BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MMAR_1334
         (255 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,275,203 sequences; 3,846,993,858 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|B2HET6|B2HET6_MYCMM Tax_Id=216594 (sigH)RecName: Full=RNA pol...   466   e-129
tr|A2VP22|A2VP22_MYCTU Tax_Id=348776 RecName: Full=RNA polymeras...   417   e-115
tr|C6DXG7|C6DXG7_MYCTK Tax_Id=478434 RecName: Full=RNA polymeras...   416   e-114
tr|A5WSD6|A5WSD6_MYCTF Tax_Id=336982 RecName: Full=RNA polymeras...   416   e-114
tr|A4KLC3|A4KLC3_MYCTU Tax_Id=395095 RecName: Full=RNA polymeras...   416   e-114
tr|Q73UP2|Q73UP2_MYCPA Tax_Id=1770 (sigH)RecName: Full=RNA polym...   403   e-111
tr|A0QK79|A0QK79_MYCA1 Tax_Id=243243 RecName: Full=RNA polymeras...   403   e-111
tr|A0PRB9|A0PRB9_MYCUA Tax_Id=362242 (sigH)RecName: Full=RNA pol...   392   e-107
sp|P66807|RPOE_MYCTU Tax_Id=1773 (rpoE)RecName: Full=RNA polymer...   375   e-102
sp|P66808|RPOE_MYCBO Tax_Id=1765 (rpoE)RecName: Full=RNA polymer...   375   e-102
tr|C1AGZ5|C1AGZ5_MYCBT Tax_Id=561275 (sigH_1)RecName: Full=RNA p...   375   e-102
tr|A5U7P6|A5U7P6_MYCTA Tax_Id=419947 (sigH)RecName: Full=RNA pol...   375   e-102
tr|A1KNM4|A1KNM4_MYCBP Tax_Id=410289 (sigH_1)RecName: Full=RNA p...   375   e-102
tr|Q1BC93|Q1BC93_MYCSS Tax_Id=164756 RecName: Full=RNA polymeras...   373   e-101
tr|A3PWD8|A3PWD8_MYCSJ Tax_Id=164757 RecName: Full=RNA polymeras...   373   e-101
tr|A1UCQ1|A1UCQ1_MYCSK Tax_Id=189918 RecName: Full=RNA polymeras...   373   e-101
tr|A1T600|A1T600_MYCVP Tax_Id=350058 RecName: Full=RNA polymeras...   369   e-100
tr|A4TFB2|A4TFB2_MYCGI Tax_Id=350054 RecName: Full=RNA polymeras...   365   2e-99
tr|A0QTP2|A0QTP2_MYCS2 Tax_Id=246196 RecName: Full=RNA polymeras...   354   6e-96
tr|Q9XCD8|Q9XCD8_MYCSM Tax_Id=1772 (sigH)RecName: Full=RNA polym...   354   6e-96
tr|Q0S2W8|Q0S2W8_RHOSR Tax_Id=101510 RecName: Full=RNA polymeras...   333   1e-89
tr|C1B1F4|C1B1F4_RHOOB Tax_Id=632772 (sigH)RecName: Full=RNA pol...   333   1e-89
tr|B1MF13|B1MF13_MYCA9 Tax_Id=561007 RecName: Full=RNA polymeras...   328   3e-88
tr|C0ZX09|C0ZX09_RHOE4 Tax_Id=234621 (sigH)RecName: Full=RNA pol...   323   9e-87
tr|C3JG40|C3JG40_RHOER Tax_Id=596309 RecName: Full=RNA polymeras...   323   9e-87
tr|Q5YQV6|Q5YQV6_NOCFA Tax_Id=37329 RecName: Full=RNA polymerase...   322   3e-86
tr|D0LF23|D0LF23_GORB4 Tax_Id=526226 SubName: Full=RNA polymeras...   322   3e-86
tr|C2ARM4|C2ARM4_TSUPA Tax_Id=521096 RecName: Full=RNA polymeras...   320   1e-85
tr|A3RDV8|A3RDV8_RHOOP Tax_Id=37919 RecName: Full=RNA polymerase...   301   5e-80
tr|C6WJ20|C6WJ20_ACTMD Tax_Id=446462 RecName: Full=RNA polymeras...   300   1e-79
tr|C0U935|C0U935_9ACTO Tax_Id=526225 RecName: Full=RNA polymeras...   293   1e-77
tr|C7MXX0|C7MXX0_SACVD Tax_Id=471857 SubName: Full=RNA polymeras...   292   2e-77
tr|A4FNH5|A4FNH5_SACEN Tax_Id=405948 (sigR)RecName: Full=RNA pol...   286   2e-75
tr|C4DSE5|C4DSE5_9ACTO Tax_Id=446470 SubName: Full=RNA polymeras...   283   1e-74
tr|C8XEF1|C8XEF1_NAKMY Tax_Id=479431 SubName: Full=RNA polymeras...   281   4e-74
tr|A0LSA1|A0LSA1_ACIC1 Tax_Id=351607 RecName: Full=RNA polymeras...   281   6e-74
tr|C4EDP8|C4EDP8_STRRS Tax_Id=479432 RecName: Full=RNA polymeras...   278   4e-73
tr|A4XB46|A4XB46_SALTO Tax_Id=369723 RecName: Full=RNA polymeras...   277   7e-73
tr|A8M3C2|A8M3C2_SALAI Tax_Id=391037 RecName: Full=RNA polymeras...   276   2e-72
tr|A8L2M4|A8L2M4_FRASN Tax_Id=298653 RecName: Full=RNA polymeras...   276   2e-72
tr|B5HN42|B5HN42_9ACTO Tax_Id=463191 RecName: Full=RNA polymeras...   274   6e-72
tr|Q47SI1|Q47SI1_THEFY Tax_Id=269800 SubName: Full=RNA polymeras...   274   8e-72
tr|C4RQX4|C4RQX4_9ACTO Tax_Id=219305 RecName: Full=RNA polymeras...   273   1e-71
tr|Q0RD39|Q0RD39_FRAAA Tax_Id=326424 RecName: Full=RNA polymeras...   271   4e-71
tr|B4V945|B4V945_9ACTO Tax_Id=465541 RecName: Full=RNA polymeras...   271   4e-71
tr|O87834|O87834_STRCO Tax_Id=1902 (sigR)RecName: Full=RNA polym...   270   9e-71
tr|D1ACI2|D1ACI2_THECU Tax_Id=471852 SubName: Full=RNA polymeras...   270   9e-71
tr|Q82IU5|Q82IU5_STRAW Tax_Id=33903 (sig22)RecName: Full=RNA pol...   270   1e-70
tr|C9ZAE8|C9ZAE8_STRSW Tax_Id=680198 (sigR)SubName: Full=Putativ...   270   1e-70
tr|C1YU34|C1YU34_NOCDA Tax_Id=446468 RecName: Full=RNA polymeras...   270   1e-70

>tr|B2HET6|B2HET6_MYCMM Tax_Id=216594 (sigH)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium marinum]
          Length = 255

 Score =  466 bits (1199), Expect = e-129
 Identities = 240/255 (94%), Positives = 241/255 (94%)

Query: 1   VSTSTSLLGEERLGRFPASPASVATLSGGTSTEGTVFIKMADIDGVTLXXXXXXXXXXXX 60
           +STSTSLLGEERLGRFPASPASVATLSGGTSTEGTVFIKMADIDGVTL            
Sbjct: 1   MSTSTSLLGEERLGRFPASPASVATLSGGTSTEGTVFIKMADIDGVTLAEAPDPEPPEET 60

Query: 61  XXQLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAW 120
             QLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAW
Sbjct: 61  DEQLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAW 120

Query: 121 LYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEI 180
           LYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEI
Sbjct: 121 LYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEI 180

Query: 181 KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKE 240
           KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKE
Sbjct: 181 KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKE 240

Query: 241 RGFVRGEQAHQEVSS 255
           RGFVRGEQAHQEVSS
Sbjct: 241 RGFVRGEQAHQEVSS 255


>tr|A2VP22|A2VP22_MYCTU Tax_Id=348776 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis C]
          Length = 255

 Score =  417 bits (1072), Expect = e-115
 Identities = 214/255 (83%), Positives = 224/255 (87%)

Query: 1   VSTSTSLLGEERLGRFPASPASVATLSGGTSTEGTVFIKMADIDGVTLXXXXXXXXXXXX 60
           +ST+TSLLGE+RL R  A P S   LSG T+ EGT  IKMADIDGVT             
Sbjct: 1   MSTATSLLGEKRLARMLARPVSAPVLSGDTANEGTQLIKMADIDGVTGSAGLQPGPSEET 60

Query: 61  XXQLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAW 120
             +LTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAW
Sbjct: 61  DEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAW 120

Query: 121 LYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEI 180
           LYRILTNTYINSYRKKQRQPAEYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEI
Sbjct: 121 LYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEI 180

Query: 181 KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKE 240
           KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLR LLADVA++
Sbjct: 181 KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARD 240

Query: 241 RGFVRGEQAHQEVSS 255
           RGF RGEQAH+ VSS
Sbjct: 241 RGFARGEQAHERVSS 255


>tr|C6DXG7|C6DXG7_MYCTK Tax_Id=478434 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis]
          Length = 255

 Score =  416 bits (1070), Expect = e-114
 Identities = 214/255 (83%), Positives = 224/255 (87%)

Query: 1   VSTSTSLLGEERLGRFPASPASVATLSGGTSTEGTVFIKMADIDGVTLXXXXXXXXXXXX 60
           +ST+TSLLGE+RL R  A P S   LSG T+ EGT  IKMADIDGVT             
Sbjct: 1   MSTATSLLGEKRLARMLARPVSAPVLSGDTANEGTQLIKMADIDGVTGSAGLQPGPSEET 60

Query: 61  XXQLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAW 120
             +LTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAW
Sbjct: 61  DEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAW 120

Query: 121 LYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEI 180
           LYRILTNTYINSYRKKQRQPAEYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEI
Sbjct: 121 LYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEI 180

Query: 181 KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKE 240
           KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLR LLADVA++
Sbjct: 181 KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARD 240

Query: 241 RGFVRGEQAHQEVSS 255
           RGF RGEQAH+ VSS
Sbjct: 241 RGFARGEQAHEGVSS 255


>tr|A5WSD6|A5WSD6_MYCTF Tax_Id=336982 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis]
          Length = 255

 Score =  416 bits (1070), Expect = e-114
 Identities = 214/255 (83%), Positives = 224/255 (87%)

Query: 1   VSTSTSLLGEERLGRFPASPASVATLSGGTSTEGTVFIKMADIDGVTLXXXXXXXXXXXX 60
           +ST+TSLLGE+RL R  A P S   LSG T+ EGT  IKMADIDGVT             
Sbjct: 1   MSTATSLLGEKRLARMLARPVSAPVLSGDTANEGTQLIKMADIDGVTGSAGLQPGPSEET 60

Query: 61  XXQLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAW 120
             +LTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAW
Sbjct: 61  DEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAW 120

Query: 121 LYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEI 180
           LYRILTNTYINSYRKKQRQPAEYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEI
Sbjct: 121 LYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEI 180

Query: 181 KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKE 240
           KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLR LLADVA++
Sbjct: 181 KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARD 240

Query: 241 RGFVRGEQAHQEVSS 255
           RGF RGEQAH+ VSS
Sbjct: 241 RGFARGEQAHEGVSS 255


>tr|A4KLC3|A4KLC3_MYCTU Tax_Id=395095 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium tuberculosis str. Haarlem]
          Length = 255

 Score =  416 bits (1070), Expect = e-114
 Identities = 214/255 (83%), Positives = 224/255 (87%)

Query: 1   VSTSTSLLGEERLGRFPASPASVATLSGGTSTEGTVFIKMADIDGVTLXXXXXXXXXXXX 60
           +ST+TSLLGE+RL R  A P S   LSG T+ EGT  IKMADIDGVT             
Sbjct: 1   MSTATSLLGEKRLARMLARPVSAPVLSGDTANEGTQLIKMADIDGVTGSAGLQPGPSEET 60

Query: 61  XXQLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAW 120
             +LTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFR GTNLKAW
Sbjct: 61  DEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFRHGTNLKAW 120

Query: 121 LYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEI 180
           LYRILTNTYINSYRKKQRQPAEYPT++ITDWQLASNAEHSSTGLRSAEVEALEALPDTEI
Sbjct: 121 LYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEHSSTGLRSAEVEALEALPDTEI 180

Query: 181 KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKE 240
           KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLR LLADVA++
Sbjct: 181 KEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRGLLADVARD 240

Query: 241 RGFVRGEQAHQEVSS 255
           RGF RGEQAH+ VSS
Sbjct: 241 RGFARGEQAHEGVSS 255


>tr|Q73UP2|Q73UP2_MYCPA Tax_Id=1770 (sigH)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium paratuberculosis]
          Length = 268

 Score =  403 bits (1036), Expect = e-111
 Identities = 213/267 (79%), Positives = 227/267 (85%), Gaps = 12/267 (4%)

Query: 1   VSTSTSLLGEERLGRFPASPASVATLSGGTSTEGTVFIKMADI----DGVT--------L 48
           VST+TSLLGEE+L  F ASP +++ LSG T+ EGT FI+MAD     DGVT         
Sbjct: 2   VSTATSLLGEEQLAGFLASPGALSVLSGDTAAEGTGFIEMADSPDGPDGVTSPEVPEAHA 61

Query: 49  XXXXXXXXXXXXXXQLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGF 108
                         +LTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGF
Sbjct: 62  EPAAHEEAREETDAELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGF 121

Query: 109 RSFREGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAE 168
           RSFR GTNLKAWLYRILTNTYINSYRKKQRQPAEYPT+EITDWQLASNAEHSSTGLRSAE
Sbjct: 122 RSFRAGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEEITDWQLASNAEHSSTGLRSAE 181

Query: 169 VEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRR 228
           VEALE+LPD+EIK+ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRR
Sbjct: 182 VEALESLPDSEIKDALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRR 241

Query: 229 QLRTLLADVAKERGFVRGEQAHQEVSS 255
           QLR LLADVAKERGF RG+Q H+EVSS
Sbjct: 242 QLRGLLADVAKERGFNRGQQTHEEVSS 268


>tr|A0QK79|A0QK79_MYCA1 Tax_Id=243243 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium avium]
          Length = 268

 Score =  403 bits (1036), Expect = e-111
 Identities = 213/267 (79%), Positives = 227/267 (85%), Gaps = 12/267 (4%)

Query: 1   VSTSTSLLGEERLGRFPASPASVATLSGGTSTEGTVFIKMADI----DGVT--------L 48
           VST+TSLLGEE+L  F ASP +++ LSG T+ EGT FI+MAD     DGVT         
Sbjct: 2   VSTATSLLGEEQLAGFLASPGALSVLSGDTAAEGTGFIEMADSPDGPDGVTSPEVPEAHA 61

Query: 49  XXXXXXXXXXXXXXQLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGF 108
                         +LTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGF
Sbjct: 62  EPAAHEETREETDAELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGF 121

Query: 109 RSFREGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAE 168
           RSFR GTNLKAWLYRILTNTYINSYRKKQRQPAEYPT+EITDWQLASNAEHSSTGLRSAE
Sbjct: 122 RSFRAGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEEITDWQLASNAEHSSTGLRSAE 181

Query: 169 VEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRR 228
           VEALE+LPD+EIK+ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRR
Sbjct: 182 VEALESLPDSEIKDALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRR 241

Query: 229 QLRTLLADVAKERGFVRGEQAHQEVSS 255
           QLR LLADVAKERGF RG+Q H+EVSS
Sbjct: 242 QLRGLLADVAKERGFNRGQQTHEEVSS 268


>tr|A0PRB9|A0PRB9_MYCUA Tax_Id=362242 (sigH)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium ulcerans]
          Length = 216

 Score =  392 bits (1006), Expect = e-107
 Identities = 201/216 (93%), Positives = 201/216 (93%)

Query: 40  MADIDGVTLXXXXXXXXXXXXXXQLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 99
           MADIDGVTL              QLTA FERDAIPLLDQLYGGALRMTRNPADAEDLLQE
Sbjct: 1   MADIDGVTLAEAPDPEPPEETDEQLTACFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60

Query: 100 TMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEH 159
           TMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEH
Sbjct: 61  TMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEH 120

Query: 160 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 219
           SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV
Sbjct: 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180

Query: 220 MSRLHRGRRQLRTLLADVAKERGFVRGEQAHQEVSS 255
           MSRLHRGRRQLRTLLADVAKERGFVRGEQAHQEVSS
Sbjct: 181 MSRLHRGRRQLRTLLADVAKERGFVRGEQAHQEVSS 216


>sp|P66807|RPOE_MYCTU Tax_Id=1773 (rpoE)RecName: Full=RNA polymerase
           sigma-E factor; AltName: Full=Sigma-24;[Mycobacterium
           tuberculosis]
          Length = 216

 Score =  375 bits (964), Expect = e-102
 Identities = 191/216 (88%), Positives = 197/216 (91%)

Query: 40  MADIDGVTLXXXXXXXXXXXXXXQLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 99
           MADIDGVT               +LTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE
Sbjct: 1   MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60

Query: 100 TMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEH 159
           TMVKAYAGFRSFR GTNLKAWLYRILTNTYINSYRKKQRQPAEYPT++ITDWQLASNAEH
Sbjct: 61  TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120

Query: 160 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 219
           SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV
Sbjct: 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180

Query: 220 MSRLHRGRRQLRTLLADVAKERGFVRGEQAHQEVSS 255
           MSRLHRGRRQLR LLADVA++RGF RGEQAH+ VSS
Sbjct: 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216


>sp|P66808|RPOE_MYCBO Tax_Id=1765 (rpoE)RecName: Full=RNA polymerase
           sigma-E factor; AltName: Full=Sigma-24;[Mycobacterium
           bovis]
          Length = 216

 Score =  375 bits (964), Expect = e-102
 Identities = 191/216 (88%), Positives = 197/216 (91%)

Query: 40  MADIDGVTLXXXXXXXXXXXXXXQLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 99
           MADIDGVT               +LTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE
Sbjct: 1   MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60

Query: 100 TMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEH 159
           TMVKAYAGFRSFR GTNLKAWLYRILTNTYINSYRKKQRQPAEYPT++ITDWQLASNAEH
Sbjct: 61  TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120

Query: 160 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 219
           SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV
Sbjct: 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180

Query: 220 MSRLHRGRRQLRTLLADVAKERGFVRGEQAHQEVSS 255
           MSRLHRGRRQLR LLADVA++RGF RGEQAH+ VSS
Sbjct: 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216


>tr|C1AGZ5|C1AGZ5_MYCBT Tax_Id=561275 (sigH_1)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium bovis]
          Length = 216

 Score =  375 bits (964), Expect = e-102
 Identities = 191/216 (88%), Positives = 197/216 (91%)

Query: 40  MADIDGVTLXXXXXXXXXXXXXXQLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 99
           MADIDGVT               +LTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE
Sbjct: 1   MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60

Query: 100 TMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEH 159
           TMVKAYAGFRSFR GTNLKAWLYRILTNTYINSYRKKQRQPAEYPT++ITDWQLASNAEH
Sbjct: 61  TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120

Query: 160 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 219
           SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV
Sbjct: 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180

Query: 220 MSRLHRGRRQLRTLLADVAKERGFVRGEQAHQEVSS 255
           MSRLHRGRRQLR LLADVA++RGF RGEQAH+ VSS
Sbjct: 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216


>tr|A5U7P6|A5U7P6_MYCTA Tax_Id=419947 (sigH)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium tuberculosis]
          Length = 216

 Score =  375 bits (964), Expect = e-102
 Identities = 191/216 (88%), Positives = 197/216 (91%)

Query: 40  MADIDGVTLXXXXXXXXXXXXXXQLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 99
           MADIDGVT               +LTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE
Sbjct: 1   MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60

Query: 100 TMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEH 159
           TMVKAYAGFRSFR GTNLKAWLYRILTNTYINSYRKKQRQPAEYPT++ITDWQLASNAEH
Sbjct: 61  TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120

Query: 160 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 219
           SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV
Sbjct: 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180

Query: 220 MSRLHRGRRQLRTLLADVAKERGFVRGEQAHQEVSS 255
           MSRLHRGRRQLR LLADVA++RGF RGEQAH+ VSS
Sbjct: 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216


>tr|A1KNM4|A1KNM4_MYCBP Tax_Id=410289 (sigH_1)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium bovis]
          Length = 216

 Score =  375 bits (964), Expect = e-102
 Identities = 191/216 (88%), Positives = 197/216 (91%)

Query: 40  MADIDGVTLXXXXXXXXXXXXXXQLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 99
           MADIDGVT               +LTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE
Sbjct: 1   MADIDGVTGSAGLQPGPSEETDEELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQE 60

Query: 100 TMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEH 159
           TMVKAYAGFRSFR GTNLKAWLYRILTNTYINSYRKKQRQPAEYPT++ITDWQLASNAEH
Sbjct: 61  TMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQITDWQLASNAEH 120

Query: 160 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 219
           SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV
Sbjct: 121 SSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTV 180

Query: 220 MSRLHRGRRQLRTLLADVAKERGFVRGEQAHQEVSS 255
           MSRLHRGRRQLR LLADVA++RGF RGEQAH+ VSS
Sbjct: 181 MSRLHRGRRQLRGLLADVARDRGFARGEQAHEGVSS 216


>tr|Q1BC93|Q1BC93_MYCSS Tax_Id=164756 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium sp.]
          Length = 237

 Score =  373 bits (957), Expect = e-101
 Identities = 191/236 (80%), Positives = 204/236 (86%), Gaps = 7/236 (2%)

Query: 20  PASVATLSGGTSTEGTVFIKMADIDGVTLXXXXXXXXXXXXXXQLTARFERDAIPLLDQL 79
           P  +  L  G +TEGTV   M DIDG                 +LTARFERDAIPLLDQL
Sbjct: 9   PVDLPGLFDGAATEGTVSTTMTDIDGAAAERQETDA-------ELTARFERDAIPLLDQL 61

Query: 80  YGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQ 139
           YGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQ
Sbjct: 62  YGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQ 121

Query: 140 PAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYAD 199
           P+EYPT+EITDWQLA+NAEHSSTGLRSAEVEALE+LPDTEIK ALQALPE+FRMAVYYAD
Sbjct: 122 PSEYPTEEITDWQLAANAEHSSTGLRSAEVEALESLPDTEIKAALQALPEDFRMAVYYAD 181

Query: 200 VEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFVRGEQAHQEVSS 255
           VEGFPYKEIAEIMDTPIGTVMSRLHRGR+QLR LLADVA++RGF+RG QA +EVSS
Sbjct: 182 VEGFPYKEIAEIMDTPIGTVMSRLHRGRKQLRELLADVARDRGFLRGAQAPEEVSS 237


>tr|A3PWD8|A3PWD8_MYCSJ Tax_Id=164757 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium sp.]
          Length = 237

 Score =  373 bits (957), Expect = e-101
 Identities = 191/236 (80%), Positives = 204/236 (86%), Gaps = 7/236 (2%)

Query: 20  PASVATLSGGTSTEGTVFIKMADIDGVTLXXXXXXXXXXXXXXQLTARFERDAIPLLDQL 79
           P  +  L  G +TEGTV   M DIDG                 +LTARFERDAIPLLDQL
Sbjct: 9   PVDLPGLFDGAATEGTVSTTMTDIDGAAAERQETDA-------ELTARFERDAIPLLDQL 61

Query: 80  YGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQ 139
           YGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQ
Sbjct: 62  YGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQ 121

Query: 140 PAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYAD 199
           P+EYPT+EITDWQLA+NAEHSSTGLRSAEVEALE+LPDTEIK ALQALPE+FRMAVYYAD
Sbjct: 122 PSEYPTEEITDWQLAANAEHSSTGLRSAEVEALESLPDTEIKAALQALPEDFRMAVYYAD 181

Query: 200 VEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFVRGEQAHQEVSS 255
           VEGFPYKEIAEIMDTPIGTVMSRLHRGR+QLR LLADVA++RGF+RG QA +EVSS
Sbjct: 182 VEGFPYKEIAEIMDTPIGTVMSRLHRGRKQLRELLADVARDRGFLRGAQAPEEVSS 237


>tr|A1UCQ1|A1UCQ1_MYCSK Tax_Id=189918 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium sp.]
          Length = 237

 Score =  373 bits (957), Expect = e-101
 Identities = 191/236 (80%), Positives = 204/236 (86%), Gaps = 7/236 (2%)

Query: 20  PASVATLSGGTSTEGTVFIKMADIDGVTLXXXXXXXXXXXXXXQLTARFERDAIPLLDQL 79
           P  +  L  G +TEGTV   M DIDG                 +LTARFERDAIPLLDQL
Sbjct: 9   PVDLPGLFDGAATEGTVSTTMTDIDGAAAERQETDA-------ELTARFERDAIPLLDQL 61

Query: 80  YGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQ 139
           YGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQ
Sbjct: 62  YGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQRQ 121

Query: 140 PAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYAD 199
           P+EYPT+EITDWQLA+NAEHSSTGLRSAEVEALE+LPDTEIK ALQALPE+FRMAVYYAD
Sbjct: 122 PSEYPTEEITDWQLAANAEHSSTGLRSAEVEALESLPDTEIKAALQALPEDFRMAVYYAD 181

Query: 200 VEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFVRGEQAHQEVSS 255
           VEGFPYKEIAEIMDTPIGTVMSRLHRGR+QLR LLADVA++RGF+RG QA +EVSS
Sbjct: 182 VEGFPYKEIAEIMDTPIGTVMSRLHRGRKQLRELLADVARDRGFLRGAQAPEEVSS 237


>tr|A1T600|A1T600_MYCVP Tax_Id=350058 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium vanbaalenii]
          Length = 248

 Score =  369 bits (946), Expect = e-100
 Identities = 192/243 (79%), Positives = 205/243 (84%), Gaps = 4/243 (1%)

Query: 17  PASPASVATLSGGTSTEGTVFIKMADIDG--VTLXXXXXXXXXXXXXXQLTARFERDAIP 74
           P+    V  + GG +TEGTVF  M DI G                   +LTARFERDAIP
Sbjct: 6   PSRSVHVLDVIGGAATEGTVFPTMTDITGSAAEATLDGEAPAREETDAELTARFERDAIP 65

Query: 75  LLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYR 134
           LLDQLYGGALRMTRNPADAEDLLQETMVKAY+GFRSFREGTNLKAWLYRILTNTYINSYR
Sbjct: 66  LLDQLYGGALRMTRNPADAEDLLQETMVKAYSGFRSFREGTNLKAWLYRILTNTYINSYR 125

Query: 135 KKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMA 194
           KKQRQPAEYPT+EITDWQLA+NAEHSSTGLRSAEVEALE LPD EIKEALQALP+EFRMA
Sbjct: 126 KKQRQPAEYPTEEITDWQLAANAEHSSTGLRSAEVEALELLPDNEIKEALQALPDEFRMA 185

Query: 195 VYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFVRGEQ--AHQE 252
           VYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLR LLA VA++RGF+RGEQ  A +E
Sbjct: 186 VYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRELLAGVARDRGFIRGEQVDAPEE 245

Query: 253 VSS 255
           V+S
Sbjct: 246 VTS 248


>tr|A4TFB2|A4TFB2_MYCGI Tax_Id=350054 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium gilvum]
          Length = 252

 Score =  365 bits (938), Expect = 2e-99
 Identities = 189/243 (77%), Positives = 207/243 (85%), Gaps = 4/243 (1%)

Query: 17  PASPASVATLSGGTSTEGTVFIKMADIDGVTLXXXXXXXXXXXXXX--QLTARFERDAIP 74
           P+    V  + GG +TEGTVF  M D +G+                  +LTARFERDAIP
Sbjct: 10  PSRSVFVLDVIGGAATEGTVFPTMTDTNGLAASPAPADAGEAREETDAELTARFERDAIP 69

Query: 75  LLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYR 134
           LLDQLYGGALRMTRNPADAEDLLQETMVKAY+GFRSFREGTNLKAWLYRILTNTYINSYR
Sbjct: 70  LLDQLYGGALRMTRNPADAEDLLQETMVKAYSGFRSFREGTNLKAWLYRILTNTYINSYR 129

Query: 135 KKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMA 194
           KKQRQPAEYPT+EITDWQLA+NAEH+STGLRSAEVEALE LPD+EIKEALQALPE+FRMA
Sbjct: 130 KKQRQPAEYPTEEITDWQLAANAEHTSTGLRSAEVEALELLPDSEIKEALQALPEDFRMA 189

Query: 195 VYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFVRGEQ--AHQE 252
           VYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VA++RGF+RGEQ  A +E
Sbjct: 190 VYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRELLAGVARDRGFIRGEQLEAPEE 249

Query: 253 VSS 255
           V+S
Sbjct: 250 VTS 252


>tr|A0QTP2|A0QTP2_MYCS2 Tax_Id=246196 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium smegmatis]
          Length = 219

 Score =  354 bits (908), Expect = 6e-96
 Identities = 176/186 (94%), Positives = 182/186 (97%)

Query: 63  QLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 122
           +LTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY
Sbjct: 25  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 84

Query: 123 RILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182
           RILTNTYINSYRKKQRQP+EYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 85  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 144

Query: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERG 242
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VA++RG
Sbjct: 145 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 204

Query: 243 FVRGEQ 248
           F+RG Q
Sbjct: 205 FIRGPQ 210


>tr|Q9XCD8|Q9XCD8_MYCSM Tax_Id=1772 (sigH)RecName: Full=RNA
           polymerase sigma factor;[Mycobacterium smegmatis]
          Length = 215

 Score =  354 bits (908), Expect = 6e-96
 Identities = 176/186 (94%), Positives = 182/186 (97%)

Query: 63  QLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 122
           +LTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY
Sbjct: 21  ELTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 80

Query: 123 RILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182
           RILTNTYINSYRKKQRQP+EYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 
Sbjct: 81  RILTNTYINSYRKKQRQPSEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKA 140

Query: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERG 242
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM+TPIGTVMSRLHRGRRQLR LLA VA++RG
Sbjct: 141 ALQALPEEFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGRRQLRDLLAGVARDRG 200

Query: 243 FVRGEQ 248
           F+RG Q
Sbjct: 201 FIRGPQ 206


>tr|Q0S2W8|Q0S2W8_RHOSR Tax_Id=101510 RecName: Full=RNA polymerase
           sigma factor;[Rhodococcus sp.]
          Length = 219

 Score =  333 bits (853), Expect = 1e-89
 Identities = 165/184 (89%), Positives = 174/184 (94%)

Query: 63  QLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 122
           +L ARFERDA+PLLDQLYG ALRMTRNPADAEDL+QET VKAY  FRSFREGTNLKAWLY
Sbjct: 17  ELIARFERDALPLLDQLYGAALRMTRNPADAEDLVQETYVKAYTAFRSFREGTNLKAWLY 76

Query: 123 RILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182
           RILTNTYINSYRKKQRQPA+YPTDEITDWQLA+ AEHSSTGLRSAEVEAL+ALPD +IKE
Sbjct: 77  RILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHSSTGLRSAEVEALDALPDDDIKE 136

Query: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERG 242
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGR+QLR LLADVA+ERG
Sbjct: 137 ALQALPEEFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLRGLLADVARERG 196

Query: 243 FVRG 246
           F RG
Sbjct: 197 FNRG 200


>tr|C1B1F4|C1B1F4_RHOOB Tax_Id=632772 (sigH)RecName: Full=RNA
           polymerase sigma factor;[Rhodococcus opacus]
          Length = 245

 Score =  333 bits (853), Expect = 1e-89
 Identities = 165/184 (89%), Positives = 174/184 (94%)

Query: 63  QLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 122
           +L ARFERDA+PLLDQLYG ALRMTRNPADAEDL+QET VKAY  FRSFREGTNLKAWLY
Sbjct: 43  ELIARFERDALPLLDQLYGAALRMTRNPADAEDLVQETYVKAYTAFRSFREGTNLKAWLY 102

Query: 123 RILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182
           RILTNTYINSYRKKQRQPA+YPTDEITDWQLA+ AEHSSTGLRSAEVEAL+ALPD +IKE
Sbjct: 103 RILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHSSTGLRSAEVEALDALPDDDIKE 162

Query: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERG 242
           ALQALPEEFRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGR+QLR LLADVA+ERG
Sbjct: 163 ALQALPEEFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLRGLLADVARERG 222

Query: 243 FVRG 246
           F RG
Sbjct: 223 FNRG 226


>tr|B1MF13|B1MF13_MYCA9 Tax_Id=561007 RecName: Full=RNA polymerase
           sigma factor;[Mycobacterium abscessus]
          Length = 235

 Score =  328 bits (842), Expect = 3e-88
 Identities = 169/232 (72%), Positives = 188/232 (81%), Gaps = 12/232 (5%)

Query: 20  PASVATLSGGTSTEGTVFIKM---ADIDGVTLXXXXXXXXXXXXXXQLTARFERDAIPLL 76
           P SV     G +TE T    M   A++ G+                +  ARFERDA+PLL
Sbjct: 7   PMSVPIRMVGVATERTAVTSMDSAAELPGLV---------HVETEAERVARFERDALPLL 57

Query: 77  DQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKK 136
           DQLYG ALRMTRNPADAEDL+QETMVKAYAGF +F+EGTNLKAWLYRILTNTYIN YRKK
Sbjct: 58  DQLYGAALRMTRNPADAEDLVQETMVKAYAGFGTFKEGTNLKAWLYRILTNTYINIYRKK 117

Query: 137 QRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVY 196
           QRQPAEYPT+EITDWQLA+NAEH+STGLRSAE+EAL+ LPD EIKEAL  LPEEFRMAVY
Sbjct: 118 QRQPAEYPTEEITDWQLAANAEHTSTGLRSAEIEALDGLPDDEIKEALNKLPEEFRMAVY 177

Query: 197 YADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFVRGEQ 248
           YADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLR LL++VAK+RGF+R  +
Sbjct: 178 YADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRDLLSEVAKDRGFLRNNE 229


>tr|C0ZX09|C0ZX09_RHOE4 Tax_Id=234621 (sigH)RecName: Full=RNA
           polymerase sigma factor;[Rhodococcus erythropolis]
          Length = 232

 Score =  323 bits (829), Expect = 9e-87
 Identities = 160/183 (87%), Positives = 171/183 (93%)

Query: 63  QLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 122
           +L ARFERDA+PLLDQLYG ALRMTRNPADAEDL+QET VKAY  FRSFR GTNLKAWLY
Sbjct: 31  ELIARFERDALPLLDQLYGAALRMTRNPADAEDLVQETYVKAYTAFRSFRAGTNLKAWLY 90

Query: 123 RILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182
           RILTNTYINSYRKKQRQPA+YPTDEITDWQLA+ AEH+STGLRSAEVEAL+ALPD +IK 
Sbjct: 91  RILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHTSTGLRSAEVEALDALPDDDIKA 150

Query: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERG 242
           ALQ+LPEEFRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGR+QLR LLADVAK+RG
Sbjct: 151 ALQSLPEEFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLRGLLADVAKDRG 210

Query: 243 FVR 245
           F R
Sbjct: 211 FNR 213


>tr|C3JG40|C3JG40_RHOER Tax_Id=596309 RecName: Full=RNA polymerase
           sigma factor;[Rhodococcus erythropolis SK121]
          Length = 232

 Score =  323 bits (829), Expect = 9e-87
 Identities = 160/183 (87%), Positives = 171/183 (93%)

Query: 63  QLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 122
           +L ARFERDA+PLLDQLYG ALRMTRNPADAEDL+QET VKAY  FRSFR GTNLKAWLY
Sbjct: 31  ELIARFERDALPLLDQLYGAALRMTRNPADAEDLVQETYVKAYTAFRSFRAGTNLKAWLY 90

Query: 123 RILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182
           RILTNTYINSYRKKQRQPA+YPTDEITDWQLA+ AEH+STGLRSAEVEAL+ALPD +IK 
Sbjct: 91  RILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHTSTGLRSAEVEALDALPDDDIKA 150

Query: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERG 242
           ALQ+LPEEFRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGR+QLR LLADVAK+RG
Sbjct: 151 ALQSLPEEFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLRGLLADVAKDRG 210

Query: 243 FVR 245
           F R
Sbjct: 211 FNR 213


>tr|Q5YQV6|Q5YQV6_NOCFA Tax_Id=37329 RecName: Full=RNA polymerase
           sigma factor;[Nocardia farcinica]
          Length = 217

 Score =  322 bits (825), Expect = 3e-86
 Identities = 160/191 (83%), Positives = 176/191 (92%), Gaps = 2/191 (1%)

Query: 63  QLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 122
           +L  RFERDA+PLLDQLYG ALRMTRNPADAEDL+QET VKA+ GF+SF+EGTNL+AWLY
Sbjct: 27  ELAQRFERDALPLLDQLYGAALRMTRNPADAEDLVQETYVKAFQGFKSFKEGTNLRAWLY 86

Query: 123 RILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182
           RILTNTYINSYRKKQRQPA+YPTDEITDWQLA+ AEH+STGLRSAEVEAL+ALPD +IK 
Sbjct: 87  RILTNTYINSYRKKQRQPAQYPTDEITDWQLAATAEHTSTGLRSAEVEALDALPDDDIKA 146

Query: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERG 242
           ALQ LPEEFRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGR+QL+ LLADVA+ERG
Sbjct: 147 ALQELPEEFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLKGLLADVARERG 206

Query: 243 FVRGEQAHQEV 253
           F R E+  QEV
Sbjct: 207 FNRSER--QEV 215


>tr|D0LF23|D0LF23_GORB4 Tax_Id=526226 SubName: Full=RNA polymerase
           sigma-70 factor;[Gordonia bronchialis]
          Length = 295

 Score =  322 bits (825), Expect = 3e-86
 Identities = 158/183 (86%), Positives = 169/183 (92%)

Query: 63  QLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 122
           QLT RFERDA+PLLDQ+YG ALRMTRNP+DAEDL+QET VKA+  F SFREGTNLKAWLY
Sbjct: 96  QLTERFERDALPLLDQMYGAALRMTRNPSDAEDLVQETYVKAFTAFASFREGTNLKAWLY 155

Query: 123 RILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182
           RILTNTYIN YRKKQRQPA+YPTDEITDWQLA+ AEH+STGLRSAE+EAL+ALPD EIK 
Sbjct: 156 RILTNTYINGYRKKQRQPAQYPTDEITDWQLAATAEHTSTGLRSAEIEALDALPDDEIKA 215

Query: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERG 242
           ALQ LPEEFRMAVYYADVEG PYKEIAEIMDTPIGTVMSRLHRGRRQLR LLADVA+ERG
Sbjct: 216 ALQELPEEFRMAVYYADVEGLPYKEIAEIMDTPIGTVMSRLHRGRRQLRELLADVARERG 275

Query: 243 FVR 245
           F R
Sbjct: 276 FNR 278


>tr|C2ARM4|C2ARM4_TSUPA Tax_Id=521096 RecName: Full=RNA polymerase
           sigma factor;[Tsukamurella paurometabola DSM 20162]
          Length = 226

 Score =  320 bits (820), Expect = 1e-85
 Identities = 158/187 (84%), Positives = 171/187 (91%)

Query: 63  QLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 122
           QLTARFE +A+PLLDQLYG ALRMTRNPADAEDL+QET VKAY+ FRSFR+GTNLKAWLY
Sbjct: 28  QLTARFEAEALPLLDQLYGAALRMTRNPADAEDLVQETYVKAYSAFRSFRKGTNLKAWLY 87

Query: 123 RILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182
           RILTNTYIN YRKKQRQPA+YPTDEITDWQLA+ AEHSSTGLRSAE+EAL+ALPD EIK+
Sbjct: 88  RILTNTYINGYRKKQRQPAQYPTDEITDWQLAATAEHSSTGLRSAEIEALDALPDDEIKQ 147

Query: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERG 242
           AL  LPE+FRMAVYYADVEGFPYKEIAEIM TPIGTVMSRLHRGRRQLRT L  VA+ERG
Sbjct: 148 ALAKLPEDFRMAVYYADVEGFPYKEIAEIMGTPIGTVMSRLHRGRRQLRTELEGVARERG 207

Query: 243 FVRGEQA 249
           F+R   A
Sbjct: 208 FLRAGAA 214


>tr|A3RDV8|A3RDV8_RHOOP Tax_Id=37919 RecName: Full=RNA polymerase
           sigma factor; Flags: Fragment;[Rhodococcus opacus]
          Length = 169

 Score =  301 bits (771), Expect = 5e-80
 Identities = 151/168 (89%), Positives = 158/168 (94%)

Query: 79  LYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILTNTYINSYRKKQR 138
           LYG ALRMTRNPADAEDL+QET VKAY  FRSFREGTNLKAWLYRILTNTYINSYRKKQR
Sbjct: 1   LYGAALRMTRNPADAEDLVQETYVKAYTAFRSFREGTNLKAWLYRILTNTYINSYRKKQR 60

Query: 139 QPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYA 198
           QPA+YPTDEITD QLA+ AEHSSTGLRSAEVEAL+ALPD +IKEALQALPEEFRMAVYYA
Sbjct: 61  QPAQYPTDEITDRQLAATAEHSSTGLRSAEVEALDALPDDDIKEALQALPEEFRMAVYYA 120

Query: 199 DVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFVRG 246
           DVEGFPYKEIAEIM TPIGTVMSRLHRGR+QLR LLADVA+ERGF RG
Sbjct: 121 DVEGFPYKEIAEIMGTPIGTVMSRLHRGRKQLRGLLADVARERGFNRG 168


>tr|C6WJ20|C6WJ20_ACTMD Tax_Id=446462 RecName: Full=RNA polymerase
           sigma factor;[Actinosynnema mirum]
          Length = 219

 Score =  300 bits (767), Expect = 1e-79
 Identities = 150/192 (78%), Positives = 166/192 (86%), Gaps = 2/192 (1%)

Query: 63  QLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 122
           Q  ARFERDA+P+LDQLY  ALRMTRNPADAEDL+QET +KAYA F SF EGTNLKAWLY
Sbjct: 28  QRAARFERDAMPMLDQLYSAALRMTRNPADAEDLVQETYLKAYAAFASFSEGTNLKAWLY 87

Query: 123 RILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182
           RILTNTYIN YRKKQRQP + PTDEITDWQLA    H+S+GLRSAEVEA++ LPDT++KE
Sbjct: 88  RILTNTYINGYRKKQRQPLQQPTDEITDWQLAQAESHTSSGLRSAEVEAMDRLPDTDVKE 147

Query: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERG 242
           ALQ LPEEFR+AVY ADVEGF YKEIA+IM TPIGTVMSRLHRGRRQLR  LAD A+ERG
Sbjct: 148 ALQRLPEEFRIAVYLADVEGFAYKEIADIMGTPIGTVMSRLHRGRRQLREQLADTARERG 207

Query: 243 FVRGEQAHQEVS 254
           F+RG Q  QEV+
Sbjct: 208 FLRGGQ--QEVA 217


>tr|C0U935|C0U935_9ACTO Tax_Id=526225 RecName: Full=RNA polymerase
           sigma factor;[Geodermatophilus obscurus DSM 43160]
          Length = 236

 Score =  293 bits (750), Expect = 1e-77
 Identities = 146/187 (78%), Positives = 163/187 (87%), Gaps = 3/187 (1%)

Query: 66  ARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRIL 125
           ARFERDA+P LDQLY  ALRMTRNPADAEDL+QET VKAY+ F  F EGTNLKAWLYRIL
Sbjct: 47  ARFERDALPYLDQLYPAALRMTRNPADAEDLVQETFVKAYSAFHQFAEGTNLKAWLYRIL 106

Query: 126 TNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQ 185
           TNTYINSYRKKQRQP +YPTD++ DWQL +  EHSS+GLRSAE+EAL+ LPD++IKEALQ
Sbjct: 107 TNTYINSYRKKQRQPQQYPTDQVQDWQLYAAEEHSSSGLRSAEIEALDHLPDSDIKEALQ 166

Query: 186 ALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFVR 245
            LPE+FR+AVY ADVEGF YKEIAEIM TPIGTVMSRLHRGRR L+ LLAD A+ERGFVR
Sbjct: 167 QLPEDFRLAVYLADVEGFAYKEIAEIMGTPIGTVMSRLHRGRRGLQKLLADYARERGFVR 226

Query: 246 ---GEQA 249
              GE+A
Sbjct: 227 AGAGEEA 233


>tr|C7MXX0|C7MXX0_SACVD Tax_Id=471857 SubName: Full=RNA polymerase
           sigma-70 factor, TIGR02947 family;[Saccharomonospora
           viridis]
          Length = 216

 Score =  292 bits (748), Expect = 2e-77
 Identities = 140/189 (74%), Positives = 164/189 (86%)

Query: 63  QLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 122
           +L  RFER+A+PL+DQLY  A+RMTRNPADAEDL+QET ++AYA F SF+EGTNLKAW+Y
Sbjct: 24  ELAERFEREAMPLVDQLYSAAMRMTRNPADAEDLVQETYLRAYAAFSSFKEGTNLKAWMY 83

Query: 123 RILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182
           RILTNTYIN YRK+QRQP + PT+EITDWQLA    H+S GLRSAEVEAL+ LPDT++K 
Sbjct: 84  RILTNTYINGYRKRQRQPVQQPTEEITDWQLAKAESHTSAGLRSAEVEALDKLPDTDVKA 143

Query: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERG 242
           ALQ LPE+FR+AVY ADVEGF YKEIAEIM+TPIGTVMSRLHRGR QLR+LLADVA+ERG
Sbjct: 144 ALQQLPEDFRLAVYLADVEGFAYKEIAEIMNTPIGTVMSRLHRGRGQLRSLLADVARERG 203

Query: 243 FVRGEQAHQ 251
           F+R  Q  +
Sbjct: 204 FIRSGQQRE 212


>tr|A4FNH5|A4FNH5_SACEN Tax_Id=405948 (sigR)RecName: Full=RNA
           polymerase sigma factor;[Saccharopolyspora erythraea]
          Length = 229

 Score =  286 bits (731), Expect = 2e-75
 Identities = 142/190 (74%), Positives = 162/190 (85%), Gaps = 2/190 (1%)

Query: 66  ARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRIL 125
           ARFERDA+PLLDQLYG ALRMTRN  DAEDL+QET +KAY+ F+SF +GTNLKAWLYRIL
Sbjct: 41  ARFERDAMPLLDQLYGAALRMTRNAPDAEDLVQETYLKAYSAFKSFAQGTNLKAWLYRIL 100

Query: 126 TNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQ 185
           TNTYIN YRK+QRQP + PTDEI DWQLA    H+S+GLRSAEVEAL+ LPDT++K ALQ
Sbjct: 101 TNTYINGYRKRQRQPQQQPTDEIADWQLAQAENHTSSGLRSAEVEALDRLPDTDVKNALQ 160

Query: 186 ALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFVR 245
            L EEFRM VY ADVEGF YKEIAEIM TPIGTVMSRLHRGRRQLR +L DVA++RGF+R
Sbjct: 161 QLAEEFRMVVYLADVEGFAYKEIAEIMGTPIGTVMSRLHRGRRQLRDMLTDVARDRGFLR 220

Query: 246 GEQAHQEVSS 255
             +  +EVS+
Sbjct: 221 --ENKREVST 228


>tr|C4DSE5|C4DSE5_9ACTO Tax_Id=446470 SubName: Full=RNA polymerase,
           sigma subunit, ECF family;[Stackebrandtia nassauensis
           DSM 44728]
          Length = 262

 Score =  283 bits (724), Expect = 1e-74
 Identities = 137/189 (72%), Positives = 162/189 (85%), Gaps = 1/189 (0%)

Query: 66  ARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRIL 125
           ARFERDA+PL+DQLYGGALRMTRNP DAEDL+QET +KA++ F  F+ GTNL+AW+YRIL
Sbjct: 74  ARFERDAMPLVDQLYGGALRMTRNPQDAEDLVQETYLKAFSAFHQFKAGTNLRAWMYRIL 133

Query: 126 TNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQ 185
           TNTYINSYRK++RQP + PT+EITDWQL S   H+STGLRSAE EAL+ LPD+++K+AL 
Sbjct: 134 TNTYINSYRKRKRQPVQSPTEEITDWQLVSAESHTSTGLRSAETEALDRLPDSDVKDALA 193

Query: 186 ALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFVR 245
            LPEEFR+AVY ADVEGF YKEIAEIM TPIGTVMSRLHRGRRQLR +LA+ A +RGF  
Sbjct: 194 RLPEEFRLAVYLADVEGFAYKEIAEIMGTPIGTVMSRLHRGRRQLRDMLAEYAAQRGFSA 253

Query: 246 GEQAHQEVS 254
            +  H+EVS
Sbjct: 254 SDD-HEEVS 261


>tr|C8XEF1|C8XEF1_NAKMY Tax_Id=479431 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Nakamurella
           multipartita]
          Length = 209

 Score =  281 bits (720), Expect = 4e-74
 Identities = 136/188 (72%), Positives = 160/188 (85%)

Query: 64  LTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYR 123
           L+ RF   A+PL+DQLY  ALRMTRNPADAEDL+QET +KA++ F+SF +GTNL+AWLYR
Sbjct: 9   LSQRFTEQAMPLIDQLYAAALRMTRNPADAEDLVQETYLKAFSAFKSFTQGTNLRAWLYR 68

Query: 124 ILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEA 183
           ILTNTYIN YRK+QRQP    TDEITDWQLAS   H+STGLRSAE++AL+ LPD+++KEA
Sbjct: 69  ILTNTYINGYRKRQRQPTVTATDEITDWQLASAESHTSTGLRSAEMDALDRLPDSDVKEA 128

Query: 184 LQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGF 243
           LQ LPE+FR+AVY ADVEGF YKEIAEIM TP+GTVMSRLHRGRRQLR LL D A ERGF
Sbjct: 129 LQELPEDFRLAVYLADVEGFSYKEIAEIMGTPLGTVMSRLHRGRRQLRDLLTDYATERGF 188

Query: 244 VRGEQAHQ 251
           +R + A+Q
Sbjct: 189 LRNQSANQ 196


>tr|A0LSA1|A0LSA1_ACIC1 Tax_Id=351607 RecName: Full=RNA polymerase
           sigma factor;[Acidothermus cellulolyticus]
          Length = 212

 Score =  281 bits (718), Expect = 6e-74
 Identities = 140/185 (75%), Positives = 158/185 (85%), Gaps = 1/185 (0%)

Query: 63  QLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 122
           Q T RFERDA+PL+DQLY  ALRMTRNPADAEDL+QET VKA+A F  F EGTNLKAWLY
Sbjct: 10  QRTVRFERDALPLIDQLYSAALRMTRNPADAEDLVQETFVKAFAAFDQFEEGTNLKAWLY 69

Query: 123 RILTNTYINSYRKKQRQPAEYPT-DEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIK 181
           RILTNTYINSYRKKQR+P +    D++ DWQLA  AEH+S+GLRSAE EAL+ LPD+++K
Sbjct: 70  RILTNTYINSYRKKQREPRQTQGGDDLEDWQLARAAEHTSSGLRSAEAEALDHLPDSDVK 129

Query: 182 EALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKER 241
           EALQALPEEFR+AVY ADVEGF YKEIAEIM TPIGTVMSRLHRGRR LR  L + A+ER
Sbjct: 130 EALQALPEEFRLAVYLADVEGFSYKEIAEIMGTPIGTVMSRLHRGRRALRAALENYARER 189

Query: 242 GFVRG 246
           GF+RG
Sbjct: 190 GFLRG 194


>tr|C4EDP8|C4EDP8_STRRS Tax_Id=479432 RecName: Full=RNA polymerase
           sigma factor;[Streptosporangium roseum DSM 43021]
          Length = 240

 Score =  278 bits (711), Expect = 4e-73
 Identities = 137/187 (73%), Positives = 155/187 (82%)

Query: 63  QLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 122
           Q + RFERD +P LDQLY  ALRMTRNPADAEDLLQET  KA+A F  F+EGTNLKAWLY
Sbjct: 53  QRSTRFERDVMPYLDQLYSAALRMTRNPADAEDLLQETFAKAFASFHQFQEGTNLKAWLY 112

Query: 123 RILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182
           RILTNT+INSYRKKQR+P +   +EI DWQLA    H+S GL+SAE+EALE LPD+++K+
Sbjct: 113 RILTNTFINSYRKKQREPKQSGAEEIEDWQLARAESHTSAGLKSAEIEALEHLPDSDVKQ 172

Query: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERG 242
           AL ALPEEFR+AVY ADVEGFPYKEIA+IM TPIGTVMSRLHRGRRQLRT L D A+ERG
Sbjct: 173 ALAALPEEFRIAVYLADVEGFPYKEIADIMGTPIGTVMSRLHRGRRQLRTQLEDYARERG 232

Query: 243 FVRGEQA 249
            V  E A
Sbjct: 233 LVPAEGA 239


>tr|A4XB46|A4XB46_SALTO Tax_Id=369723 RecName: Full=RNA polymerase
           sigma factor;[Salinispora tropica]
          Length = 204

 Score =  277 bits (709), Expect = 7e-73
 Identities = 135/184 (73%), Positives = 151/184 (82%)

Query: 66  ARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRIL 125
           ARFERDA+P +DQLY   LRMTRNPADAEDL+QET +KAYA F  F +GTNLKAWLYRIL
Sbjct: 13  ARFERDAMPFVDQLYAAGLRMTRNPADAEDLVQETYLKAYAAFHQFEQGTNLKAWLYRIL 72

Query: 126 TNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQ 185
           TNTYINSYR++QRQP + PTDEITDWQLA    H+S+GLRSAE EAL+ LPD++IK+ALQ
Sbjct: 73  TNTYINSYRRRQRQPIQAPTDEITDWQLAEAESHTSSGLRSAETEALDRLPDSDIKQALQ 132

Query: 186 ALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFVR 245
            LPEEFR+AVY  DVEGF YKE+AEIM TPIGTVMSRLHRGRR LR LL   A ERGF  
Sbjct: 133 QLPEEFRLAVYLTDVEGFSYKEVAEIMGTPIGTVMSRLHRGRRNLRNLLEQYAAERGFSS 192

Query: 246 GEQA 249
              A
Sbjct: 193 ASSA 196


>tr|A8M3C2|A8M3C2_SALAI Tax_Id=391037 RecName: Full=RNA polymerase
           sigma factor;[Salinispora arenicola]
          Length = 268

 Score =  276 bits (706), Expect = 2e-72
 Identities = 134/184 (72%), Positives = 151/184 (82%)

Query: 66  ARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRIL 125
           ARFERDA+P +DQLY   LRMTRNPADAEDL+QET +KAYA F  F +GTNLKAWLYRIL
Sbjct: 77  ARFERDAMPFVDQLYAAGLRMTRNPADAEDLVQETYLKAYAAFHQFEQGTNLKAWLYRIL 136

Query: 126 TNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQ 185
           TNTYINSYR++QRQP + PT+EITDWQLA    H+S+GLRSAE EAL+ LPD++IK+ALQ
Sbjct: 137 TNTYINSYRRRQRQPIQAPTEEITDWQLAEAESHTSSGLRSAETEALDRLPDSDIKQALQ 196

Query: 186 ALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFVR 245
            LPEEFR+AVY  DVEGF YKE+AEIM TPIGTVMSRLHRGRR LR LL   A ERGF  
Sbjct: 197 QLPEEFRLAVYLTDVEGFSYKEVAEIMGTPIGTVMSRLHRGRRNLRKLLEQYAAERGFTS 256

Query: 246 GEQA 249
              A
Sbjct: 257 ASSA 260


>tr|A8L2M4|A8L2M4_FRASN Tax_Id=298653 RecName: Full=RNA polymerase
           sigma factor;[Frankia sp.]
          Length = 270

 Score =  276 bits (705), Expect = 2e-72
 Identities = 137/187 (73%), Positives = 153/187 (81%)

Query: 66  ARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRIL 125
           ARFERDA+P LDQLY  ALRMTRNPADAEDL+QET VKA+A F  F+EGTNLKAWLYRIL
Sbjct: 80  ARFERDALPFLDQLYAAALRMTRNPADAEDLVQETFVKAFAAFHQFQEGTNLKAWLYRIL 139

Query: 126 TNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQ 185
           TNT+IN+YRK+QRQP + PT+++ DWQLA    H+STGL+SAE EALE LPD++I EALQ
Sbjct: 140 TNTFINTYRKRQRQPLQSPTEQVEDWQLAEAESHTSTGLKSAEAEALEHLPDSDITEALQ 199

Query: 186 ALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFVR 245
           ALPE+FRMAVY ADVEGF YKEIAEIM TPIGTVMSRLHRGRR LR  L   A ERG V 
Sbjct: 200 ALPEDFRMAVYLADVEGFSYKEIAEIMGTPIGTVMSRLHRGRRGLRKSLEQYALERGLVP 259

Query: 246 GEQAHQE 252
              A  E
Sbjct: 260 AGSAENE 266


>tr|B5HN42|B5HN42_9ACTO Tax_Id=463191 RecName: Full=RNA polymerase
           sigma factor;[Streptomyces sviceus ATCC 29083]
          Length = 227

 Score =  274 bits (701), Expect = 6e-72
 Identities = 135/180 (75%), Positives = 151/180 (83%)

Query: 65  TARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRI 124
           TARFERDA+  LDQ+Y  ALRMTRNPADAEDL+QET  KAYA F  FREGTNLKAWLYRI
Sbjct: 33  TARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREGTNLKAWLYRI 92

Query: 125 LTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEAL 184
           LTNT+INSYRKKQR+P     +EI DWQLA    H STGLRSAE +AL+ LPD+++KEAL
Sbjct: 93  LTNTFINSYRKKQREPQRSAAEEIEDWQLARAESHMSTGLRSAESQALDHLPDSDVKEAL 152

Query: 185 QALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFV 244
           QA+PEEFR+AVY ADVEGF YKEIA+IM TPIGTVMSRLHRGRRQLR +L D A+ERG V
Sbjct: 153 QAIPEEFRIAVYLADVEGFAYKEIADIMGTPIGTVMSRLHRGRRQLRGMLEDYARERGLV 212


>tr|Q47SI1|Q47SI1_THEFY Tax_Id=269800 SubName: Full=RNA polymerase
           sigma-70 factor, ECF subfamily;[Thermobifida fusca]
          Length = 256

 Score =  274 bits (700), Expect = 8e-72
 Identities = 133/179 (74%), Positives = 152/179 (84%)

Query: 66  ARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRIL 125
           ARFERDA+PLLDQLY  ALRMTRNP DAEDL+QET  KA+  F  F+EGTNLKAWLYRIL
Sbjct: 60  ARFERDAMPLLDQLYSAALRMTRNPTDAEDLVQETFTKAFGSFHQFKEGTNLKAWLYRIL 119

Query: 126 TNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQ 185
           TNT+INSYRKKQR+P +  T++I DWQLA  A H+S+GL+SAE EALE LPDT++K ALQ
Sbjct: 120 TNTFINSYRKKQREPRQAGTEDIEDWQLARAASHTSSGLKSAEAEALEHLPDTDVKRALQ 179

Query: 186 ALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFV 244
            LPE+FR+AVY  DVEGF YKE AEIMDTPIGTVMSRLHRGRRQLR+LL + A ERGF+
Sbjct: 180 ELPEDFRIAVYLVDVEGFAYKEAAEIMDTPIGTVMSRLHRGRRQLRSLLEEYALERGFL 238


>tr|C4RQX4|C4RQX4_9ACTO Tax_Id=219305 RecName: Full=RNA polymerase
           sigma factor;[Micromonospora sp. ATCC 39149]
          Length = 207

 Score =  273 bits (699), Expect = 1e-71
 Identities = 132/178 (74%), Positives = 149/178 (83%)

Query: 66  ARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRIL 125
           ARFERDA+P +DQLY   LRMTRNPADAEDL+QET +KAY  F  F +GTNLKAWLYRIL
Sbjct: 13  ARFERDAMPFVDQLYAAGLRMTRNPADAEDLVQETYLKAYVAFHQFEQGTNLKAWLYRIL 72

Query: 126 TNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQ 185
           TNTYINSYRK+QRQP + PT+EITDWQLA    H+S+GLRSAE EAL+ LPD+++KEALQ
Sbjct: 73  TNTYINSYRKRQRQPIQAPTEEITDWQLAEVESHTSSGLRSAETEALDRLPDSDVKEALQ 132

Query: 186 ALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGF 243
            LPEEFR+AVY  DVEGF YKE+A+IM TPIGTVMSRLHRGRR LR LL   A ERGF
Sbjct: 133 QLPEEFRLAVYLTDVEGFSYKEVADIMGTPIGTVMSRLHRGRRNLRKLLEGYAAERGF 190


>tr|Q0RD39|Q0RD39_FRAAA Tax_Id=326424 RecName: Full=RNA polymerase
           sigma factor;[Frankia alni]
          Length = 215

 Score =  271 bits (694), Expect = 4e-71
 Identities = 135/187 (72%), Positives = 153/187 (81%)

Query: 66  ARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRIL 125
           ARFERDA+P LDQLY  ALRMTRNPADAEDL+QET VKA+A F  F+EGTNLKAWLYRIL
Sbjct: 25  ARFERDALPYLDQLYAAALRMTRNPADAEDLVQETFVKAFAAFHQFQEGTNLKAWLYRIL 84

Query: 126 TNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQ 185
           TNT+IN+YRK+QRQP + PT+++ DWQLA    H+S+GL+SAE EALE LPD++IK+ALQ
Sbjct: 85  TNTFINTYRKRQRQPLQSPTEQVEDWQLAEAESHTSSGLKSAETEALEHLPDSDIKDALQ 144

Query: 186 ALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFVR 245
           ALPE+FRMAVY ADVEGF YKEIAEIM TPIGTVMSRLHRGRR LR  L   A  RG V 
Sbjct: 145 ALPEDFRMAVYLADVEGFAYKEIAEIMGTPIGTVMSRLHRGRRGLRKSLEQYAAGRGLVG 204

Query: 246 GEQAHQE 252
              A  E
Sbjct: 205 AGSADGE 211


>tr|B4V945|B4V945_9ACTO Tax_Id=465541 RecName: Full=RNA polymerase
           sigma factor;[Streptomyces sp. Mg1]
          Length = 214

 Score =  271 bits (694), Expect = 4e-71
 Identities = 134/179 (74%), Positives = 150/179 (83%)

Query: 66  ARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRIL 125
           ARFERDA+  LDQ+Y  ALRMTRNPADAEDL+QET  KAYA F  FREGTNLKAWLYRIL
Sbjct: 21  ARFERDALGYLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREGTNLKAWLYRIL 80

Query: 126 TNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQ 185
           TNT+INSYRKKQR+P     +EI DWQLA    H STGLRSAE +AL+ LPD+++KEALQ
Sbjct: 81  TNTFINSYRKKQREPQRSAAEEIEDWQLARAESHMSTGLRSAESQALDHLPDSDVKEALQ 140

Query: 186 ALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFV 244
           A+PEEFR+AVY ADVEGF YKEIA+IM TPIGTVMSRLHRGRRQLR +L D A+ERG V
Sbjct: 141 AIPEEFRIAVYLADVEGFAYKEIADIMGTPIGTVMSRLHRGRRQLRGMLEDYARERGLV 199


>tr|O87834|O87834_STRCO Tax_Id=1902 (sigR)RecName: Full=RNA
           polymerase sigma factor;[Streptomyces coelicolor]
          Length = 227

 Score =  270 bits (691), Expect = 9e-71
 Identities = 132/180 (73%), Positives = 151/180 (83%)

Query: 65  TARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRI 124
           +ARFERDA+  LDQ+Y  ALRMTRNPADAEDL+QET  KAYA F  FREGTNLKAWLYRI
Sbjct: 33  SARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREGTNLKAWLYRI 92

Query: 125 LTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEAL 184
           LTNT+INSYRKKQR+P     +EI DWQLA    H STGLRSAE +AL+ LPD+++K+AL
Sbjct: 93  LTNTFINSYRKKQREPQRSAAEEIEDWQLARAESHMSTGLRSAESQALDHLPDSDVKQAL 152

Query: 185 QALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFV 244
           QA+PEEFR+AVY ADVEGF YKEIA+IM TPIGTVMSRLHRGRRQLR +L D A++RG V
Sbjct: 153 QAIPEEFRIAVYLADVEGFAYKEIADIMGTPIGTVMSRLHRGRRQLRGMLEDYARDRGLV 212


>tr|D1ACI2|D1ACI2_THECU Tax_Id=471852 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Thermomonospora curvata
           DSM 43183]
          Length = 223

 Score =  270 bits (691), Expect = 9e-71
 Identities = 132/183 (72%), Positives = 151/183 (82%)

Query: 63  QLTARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLY 122
           Q   RF+RD +P LDQLY  ALRMTRNPADAEDL+QET  KA+A F  F+EGTNLKAWLY
Sbjct: 36  QRQERFQRDVLPFLDQLYSAALRMTRNPADAEDLVQETFAKAFASFHQFKEGTNLKAWLY 95

Query: 123 RILTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKE 182
           RILTNT+INSYRK+QRQP +  T+EI DWQLA    H+S+GL+SAE EALE LPD+++K 
Sbjct: 96  RILTNTFINSYRKRQRQPQQSATEEIEDWQLARAESHTSSGLKSAEAEALEHLPDSDVKT 155

Query: 183 ALQALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERG 242
           ALQ LPEEFR+AVY ADVEGF YKEIA+IM TPIGTVMSRLHRGRRQLR+ L D A+ERG
Sbjct: 156 ALQELPEEFRIAVYLADVEGFAYKEIADIMGTPIGTVMSRLHRGRRQLRSRLEDYARERG 215

Query: 243 FVR 245
             R
Sbjct: 216 LTR 218


>tr|Q82IU5|Q82IU5_STRAW Tax_Id=33903 (sig22)RecName: Full=RNA
           polymerase sigma factor;[Streptomyces avermitilis]
          Length = 227

 Score =  270 bits (689), Expect = 1e-70
 Identities = 132/180 (73%), Positives = 150/180 (83%)

Query: 65  TARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRI 124
           +ARFERDA+  LDQ+Y  ALRMTRNPADAEDL+QET  KAYA F  FREGTNLKAWLYRI
Sbjct: 33  SARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREGTNLKAWLYRI 92

Query: 125 LTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEAL 184
           LTNT+INSYRKKQR+P     +EI DWQLA    H STGLRSAE +AL+ LPD+++K AL
Sbjct: 93  LTNTFINSYRKKQREPQRSAAEEIEDWQLARAESHMSTGLRSAESQALDHLPDSDVKSAL 152

Query: 185 QALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFV 244
           QA+PEEFR+AVY ADVEGF YKEIA+IM TPIGTVMSRLHRGRRQLR +L D A++RG V
Sbjct: 153 QAIPEEFRIAVYLADVEGFAYKEIADIMGTPIGTVMSRLHRGRRQLRGMLEDYARDRGLV 212


>tr|C9ZAE8|C9ZAE8_STRSW Tax_Id=680198 (sigR)SubName: Full=Putative
           oxidative stress sigma factor;[Streptomyces scabies]
          Length = 223

 Score =  270 bits (689), Expect = 1e-70
 Identities = 132/180 (73%), Positives = 150/180 (83%)

Query: 65  TARFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRI 124
           +ARFERDA+  LDQ+Y  ALRMTRNPADAEDL+QET  KAYA F  FREGTNLKAWLYRI
Sbjct: 29  SARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREGTNLKAWLYRI 88

Query: 125 LTNTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEAL 184
           LTNT+INSYRKKQR+P     +EI DWQLA    H STGLRSAE +AL+ LPD+++K AL
Sbjct: 89  LTNTFINSYRKKQREPQRSAAEEIEDWQLARAESHMSTGLRSAESQALDHLPDSDVKSAL 148

Query: 185 QALPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFV 244
           QA+PEEFR+AVY ADVEGF YKEIA+IM TPIGTVMSRLHRGRRQLR +L D A++RG V
Sbjct: 149 QAIPEEFRIAVYLADVEGFAYKEIADIMGTPIGTVMSRLHRGRRQLRGMLEDYARDRGLV 208


>tr|C1YU34|C1YU34_NOCDA Tax_Id=446468 RecName: Full=RNA polymerase
           sigma factor;[Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 224

 Score =  270 bits (689), Expect = 1e-70
 Identities = 129/183 (70%), Positives = 151/183 (82%)

Query: 67  RFERDAIPLLDQLYGGALRMTRNPADAEDLLQETMVKAYAGFRSFREGTNLKAWLYRILT 126
           RFERD +P LDQLY  ALRMTRNPADAEDL+QET  KA+  F  FR+GTNLKAWLYRILT
Sbjct: 16  RFERDVLPFLDQLYSAALRMTRNPADAEDLVQETFAKAFGSFHQFRQGTNLKAWLYRILT 75

Query: 127 NTYINSYRKKQRQPAEYPTDEITDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQA 186
           NT+INSYRKKQR+P +  T+++ DWQLA  A H++ GL+SAE EALE LPDT++K ALQ 
Sbjct: 76  NTFINSYRKKQREPKQAGTEDVEDWQLAQAASHTAAGLKSAEAEALEHLPDTDVKRALQE 135

Query: 187 LPEEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGRRQLRTLLADVAKERGFVRG 246
           LPE+FR+AVY ADVEGF YKE+AEIM TPIGTVMSRLHRGRRQLR++L + A ERGF+  
Sbjct: 136 LPEDFRIAVYLADVEGFAYKEVAEIMGTPIGTVMSRLHRGRRQLRSMLEEYAVERGFLPA 195

Query: 247 EQA 249
             A
Sbjct: 196 RAA 198


  Database: Amellifera_nr
    Posted date:  Feb 5, 2010  5:10 AM
  Number of letters in database: 3,846,993,858
  Number of sequences in database:  11,275,203
  
Lambda     K      H
   0.315    0.131    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11275203
Number of Hits to DB: 1,685,107,602
Number of extensions: 61744404
Number of successful extensions: 182508
Number of sequences better than 10.0: 8478
Number of HSP's gapped: 177886
Number of HSP's successfully gapped: 8482
Length of query: 255
Length of database: 3,846,993,858
Length adjustment: 134
Effective length of query: 121
Effective length of database: 2,336,116,656
Effective search space: 282670115376
Effective search space used: 282670115376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)