BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MMAR_1245
         (103 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,275,203 sequences; 3,846,993,858 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|B2HDY7|B2HDY7_MYCMM Tax_Id=216594 (usfY)SubName: Full=Mycobac...   153   5e-36
tr|A0PRK2|A0PRK2_MYCUA Tax_Id=362242 (usfY)SubName: Full=Mycobac...   150   3e-35
tr|Q7D5S0|Q7D5S0_MYCTU Tax_Id=1773 (usfY)SubName: Full=Putative ...   141   3e-32
tr|P96893|P96893_MYCBO Tax_Id=1765 (usfY)SubName: Full=Putative ...   141   3e-32
tr|C6DL25|C6DL25_MYCTK Tax_Id=478434 SubName: Full=Putative unch...   141   3e-32
tr|C1AH62|C1AH62_MYCBT Tax_Id=561275 (usfY)SubName: Full=Putativ...   141   3e-32
tr|A5U7W2|A5U7W2_MYCTA Tax_Id=419947 (usfY)SubName: Full=Putativ...   141   3e-32
tr|A1KNU0|A1KNU0_MYCBP Tax_Id=410289 (usfY)SubName: Full=Putativ...   141   3e-32
tr|Q7BW14|Q7BW14_MYCTU Tax_Id=1773 (usfY)SubName: Full=UsfY;[Myc...   141   3e-32
tr|A5WSK3|A5WSK3_MYCTF Tax_Id=336982 SubName: Full=Putative unch...   141   3e-32
tr|A4KLI4|A4KLI4_MYCTU Tax_Id=395095 SubName: Full=Putative unch...   141   3e-32
tr|A2VP84|A2VP84_MYCTU Tax_Id=348776 SubName: Full=Putative unch...   141   3e-32
tr|Q73UG0|Q73UG0_MYCPA Tax_Id=1770 SubName: Full=Putative unchar...   130   4e-29
tr|A0QKG3|A0QKG3_MYCA1 Tax_Id=243243 SubName: Full=UsfY protein;...   130   4e-29
tr|A0QTC5|A0QTC5_MYCS2 Tax_Id=246196 SubName: Full=UsfY protein;...    79   2e-13
tr|A4TF08|A4TF08_MYCGI Tax_Id=350054 SubName: Full=Putative unch...    75   2e-12
tr|Q1BCJ7|Q1BCJ7_MYCSS Tax_Id=164756 SubName: Full=Putative unch...    73   1e-11
tr|A3PW29|A3PW29_MYCSJ Tax_Id=164757 SubName: Full=Putative unch...    73   1e-11
tr|A1UCE6|A1UCE6_MYCSK Tax_Id=189918 SubName: Full=Putative unch...    73   1e-11
tr|A0QTB1|A0QTB1_MYCS2 Tax_Id=246196 SubName: Full=UsfY protein;...    70   7e-11
tr|A1T5N4|A1T5N4_MYCVP Tax_Id=350058 SubName: Full=Putative unch...    69   2e-10
tr|A0QTA3|A0QTA3_MYCS2 Tax_Id=246196 SubName: Full=UsfY protein;...    66   1e-09
tr|A1TEB7|A1TEB7_MYCVP Tax_Id=350058 SubName: Full=Putative unch...    57   5e-07
tr|A3PUZ6|A3PUZ6_MYCSJ Tax_Id=164757 SubName: Full=Putative unch...    56   1e-06
tr|B1MBH9|B1MBH9_MYCA9 Tax_Id=561007 SubName: Full=Putative unch...    52   2e-05
tr|Q1BDL1|Q1BDL1_MYCSS Tax_Id=164756 SubName: Full=Putative unch...    51   5e-05
tr|A1UBD0|A1UBD0_MYCSK Tax_Id=189918 SubName: Full=Putative unch...    51   5e-05
tr|A4T6K2|A4T6K2_MYCGI Tax_Id=350054 SubName: Full=Putative unch...    50   6e-05
tr|A0R0J3|A0R0J3_MYCS2 Tax_Id=246196 SubName: Full=UsfY protein;...    50   6e-05
tr|Q744F8|Q744F8_MYCPA Tax_Id=1770 SubName: Full=Putative unchar...    41   0.049
tr|A0Q9Y4|A0Q9Y4_MYCA1 Tax_Id=243243 SubName: Full=Putative unch...    40   0.083
tr|Q5YW94|Q5YW94_NOCFA Tax_Id=37329 SubName: Full=Putative uncha...    38   0.41 
tr|A3PC80|A3PC80_PROM0 Tax_Id=167546 SubName: Full=Putative tran...    35   2.7  
tr|A8G448|A8G448_PROM2 Tax_Id=93060 SubName: Full=Putative trans...    33   7.8  

>tr|B2HDY7|B2HDY7_MYCMM Tax_Id=216594 (usfY)SubName:
           Full=Mycobacterial conserved protein,
           UsfY;[Mycobacterium marinum]
          Length = 103

 Score =  153 bits (387), Expect = 5e-36
 Identities = 75/103 (72%), Positives = 75/103 (72%)

Query: 1   MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
           MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGY                FGTGHHSEGMAS
Sbjct: 1   MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYLLVVAGVIGGVGSLAAFGTGHHSEGMAS 60

Query: 61  XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQRLAS 103
                       IWLAFEHRRVRRIADRWYSEHPEVRRQRLAS
Sbjct: 61  GVVALTVAVVGLIWLAFEHRRVRRIADRWYSEHPEVRRQRLAS 103


>tr|A0PRK2|A0PRK2_MYCUA Tax_Id=362242 (usfY)SubName:
           Full=Mycobacterial conserved protein,
           UsfY;[Mycobacterium ulcerans]
          Length = 103

 Score =  150 bits (380), Expect = 3e-35
 Identities = 74/103 (71%), Positives = 74/103 (71%)

Query: 1   MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
           MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGY                FGTGHHSEGMAS
Sbjct: 1   MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYLLVVAGVIGGVGSLAAFGTGHHSEGMAS 60

Query: 61  XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQRLAS 103
                       IWLAFEHRRVRRIADRWYS HPEVRRQRLAS
Sbjct: 61  GVVALTVAVVGLIWLAFEHRRVRRIADRWYSGHPEVRRQRLAS 103


>tr|Q7D5S0|Q7D5S0_MYCTU Tax_Id=1773 (usfY)SubName: Full=Putative
           uncharacterized protein; SubName: Full=Putative
           uncharacterized protein usfY;[Mycobacterium
           tuberculosis]
          Length = 137

 Score =  141 bits (355), Expect = 3e-32
 Identities = 66/102 (64%), Positives = 71/102 (69%)

Query: 1   MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
           MGDTYRDPVDHLRTTRPLAGESLIDV+HWPGY                FGTGHH+EGM  
Sbjct: 35  MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94

Query: 61  XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQRLA 102
                        WLAFEHRR+R+IADRWY+EHPEVRRQRLA
Sbjct: 95  GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLA 136


>tr|P96893|P96893_MYCBO Tax_Id=1765 (usfY)SubName: Full=Putative
           uncharacterized protein usfY; SubName: Full=Putative
           uncharacterized protein Rv3288c;[Mycobacterium bovis]
          Length = 137

 Score =  141 bits (355), Expect = 3e-32
 Identities = 66/102 (64%), Positives = 71/102 (69%)

Query: 1   MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
           MGDTYRDPVDHLRTTRPLAGESLIDV+HWPGY                FGTGHH+EGM  
Sbjct: 35  MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94

Query: 61  XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQRLA 102
                        WLAFEHRR+R+IADRWY+EHPEVRRQRLA
Sbjct: 95  GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLA 136


>tr|C6DL25|C6DL25_MYCTK Tax_Id=478434 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium tuberculosis]
          Length = 137

 Score =  141 bits (355), Expect = 3e-32
 Identities = 66/102 (64%), Positives = 71/102 (69%)

Query: 1   MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
           MGDTYRDPVDHLRTTRPLAGESLIDV+HWPGY                FGTGHH+EGM  
Sbjct: 35  MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94

Query: 61  XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQRLA 102
                        WLAFEHRR+R+IADRWY+EHPEVRRQRLA
Sbjct: 95  GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLA 136


>tr|C1AH62|C1AH62_MYCBT Tax_Id=561275 (usfY)SubName: Full=Putative
           uncharacterized protein usfY;[Mycobacterium bovis]
          Length = 137

 Score =  141 bits (355), Expect = 3e-32
 Identities = 66/102 (64%), Positives = 71/102 (69%)

Query: 1   MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
           MGDTYRDPVDHLRTTRPLAGESLIDV+HWPGY                FGTGHH+EGM  
Sbjct: 35  MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94

Query: 61  XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQRLA 102
                        WLAFEHRR+R+IADRWY+EHPEVRRQRLA
Sbjct: 95  GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLA 136


>tr|A5U7W2|A5U7W2_MYCTA Tax_Id=419947 (usfY)SubName: Full=Putative
           uncharacterized protein usfY;[Mycobacterium
           tuberculosis]
          Length = 137

 Score =  141 bits (355), Expect = 3e-32
 Identities = 66/102 (64%), Positives = 71/102 (69%)

Query: 1   MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
           MGDTYRDPVDHLRTTRPLAGESLIDV+HWPGY                FGTGHH+EGM  
Sbjct: 35  MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94

Query: 61  XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQRLA 102
                        WLAFEHRR+R+IADRWY+EHPEVRRQRLA
Sbjct: 95  GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLA 136


>tr|A1KNU0|A1KNU0_MYCBP Tax_Id=410289 (usfY)SubName: Full=Putative
           uncharacterized protein usfY;[Mycobacterium bovis]
          Length = 137

 Score =  141 bits (355), Expect = 3e-32
 Identities = 66/102 (64%), Positives = 71/102 (69%)

Query: 1   MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
           MGDTYRDPVDHLRTTRPLAGESLIDV+HWPGY                FGTGHH+EGM  
Sbjct: 35  MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94

Query: 61  XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQRLA 102
                        WLAFEHRR+R+IADRWY+EHPEVRRQRLA
Sbjct: 95  GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLA 136


>tr|Q7BW14|Q7BW14_MYCTU Tax_Id=1773 (usfY)SubName:
           Full=UsfY;[Mycobacterium tuberculosis]
          Length = 103

 Score =  141 bits (355), Expect = 3e-32
 Identities = 66/102 (64%), Positives = 71/102 (69%)

Query: 1   MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
           MGDTYRDPVDHLRTTRPLAGESLIDV+HWPGY                FGTGHH+EGM  
Sbjct: 1   MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 60

Query: 61  XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQRLA 102
                        WLAFEHRR+R+IADRWY+EHPEVRRQRLA
Sbjct: 61  GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLA 102


>tr|A5WSK3|A5WSK3_MYCTF Tax_Id=336982 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium tuberculosis]
          Length = 137

 Score =  141 bits (355), Expect = 3e-32
 Identities = 66/102 (64%), Positives = 71/102 (69%)

Query: 1   MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
           MGDTYRDPVDHLRTTRPLAGESLIDV+HWPGY                FGTGHH+EGM  
Sbjct: 35  MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94

Query: 61  XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQRLA 102
                        WLAFEHRR+R+IADRWY+EHPEVRRQRLA
Sbjct: 95  GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLA 136


>tr|A4KLI4|A4KLI4_MYCTU Tax_Id=395095 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium tuberculosis str.
           Haarlem]
          Length = 137

 Score =  141 bits (355), Expect = 3e-32
 Identities = 66/102 (64%), Positives = 71/102 (69%)

Query: 1   MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
           MGDTYRDPVDHLRTTRPLAGESLIDV+HWPGY                FGTGHH+EGM  
Sbjct: 35  MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 94

Query: 61  XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQRLA 102
                        WLAFEHRR+R+IADRWY+EHPEVRRQRLA
Sbjct: 95  GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLA 136


>tr|A2VP84|A2VP84_MYCTU Tax_Id=348776 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium tuberculosis C]
          Length = 103

 Score =  141 bits (355), Expect = 3e-32
 Identities = 66/102 (64%), Positives = 71/102 (69%)

Query: 1   MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
           MGDTYRDPVDHLRTTRPLAGESLIDV+HWPGY                FGTGHH+EGM  
Sbjct: 1   MGDTYRDPVDHLRTTRPLAGESLIDVVHWPGYLLIVAGVVGGVGALAAFGTGHHAEGMTF 60

Query: 61  XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQRLA 102
                        WLAFEHRR+R+IADRWY+EHPEVRRQRLA
Sbjct: 61  GVVAIVVTVVGLAWLAFEHRRIRKIADRWYTEHPEVRRQRLA 102


>tr|Q73UG0|Q73UG0_MYCPA Tax_Id=1770 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium paratuberculosis]
          Length = 103

 Score =  130 bits (328), Expect = 4e-29
 Identities = 62/103 (60%), Positives = 67/103 (65%)

Query: 1   MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
           MGDT+ DPVDHLRTTRPLAGESLIDVLHWPGY                F TGHH EGM +
Sbjct: 1   MGDTFHDPVDHLRTTRPLAGESLIDVLHWPGYLLVVAGVVGACGSLAAFATGHHHEGMTA 60

Query: 61  XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQRLAS 103
                       +WLA EHRR+RRIADRWY+EHPEV RQ  AS
Sbjct: 61  GVTAVIAAVLGLVWLAVEHRRIRRIADRWYAEHPEVHRQWPAS 103


>tr|A0QKG3|A0QKG3_MYCA1 Tax_Id=243243 SubName: Full=UsfY
           protein;[Mycobacterium avium]
          Length = 103

 Score =  130 bits (328), Expect = 4e-29
 Identities = 62/103 (60%), Positives = 67/103 (65%)

Query: 1   MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
           MGDT+ DPVDHLRTTRPLAGESLIDVLHWPGY                F TGHH EGM +
Sbjct: 1   MGDTFHDPVDHLRTTRPLAGESLIDVLHWPGYLLVVAGVVGACGSLAAFATGHHHEGMTA 60

Query: 61  XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQRLAS 103
                       +WLA EHRR+RRIADRWY+EHPEV RQ  AS
Sbjct: 61  GVTAVIAAVLGLVWLAVEHRRIRRIADRWYAEHPEVHRQWPAS 103


>tr|A0QTC5|A0QTC5_MYCS2 Tax_Id=246196 SubName: Full=UsfY
          protein;[Mycobacterium smegmatis]
          Length = 102

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 40/94 (42%), Positives = 47/94 (50%)

Query: 6  RDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMASXXXXX 65
          +DPVDH RTTRP AGES+ D +  P                  F T HH  G+       
Sbjct: 5  KDPVDHARTTRPHAGESMKDNMIMPALIVIGLALVTFVGSLAAFATKHHDVGLTLVSLAA 64

Query: 66 XXXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQ 99
                 +WLA EH RVRRI +RWY+EHP V RQ
Sbjct: 65 AGFVVGALWLALEHLRVRRIEERWYAEHPGVMRQ 98


>tr|A4TF08|A4TF08_MYCGI Tax_Id=350054 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium gilvum]
          Length = 102

 Score = 75.1 bits (183), Expect = 2e-12
 Identities = 39/94 (41%), Positives = 46/94 (48%)

Query: 7   DPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMASXXXXXX 66
           DPVDH+RTTRP AGES+ D    PG                 F T HH  G+        
Sbjct: 6   DPVDHVRTTRPHAGESMKDNKIMPGLVVIGLSLVSFVAMLSAFATSHHDVGVMLGAIAAA 65

Query: 67  XXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQR 100
                  WL  EH+RVRR+ +RWY+EHP   RQR
Sbjct: 66  GFVLGGGWLFIEHQRVRRLEERWYAEHPGAWRQR 99


>tr|Q1BCJ7|Q1BCJ7_MYCSS Tax_Id=164756 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium sp.]
          Length = 102

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 36/94 (38%), Positives = 46/94 (48%)

Query: 7   DPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMASXXXXXX 66
           DPVDH RTTRP AGE++ D  + P                    T +H+ G+        
Sbjct: 6   DPVDHARTTRPHAGETMKDTKNMPALVLLGFALVTFVAALAAHATANHTVGVIVGCISAV 65

Query: 67  XXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQR 100
                  W   EHRRV+ I +RWY+EHPEV+RQR
Sbjct: 66  LFVVAGAWFLIEHRRVKGIEERWYAEHPEVQRQR 99


>tr|A3PW29|A3PW29_MYCSJ Tax_Id=164757 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium sp.]
          Length = 110

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 36/94 (38%), Positives = 46/94 (48%)

Query: 7   DPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMASXXXXXX 66
           DPVDH RTTRP AGE++ D  + P                    T +H+ G+        
Sbjct: 14  DPVDHARTTRPHAGETMKDTKNMPALVLLGFALVTFVAALAAHATANHTVGVIVGCISAV 73

Query: 67  XXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQR 100
                  W   EHRRV+ I +RWY+EHPEV+RQR
Sbjct: 74  LFVVAGAWFLIEHRRVKGIEERWYAEHPEVQRQR 107


>tr|A1UCE6|A1UCE6_MYCSK Tax_Id=189918 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium sp.]
          Length = 102

 Score = 72.8 bits (177), Expect = 1e-11
 Identities = 36/94 (38%), Positives = 46/94 (48%)

Query: 7   DPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMASXXXXXX 66
           DPVDH RTTRP AGE++ D  + P                    T +H+ G+        
Sbjct: 6   DPVDHARTTRPHAGETMKDTKNMPALVLLGFALVTFVAALAAHATANHTVGVIVGCISAV 65

Query: 67  XXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQR 100
                  W   EHRRV+ I +RWY+EHPEV+RQR
Sbjct: 66  LFVVAGAWFLIEHRRVKGIEERWYAEHPEVQRQR 99


>tr|A0QTB1|A0QTB1_MYCS2 Tax_Id=246196 SubName: Full=UsfY
           protein;[Mycobacterium smegmatis]
          Length = 101

 Score = 70.1 bits (170), Expect = 7e-11
 Identities = 37/100 (37%), Positives = 45/100 (45%)

Query: 1   MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
           MGDT +DPVDH RTTRP AGE+L D  + P                  F T H + G+  
Sbjct: 1   MGDTAKDPVDHARTTRPHAGETLKDTANIPALILLFLGGVSFVSCLFAFSTSHETVGIVL 60

Query: 61  XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQR 100
                        WL  EHRRV     +W + HPEV + R
Sbjct: 61  AVVAALLFVVSGAWLVVEHRRVTHKERQWNAAHPEVHQSR 100


>tr|A1T5N4|A1T5N4_MYCVP Tax_Id=350058 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium vanbaalenii]
          Length = 102

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 37/94 (39%), Positives = 44/94 (46%)

Query: 7   DPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMASXXXXXX 66
           DPVDH+RTTRP AGES+ D    PG                 F T +H  G+        
Sbjct: 6   DPVDHVRTTRPHAGESMKDNKIMPGLVVIGLALVSFVSALAAFATVNHDVGVMLGALGLA 65

Query: 67  XXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQR 100
                  WL  EH RVR + D WY++HP V RQR
Sbjct: 66  GFVVGGGWLMIEHHRVRHLEDVWYAQHPGVPRQR 99


>tr|A0QTA3|A0QTA3_MYCS2 Tax_Id=246196 SubName: Full=UsfY
          protein;[Mycobacterium smegmatis]
          Length = 99

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 35/93 (37%), Positives = 43/93 (46%)

Query: 7  DPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMASXXXXXX 66
          +PVDH RTTRP AGE++ D  + PG                 F T H S G         
Sbjct: 4  EPVDHARTTRPHAGETMKDARNLPGLAIIGVSLVVFVSSLVAFATDHMSIGGMLVGLAAV 63

Query: 67 XXXXXXIWLAFEHRRVRRIADRWYSEHPEVRRQ 99
                 WLA EH RVR+  +RWY+ HP + RQ
Sbjct: 64 GAVVGGAWLATEHYRVRKNEERWYANHPGIMRQ 96


>tr|A1TEB7|A1TEB7_MYCVP Tax_Id=350058 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium vanbaalenii]
          Length = 103

 Score = 57.4 bits (137), Expect = 5e-07
 Identities = 32/95 (33%), Positives = 42/95 (44%)

Query: 1  MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
          M DT RDPVDH RT R  AGE++   ++ PG                 F  G  S G+A+
Sbjct: 1  MPDTSRDPVDHARTYRQHAGETMKAGVNAPGLIAVGIGVLSLVIGLFSFANGSRSAGVAA 60

Query: 61 XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPE 95
                       WLA  H +V++    W+ EHPE
Sbjct: 61 VVVAVLLVGGGLAWLARAHHKVQKKQQDWHREHPE 95


>tr|A3PUZ6|A3PUZ6_MYCSJ Tax_Id=164757 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium sp.]
          Length = 102

 Score = 56.2 bits (134), Expect = 1e-06
 Identities = 37/99 (37%), Positives = 44/99 (44%), Gaps = 4/99 (4%)

Query: 1  MGDTYRDPVDHLRTTRPLAGESLIDVLHWPG--YXXXXXXXXXXXXXXXXFGTGHHSEGM 58
          M   + DPVDH RT +P AGES+ID L +PG                   +G GH    +
Sbjct: 1  MKGAHHDPVDHARTYQPRAGESMIDTLWFPGLLLIALGVIGLAAIVASAAYGEGHLVLPL 60

Query: 59 ASXXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVR 97
          A             I  A EHRRV RI   W SEHP+ R
Sbjct: 61 ALVTGAIVTAGGGLI--ALEHRRVLRIERLWQSEHPDTR 97


>tr|B1MBH9|B1MBH9_MYCA9 Tax_Id=561007 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium abscessus]
          Length = 99

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 30/93 (32%), Positives = 38/93 (40%)

Query: 1  MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
          M D   DPVDH RT RP AGESL D + WPG                      +   + +
Sbjct: 1  MHDDGIDPVDHARTFRPHAGESLKDRVAWPGLAFIALGVLSVVLGLAAAAYMFYGWTLVA 60

Query: 61 XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEH 93
                      +W+  E RRVRR+   W+ EH
Sbjct: 61 GIAALVFFFLGWLWMHVERRRVRRMEAEWHQEH 93


>tr|Q1BDL1|Q1BDL1_MYCSS Tax_Id=164756 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium sp.]
          Length = 102

 Score = 50.8 bits (120), Expect = 5e-05
 Identities = 35/99 (35%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 1  MGDTYRDPVDHLRTTRPLAGESLIDVLHWPG--YXXXXXXXXXXXXXXXXFGTGHHSEGM 58
          M   + DPVDH RT +P AGES ID L +PG                   +G GH    +
Sbjct: 1  MKGAHHDPVDHARTYQPRAGESFIDTLWFPGLLLIALGVIGLAAIVASAAYGEGHLVLPL 60

Query: 59 ASXXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVR 97
          A             I  A EHRRV RI   W S+H + R
Sbjct: 61 ALVTGAIVTAGGGLI--ALEHRRVLRIERLWQSQHRDTR 97


>tr|A1UBD0|A1UBD0_MYCSK Tax_Id=189918 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium sp.]
          Length = 102

 Score = 50.8 bits (120), Expect = 5e-05
 Identities = 35/99 (35%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 1  MGDTYRDPVDHLRTTRPLAGESLIDVLHWPG--YXXXXXXXXXXXXXXXXFGTGHHSEGM 58
          M   + DPVDH RT +P AGES ID L +PG                   +G GH    +
Sbjct: 1  MKGAHHDPVDHARTYQPRAGESFIDTLWFPGLLLIALGVIGLAAIVASAAYGEGHLVLPL 60

Query: 59 ASXXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPEVR 97
          A             I  A EHRRV RI   W S+H + R
Sbjct: 61 ALVTGAIVTAGGGLI--ALEHRRVLRIERLWQSQHRDTR 97


>tr|A4T6K2|A4T6K2_MYCGI Tax_Id=350054 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium gilvum]
          Length = 103

 Score = 50.4 bits (119), Expect = 6e-05
 Identities = 28/95 (29%), Positives = 40/95 (42%)

Query: 1  MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
          M DT +DPVDH RTTR  AGE++   ++ PG                 F       G+  
Sbjct: 1  MPDTSQDPVDHARTTRQHAGETMKAGVNAPGLIAVGLGVLSLVVGLFSFANSSTITGIVG 60

Query: 61 XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSEHPE 95
                       WLA  HR+V+   + W+ +HP+
Sbjct: 61 VVLAVLLIAGGLAWLARTHRKVQLQQEEWHRKHPQ 95


>tr|A0R0J3|A0R0J3_MYCS2 Tax_Id=246196 SubName: Full=UsfY
          protein;[Mycobacterium smegmatis]
          Length = 100

 Score = 50.4 bits (119), Expect = 6e-05
 Identities = 27/92 (29%), Positives = 37/92 (40%)

Query: 1  MGDTYRDPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMAS 60
          MGDT  DP DH RT +P AG ++ D  +WPG                      +      
Sbjct: 1  MGDTNLDPADHFRTAQPHAGLAVKDNFYWPGLILLVVAASGLTGVVAATAYRRYEWVSTM 60

Query: 61 XXXXXXXXXXXXIWLAFEHRRVRRIADRWYSE 92
                      +W   E+RRVRRI D+W ++
Sbjct: 61 VLIAVLGAIAGTLWFVMENRRVRRIEDQWTAD 92


>tr|Q744F8|Q744F8_MYCPA Tax_Id=1770 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium paratuberculosis]
          Length = 114

 Score = 40.8 bits (94), Expect = 0.049
 Identities = 25/89 (28%), Positives = 33/89 (37%)

Query: 7   DPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMASXXXXXX 66
           DPVDH RT R  AGE+     + PG                    GH + G  +      
Sbjct: 18  DPVDHARTFRQHAGETFTYGANVPGLAGSAVAVVAMTVGVFAVAAGHLTGGAIALIVAAV 77

Query: 67  XXXXXXIWLAFEHRRVRRIADRWYSEHPE 95
                  WL   HR+VR    RW++ H +
Sbjct: 78  VGAVSAGWLLRTHRKVREAELRWHAAHSD 106


>tr|A0Q9Y4|A0Q9Y4_MYCA1 Tax_Id=243243 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium avium]
          Length = 103

 Score = 40.0 bits (92), Expect = 0.083
 Identities = 25/89 (28%), Positives = 33/89 (37%)

Query: 7  DPVDHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMASXXXXXX 66
          DPVDH RT R  AGE+     + PG                    GH + G  +      
Sbjct: 7  DPVDHARTFRQHAGETFTYGANVPGLAGSAVAVVAMTVGVFAVAAGHLTGGAIALIVAAV 66

Query: 67 XXXXXXIWLAFEHRRVRRIADRWYSEHPE 95
                 WL   HR+VR    RW++ H +
Sbjct: 67 VGAVSAGWLLRTHRKVRDAELRWHAAHSD 95


>tr|Q5YW94|Q5YW94_NOCFA Tax_Id=37329 SubName: Full=Putative
          uncharacterized protein;[Nocardia farcinica]
          Length = 103

 Score = 37.7 bits (86), Expect = 0.41
 Identities = 21/79 (26%), Positives = 31/79 (39%)

Query: 10 DHLRTTRPLAGESLIDVLHWPGYXXXXXXXXXXXXXXXXFGTGHHSEGMASXXXXXXXXX 69
          DH RT R  AGE++ D  +WPG                  G G     +           
Sbjct: 16 DHARTMRSHAGEAIEDTRNWPGMILVGLGIVTVGLTLVAAGYGFEGWAIIGGIAAALFLI 75

Query: 70 XXXIWLAFEHRRVRRIADR 88
             + +  EHRRV++++DR
Sbjct: 76 VGAVLILAEHRRVQKLSDR 94


>tr|A3PC80|A3PC80_PROM0 Tax_Id=167546 SubName: Full=Putative
           transcripton factor;[Prochlorococcus marinus]
          Length = 257

 Score = 35.0 bits (79), Expect = 2.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)

Query: 74  WLAFEHRRVRRIADRWYSEHPEVRRQ 99
           W+ FE++ +R ++ RWYSE  E+R +
Sbjct: 228 WIEFENKELRHVSHRWYSESGEIREE 253


>tr|A8G448|A8G448_PROM2 Tax_Id=93060 SubName: Full=Putative
           transcripton factor;[Prochlorococcus marinus]
          Length = 243

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 74  WLAFEHRRVRRIADRWYSEHPEVRRQ 99
           W+ FE + +R ++ RWYSE  E+R +
Sbjct: 214 WIEFEKKGLRNVSHRWYSESGEIREE 239


  Database: Amellifera_nr
    Posted date:  Feb 5, 2010  5:10 AM
  Number of letters in database: 3,846,993,858
  Number of sequences in database:  11,275,203
  
Lambda     K      H
   0.324    0.138    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11275203
Number of Hits to DB: 619,776,266
Number of extensions: 15078456
Number of successful extensions: 28208
Number of sequences better than 10.0: 34
Number of HSP's gapped: 28173
Number of HSP's successfully gapped: 34
Length of query: 103
Length of database: 3,846,993,858
Length adjustment: 72
Effective length of query: 31
Effective length of database: 3,035,179,242
Effective search space: 94090556502
Effective search space used: 94090556502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 75 (33.5 bits)