbjct: 130 VARLRDTLGLPGLQPAHRLDRLTAGLVLCVVRAGDRGAYQTLFRDRLVRKEYEAVAPYDP 189 Query: 173 DLAFPRVIRSRIVKRRGHLQAVCEPGEPNAETLVELISPEGL---YRLTPRTGRTHQLRV 229 L PR +RSRIVK RG + A EPG N+E+ +EL+ G YRL P TGRTHQLRV Sbjct: 190 GLVRPRTVRSRIVKERGVIAAREEPGPANSESRIELLEHRGALGRYRLLPATGRTHQLRV 249 Query: 230 HMASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVS 284 HM +LGLP+ DP+YP V P+ A+ +EF DP++G R F S Sbjct: 250 HMNALGLPLVNDPVYPVVEPD--PEREDFGRPLQLLARVLEFTDPVTGEPRRFES 302 >tr|C2AJI9|C2AJI9_TSUPA Tax_Id=521096 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Tsukamurella paurometabola DSM 20162] Length = 286 Score = 213 bits (541), Expect = 3e-53 Identities = 129/267 (48%), Positives = 156/267 (58%), Gaps = 9/267 (3%) Query: 28 LSERF-GAAA--RAKVLAGEVVDAAGAIVDTATVAEPGSYVYLYRDLXXXXXXXXXXXXL 84 L RF G AA + +G VV + GA + A+ V+LYR+L + Sbjct: 21 LQARFPGTAAYLAGEYASGSVVTSGGAPLGPASPVTARQAVWLYRELPHEVPVPFPMPII 80 Query: 85 HQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCELGLPELSPAHRLDRLTAGVLLFTTR 144 H D+ IVV DKPHFLATMPRG V Q+ALVRLR ELG P LSPAHRLDRLTAGVLLFT Sbjct: 81 HADDRIVVVDKPHFLATMPRGARVVQSALVRLRRELGEPSLSPAHRLDRLTAGVLLFTRD 140 Query: 145 RELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVIRSRIVKRRGHLQAVCEPGEPNAET 204 +RG YQ LFA+G RK Y A A + DL P + SRI K G ++A G NA + Sbjct: 141 PAVRGPYQQLFAQGLARKEYAALAPLRRDLELPATVESRIEKTPGIMRAYEVNGPVNARS 200 Query: 205 LVELISPEGL---YRLTPRTGRTHQLRVHMASLGLPIFGDPLYPNVIPEXXXXXXXXXXX 261 VEL + G YRL P TG+THQLR+HM+ LG+PI GDPLYP Sbjct: 201 HVELEAELGTIARYRLRPETGKTHQLRLHMSRLGVPILGDPLYPE---PREVIDGDFTDP 257 Query: 262 XXXXAQRIEFEDPLSGSRREFVSPREI 288 A+R+ F DP+ G+ REFVS RE+ Sbjct: 258 LRLLARRLAFVDPIDGAEREFVSSREL 284 >tr|B5GEF1|B5GEF1_9ACTO Tax_Id=465543 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Streptomyces sp. SPB74] Length = 323 Score = 212 bits (539), Expect = 5e-53 Identities = 136/304 (44%), Positives = 165/304 (54%), Gaps = 23/304 (7%) Query: 4 APLRVRDALGPARVRL---HGGPVLAELSERF---GAAARAKVLAGEVVDAAGAIVDTAT 57 +PL RD + R+R+ H G + A L R A + AGE VDA G Sbjct: 9 SPLPQRDGIDAVRLRVPDSHEGTLRAHLRARLPVPSGVLDAMLAAGEFVDAGGRPAHGGE 68 Query: 58 VAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLR 117 PG+ + +R +H+DE ++V DKPHFLAT PRG H+ +TAL RLR Sbjct: 69 RL-PGATYWFHRTRAPEPEVPFALRVVHRDERLLVCDKPHFLATTPRGSHITETALARLR 127 Query: 118 CELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFP 177 +LG+P LSPAHRLDRLTAG++LF R E RG YQ+LFAR VRK Y A AA L P Sbjct: 128 RDLGIPALSPAHRLDRLTAGLVLFVVRPEDRGAYQSLFARKEVRKEYEAVAAYAPSLPLP 187 Query: 178 RVIRSRIVKRRGHLQAVCEPG-EPNAETLVELI------SPEGL------YRLTPRTGRT 224 R +RS +VK RG L A G PN+ET V L+ + GL YRL PRTGRT Sbjct: 188 RTVRSHLVKERGDLAAREVAGAAPNSETRVALLGVRTAPAHAGLPPLLARYRLLPRTGRT 247 Query: 225 HQLRVHMASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVS 284 HQLR HM LGLP+ GDPLYP V A+ + F DPLSG R F S Sbjct: 248 HQLRAHMNGLGLPLLGDPLYPRV---TDPDPTDYRRPLQLLARTLAFTDPLSGEPRRFTS 304 Query: 285 PREI 288 R + Sbjct: 305 GRAL 308 >tr|C9Z4F6|C9Z4F6_STRSW Tax_Id=680198 SubName: Full=Putative RNA pseudouridine synthase;[Streptomyces scabies] Length = 305 Score = 211 bits (536), Expect = 1e-52 Identities = 133/282 (47%), Positives = 157/282 (55%), Gaps = 13/282 (4%) Query: 16 RVRLHGGPVLA----ELSERFGAAARA---KVLAGEVVDAAGAIVDTATVAEPGSYVYLY 68 RVRL G A L ER A A + AG +VDA G V PG V+ + Sbjct: 2 RVRLPQGSAWATVRDHLVERLAAGAGVIDGMLDAGLIVDADGRAVSRERAYVPGMSVWFH 61 Query: 69 RDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVRLRCELGLPELSPA 128 RDL +++D+ IVV DKPHFLAT PRG H+ +TAL RLR EL +P LS A Sbjct: 62 RDLPHEVPVPFPLDIVYRDDHIVVVDKPHFLATTPRGSHITETALARLRRELAVPTLSAA 121 Query: 129 HRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLAFPRVIRSRIVKRR 188 HRLDRLTAG++LFT R RG YQ+LF V K Y A A D + P +RSRIVK R Sbjct: 122 HRLDRLTAGLVLFTVRPGERGAYQSLFRDRLVTKEYEAVAPYDPSVVLPCTVRSRIVKER 181 Query: 189 GHLQAVCEPGEPNAETLVELISPE----GLYRLTPRTGRTHQLRVHMASLGLPIFGDPLY 244 G + A GEPNA + VEL+ YRL PRTG+THQLR HMASLGLPI GDPLY Sbjct: 182 GVMAAREVEGEPNAVSGVELLDRRAGGPARYRLLPRTGQTHQLRAHMASLGLPILGDPLY 241 Query: 245 PNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPR 286 P V A+ +EF DP++G FVS R Sbjct: 242 PLV--RDPVPPGDFRRPLQLLARALEFTDPVTGLAHRFVSGR 281 >tr|D0IVM7|D0IVM7_COMTE Tax_Id=688245 SubName: Full=Pseudouridine synthase;[Comamonas testosteroni CNB-2] Length = 305 Score = 201 bits (512), Expect = 6e-50 Identities = 127/297 (42%), Positives = 167/297 (56%), Gaps = 15/297 (5%) Query: 3 PAPLRVRDALGPARVRLH---GGPVLAELSERFGAAARA----KVLAGEVVDAAGAIVDT 55 P L VRD + P+ V L GG ++ L ER A RA ++ AG+VV AG Sbjct: 7 PKVLPVRDGVSPSCVVLPSQGGGLLIDFLCERLPAVGRADWLRRMAAGQVVSEAGDKAGP 66 Query: 56 ATVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPHFLATMPRGRHVAQTALVR 115 PG Y YR+L +H+D D++VADKPHFL +P G ++ T LVR Sbjct: 67 NAAFMPGLRYYYYRELEAEPEIPFAAEVIHRDADLLVADKPHFLPVVPAGHYLQNTLLVR 126 Query: 116 LRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFARGAVRKTYLARAAVDADLA 175 LR E LPELSP HR+DR TAG+++F+ +R RG YQ LF A+ K Y A AA A+L+ Sbjct: 127 LRREFDLPELSPIHRIDRDTAGLVVFSVQRATRGIYQGLFRDRAIHKVYEAVAAYRAELS 186 Query: 176 FPRVIRSRIVKRRGHLQAVCE-PGEPNAETLVELISPE---GLYRLTPRTGRTHQLRVHM 231 FPR SR ++ GH + E GEPN+ TL+E+I YRL+P +G+ HQLRVHM Sbjct: 187 FPREHASR-MEESGHFFRMHEVAGEPNSRTLMEIIEHNKAWARYRLSPVSGKRHQLRVHM 245 Query: 232 ASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFEDPLSGSRREFVSPREI 288 A+LGLP+ GD YP V A+ + F+DPL+G RREF S R + Sbjct: 246 AALGLPLRGDAFYPVV---NDPEPGDYSRPLQLLARSLAFDDPLTGQRREFTSRRSL 299 >tr|C1RI71|C1RI71_9CELL Tax_Id=446466 RecName: Full=Pseudouridine synthase; EC=5.4.99.-;[Cellulomonas flavigena DSM 20109] Length = 271 Score = 200 bits (508), Expect = 2e-49 Identities = 119/255 (46%), Positives = 146/255 (57%), Gaps = 7/255 (2%) Query: 38 AKVLAGEVVDAAGAIVDTATVAEPGSYVYLYRDLXXXXXXXXXXXXLHQDEDIVVADKPH 97 A + G VDA G ++ +V+ +R++ LH+DE +VV DKP Sbjct: 17 AMLAEGRFVDADGRVLRDDDPYVAHRHVWFHRNVRAEPEVPGRIHVLHRDERLVVVDKPP 76 Query: 98 FLATMPRGRHVAQTALVRLRCELGLPELSPAHRLDRLTAGVLLFTTRRELRGRYQTLFAR 157 FL+T+PRGRH+ Q+ +VRLR EL LPELSP HRLDR T+GVLL T + R YQT F R Sbjct: 77 FLSTIPRGRHIVQSVVVRLRAELDLPELSPLHRLDRATSGVLLLATEQRWRAPYQTAFER 136 Query: 158 GAVRKTYLARAAVDADLAFPRVIRSRIVKRRGHLQAVCEPGEP-NAETLVEL---ISPEG 213 AV KTY A A + DL P +R+ I K RG A PG P NAET VEL + G Sbjct: 137 RAVDKTYRALAPLRDDLELPADVRNHIRKVRGTAHAEVVPGAPVNAETHVELEREVDGLG 196 Query: 214 LYRLTPRTGRTHQLRVHMASLGLPIFGDPLYPNVIPEXXXXXXXXXXXXXXXAQRIEFED 273 +YRLTPRTGRTHQLR+H+ LG+PI GD LYP E A RI F D Sbjct: 197 VYRLTPRTGRTHQLRLHLCGLGIPIVGDRLYP---VERDLDLDDFTDPLQLLAVRIAFTD 253 Query: 274 PLSGSRREFVSPREI 288 P+ G REF S R + Sbjct: 254 PVDGRGREFHSSRTL 268 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.323 0.140 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 1,889,815,750 Number of extensions: 70334631 Number of successful extensions: 165569 Number of sequences better than 10.0: 6114 Number of HSP's gapped: 159515 Number of HSP's successfully gapped: 6310 Length of query: 288 Length of database: 3,846,993,858 Length adjustment: 136 Effective length of query: 152 Effective length of database: 2,313,566,250 Effective search space: 351662070000 Effective search space used: 351662070000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 79 (35.0 bits)