BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_1248 (262 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HDZ0|B2HDZ0_MYCMM Tax_Id=216594 (sigF)SubName: Full=Alterna... 396 e-108 tr|A0PRJ9|A0PRJ9_MYCUA Tax_Id=362242 (sigF)SubName: Full=Alterna... 396 e-108 tr|Q73UG2|Q73UG2_MYCPA Tax_Id=1770 (sigF)SubName: Full=SigF_2;[M... 357 7e-97 tr|Q7D5S2|Q7D5S2_MYCTU Tax_Id=1773 (sigF)SubName: Full=ALTERNATE... 351 5e-95 tr|P96891|P96891_MYCBO Tax_Id=1765 (sigF)SubName: Full=PROBABLE ... 351 5e-95 tr|C6DL23|C6DL23_MYCTK Tax_Id=478434 SubName: Full=RNA polymeras... 351 5e-95 tr|C1AH60|C1AH60_MYCBT Tax_Id=561275 (sigF)SubName: Full=RNA pol... 351 5e-95 tr|A5U7W0|A5U7W0_MYCTA Tax_Id=419947 (sigF)SubName: Full=Sigma f... 351 5e-95 tr|A1KNT8|A1KNT8_MYCBP Tax_Id=410289 (sigF)SubName: Full=Probabl... 351 5e-95 tr|Q50547|Q50547_MYCTU Tax_Id=1773 (sigF)SubName: Full=Stress re... 351 5e-95 tr|A5WSK1|A5WSK1_MYCTF Tax_Id=336982 SubName: Full=Alternate RNA... 351 5e-95 tr|A4KLI2|A4KLI2_MYCTU Tax_Id=395095 SubName: Full=Alternate RNA... 351 5e-95 tr|A2VP82|A2VP82_MYCTU Tax_Id=348776 SubName: Full=Alternate RNA... 351 5e-95 tr|A4TF18|A4TF18_MYCGI Tax_Id=350054 SubName: Full=RNA polymeras... 327 1e-87 tr|Q1BCJ1|Q1BCJ1_MYCSS Tax_Id=164756 SubName: Full=RNA polymeras... 322 2e-86 tr|A3PW35|A3PW35_MYCSJ Tax_Id=164757 SubName: Full=RNA polymeras... 322 2e-86 tr|A1UCF2|A1UCF2_MYCSK Tax_Id=189918 SubName: Full=RNA polymeras... 322 2e-86 tr|A1T5N9|A1T5N9_MYCVP Tax_Id=350058 SubName: Full=RNA polymeras... 321 6e-86 tr|A0QKG0|A0QKG0_MYCA1 Tax_Id=243243 SubName: Full=RNA polymeras... 320 1e-85 tr|A0QTD8|A0QTD8_MYCS2 Tax_Id=246196 SubName: Full=RNA polymeras... 312 3e-83 tr|Q8GR88|Q8GR88_MYCSM Tax_Id=1772 (sigF)SubName: Full=Alternati... 312 3e-83 tr|C1B084|C1B084_RHOOB Tax_Id=632772 (sigF)SubName: Full=RNA pol... 260 9e-68 tr|Q0SEW1|Q0SEW1_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,... 258 4e-67 tr|C3JIJ6|C3JIJ6_RHOER Tax_Id=596309 SubName: Full=RNA polymeras... 242 3e-62 tr|C0ZUP1|C0ZUP1_RHOE4 Tax_Id=234621 (sigF)SubName: Full=RNA pol... 241 5e-62 tr|A4TCX2|A4TCX2_MYCGI Tax_Id=350054 SubName: Full=RNA polymeras... 234 9e-60 tr|A1T842|A1T842_MYCVP Tax_Id=350058 SubName: Full=RNA polymeras... 233 2e-59 tr|C7MUM0|C7MUM0_SACVD Tax_Id=471857 SubName: Full=RNA polymeras... 230 1e-58 tr|Q1B7Y0|Q1B7Y0_MYCSS Tax_Id=164756 SubName: Full=RNA polymeras... 229 2e-58 tr|A3Q0M9|A3Q0M9_MYCSJ Tax_Id=164757 SubName: Full=RNA polymeras... 229 2e-58 tr|A1UH27|A1UH27_MYCSK Tax_Id=189918 SubName: Full=RNA polymeras... 229 2e-58 tr|C7MSF3|C7MSF3_SACVD Tax_Id=471857 SubName: Full=RNA polymeras... 224 6e-57 tr|A4TCX3|A4TCX3_MYCGI Tax_Id=350054 SubName: Full=RNA polymeras... 224 1e-56 tr|C6W9Z3|C6W9Z3_ACTMD Tax_Id=446462 SubName: Full=RNA polymeras... 221 8e-56 tr|Q73ZX7|Q73ZX7_MYCPA Tax_Id=1770 (sigF)SubName: Full=SigF_1;[M... 218 5e-55 tr|Q5YTN8|Q5YTN8_NOCFA Tax_Id=37329 SubName: Full=Putative sigma... 217 9e-55 tr|A0QGW1|A0QGW1_MYCA1 Tax_Id=243243 SubName: Full=RNA polymeras... 217 1e-54 tr|B1MBH1|B1MBH1_MYCA9 Tax_Id=561007 SubName: Full=Alternative s... 214 1e-53 tr|D0L5V1|D0L5V1_GORB4 Tax_Id=526226 SubName: Full=RNA polymeras... 213 2e-53 tr|C1BBL7|C1BBL7_RHOOB Tax_Id=632772 SubName: Full=RNA polymeras... 213 2e-53 tr|C0ZT10|C0ZT10_RHOE4 Tax_Id=234621 SubName: Full=RNA polymeras... 213 2e-53 tr|C3JPK6|C3JPK6_RHOER Tax_Id=596309 SubName: Full=RNA polymeras... 211 7e-53 tr|Q0S7H3|Q0S7H3_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,... 209 3e-52 tr|Q0SKK2|Q0SKK2_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,... 207 9e-52 tr|C1ASL4|C1ASL4_RHOOB Tax_Id=632772 SubName: Full=RNA polymeras... 203 1e-50 tr|A4FLE7|A4FLE7_SACEN Tax_Id=405948 (sig1)SubName: Full=RNA pol... 200 1e-49 tr|Q75NJ0|Q75NJ0_SACER Tax_Id=1836 (sigH)SubName: Full=RNA polym... 200 1e-49 tr|Q5Z3J2|Q5Z3J2_NOCFA Tax_Id=37329 SubName: Full=Putative sigma... 198 4e-49 tr|C0UB07|C0UB07_9ACTO Tax_Id=526225 RecName: Full=RNA polymeras... 197 1e-48 tr|Q5YW83|Q5YW83_NOCFA Tax_Id=37329 SubName: Full=Putative sigma... 197 1e-48 >tr|B2HDZ0|B2HDZ0_MYCMM Tax_Id=216594 (sigF)SubName: Full=Alternate RNA polymerase sigma factor SigF;[Mycobacterium marinum] Length = 262 Score = 396 bits (1018), Expect = e-108 Identities = 211/262 (80%), Positives = 212/262 (80%) Query: 1 VTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60 +TSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG Sbjct: 1 MTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60 Query: 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL Sbjct: 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 Query: 121 KELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXX 180 KELHLRLGAATAELSQRLGRAP MDRAEVVEGLVAGSSYNTL Sbjct: 121 KELHLRLGAATAELSQRLGRAPTATELAAELEMDRAEVVEGLVAGSSYNTLSIDSGSGSE 180 Query: 181 XXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVG 240 ARAIADTLGDMDAGLDRIED TVLVLRFFDSMTQTQIAERVG Sbjct: 181 DDDARAIADTLGDMDAGLDRIEDRESLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 240 Query: 241 ISQMHVXXXXXXXXXXXXDQLE 262 ISQMHV DQLE Sbjct: 241 ISQMHVSRLLAKSLARLRDQLE 262 >tr|A0PRJ9|A0PRJ9_MYCUA Tax_Id=362242 (sigF)SubName: Full=Alternate RNA polymerase sigma factor SigF;[Mycobacterium ulcerans] Length = 262 Score = 396 bits (1018), Expect = e-108 Identities = 211/262 (80%), Positives = 212/262 (80%) Query: 1 VTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60 +TSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG Sbjct: 1 MTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60 Query: 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL Sbjct: 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 Query: 121 KELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXX 180 KELHLRLGAATAELSQRLGRAP MDRAEVVEGLVAGSSYNTL Sbjct: 121 KELHLRLGAATAELSQRLGRAPTATELAAELEMDRAEVVEGLVAGSSYNTLSIDSGSGSE 180 Query: 181 XXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVG 240 ARAIADTLGDMDAGLDRIED TVLVLRFFDSMTQTQIAERVG Sbjct: 181 DDDARAIADTLGDMDAGLDRIEDRESLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 240 Query: 241 ISQMHVXXXXXXXXXXXXDQLE 262 ISQMHV DQLE Sbjct: 241 ISQMHVSRLLAKSLARLRDQLE 262 >tr|Q73UG2|Q73UG2_MYCPA Tax_Id=1770 (sigF)SubName: Full=SigF_2;[Mycobacterium paratuberculosis] Length = 262 Score = 357 bits (916), Expect = 7e-97 Identities = 190/262 (72%), Positives = 199/262 (75%) Query: 1 VTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60 +T+R AGGS SRPNEYADVP+MFRELAT + DS FQR RD IVERCLPLADHIARRFEG Sbjct: 1 MTARAAGGSVSRPNEYADVPDMFRELATAEPDSMEFQRQRDKIVERCLPLADHIARRFEG 60 Query: 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 RGEPRDDLVQVARVGLVNAVVRFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL Sbjct: 61 RGEPRDDLVQVARVGLVNAVVRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 Query: 121 KELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXX 180 KELHLRLG ATA+LSQRLGRAP MDR EVVEGLVAGSSYNTL Sbjct: 121 KELHLRLGTATADLSQRLGRAPTATELAAELEMDREEVVEGLVAGSSYNTLSIDSGGGSE 180 Query: 181 XXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVG 240 RAIADTLGD+D GLDRIED TVLVLRFF+SMTQTQIAERVG Sbjct: 181 EEEVRAIADTLGDVDTGLDRIEDQESLRPLLEALPERERTVLVLRFFESMTQTQIAERVG 240 Query: 241 ISQMHVXXXXXXXXXXXXDQLE 262 ISQMHV DQL+ Sbjct: 241 ISQMHVSRLLAKSLTRLRDQLQ 262 >tr|Q7D5S2|Q7D5S2_MYCTU Tax_Id=1773 (sigF)SubName: Full=ALTERNATE RNA POLYMERASE SIGMA FACTOR SIGF; SubName: Full=Stress response/stationary phase sigma factor SigF;[Mycobacterium tuberculosis] Length = 261 Score = 351 bits (900), Expect = 5e-95 Identities = 187/262 (71%), Positives = 200/262 (76%), Gaps = 1/262 (0%) Query: 1 VTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60 +T+R AGGS+SR NEYADVPEMFREL A SP FQRHRD IV+RCLPLADHIARRFEG Sbjct: 1 MTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60 Query: 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 RGEPRDDL+QVARVGLVNA VRFDV+TGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL Sbjct: 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 Query: 121 KELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXX 180 KELHLRLG ATA+LSQRLGRAP MDRAEV+EGL+AGSSY+TL Sbjct: 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTL-SIDSGGGS 179 Query: 181 XXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVG 240 ARAI DTLGD+DAGLD+IE+ TVLVLRFFDSMTQTQIAERVG Sbjct: 180 DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239 Query: 241 ISQMHVXXXXXXXXXXXXDQLE 262 ISQMHV DQLE Sbjct: 240 ISQMHVSRLLAKSLARLRDQLE 261 >tr|P96891|P96891_MYCBO Tax_Id=1765 (sigF)SubName: Full=PROBABLE RNA POLYMERASE SIGMA FACTOR SIGF; SubName: Full=Sigma factor SigF;[Mycobacterium bovis] Length = 261 Score = 351 bits (900), Expect = 5e-95 Identities = 187/262 (71%), Positives = 200/262 (76%), Gaps = 1/262 (0%) Query: 1 VTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60 +T+R AGGS+SR NEYADVPEMFREL A SP FQRHRD IV+RCLPLADHIARRFEG Sbjct: 1 MTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60 Query: 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 RGEPRDDL+QVARVGLVNA VRFDV+TGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL Sbjct: 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 Query: 121 KELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXX 180 KELHLRLG ATA+LSQRLGRAP MDRAEV+EGL+AGSSY+TL Sbjct: 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTL-SIDSGGGS 179 Query: 181 XXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVG 240 ARAI DTLGD+DAGLD+IE+ TVLVLRFFDSMTQTQIAERVG Sbjct: 180 DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239 Query: 241 ISQMHVXXXXXXXXXXXXDQLE 262 ISQMHV DQLE Sbjct: 240 ISQMHVSRLLAKSLARLRDQLE 261 >tr|C6DL23|C6DL23_MYCTK Tax_Id=478434 SubName: Full=RNA polymerase sigma factor sigF;[Mycobacterium tuberculosis] Length = 261 Score = 351 bits (900), Expect = 5e-95 Identities = 187/262 (71%), Positives = 200/262 (76%), Gaps = 1/262 (0%) Query: 1 VTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60 +T+R AGGS+SR NEYADVPEMFREL A SP FQRHRD IV+RCLPLADHIARRFEG Sbjct: 1 MTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60 Query: 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 RGEPRDDL+QVARVGLVNA VRFDV+TGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL Sbjct: 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 Query: 121 KELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXX 180 KELHLRLG ATA+LSQRLGRAP MDRAEV+EGL+AGSSY+TL Sbjct: 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTL-SIDSGGGS 179 Query: 181 XXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVG 240 ARAI DTLGD+DAGLD+IE+ TVLVLRFFDSMTQTQIAERVG Sbjct: 180 DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239 Query: 241 ISQMHVXXXXXXXXXXXXDQLE 262 ISQMHV DQLE Sbjct: 240 ISQMHVSRLLAKSLARLRDQLE 261 >tr|C1AH60|C1AH60_MYCBT Tax_Id=561275 (sigF)SubName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 261 Score = 351 bits (900), Expect = 5e-95 Identities = 187/262 (71%), Positives = 200/262 (76%), Gaps = 1/262 (0%) Query: 1 VTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60 +T+R AGGS+SR NEYADVPEMFREL A SP FQRHRD IV+RCLPLADHIARRFEG Sbjct: 1 MTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60 Query: 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 RGEPRDDL+QVARVGLVNA VRFDV+TGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL Sbjct: 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 Query: 121 KELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXX 180 KELHLRLG ATA+LSQRLGRAP MDRAEV+EGL+AGSSY+TL Sbjct: 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTL-SIDSGGGS 179 Query: 181 XXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVG 240 ARAI DTLGD+DAGLD+IE+ TVLVLRFFDSMTQTQIAERVG Sbjct: 180 DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239 Query: 241 ISQMHVXXXXXXXXXXXXDQLE 262 ISQMHV DQLE Sbjct: 240 ISQMHVSRLLAKSLARLRDQLE 261 >tr|A5U7W0|A5U7W0_MYCTA Tax_Id=419947 (sigF)SubName: Full=Sigma factor SigF;[Mycobacterium tuberculosis] Length = 261 Score = 351 bits (900), Expect = 5e-95 Identities = 187/262 (71%), Positives = 200/262 (76%), Gaps = 1/262 (0%) Query: 1 VTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60 +T+R AGGS+SR NEYADVPEMFREL A SP FQRHRD IV+RCLPLADHIARRFEG Sbjct: 1 MTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60 Query: 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 RGEPRDDL+QVARVGLVNA VRFDV+TGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL Sbjct: 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 Query: 121 KELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXX 180 KELHLRLG ATA+LSQRLGRAP MDRAEV+EGL+AGSSY+TL Sbjct: 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTL-SIDSGGGS 179 Query: 181 XXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVG 240 ARAI DTLGD+DAGLD+IE+ TVLVLRFFDSMTQTQIAERVG Sbjct: 180 DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239 Query: 241 ISQMHVXXXXXXXXXXXXDQLE 262 ISQMHV DQLE Sbjct: 240 ISQMHVSRLLAKSLARLRDQLE 261 >tr|A1KNT8|A1KNT8_MYCBP Tax_Id=410289 (sigF)SubName: Full=Probable rna polymerase sigma factor sigF;[Mycobacterium bovis] Length = 261 Score = 351 bits (900), Expect = 5e-95 Identities = 187/262 (71%), Positives = 200/262 (76%), Gaps = 1/262 (0%) Query: 1 VTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60 +T+R AGGS+SR NEYADVPEMFREL A SP FQRHRD IV+RCLPLADHIARRFEG Sbjct: 1 MTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60 Query: 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 RGEPRDDL+QVARVGLVNA VRFDV+TGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL Sbjct: 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 Query: 121 KELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXX 180 KELHLRLG ATA+LSQRLGRAP MDRAEV+EGL+AGSSY+TL Sbjct: 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTL-SIDSGGGS 179 Query: 181 XXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVG 240 ARAI DTLGD+DAGLD+IE+ TVLVLRFFDSMTQTQIAERVG Sbjct: 180 DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239 Query: 241 ISQMHVXXXXXXXXXXXXDQLE 262 ISQMHV DQLE Sbjct: 240 ISQMHVSRLLAKSLARLRDQLE 261 >tr|Q50547|Q50547_MYCTU Tax_Id=1773 (sigF)SubName: Full=Stress response/stationary phase sigma factor;[Mycobacterium tuberculosis] Length = 261 Score = 351 bits (900), Expect = 5e-95 Identities = 187/262 (71%), Positives = 200/262 (76%), Gaps = 1/262 (0%) Query: 1 VTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60 +T+R AGGS+SR NEYADVPEMFREL A SP FQRHRD IV+RCLPLADHIARRFEG Sbjct: 1 MTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60 Query: 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 RGEPRDDL+QVARVGLVNA VRFDV+TGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL Sbjct: 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 Query: 121 KELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXX 180 KELHLRLG ATA+LSQRLGRAP MDRAEV+EGL+AGSSY+TL Sbjct: 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTL-SIDSGGGS 179 Query: 181 XXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVG 240 ARAI DTLGD+DAGLD+IE+ TVLVLRFFDSMTQTQIAERVG Sbjct: 180 DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239 Query: 241 ISQMHVXXXXXXXXXXXXDQLE 262 ISQMHV DQLE Sbjct: 240 ISQMHVSRVLAKSLARLRDQLE 261 >tr|A5WSK1|A5WSK1_MYCTF Tax_Id=336982 SubName: Full=Alternate RNA polymerase sigma factor sigF;[Mycobacterium tuberculosis] Length = 261 Score = 351 bits (900), Expect = 5e-95 Identities = 187/262 (71%), Positives = 200/262 (76%), Gaps = 1/262 (0%) Query: 1 VTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60 +T+R AGGS+SR NEYADVPEMFREL A SP FQRHRD IV+RCLPLADHIARRFEG Sbjct: 1 MTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60 Query: 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 RGEPRDDL+QVARVGLVNA VRFDV+TGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL Sbjct: 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 Query: 121 KELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXX 180 KELHLRLG ATA+LSQRLGRAP MDRAEV+EGL+AGSSY+TL Sbjct: 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTL-SIDSGGGS 179 Query: 181 XXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVG 240 ARAI DTLGD+DAGLD+IE+ TVLVLRFFDSMTQTQIAERVG Sbjct: 180 DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239 Query: 241 ISQMHVXXXXXXXXXXXXDQLE 262 ISQMHV DQLE Sbjct: 240 ISQMHVSRLLAKSLARLRDQLE 261 >tr|A4KLI2|A4KLI2_MYCTU Tax_Id=395095 SubName: Full=Alternate RNA polymerase sigma factor sigF;[Mycobacterium tuberculosis str. Haarlem] Length = 261 Score = 351 bits (900), Expect = 5e-95 Identities = 187/262 (71%), Positives = 200/262 (76%), Gaps = 1/262 (0%) Query: 1 VTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60 +T+R AGGS+SR NEYADVPEMFREL A SP FQRHRD IV+RCLPLADHIARRFEG Sbjct: 1 MTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60 Query: 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 RGEPRDDL+QVARVGLVNA VRFDV+TGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL Sbjct: 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 Query: 121 KELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXX 180 KELHLRLG ATA+LSQRLGRAP MDRAEV+EGL+AGSSY+TL Sbjct: 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTL-SIDSGGGS 179 Query: 181 XXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVG 240 ARAI DTLGD+DAGLD+IE+ TVLVLRFFDSMTQTQIAERVG Sbjct: 180 DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239 Query: 241 ISQMHVXXXXXXXXXXXXDQLE 262 ISQMHV DQLE Sbjct: 240 ISQMHVSRLLAKSLARLRDQLE 261 >tr|A2VP82|A2VP82_MYCTU Tax_Id=348776 SubName: Full=Alternate RNA polymerase sigma factor sigF;[Mycobacterium tuberculosis C] Length = 261 Score = 351 bits (900), Expect = 5e-95 Identities = 187/262 (71%), Positives = 200/262 (76%), Gaps = 1/262 (0%) Query: 1 VTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60 +T+R AGGS+SR NEYADVPEMFREL A SP FQRHRD IV+RCLPLADHIARRFEG Sbjct: 1 MTARAAGGSASRANEYADVPEMFRELVGLPAGSPEFQRHRDKIVQRCLPLADHIARRFEG 60 Query: 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 RGEPRDDL+QVARVGLVNA VRFDV+TGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL Sbjct: 61 RGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 Query: 121 KELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXX 180 KELHLRLG ATA+LSQRLGRAP MDRAEV+EGL+AGSSY+TL Sbjct: 121 KELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGSSYHTL-SIDSGGGS 179 Query: 181 XXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVG 240 ARAI DTLGD+DAGLD+IE+ TVLVLRFFDSMTQTQIAERVG Sbjct: 180 DDDARAITDTLGDVDAGLDQIENREVLRPLLEALPERERTVLVLRFFDSMTQTQIAERVG 239 Query: 241 ISQMHVXXXXXXXXXXXXDQLE 262 ISQMHV DQLE Sbjct: 240 ISQMHVSRLLAKSLARLRDQLE 261 >tr|A4TF18|A4TF18_MYCGI Tax_Id=350054 SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family;[Mycobacterium gilvum] Length = 262 Score = 327 bits (837), Expect = 1e-87 Identities = 178/262 (67%), Positives = 191/262 (72%) Query: 1 VTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60 +T ++ GSS +EY+DV +MFRELA + S FQR RD IVERCLPLADHIARRF+G Sbjct: 1 MTRSSSQGSSRSNSEYSDVADMFRELAELEEGSAAFQRQRDRIVERCLPLADHIARRFDG 60 Query: 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 RGEPRDDLVQVARVGLVNAV+RFDV GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL Sbjct: 61 RGEPRDDLVQVARVGLVNAVIRFDVTAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 Query: 121 KELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXX 180 KELHLRLGAATAELSQRLGRAP MDR EVVEGLVAGSSYNTL Sbjct: 121 KELHLRLGAATAELSQRLGRAPTPSELAAELEMDRDEVVEGLVAGSSYNTLSIDSGGGSG 180 Query: 181 XXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVG 240 A AIADTLGD+D LD+IE+ TVLVLRFF+SMTQTQIAERVG Sbjct: 181 NEDAPAIADTLGDVDLTLDQIENREALRPLLAALPERERTVLVLRFFESMTQTQIAERVG 240 Query: 241 ISQMHVXXXXXXXXXXXXDQLE 262 ISQMHV DQLE Sbjct: 241 ISQMHVSRLLAKSLTRLRDQLE 262 >tr|Q1BCJ1|Q1BCJ1_MYCSS Tax_Id=164756 SubName: Full=RNA polymerase, sigma 28 subunit;[Mycobacterium sp.] Length = 263 Score = 322 bits (826), Expect = 2e-86 Identities = 175/263 (66%), Positives = 191/263 (72%), Gaps = 1/263 (0%) Query: 1 VTSRTAGGSSSRPN-EYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFE 59 +T +A GSS R N EY+DV MFREL +P FQR RD IVERCLPLADHIARRF+ Sbjct: 1 MTPSSAQGSSPRQNSEYSDVAPMFRELQGLTPSTPQFQRQRDRIVERCLPLADHIARRFD 60 Query: 60 GRGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR 119 GRGEPRDDLVQVARVGLVNAV+RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR Sbjct: 61 GRGEPRDDLVQVARVGLVNAVIRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR 120 Query: 120 LKELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXX 179 LKELHLRLG+ATAELSQRLGRAP MDR EVVEGLVAGSSYNTL Sbjct: 121 LKELHLRLGSATAELSQRLGRAPTASELAEELGMDRDEVVEGLVAGSSYNTLSIDSGGNS 180 Query: 180 XXXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERV 239 A AIADTLGD+D GLD+IE+ VL+LRFF+++TQTQIAERV Sbjct: 181 GNEDAPAIADTLGDVDLGLDQIENREALRPLLAALPERERMVLLLRFFENLTQTQIAERV 240 Query: 240 GISQMHVXXXXXXXXXXXXDQLE 262 GISQMHV DQL+ Sbjct: 241 GISQMHVSRLLAKSLTRLRDQLQ 263 >tr|A3PW35|A3PW35_MYCSJ Tax_Id=164757 SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family;[Mycobacterium sp.] Length = 263 Score = 322 bits (826), Expect = 2e-86 Identities = 175/263 (66%), Positives = 191/263 (72%), Gaps = 1/263 (0%) Query: 1 VTSRTAGGSSSRPN-EYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFE 59 +T +A GSS R N EY+DV MFREL +P FQR RD IVERCLPLADHIARRF+ Sbjct: 1 MTPSSAQGSSPRQNSEYSDVAPMFRELQGLTPSTPQFQRQRDRIVERCLPLADHIARRFD 60 Query: 60 GRGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR 119 GRGEPRDDLVQVARVGLVNAV+RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR Sbjct: 61 GRGEPRDDLVQVARVGLVNAVIRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR 120 Query: 120 LKELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXX 179 LKELHLRLG+ATAELSQRLGRAP MDR EVVEGLVAGSSYNTL Sbjct: 121 LKELHLRLGSATAELSQRLGRAPTASELAEELGMDRDEVVEGLVAGSSYNTLSIDSGGNS 180 Query: 180 XXXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERV 239 A AIADTLGD+D GLD+IE+ VL+LRFF+++TQTQIAERV Sbjct: 181 GNEDAPAIADTLGDVDLGLDQIENREALRPLLAALPERERMVLLLRFFENLTQTQIAERV 240 Query: 240 GISQMHVXXXXXXXXXXXXDQLE 262 GISQMHV DQL+ Sbjct: 241 GISQMHVSRLLAKSLTRLRDQLQ 263 >tr|A1UCF2|A1UCF2_MYCSK Tax_Id=189918 SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family;[Mycobacterium sp.] Length = 263 Score = 322 bits (826), Expect = 2e-86 Identities = 175/263 (66%), Positives = 191/263 (72%), Gaps = 1/263 (0%) Query: 1 VTSRTAGGSSSRPN-EYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFE 59 +T +A GSS R N EY+DV MFREL +P FQR RD IVERCLPLADHIARRF+ Sbjct: 1 MTPSSAQGSSPRQNSEYSDVAPMFRELQGLTPSTPQFQRQRDRIVERCLPLADHIARRFD 60 Query: 60 GRGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR 119 GRGEPRDDLVQVARVGLVNAV+RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR Sbjct: 61 GRGEPRDDLVQVARVGLVNAVIRFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR 120 Query: 120 LKELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXX 179 LKELHLRLG+ATAELSQRLGRAP MDR EVVEGLVAGSSYNTL Sbjct: 121 LKELHLRLGSATAELSQRLGRAPTASELAEELGMDRDEVVEGLVAGSSYNTLSIDSGGNS 180 Query: 180 XXXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERV 239 A AIADTLGD+D GLD+IE+ VL+LRFF+++TQTQIAERV Sbjct: 181 GNEDAPAIADTLGDVDLGLDQIENREALRPLLAALPERERMVLLLRFFENLTQTQIAERV 240 Query: 240 GISQMHVXXXXXXXXXXXXDQLE 262 GISQMHV DQL+ Sbjct: 241 GISQMHVSRLLAKSLTRLRDQLQ 263 >tr|A1T5N9|A1T5N9_MYCVP Tax_Id=350058 SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family;[Mycobacterium vanbaalenii] Length = 262 Score = 321 bits (822), Expect = 6e-86 Identities = 179/263 (68%), Positives = 191/263 (72%), Gaps = 2/263 (0%) Query: 1 VTSRTAGGSSSRP-NEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFE 59 +T ++ GSSSR +EYADV MFRELA + + FQR RD IVERCLPLADHIARRF+ Sbjct: 1 MTRSSSQGSSSRSGSEYADVAPMFRELAELEEGTAAFQRQRDRIVERCLPLADHIARRFD 60 Query: 60 GRGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR 119 GRGEPRDDLVQVARVGLVNAV+RFDV GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR Sbjct: 61 GRGEPRDDLVQVARVGLVNAVIRFDVNAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRR 120 Query: 120 LKELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXX 179 LKELHLRLGAATAELSQRLGRAP MDR EVVEGLVAGSSYNTL Sbjct: 121 LKELHLRLGAATAELSQRLGRAPTATELAAELEMDRDEVVEGLVAGSSYNTL-SIDSGGS 179 Query: 180 XXXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERV 239 A AIADTLGD+D LD+IE+ TVL LRFF+SMTQTQIAERV Sbjct: 180 GNEDAPAIADTLGDVDLSLDQIENREALRPLLAALPERERTVLALRFFESMTQTQIAERV 239 Query: 240 GISQMHVXXXXXXXXXXXXDQLE 262 GISQMHV DQLE Sbjct: 240 GISQMHVSRLLAKSLARLRDQLE 262 >tr|A0QKG0|A0QKG0_MYCA1 Tax_Id=243243 SubName: Full=RNA polymerase sigma-F factor;[Mycobacterium avium] Length = 241 Score = 320 bits (820), Expect = 1e-85 Identities = 173/241 (71%), Positives = 179/241 (74%) Query: 22 MFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDLVQVARVGLVNAVV 81 MFRELAT + DS FQR RD IVERCLPLADHIARRFEGRGEPRDDLVQVARVGLVNAVV Sbjct: 1 MFRELATAEPDSMEFQRQRDKIVERCLPLADHIARRFEGRGEPRDDLVQVARVGLVNAVV 60 Query: 82 RFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAELSQRLGRA 141 RFDV+ GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG ATA+LSQRLGRA Sbjct: 61 RFDVDAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRA 120 Query: 142 PXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIADTLGDMDAGLDRI 201 MDR EVVEGLVAGSSYNTL RAIADTLGD+D GLDRI Sbjct: 121 HTATELAAELEMDREEVVEGLVAGSSYNTLSIDSGGGSEEEEVRAIADTLGDVDTGLDRI 180 Query: 202 EDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHVXXXXXXXXXXXXDQL 261 ED TVLVLRFF+SMTQTQIAERVGISQMHV DQL Sbjct: 181 EDQESLRPLLEALPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKSLTRLRDQL 240 Query: 262 E 262 + Sbjct: 241 Q 241 >tr|A0QTD8|A0QTD8_MYCS2 Tax_Id=246196 SubName: Full=RNA polymerase sigma-F factor;[Mycobacterium smegmatis] Length = 250 Score = 312 bits (799), Expect = 3e-83 Identities = 170/249 (68%), Positives = 184/249 (73%), Gaps = 1/249 (0%) Query: 14 NEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDLVQVAR 73 +EYADV +MFRELA SP++ R R+ IVERCLPLADHIARRF+GRGEPR+DLVQVAR Sbjct: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 Query: 74 VGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 133 VGLVNAV RFDVE GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE Sbjct: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 Query: 134 LSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIADTLGD 193 LSQRLGRAP MDR EVVEGL+AGSSYNTL A AI DTLGD Sbjct: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTL-SIDSGGGGDEEAPAIVDTLGD 181 Query: 194 MDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHVXXXXXXX 253 +D GLD+I++ TVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 182 LDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKS 241 Query: 254 XXXXXDQLE 262 DQL+ Sbjct: 242 LARLRDQLQ 250 >tr|Q8GR88|Q8GR88_MYCSM Tax_Id=1772 (sigF)SubName: Full=Alternative sigma factor SigF;[Mycobacterium smegmatis] Length = 250 Score = 312 bits (799), Expect = 3e-83 Identities = 170/249 (68%), Positives = 184/249 (73%), Gaps = 1/249 (0%) Query: 14 NEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDLVQVAR 73 +EYADV +MFRELA SP++ R R+ IVERCLPLADHIARRF+GRGEPR+DLVQVAR Sbjct: 3 SEYADVLDMFRELAGTTEGSPSYVRQREKIVERCLPLADHIARRFDGRGEPREDLVQVAR 62 Query: 74 VGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 133 VGLVNAV RFDVE GSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE Sbjct: 63 VGLVNAVNRFDVEAGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 122 Query: 134 LSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIADTLGD 193 LSQRLGRAP MDR EVVEGL+AGSSYNTL A AI DTLGD Sbjct: 123 LSQRLGRAPTASELAHELDMDREEVVEGLIAGSSYNTL-SIDSGGGGDEEAPAIVDTLGD 181 Query: 194 MDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHVXXXXXXX 253 +D GLD+I++ TVLVLRFF+SMTQTQIAERVGISQMHV Sbjct: 182 LDMGLDQIDNRESLRPLLASLPERERTVLVLRFFESMTQTQIAERVGISQMHVSRLLAKS 241 Query: 254 XXXXXDQLE 262 DQL+ Sbjct: 242 LARLRDQLQ 250 >tr|C1B084|C1B084_RHOOB Tax_Id=632772 (sigF)SubName: Full=RNA polymerase sigma factor SigF;[Rhodococcus opacus] Length = 265 Score = 260 bits (665), Expect = 9e-68 Identities = 141/263 (53%), Positives = 174/263 (66%), Gaps = 3/263 (1%) Query: 1 VTSRT-AGGSSSR-PNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRF 58 +TS T +GG ++R P+EY DV +FR++A D D P R RD +V RCLPLA+HIARRF Sbjct: 1 MTSHTHSGGHTARWPDEYQDVTALFRQMAALDEDDPRRSRLRDAVVTRCLPLAEHIARRF 60 Query: 59 EGRGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPR 118 +GRGE DDLVQVAR+GLVN+V RFDVE GSDFVSFAVPTIMGEVRRHFRD W+V+VPR Sbjct: 61 DGRGEAHDDLVQVARLGLVNSVDRFDVERGSDFVSFAVPTIMGEVRRHFRDTGWAVRVPR 120 Query: 119 RLKELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXX 178 R+KELHL L A AELSQ LG AP +++ EV +GL+AG++Y T+ Sbjct: 121 RMKELHLALSQAVAELSQSLGHAPTVSELAEHLDLEQEEVAQGLLAGNAYQTVSVDNTSS 180 Query: 179 XXXXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAER 238 ++ +TLGD DA +D +E+ TVL+LRFF +MTQTQIA+R Sbjct: 181 DRAGEL-SMVETLGDYDAAMDDVENHETLRPLLQSLPERERTVLMLRFFGNMTQTQIADR 239 Query: 239 VGISQMHVXXXXXXXXXXXXDQL 261 VGISQMHV DQL Sbjct: 240 VGISQMHVSRLLAKTLASLRDQL 262 >tr|Q0SEW1|Q0SEW1_RHOSR Tax_Id=101510 SubName: Full=Sigma factor, sigma 70 type, group 3;[Rhodococcus sp.] Length = 265 Score = 258 bits (660), Expect = 4e-67 Identities = 140/263 (53%), Positives = 173/263 (65%), Gaps = 3/263 (1%) Query: 1 VTSRT-AGGSSSR-PNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRF 58 +TS T +GG ++R P+EY DV +F ++A D D P R RD +V RCLPLA+HIARRF Sbjct: 1 MTSHTHSGGHTARWPDEYQDVTALFEQMAALDEDDPRRSRLRDAVVTRCLPLAEHIARRF 60 Query: 59 EGRGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPR 118 +GRGE DDLVQVAR+GLVN+V RFDVE GSDFVSFAVPTIMGEVRRHFRD W+V+VPR Sbjct: 61 DGRGEAHDDLVQVARLGLVNSVDRFDVERGSDFVSFAVPTIMGEVRRHFRDTGWAVRVPR 120 Query: 119 RLKELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXX 178 R+KELHL L A AELSQ LG AP +++ EV +GL+AG++Y T+ Sbjct: 121 RMKELHLALSQAVAELSQSLGHAPTVSELAEHLDLEQEEVAQGLLAGNAYQTVSVDNTSS 180 Query: 179 XXXXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAER 238 ++ +TLGD DA +D +E+ TVL+LRFF +MTQTQIA+R Sbjct: 181 DRTGEL-SMVETLGDYDAAMDDVENHETLRPLLQSLPERERTVLMLRFFGNMTQTQIADR 239 Query: 239 VGISQMHVXXXXXXXXXXXXDQL 261 VGISQMHV DQL Sbjct: 240 VGISQMHVSRLLAKTLASLRDQL 262 >tr|C3JIJ6|C3JIJ6_RHOER Tax_Id=596309 SubName: Full=RNA polymerase sigma-F factor;[Rhodococcus erythropolis SK121] Length = 264 Score = 242 bits (618), Expect = 3e-62 Identities = 125/249 (50%), Positives = 162/249 (65%), Gaps = 1/249 (0%) Query: 14 NEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDLVQVAR 73 +EY DV +F EL T + SP ++R R ++ RCLPLA+HIARRF+GRGE DDLVQVAR Sbjct: 17 DEYRDVIPVFEELRTLEPHSPEYERVRTALITRCLPLAEHIARRFDGRGEAHDDLVQVAR 76 Query: 74 VGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 133 +GLVNAV RFD GSDFVSFAVPT+MGEVRRHFRD W+++VPRR+KELH +LG A +E Sbjct: 77 LGLVNAVDRFDSTRGSDFVSFAVPTVMGEVRRHFRDTGWALRVPRRMKELHFQLGQAISE 136 Query: 134 LSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIADTLGD 193 LSQ+LG AP ++R EV + L+AG++Y T+ + +TLGD Sbjct: 137 LSQQLGHAPTVDELAETLGIEREEVAQALIAGNAYQTVSVDGAASNHTDDL-PLVETLGD 195 Query: 194 MDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHVXXXXXXX 253 DA L+ +E+ TVL+LRFF ++TQTQIAE+VG+SQMHV Sbjct: 196 YDAALENVENHEALRPLLDKLPERERTVLMLRFFGNLTQTQIAEKVGVSQMHVSRLLAKT 255 Query: 254 XXXXXDQLE 262 +QL+ Sbjct: 256 LSNLREQLD 264 >tr|C0ZUP1|C0ZUP1_RHOE4 Tax_Id=234621 (sigF)SubName: Full=RNA polymerase sigma factor SigF;[Rhodococcus erythropolis] Length = 264 Score = 241 bits (616), Expect = 5e-62 Identities = 124/249 (49%), Positives = 162/249 (65%), Gaps = 1/249 (0%) Query: 14 NEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDLVQVAR 73 +EY DV +F E+ T + SP ++R R ++ RCLPLA+HIARRF+GRGE DDLVQVAR Sbjct: 17 DEYRDVIPVFEEMRTLEPHSPEYERVRTALITRCLPLAEHIARRFDGRGEAHDDLVQVAR 76 Query: 74 VGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 133 +GLVNAV RFD GSDFVSFAVPT+MGEVRRHFRD W+++VPRR+KELH +LG A +E Sbjct: 77 LGLVNAVDRFDSTRGSDFVSFAVPTVMGEVRRHFRDTGWALRVPRRMKELHFQLGQAISE 136 Query: 134 LSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIADTLGD 193 LSQ+LG AP ++R EV + L+AG++Y T+ + +TLGD Sbjct: 137 LSQQLGHAPTVDELAETLGIEREEVAQALIAGNAYQTVSVDGAASNHTDDL-PLVETLGD 195 Query: 194 MDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHVXXXXXXX 253 DA L+ +E+ TVL+LRFF ++TQTQIAE+VG+SQMHV Sbjct: 196 YDAALENVENHEALRPLLDKLPERERTVLMLRFFGNLTQTQIAEKVGVSQMHVSRLLAKT 255 Query: 254 XXXXXDQLE 262 +QL+ Sbjct: 256 LSNLREQLD 264 >tr|A4TCX2|A4TCX2_MYCGI Tax_Id=350054 SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family;[Mycobacterium gilvum] Length = 342 Score = 234 bits (596), Expect = 9e-60 Identities = 127/245 (51%), Positives = 163/245 (66%), Gaps = 3/245 (1%) Query: 3 SRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRG 62 +RTA S + + Y DV +MFRELA D DS F+R R+ I+ RCLPLADHIARRF GRG Sbjct: 77 ARTA--SPRKRDGYDDVLDMFRELAVLDRDSAAFRRQREAIIARCLPLADHIARRFRGRG 134 Query: 63 EPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKE 122 E +DLVQVARVGL+NAV RFDV++ +DF++FAVPT+MGEVRR+FRD+ WS+KVPRRLKE Sbjct: 135 EGHEDLVQVARVGLLNAVNRFDVDSANDFLAFAVPTMMGEVRRYFRDHGWSLKVPRRLKE 194 Query: 123 LHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNT-LXXXXXXXXXX 181 L++RL AA A+L+Q L RAP +DR EVVEGLVA ++Y+T Sbjct: 195 LNVRLNAARADLTQELNRAPTPSELAKYLGIDREEVVEGLVAANAYSTRSTEQPTTFSGD 254 Query: 182 XXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGI 241 ++ DT G D + ++ D VL LRFF+ TQ+QIAE++G+ Sbjct: 255 GEGLSLQDTFGAPDDNIQKVIDVNTVQPLLAALPERDRLVLKLRFFEDRTQSQIAEQIGV 314 Query: 242 SQMHV 246 SQMHV Sbjct: 315 SQMHV 319 >tr|A1T842|A1T842_MYCVP Tax_Id=350058 SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family;[Mycobacterium vanbaalenii] Length = 242 Score = 233 bits (594), Expect = 2e-59 Identities = 121/226 (53%), Positives = 155/226 (68%), Gaps = 1/226 (0%) Query: 22 MFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDLVQVARVGLVNAVV 81 MFRELA D S ++R RD I+ERCLPLADHIARRF GRGE +DLVQVARVGL+NAV Sbjct: 1 MFRELALLDEGSAPYRRQRDAIIERCLPLADHIARRFRGRGEAHEDLVQVARVGLLNAVN 60 Query: 82 RFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAELSQRLGRA 141 RFDV++ +DF++FAVPT+MGEVRR+FRD+ WS+KVPRRLKEL++RL +A +EL+ +L RA Sbjct: 61 RFDVDSANDFLAFAVPTMMGEVRRYFRDHGWSLKVPRRLKELNVRLNSARSELTHQLNRA 120 Query: 142 PXXXXXXXXXXMDRAEVVEGLVAGSSYNT-LXXXXXXXXXXXXARAIADTLGDMDAGLDR 200 P M+R E+VEGLVA ++Y+T + DT+G D G+ R Sbjct: 121 PTPSELAEFLGMERDEIVEGLVAANAYSTRSTEQETMRTGDGDGLTLLDTIGGPDEGIQR 180 Query: 201 IEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHV 246 + D VL LRFFD++TQ+QIAER+G+SQMHV Sbjct: 181 VIDIQTVQPLLAKLPARDRLVLQLRFFDNLTQSQIAERIGVSQMHV 226 >tr|C7MUM0|C7MUM0_SACVD Tax_Id=471857 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Saccharomonospora viridis] Length = 266 Score = 230 bits (587), Expect = 1e-58 Identities = 124/243 (51%), Positives = 159/243 (65%), Gaps = 6/243 (2%) Query: 4 RTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGE 63 + AGGS+ Y D+ +F LA D D P R+ I+ RCLPLA+HIARRF GRGE Sbjct: 13 KQAGGSAG----YEDLSPLFNALAALDPDDPQRVTLREEIITRCLPLAEHIARRFVGRGE 68 Query: 64 PRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKEL 123 PRDDLVQVAR+GL+NA+ RFD G++FV+FAVPTIMGEVRRHFRD+SW+V+VPRRLKEL Sbjct: 69 PRDDLVQVARLGLLNAIDRFDASRGTEFVAFAVPTIMGEVRRHFRDSSWAVRVPRRLKEL 128 Query: 124 HLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXX 183 HL L A+++L+QRLGRAP + +V +GL+AG++Y ++ Sbjct: 129 HLSLSQASSKLAQRLGRAPTPSELAAELGLSPEDVWDGLLAGNAYQSV--SMDAAYDDEG 186 Query: 184 ARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQ 243 +A+T+G D L+ +E VL+LRFF +MTQTQIAERVGISQ Sbjct: 187 TLPLAETVGHDDVELEHVEYHESLQPLLASLPERERRVLILRFFGNMTQTQIAERVGISQ 246 Query: 244 MHV 246 MHV Sbjct: 247 MHV 249 >tr|Q1B7Y0|Q1B7Y0_MYCSS Tax_Id=164756 SubName: Full=RNA polymerase, sigma 28 subunit;[Mycobacterium sp.] Length = 269 Score = 229 bits (584), Expect = 2e-58 Identities = 118/238 (49%), Positives = 155/238 (65%) Query: 9 SSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDL 68 S+ ++Y DVP+MFR L+ +P+ R R+ IV RCLPLADHIA R+ +GE DDL Sbjct: 16 STRTQDDYTDVPDMFRLLSVLSPGTPDHDRQRERIVTRCLPLADHIAFRYHRKGENLDDL 75 Query: 69 VQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG 128 VQ+ARVGL++AV RFD E G++F+SFAVPT++GE+RRHFRDN W++ VPRRLK+LH+++ Sbjct: 76 VQIARVGLMHAVNRFDPENGANFLSFAVPTMLGEIRRHFRDNGWAMHVPRRLKDLHVQIT 135 Query: 129 AATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIA 188 AT L+Q LGR P DR EVVE LVAG +Y+ R++A Sbjct: 136 RATPRLTQSLGRPPTPTDLAAELGADRQEVVECLVAGDAYSLRSIDSPISSSDDTTRSLA 195 Query: 189 DTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHV 246 DTLG++D ++ I D TV+ LRFF SMTQTQIAER+G+SQM V Sbjct: 196 DTLGEVDGEMEHITDRESLRPLLAALTERERTVISLRFFASMTQTQIAERIGVSQMQV 253 >tr|A3Q0M9|A3Q0M9_MYCSJ Tax_Id=164757 SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family;[Mycobacterium sp.] Length = 269 Score = 229 bits (584), Expect = 2e-58 Identities = 118/238 (49%), Positives = 155/238 (65%) Query: 9 SSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDL 68 S+ ++Y DVP+MFR L+ +P+ R R+ IV RCLPLADHIA R+ +GE DDL Sbjct: 16 STRTQDDYTDVPDMFRLLSVLSPGTPDHDRQRERIVTRCLPLADHIAFRYHRKGENLDDL 75 Query: 69 VQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG 128 VQ+ARVGL++AV RFD E G++F+SFAVPT++GE+RRHFRDN W++ VPRRLK+LH+++ Sbjct: 76 VQIARVGLMHAVNRFDPENGANFLSFAVPTMLGEIRRHFRDNGWAMHVPRRLKDLHVQIT 135 Query: 129 AATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIA 188 AT L+Q LGR P DR EVVE LVAG +Y+ R++A Sbjct: 136 RATPRLTQSLGRPPTPTDLAAELGADRQEVVECLVAGDAYSLRSIDSPISSSDDTTRSLA 195 Query: 189 DTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHV 246 DTLG++D ++ I D TV+ LRFF SMTQTQIAER+G+SQM V Sbjct: 196 DTLGEVDGEMEHITDRESLRPLLAALTERERTVISLRFFASMTQTQIAERIGVSQMQV 253 >tr|A1UH27|A1UH27_MYCSK Tax_Id=189918 SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family;[Mycobacterium sp.] Length = 269 Score = 229 bits (584), Expect = 2e-58 Identities = 118/238 (49%), Positives = 155/238 (65%) Query: 9 SSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDL 68 S+ ++Y DVP+MFR L+ +P+ R R+ IV RCLPLADHIA R+ +GE DDL Sbjct: 16 STRTQDDYTDVPDMFRLLSVLSPGTPDHDRQRERIVTRCLPLADHIAFRYHRKGENLDDL 75 Query: 69 VQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG 128 VQ+ARVGL++AV RFD E G++F+SFAVPT++GE+RRHFRDN W++ VPRRLK+LH+++ Sbjct: 76 VQIARVGLMHAVNRFDPENGANFLSFAVPTMLGEIRRHFRDNGWAMHVPRRLKDLHVQIT 135 Query: 129 AATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIA 188 AT L+Q LGR P DR EVVE LVAG +Y+ R++A Sbjct: 136 RATPRLTQSLGRPPTPTDLAAELGADRQEVVECLVAGDAYSLRSIDSPISSSDDTTRSLA 195 Query: 189 DTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHV 246 DTLG++D ++ I D TV+ LRFF SMTQTQIAER+G+SQM V Sbjct: 196 DTLGEVDGEMEHITDRESLRPLLAALTERERTVISLRFFASMTQTQIAERIGVSQMQV 253 >tr|C7MSF3|C7MSF3_SACVD Tax_Id=471857 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Saccharomonospora viridis] Length = 267 Score = 224 bits (572), Expect = 6e-57 Identities = 121/246 (49%), Positives = 153/246 (62%), Gaps = 1/246 (0%) Query: 1 VTSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEG 60 +T T GS + ++Y + +F E A D D P RD +V LPLA+HIA+RF G Sbjct: 1 MTESTTQGSRTPSDDYQHLTPLFEEFAALDPDDPRRAELRDRLVTGHLPLAEHIAQRFSG 60 Query: 61 RGEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRL 120 RG ++DLVQVARVGL+NAV RFD GSDF+SFAVPT+MGEVRRHFRD W ++VPRRL Sbjct: 61 RGVAKEDLVQVARVGLINAVDRFDPSRGSDFLSFAVPTVMGEVRRHFRDTGWVIRVPRRL 120 Query: 121 KELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXX 180 KELHL + A+ +LSQRLGRAP + EV EGL AG++Y+++ Sbjct: 121 KELHLSINNASTQLSQRLGRAPTPSEIADHLGLTLEEVFEGLEAGNAYHSMSLDEVLSAD 180 Query: 181 XXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVG 240 A+ DTLG+ DA L +E+ T+L LRF +MTQTQIAER+G Sbjct: 181 TENL-ALGDTLGEEDAALAGVENHETLQPLVKQLPERERTILALRFVHNMTQTQIAERIG 239 Query: 241 ISQMHV 246 ISQMHV Sbjct: 240 ISQMHV 245 >tr|A4TCX3|A4TCX3_MYCGI Tax_Id=350054 SubName: Full=RNA polymerase, sigma 28 subunit, FliA/WhiG family;[Mycobacterium gilvum] Length = 270 Score = 224 bits (570), Expect = 1e-56 Identities = 122/232 (52%), Positives = 149/232 (64%), Gaps = 1/232 (0%) Query: 15 EYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDLVQVARV 74 EY+DVP M R L D SP ++R + I+ LPLA H ARRF GRG+ DDL QVA V Sbjct: 7 EYSDVPNMIRALRQLDPASPEYRRLHERIIAMTLPLAQHTARRFRGRGQSHDDLFQVASV 66 Query: 75 GLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAEL 134 GLVNAV RFD ++GSDF+++AVPTIMGEVRR+FRD SW+VKVPRRLK+L+ +L A AEL Sbjct: 67 GLVNAVKRFDPDSGSDFLAYAVPTIMGEVRRYFRDCSWAVKVPRRLKDLNSQLAKARAEL 126 Query: 135 SQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIADTLGDM 194 +Q+LGRAP +DR EVV+ +A S+Y TL A+ +TLG+ Sbjct: 127 TQQLGRAPTPSEVAAHLGIDREEVVQATIASSNYATLSTDSTSGPDGDFV-ALRETLGEP 185 Query: 195 DAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHV 246 DA LD + D VL LRFFD MTQTQIAER+G SQMHV Sbjct: 186 DARLDAVVDNETIRPLIEKLPPREQAVLKLRFFDEMTQTQIAERMGYSQMHV 237 >tr|C6W9Z3|C6W9Z3_ACTMD Tax_Id=446462 SubName: Full=RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily;[Actinosynnema mirum] Length = 268 Score = 221 bits (562), Expect = 8e-56 Identities = 124/260 (47%), Positives = 157/260 (60%), Gaps = 1/260 (0%) Query: 3 SRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRG 62 ++ A G SS +Y + +F LA A P +R RD +V LP+A HIARRF RG Sbjct: 9 TKAASGKSSSQGDYDHLAPLFTRLAQTPASDPARERLRDELVTEHLPVARHIARRFGHRG 68 Query: 63 EPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKE 122 EP DDLVQVA VGL+NAV RFD E GSDF+SFAVPTIMGEVR++FRD+SWSV++PRRLKE Sbjct: 69 EPHDDLVQVATVGLINAVDRFDPERGSDFLSFAVPTIMGEVRKYFRDSSWSVRMPRRLKE 128 Query: 123 LHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXX 182 LHL + A +A LSQ LGRAP + R EV EGL AG++Y++ Sbjct: 129 LHLAINAGSARLSQELGRAPTPSELAQHLGLSREEVHEGLAAGNAYHS-ASLDDLLVADD 187 Query: 183 XARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGIS 242 + ++ TLG+ D L+ IE ++V+RFF +MTQTQIA++VGIS Sbjct: 188 SSISLGSTLGEEDPELEAIEQRESLHPLLEKLPERERRIVVMRFFGNMTQTQIAQKVGIS 247 Query: 243 QMHVXXXXXXXXXXXXDQLE 262 QMHV D LE Sbjct: 248 QMHVSRLLAKTLRQLRDGLE 267 >tr|Q73ZX7|Q73ZX7_MYCPA Tax_Id=1770 (sigF)SubName: Full=SigF_1;[Mycobacterium paratuberculosis] Length = 269 Score = 218 bits (555), Expect = 5e-55 Identities = 120/262 (45%), Positives = 157/262 (59%), Gaps = 1/262 (0%) Query: 2 TSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGR 61 T A +S + Y DV EMF EL A+S ++R R+ IV RCLPLADH+A F R Sbjct: 8 TPTAARPTSQSDDSYEDVVEMFLELRRMPAESHEYRRQRERIVARCLPLADHVASHFARR 67 Query: 62 GEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLK 121 GE DDLVQVAR+GL+NAV RFD G F+ FAVPT+MGEVRR+FRD SW ++VPRRL+ Sbjct: 68 GEGLDDLVQVARLGLMNAVNRFDPAKGPSFIGFAVPTMMGEVRRYFRDYSWGMRVPRRLR 127 Query: 122 ELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYN-TLXXXXXXXXX 180 ELH+++ TA+L+Q+LGRAP + R E+VE LVAG +Y Sbjct: 128 ELHVQISRTTADLAQQLGRAPNAGELSQVLEVPREEIVECLVAGDAYRLDSLDAPQGADS 187 Query: 181 XXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVG 240 R++AD++GD+D ++ I + VL +RFF+SMTQ+QIAER+G Sbjct: 188 SGTPRSVADSVGDIDPQIEHITNREALRVLVATLPHREREVLRMRFFESMTQSQIAERIG 247 Query: 241 ISQMHVXXXXXXXXXXXXDQLE 262 +SQM V DQLE Sbjct: 248 VSQMQVSRILANTLRCLRDQLE 269 >tr|Q5YTN8|Q5YTN8_NOCFA Tax_Id=37329 SubName: Full=Putative sigma factor;[Nocardia farcinica] Length = 315 Score = 217 bits (553), Expect = 9e-55 Identities = 112/231 (48%), Positives = 152/231 (65%), Gaps = 1/231 (0%) Query: 16 YADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDLVQVARVG 75 Y D+P++F LA + + RD ++ RC+PLADHIAR+F GRGEP DDL QVARVG Sbjct: 68 YDDLPDLFDRLAAVEPGTAEHAALRDELISRCVPLADHIARKFSGRGEPFDDLTQVARVG 127 Query: 76 LVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAELS 135 LV+AV RFD GS+F+SFAVPTIMGEVRR+FRD++W+++VPRR+KE HLR+GAA LS Sbjct: 128 LVHAVDRFDPARGSNFLSFAVPTIMGEVRRYFRDHTWAMRVPRRVKETHLRIGAAIDTLS 187 Query: 136 QRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIADTLGDMD 195 Q LGR+P +D EV + ++AG++Y A ++ DTLG+ + Sbjct: 188 QSLGRSPTAKEIAAELRVDPDEVTQAVIAGNAYQPSSIDAAALGRESDA-SLLDTLGEEE 246 Query: 196 AGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHV 246 A +R+E+ +L +RFF+SMTQTQIA+++GISQMHV Sbjct: 247 AQFERVEEYVAIRPLLAGLPERERRILTMRFFESMTQTQIAKQMGISQMHV 297 >tr|A0QGW1|A0QGW1_MYCA1 Tax_Id=243243 SubName: Full=RNA polymerase sigma-F factor;[Mycobacterium avium] Length = 269 Score = 217 bits (552), Expect = 1e-54 Identities = 119/262 (45%), Positives = 157/262 (59%), Gaps = 1/262 (0%) Query: 2 TSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGR 61 T A ++ + Y DV EMF EL A+S ++R R+ IV RCLPLADH+A F R Sbjct: 8 TPTAARPTTQSDDSYEDVVEMFLELRRMPAESHEYRRQRERIVARCLPLADHVASHFARR 67 Query: 62 GEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLK 121 GE DDLVQVAR+GL+NAV RFD G F+ FAVPT+MGEVRR+FRD SW ++VPRRL+ Sbjct: 68 GEGLDDLVQVARLGLMNAVNRFDPAKGPSFIGFAVPTMMGEVRRYFRDYSWGMRVPRRLR 127 Query: 122 ELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYN-TLXXXXXXXXX 180 ELH+++ TA+L+Q+LGRAP + R E+VE LVAG +Y Sbjct: 128 ELHVQISRTTADLAQQLGRAPNAGELSQVLEVPREEIVECLVAGDAYRLDSLDAPQGADS 187 Query: 181 XXXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVG 240 R++AD++GD+D ++ I + VL +RFF+SMTQ+QIAER+G Sbjct: 188 SGTPRSVADSVGDIDPQIEHITNREALRVLVATLPHREREVLRMRFFESMTQSQIAERIG 247 Query: 241 ISQMHVXXXXXXXXXXXXDQLE 262 +SQM V DQLE Sbjct: 248 VSQMQVSRILANTLRCLRDQLE 269 >tr|B1MBH1|B1MBH1_MYCA9 Tax_Id=561007 SubName: Full=Alternative sigma factor SigF;[Mycobacterium abscessus] Length = 272 Score = 214 bits (544), Expect = 1e-53 Identities = 110/233 (47%), Positives = 147/233 (63%) Query: 14 NEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDLVQVAR 73 ++YADVP+MFR LA S +QR + IV RCLPLAD++AR F+ RGE +DL+QVAR Sbjct: 24 DDYADVPDMFRSLAGLAEHSDAYQRKHEEIVTRCLPLADNVARHFDRRGEDLEDLIQVAR 83 Query: 74 VGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 133 VGL+NAV RFD E G+ F+ FAVPT+MGEVRRHFRD+ WS+ VPR +++ H ++ ATAE Sbjct: 84 VGLLNAVNRFDPEKGASFLGFAVPTMMGEVRRHFRDHGWSLHVPRAIRDRHAQISRATAE 143 Query: 134 LSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIADTLGD 193 L+Q L RAP +DR EVVE L+A +Y ++ ++D LG+ Sbjct: 144 LTQELQRAPTAGELAAELGIDREEVVESLIAADAYQPQSIEAPLSHGDQESKHLSDLLGN 203 Query: 194 MDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHV 246 D L+ + + TVL LRFF MTQ+QIA ++G+SQMHV Sbjct: 204 EDPALEHVTNREAVRPLLANLPLRERTVLELRFFKGMTQSQIAAQIGVSQMHV 256 >tr|D0L5V1|D0L5V1_GORB4 Tax_Id=526226 SubName: Full=RNA polymerase sigma-70 factor, sigma-B/F/G subfamily;[Gordonia bronchialis] Length = 276 Score = 213 bits (542), Expect = 2e-53 Identities = 116/245 (47%), Positives = 153/245 (62%), Gaps = 3/245 (1%) Query: 2 TSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGR 61 T + G + ++YADV REL+ + D+ + RD I+ERCLPLA+H+A RF R Sbjct: 11 TDASRGTGARHGDDYADVVAALRELSA-ETDAAAHAKKRDNIIERCLPLAEHVAWRFSDR 69 Query: 62 GEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLK 121 GEP DDL+QVAR+G+VNAV RFD E G F+SFAVPT+MGEVRRHFRD+ W+++VPRR K Sbjct: 70 GEPFDDLLQVARIGVVNAVDRFDGERGDSFLSFAVPTVMGEVRRHFRDSMWAIRVPRRAK 129 Query: 122 ELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXX 181 E L +G AT EL QRLGR+P + EV++GL+A S+Y Sbjct: 130 ETSLSIGKATDELVQRLGRSPRPSELAAHLGLPVDEVIDGLLARSAYQA--RSIDATPED 187 Query: 182 XXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGI 241 R+I DTLGD DA L +I++ ++ LRFF +M+Q++IA RVGI Sbjct: 188 DDGRSIRDTLGDDDARLAQIDEFVTLRPVLDQLPDREREIVTLRFFHAMSQSEIAARVGI 247 Query: 242 SQMHV 246 SQMHV Sbjct: 248 SQMHV 252 >tr|C1BBL7|C1BBL7_RHOOB Tax_Id=632772 SubName: Full=RNA polymerase sigma factor;[Rhodococcus opacus] Length = 285 Score = 213 bits (541), Expect = 2e-53 Identities = 118/245 (48%), Positives = 147/245 (60%), Gaps = 6/245 (2%) Query: 2 TSRTAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGR 61 T RTA S ++Y DVP + A P + R ++ERCLPLA+HIARRF GR Sbjct: 24 THRTA---SRERDQYRDVPAQCAAIGRLAASDPRRELLRQRLIERCLPLAEHIARRFLGR 80 Query: 62 GEPRDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLK 121 GEP DDL+QVAR+GLV AV RFD G+ FVS+AVPTI GEVRRHFRD W++ VPR ++ Sbjct: 81 GEPLDDLIQVARLGLVKAVDRFDARCGASFVSYAVPTITGEVRRHFRDTGWAMHVPRSMQ 140 Query: 122 ELHLRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXX 181 ELHL L AT EL+ LGRAP +D+ EV GL +Y+TL Sbjct: 141 ELHLSLTNATTELTTTLGRAPTASELAEALGIDKDEVARGLRVSDAYSTL---SVDFPLG 197 Query: 182 XXARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGI 241 R +++T+GD+D L +ED TVLVLRFF +MTQ+QIA RVG+ Sbjct: 198 EDERPLSETIGDVDPSLAHVEDHVVLEPLLGSLPDLERTVLVLRFFGNMTQSQIAARVGV 257 Query: 242 SQMHV 246 SQM V Sbjct: 258 SQMQV 262 >tr|C0ZT10|C0ZT10_RHOE4 Tax_Id=234621 SubName: Full=RNA polymerase sigma factor;[Rhodococcus erythropolis] Length = 272 Score = 213 bits (541), Expect = 2e-53 Identities = 112/235 (47%), Positives = 148/235 (62%), Gaps = 1/235 (0%) Query: 12 RPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDLVQV 71 + ++Y E+F +A+ D P ++ ++I+E CLPLA H+ARR++GRG+P +DL QV Sbjct: 20 KKDQYELAVELFVSMASLPPDDPTREKITNSIIELCLPLATHVARRYQGRGQPFEDLEQV 79 Query: 72 ARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAAT 131 ARVGLV AV RFDV+ GSDF+SFAVPT+MGEVR+HFRD+ WSV+VPR L+E HL L A Sbjct: 80 ARVGLVQAVQRFDVDKGSDFLSFAVPTVMGEVRKHFRDHGWSVRVPRSLQERHLALNRAL 139 Query: 132 AELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIADTL 191 LSQ LGRAP ++ EV +GL AG+SY T I DTL Sbjct: 140 TSLSQTLGRAPTVAELATELDIEPDEVEQGLTAGNSYRTTPLDTASAGDGSGLTLI-DTL 198 Query: 192 GDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHV 246 G D + RI++ T++VLRFF +TQ+QIAE++GISQMHV Sbjct: 199 GQYDEAISRIDNHETLRPALLALPERERTIVVLRFFGHLTQSQIAEKIGISQMHV 253 >tr|C3JPK6|C3JPK6_RHOER Tax_Id=596309 SubName: Full=RNA polymerase sigma-F factor;[Rhodococcus erythropolis SK121] Length = 260 Score = 211 bits (537), Expect = 7e-53 Identities = 111/235 (47%), Positives = 148/235 (62%), Gaps = 1/235 (0%) Query: 12 RPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDLVQV 71 + ++Y E+F +A+ + P+ ++ +I+E CLPLA H+ARR++GRG+P +DL QV Sbjct: 8 KKDQYETAVELFVSMASLPPNDPSREKITTSIIELCLPLATHVARRYQGRGQPFEDLEQV 67 Query: 72 ARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAAT 131 ARVGL+ AV RFDV+ GSDF+SFAVPT+MGEVR+HFRD+ WSV+VPR L+E HL L A Sbjct: 68 ARVGLIQAVQRFDVDKGSDFLSFAVPTVMGEVRKHFRDHGWSVRVPRSLQERHLALNRAL 127 Query: 132 AELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIADTL 191 LSQ LGRAP ++ EV +GL AG+SY T I DTL Sbjct: 128 TTLSQTLGRAPTVAELAKELDIEPDEVEQGLTAGNSYRTTPLDTASAGDGSGLTLI-DTL 186 Query: 192 GDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHV 246 G D + RI++ T++VLRFF +TQ+QIAE+VGISQMHV Sbjct: 187 GQYDEAISRIDNHETLRPALLALPERERTIVVLRFFGHLTQSQIAEKVGISQMHV 241 >tr|Q0S7H3|Q0S7H3_RHOSR Tax_Id=101510 SubName: Full=Sigma factor, sigma 70 type, group 3;[Rhodococcus sp.] Length = 249 Score = 209 bits (531), Expect = 3e-52 Identities = 111/228 (48%), Positives = 142/228 (62%), Gaps = 3/228 (1%) Query: 19 VPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDLVQVARVGLVN 78 +P + A P + R ++ERCLPLA+HIARRF GRGEP DDL+QVAR+GLV Sbjct: 1 MPAQCEAIGRLAASDPRREVLRQRLIERCLPLAEHIARRFHGRGEPLDDLIQVARLGLVK 60 Query: 79 AVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAELSQRL 138 AV RFD G++FVS+AVPTI GEVRRHFRD W+++VPR ++ELHL L AT EL+ L Sbjct: 61 AVDRFDARCGANFVSYAVPTITGEVRRHFRDTGWAMRVPRSMQELHLSLTNATTELTTTL 120 Query: 139 GRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIADTLGDMDAGL 198 GRAP +D+ EVV+GL +Y+TL R +++T+GD+D L Sbjct: 121 GRAPTASELAEAVGIDKDEVVQGLRVADAYSTL---STDFPLGENERPLSETIGDVDPAL 177 Query: 199 DRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHV 246 +ED TVLVLRFF +MTQ+QIA RVG+SQM V Sbjct: 178 AHVEDHVVLAPLLESLPDLERTVLVLRFFGNMTQSQIAARVGVSQMQV 225 >tr|Q0SKK2|Q0SKK2_RHOSR Tax_Id=101510 SubName: Full=Sigma factor, sigma 70 type, group 3;[Rhodococcus sp.] Length = 265 Score = 207 bits (527), Expect = 9e-52 Identities = 117/241 (48%), Positives = 145/241 (60%), Gaps = 3/241 (1%) Query: 8 GSSSRP--NEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPR 65 G RP ++Y DV L DA S RD ++ RCLPLADHIARRF GRGE Sbjct: 8 GERHRPGRDDYKDVAPTVARLRALDASSGEASALRDEVITRCLPLADHIARRFGGRGEAH 67 Query: 66 DDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHL 125 +DL+QVAR+GLV AV RFD + G DFVS+AVPTIMGEVRR+FRD WS++VPRR++ELH Sbjct: 68 EDLLQVARLGLVKAVDRFDPDRGFDFVSYAVPTIMGEVRRYFRDTGWSMRVPRRMQELHA 127 Query: 126 RLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXAR 185 + A ELSQ LGR+P +D EV EGL+A ++Y TL Sbjct: 128 LITKAVDELSQELGRSPSASEIAAQLELDVREVSEGLLAKNAYQTLSMDAAMGDDPDDL- 186 Query: 186 AIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMH 245 +A+TLG+ D L +E VL+LRFF SMTQT+IA+RVG+SQM Sbjct: 187 PLAETLGEEDPELANVESHAAVRPALQKLPPLERRVLMLRFFGSMTQTEIAQRVGVSQMQ 246 Query: 246 V 246 V Sbjct: 247 V 247 >tr|C1ASL4|C1ASL4_RHOOB Tax_Id=632772 SubName: Full=RNA polymerase sigma factor;[Rhodococcus opacus] Length = 265 Score = 203 bits (517), Expect = 1e-50 Identities = 113/233 (48%), Positives = 141/233 (60%), Gaps = 1/233 (0%) Query: 14 NEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDLVQVAR 73 ++Y DV L + S RD I+ RCLPLADHIARRF GRGE +DL+QVAR Sbjct: 16 DDYKDVAPAVARLRILEESSGEASALRDEIITRCLPLADHIARRFGGRGEAHEDLLQVAR 75 Query: 74 VGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAE 133 +GLV AV RFD + G DFVS+AVPTIMGEVRR+FRD WS++VPRR++ELH + A E Sbjct: 76 LGLVKAVDRFDPDRGFDFVSYAVPTIMGEVRRYFRDTGWSMRVPRRMQELHALIAKAVDE 135 Query: 134 LSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIADTLGD 193 LSQ LGR+P +D EV EGL+A ++Y TL +A+TLG+ Sbjct: 136 LSQELGRSPSASEIAAELELDVREVSEGLLAKNAYQTLSMDAAMGDDPDDL-PLAETLGE 194 Query: 194 MDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHV 246 D L +E VL+LRFF SMTQT+IA+RVG+SQM V Sbjct: 195 EDPELANVESHASVRPALEKLPPLERRVLMLRFFGSMTQTEIAQRVGVSQMQV 247 >tr|A4FLE7|A4FLE7_SACEN Tax_Id=405948 (sig1)SubName: Full=RNA polymerase sigma factor;[Saccharopolyspora erythraea] Length = 280 Score = 200 bits (509), Expect = 1e-49 Identities = 108/238 (45%), Positives = 142/238 (59%), Gaps = 2/238 (0%) Query: 9 SSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDL 68 ++SR Y ++ +F E A + P ++ RD +V LP+A+HIARRF RGE ++DL Sbjct: 10 AASRNQRYDELAPLFAEFAKVERQDPRHEQLRDRLVTEHLPVAEHIARRFSHRGESQEDL 69 Query: 69 VQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG 128 QVA +GL+NAV RFD G DF+S+AVPTIMGEVRRHFRD W+V++PRRL+ELHL + Sbjct: 70 TQVATLGLINAVDRFDPGRGVDFLSYAVPTIMGEVRRHFRDTGWAVRMPRRLQELHLSVS 129 Query: 129 AATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIA 188 AA A LSQ GRAP + +V GL AG++Y + + Sbjct: 130 AAIARLSQEFGRAPTPSEIAEHLGISTNDVYHGLEAGNAYRSASLDELLTDTDEI--PLG 187 Query: 189 DTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHV 246 D +G DA LD +E+ +LV+RFF MTQTQIAE+VGISQMHV Sbjct: 188 DAIGSNDAELDEVENRETIRPLLAELEERERRILVMRFFRGMTQTQIAEQVGISQMHV 245 >tr|Q75NJ0|Q75NJ0_SACER Tax_Id=1836 (sigH)SubName: Full=RNA polymerase alternative sigma factor;[Saccharopolyspora erythraea] Length = 280 Score = 200 bits (509), Expect = 1e-49 Identities = 108/238 (45%), Positives = 142/238 (59%), Gaps = 2/238 (0%) Query: 9 SSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDL 68 ++SR Y ++ +F E A + P ++ RD +V LP+A+HIARRF RGE ++DL Sbjct: 10 AASRNQRYDELAPLFAEFAKVERQDPRHEQLRDRLVTEHLPVAEHIARRFSHRGESQEDL 69 Query: 69 VQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLG 128 QVA +GL+NAV RFD G DF+S+AVPTIMGEVRRHFRD W+V++PRRL+ELHL + Sbjct: 70 TQVATLGLINAVDRFDPGRGVDFLSYAVPTIMGEVRRHFRDTGWAVRMPRRLQELHLSVS 129 Query: 129 AATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIA 188 AA A LSQ GRAP + +V GL AG++Y + + Sbjct: 130 AAIARLSQEFGRAPTPSEIAEHLGISTNDVYHGLEAGNAYRSASLDELLTDTDEI--PLG 187 Query: 189 DTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHV 246 D +G DA LD +E+ +LV+RFF MTQTQIAE+VGISQMHV Sbjct: 188 DAIGSNDAELDEVENRETIRPLLAELEERERRILVMRFFRGMTQTQIAEQVGISQMHV 245 >tr|Q5Z3J2|Q5Z3J2_NOCFA Tax_Id=37329 SubName: Full=Putative sigma factor;[Nocardia farcinica] Length = 266 Score = 198 bits (504), Expect = 4e-49 Identities = 112/243 (46%), Positives = 143/243 (58%), Gaps = 1/243 (0%) Query: 5 TAGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEP 64 T G + + Y D+ F EL D P + R+ ++ERCLPLA+HIAR+F GRGE Sbjct: 6 TGGSTRAAAGGYQDLEPHFVELRALAEDDPRRRALREELIERCLPLAEHIARKFSGRGEN 65 Query: 65 RDDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELH 124 +DL+Q+ARVG+V AV RFD G+ F+ FAVPTIMGEVRRHFRD++WSV+VPRRLKEL Sbjct: 66 FEDLLQIARVGMVAAVDRFDPTQGAPFLGFAVPTIMGEVRRHFRDHTWSVRVPRRLKELQ 125 Query: 125 LRLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSYNT-LXXXXXXXXXXXX 183 L A L+QRLGR P +D AEV + LVA ++Y T Sbjct: 126 ATLNPAIETLTQRLGRMPKARELAEELGVDIAEVTQALVARNAYQTSSIDGSSGDDGESS 185 Query: 184 ARAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQ 243 A A+ADTLG D +E+ VLV+RFF SM+Q QIA+++G SQ Sbjct: 186 APALADTLGAEDPEFGTVENYLAVKPLIAALPEREQRVLVMRFFHSMSQEQIAQQIGCSQ 245 Query: 244 MHV 246 M V Sbjct: 246 MQV 248 >tr|C0UB07|C0UB07_9ACTO Tax_Id=526225 RecName: Full=RNA polymerase sigma factor;[Geodermatophilus obscurus DSM 43160] Length = 360 Score = 197 bits (501), Expect = 1e-48 Identities = 105/225 (46%), Positives = 138/225 (61%), Gaps = 1/225 (0%) Query: 22 MFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPRDDLVQVARVGLVNAVV 81 +F +LAT D D P +R R+ +VE LPL H ARRF RGEP DDL+QV +GL+ A+ Sbjct: 119 LFAQLATLDKDDPRRERLREVLVEEHLPLVRHFARRFSNRGEPFDDLLQVGTLGLIAAID 178 Query: 82 RFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHLRLGAATAELSQRLGRA 141 RFD G +F+SFAVPTI GE++RHFRD WSV+VPRRL+ELHL L AA EL+Q+ GRA Sbjct: 179 RFDPTRGVEFLSFAVPTITGEIKRHFRDQGWSVRVPRRLQELHLSLNAAVGELAQKNGRA 238 Query: 142 PXXXXXXXXXXMDRAEVVEGLVAGSSYNTLXXXXXXXXXXXXARAIADTLGDMDAGLDRI 201 P + RAEV+EGL ++Y + + +A TLG+ D+ L+ + Sbjct: 239 PTPSELAEHLGIPRAEVLEGLAVANAYRS-SSLDERLSGEDDSPTLAATLGEEDSALEGV 297 Query: 202 EDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQMHV 246 E +L+LRFF +MTQ+QIA +GISQMHV Sbjct: 298 EYRESLQPLLATIPARERRILILRFFGNMTQSQIAADIGISQMHV 342 >tr|Q5YW83|Q5YW83_NOCFA Tax_Id=37329 SubName: Full=Putative sigma factor;[Nocardia farcinica] Length = 261 Score = 197 bits (500), Expect = 1e-48 Identities = 106/242 (43%), Positives = 145/242 (59%), Gaps = 1/242 (0%) Query: 6 AGGSSSRPNEYADVPEMFRELATFDADSPNFQRHRDTIVERCLPLADHIARRFEGRGEPR 65 A S S + Y ++ +F ++A D P R +++R LPLA+HIARRF GRGE Sbjct: 2 AAESRSAGDSYDNIEPLFEKIAALDPGDPRRTALRAEVIDRALPLAEHIARRFAGRGESF 61 Query: 66 DDLVQVARVGLVNAVVRFDVETGSDFVSFAVPTIMGEVRRHFRDNSWSVKVPRRLKELHL 125 DDL+QVAR+GLV A RFDV GS F++FAVPTIMGEVRRHFRDN+W+V+VPRR KE+ Sbjct: 62 DDLLQVARLGLVQAADRFDVGRGSSFLAFAVPTIMGEVRRHFRDNTWAVRVPRRTKEIQG 121 Query: 126 RLGAATAELSQRLGRAPXXXXXXXXXXMDRAEVVEGLVAGSSY-NTLXXXXXXXXXXXXA 184 +GA ELSQRLGR P +D EV + L+AG++Y ++ Sbjct: 122 SIGATVEELSQRLGRMPRAREIAAELGIDVVEVTQALIAGNAYQSSSLDSTAGDDGENTP 181 Query: 185 RAIADTLGDMDAGLDRIEDXXXXXXXXXXXXXXXXTVLVLRFFDSMTQTQIAERVGISQM 244 ++++LG + + ++D VLV+RFF+ TQTQIA+ +G+SQM Sbjct: 182 LPLSESLGAEEPSFEFVDDYLAVRPLIAELPERERQVLVMRFFEGKTQTQIADVLGVSQM 241 Query: 245 HV 246 HV Sbjct: 242 HV 243 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.321 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 1,417,343,780 Number of extensions: 49224059 Number of successful extensions: 106774 Number of sequences better than 10.0: 6403 Number of HSP's gapped: 106004 Number of HSP's successfully gapped: 6405 Length of query: 262 Length of database: 3,846,993,858 Length adjustment: 135 Effective length of query: 127 Effective length of database: 2,324,841,453 Effective search space: 295254864531 Effective search space used: 295254864531 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 79 (35.0 bits)