BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MMAR_1474
         (262 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,275,203 sequences; 3,846,993,858 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|B2HGD9|B2HGD9_MYCMM Tax_Id=216594 (nuoJ)SubName: Full=NADH de...   421   e-116
tr|A0PR47|A0PR47_MYCUA Tax_Id=362242 (nuoJ)SubName: Full=NADH de...   421   e-116
tr|A0QJV6|A0QJV6_MYCA1 Tax_Id=243243 SubName: Full=NADH dehydrog...   365   4e-99
tr|Q7TX56|Q7TX56_MYCBO Tax_Id=1765 (nuoJ)SubName: Full=PROBABLE ...   364   6e-99
tr|P95172|P95172_MYCTU Tax_Id=1773 (nuoJ)SubName: Full=NADH dehy...   364   6e-99
tr|C6DX92|C6DX92_MYCTK Tax_Id=478434 SubName: Full=NADH dehydrog...   364   6e-99
tr|C1AGS1|C1AGS1_MYCBT Tax_Id=561275 (nuoJ)SubName: Full=NADH de...   364   6e-99
tr|A5U7H0|A5U7H0_MYCTA Tax_Id=419947 (nuoJ)SubName: Full=NADH de...   364   6e-99
tr|A1KNF0|A1KNF0_MYCBP Tax_Id=410289 (nuoJ)SubName: Full=Probabl...   364   6e-99
tr|A5WS61|A5WS61_MYCTF Tax_Id=336982 SubName: Full=NADH dehydrog...   364   6e-99
tr|A4KL52|A4KL52_MYCTU Tax_Id=395095 SubName: Full=NADH dehydrog...   364   6e-99
tr|Q73V06|Q73V06_MYCPA Tax_Id=1770 (nuoJ)SubName: Full=NuoJ;[Myc...   363   8e-99
tr|A1T697|A1T697_MYCVP Tax_Id=350058 SubName: Full=NADH-ubiquino...   281   4e-74
tr|Q1BBQ2|Q1BBQ2_MYCSS Tax_Id=164756 SubName: Full=NADH-ubiquino...   278   6e-73
tr|A3PWR2|A3PWR2_MYCSJ Tax_Id=164757 SubName: Full=NADH-ubiquino...   278   6e-73
tr|A1UD95|A1UD95_MYCSK Tax_Id=189918 SubName: Full=NADH-ubiquino...   278   6e-73
tr|A0QU27|A0QU27_MYCS2 Tax_Id=246196 SubName: Full=NADH dehydrog...   276   1e-72
tr|Q0S441|Q0S441_RHOSR Tax_Id=101510 SubName: Full=Probable NADH...   273   1e-71
tr|A4TDB4|A4TDB4_MYCGI Tax_Id=350054 SubName: Full=NADH-ubiquino...   269   3e-70
tr|C1AZF6|C1AZF6_RHOOB Tax_Id=632772 (nuoJ)SubName: Full=NADH-qu...   263   1e-68
tr|D0LDA7|D0LDA7_GORB4 Tax_Id=526226 SubName: Full=NADH-ubiquino...   250   1e-64
tr|C0ZYJ1|C0ZYJ1_RHOE4 Tax_Id=234621 (nuoJ)SubName: Full=NADH-qu...   250   1e-64
tr|C3JKF8|C3JKF8_RHOER Tax_Id=596309 SubName: Full=NADH-quinone ...   250   1e-64
tr|B1MPH3|B1MPH3_MYCA9 Tax_Id=561007 SubName: Full=NADH-quinone ...   249   3e-64
tr|Q9XAR3|Q9XAR3_STRCO Tax_Id=1902 SubName: Full=NuoJ, NADH dehy...   246   1e-63
tr|Q82DX2|Q82DX2_STRAW Tax_Id=33903 (nuoJ1)SubName: Full=Putativ...   243   2e-62
tr|C9YXV3|C9YXV3_STRSW Tax_Id=680198 (nuoJ)SubName: Full=NuoJ, N...   239   3e-61
tr|B5HDN0|B5HDN0_STRPR Tax_Id=457429 SubName: Full=NADH dehydrog...   238   4e-61
tr|B5HQC6|B5HQC6_9ACTO Tax_Id=463191 SubName: Full=NADH dehydrog...   237   8e-61
tr|C9N6B9|C9N6B9_9ACTO Tax_Id=591167 SubName: Full=NADH-ubiquino...   231   5e-59
tr|B1W510|B1W510_STRGG Tax_Id=455632 (nuoJ1)SubName: Full=Putati...   231   6e-59
tr|Q5YWD5|Q5YWD5_NOCFA Tax_Id=37329 (nuoJ)SubName: Full=Putative...   228   4e-58
tr|D1A462|D1A462_THECU Tax_Id=471852 SubName: Full=NADH-ubiquino...   228   4e-58
tr|B5GWF6|B5GWF6_STRCL Tax_Id=443255 SubName: Full=NADH dehydrog...   228   7e-58
tr|B4V2W6|B4V2W6_9ACTO Tax_Id=465541 SubName: Full=NADH dehydrog...   226   1e-57
tr|B5GCW4|B5GCW4_9ACTO Tax_Id=465543 SubName: Full=NADH dehydrog...   221   8e-56
tr|C7QCP3|C7QCP3_CATAD Tax_Id=479433 SubName: Full=NADH-ubiquino...   218   5e-55
tr|A0LRJ0|A0LRJ0_ACIC1 Tax_Id=351607 SubName: Full=NADH-ubiquino...   214   6e-54
tr|A3THI4|A3THI4_9MICO Tax_Id=313589 SubName: Full=NADH dehydrog...   208   6e-52
tr|C1WGN6|C1WGN6_9ACTO Tax_Id=479435 SubName: Full=NADH dehydrog...   199   3e-49
tr|A8M613|A8M613_SALAI Tax_Id=391037 SubName: Full=NADH-ubiquino...   196   2e-48
tr|C2AVH8|C2AVH8_TSUPA Tax_Id=521096 SubName: Full=NADH dehydrog...   191   5e-47
tr|C4E4P8|C4E4P8_STRRS Tax_Id=479432 SubName: Full=NADH dehydrog...   191   9e-47
tr|A1SE36|A1SE36_NOCSJ Tax_Id=196162 SubName: Full=NADH-ubiquino...   189   2e-46
tr|A4XC29|A4XC29_SALTO Tax_Id=369723 SubName: Full=NADH-ubiquino...   189   3e-46
tr|Q2JFL1|Q2JFL1_FRASC Tax_Id=106370 SubName: Full=NADH-ubiquino...   187   1e-45
tr|C1RIQ3|C1RIQ3_9CELL Tax_Id=446466 SubName: Full=NADH dehydrog...   184   1e-44
tr|C1YIA3|C1YIA3_NOCDA Tax_Id=446468 SubName: Full=NADH dehydrog...   183   2e-44
tr|C4RKR7|C4RKR7_9ACTO Tax_Id=219305 SubName: Full=NADH dehydrog...   182   2e-44
tr|C4DMS3|C4DMS3_9ACTO Tax_Id=446470 SubName: Full=NADH dehydrog...   181   9e-44

>tr|B2HGD9|B2HGD9_MYCMM Tax_Id=216594 (nuoJ)SubName: Full=NADH
           dehydrogenase I (Chain J) NuoJ (NADH-ubiquinone
           oxidoreductase chain J);[Mycobacterium marinum]
          Length = 262

 Score =  421 bits (1081), Expect = e-116
 Identities = 225/262 (85%), Positives = 226/262 (86%)

Query: 1   VTSTLASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILA 60
           +TSTLASSLAADTITVTSTGEAVTFWI                   YSAMFLAMTMIILA
Sbjct: 1   MTSTLASSLAADTITVTSTGEAVTFWILGALALVGALGVVMAVNAVYSAMFLAMTMIILA 60

Query: 61  VFYMIQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGF 120
           VFYMIQDALFLG      YTGA           IGVDSAESLKETLRGQRVAALVIGVGF
Sbjct: 61  VFYMIQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAALVIGVGF 120

Query: 121 GVLLIAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVL 180
           GVLLIAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVL
Sbjct: 121 GVLLIAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVL 180

Query: 181 AHRERFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGI 240
           AHRERFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGI
Sbjct: 181 AHRERFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGI 240

Query: 241 LQTRGADGLQTPSPEAITGGAS 262
           LQTRGADGLQTPSPEAITGGAS
Sbjct: 241 LQTRGADGLQTPSPEAITGGAS 262


>tr|A0PR47|A0PR47_MYCUA Tax_Id=362242 (nuoJ)SubName: Full=NADH
           dehydrogenase I (Chain J) NuoJ (NADH-ubiquinone
           oxidoreductase chain J);[Mycobacterium ulcerans]
          Length = 262

 Score =  421 bits (1081), Expect = e-116
 Identities = 225/262 (85%), Positives = 226/262 (86%)

Query: 1   VTSTLASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILA 60
           +TSTLASSLAADTITVTSTGEAVTFWI                   YSAMFLAMTMIILA
Sbjct: 1   MTSTLASSLAADTITVTSTGEAVTFWILGALALVGALGVVMAVNAVYSAMFLAMTMIILA 60

Query: 61  VFYMIQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGF 120
           VFYMIQDALFLG      YTGA           IGVDSAESLKETLRGQRVAALVIGVGF
Sbjct: 61  VFYMIQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAALVIGVGF 120

Query: 121 GVLLIAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVL 180
           GVLLIAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVL
Sbjct: 121 GVLLIAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVL 180

Query: 181 AHRERFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGI 240
           AHRERFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGI
Sbjct: 181 AHRERFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGI 240

Query: 241 LQTRGADGLQTPSPEAITGGAS 262
           LQTRGADGLQTPSPEAITGGAS
Sbjct: 241 LQTRGADGLQTPSPEAITGGAS 262


>tr|A0QJV6|A0QJV6_MYCA1 Tax_Id=243243 SubName: Full=NADH
           dehydrogenase subunit j;[Mycobacterium avium]
          Length = 274

 Score =  365 bits (936), Expect = 4e-99
 Identities = 196/266 (73%), Positives = 207/266 (77%), Gaps = 4/266 (1%)

Query: 1   VTSTLASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILA 60
           V +TLASS + DTI  TSTGEAVTFW+                   YSAMFLAMTMIILA
Sbjct: 9   VAATLASSYSQDTIVRTSTGEAVTFWVLGALAVIGALGVVLAVNAVYSAMFLAMTMIILA 68

Query: 61  VFYMIQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGF 120
           VFYMIQDALFLG      YTGA           IGVDSAESLKETLRGQRVAA+  GVGF
Sbjct: 69  VFYMIQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVAAGVGF 128

Query: 121 GVLLIAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVL 180
           G+LLIAA+GNVA+GGFAGLT ANANGNVEGLAALIFSRYLWAFELTSALLITAA+GAMVL
Sbjct: 129 GILLIAAVGNVASGGFAGLTTANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVL 188

Query: 181 AHRERFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGI 240
           AHRERFERRK+QRELSQERFR GGHPTPLPNPGVYARHNAVDVAALLPDGSYS+LSV  I
Sbjct: 189 AHRERFERRKTQRELSQERFRAGGHPTPLPNPGVYARHNAVDVAALLPDGSYSKLSVSPI 248

Query: 241 LQTRGADGLQT----PSPEAITGGAS 262
           LQ+RG DG       PSP    GGAS
Sbjct: 249 LQSRGGDGKDVAAPEPSPSLSQGGAS 274


>tr|Q7TX56|Q7TX56_MYCBO Tax_Id=1765 (nuoJ)SubName: Full=PROBABLE
           NADH DEHYDROGENASE I (CHAIN J) NUOJ (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN J); EC=1.6.5.3;[Mycobacterium
           bovis]
          Length = 262

 Score =  364 bits (934), Expect = 6e-99
 Identities = 191/255 (74%), Positives = 204/255 (80%)

Query: 5   LASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYM 64
           + + LA+D I  TSTGEAV FW+                   YSAMFLAMTMIILAVFYM
Sbjct: 1   MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60

Query: 65  IQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLL 124
            QDALFLG      YTGA           IGVDSAESLKETLRGQRVAA++ GVGFGVLL
Sbjct: 61  AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120

Query: 125 IAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRE 184
           I+ IG VA  GFAGLT ANANGNVEGLAALIFSRYLWAFELTSALLITAA+GAMVLAHRE
Sbjct: 121 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 180

Query: 185 RFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
           RFERRK+QRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVP +L+TR
Sbjct: 181 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240

Query: 245 GADGLQTPSPEAITG 259
           GADGLQTPSP A++G
Sbjct: 241 GADGLQTPSPGAVSG 255


>tr|P95172|P95172_MYCTU Tax_Id=1773 (nuoJ)SubName: Full=NADH
           dehydrogenase I, J subunit; EC=1.6.5.3; SubName:
           Full=PROBABLE NADH DEHYDROGENASE I (CHAIN J) NUOJ
           (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN J);
           EC=1.6.5.3;[Mycobacterium tuberculosis]
          Length = 262

 Score =  364 bits (934), Expect = 6e-99
 Identities = 191/255 (74%), Positives = 204/255 (80%)

Query: 5   LASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYM 64
           + + LA+D I  TSTGEAV FW+                   YSAMFLAMTMIILAVFYM
Sbjct: 1   MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60

Query: 65  IQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLL 124
            QDALFLG      YTGA           IGVDSAESLKETLRGQRVAA++ GVGFGVLL
Sbjct: 61  AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120

Query: 125 IAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRE 184
           I+ IG VA  GFAGLT ANANGNVEGLAALIFSRYLWAFELTSALLITAA+GAMVLAHRE
Sbjct: 121 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 180

Query: 185 RFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
           RFERRK+QRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVP +L+TR
Sbjct: 181 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240

Query: 245 GADGLQTPSPEAITG 259
           GADGLQTPSP A++G
Sbjct: 241 GADGLQTPSPGAVSG 255


>tr|C6DX92|C6DX92_MYCTK Tax_Id=478434 SubName: Full=NADH
           dehydrogenase subunit I J nuoJ;[Mycobacterium
           tuberculosis]
          Length = 262

 Score =  364 bits (934), Expect = 6e-99
 Identities = 191/255 (74%), Positives = 204/255 (80%)

Query: 5   LASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYM 64
           + + LA+D I  TSTGEAV FW+                   YSAMFLAMTMIILAVFYM
Sbjct: 1   MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60

Query: 65  IQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLL 124
            QDALFLG      YTGA           IGVDSAESLKETLRGQRVAA++ GVGFGVLL
Sbjct: 61  AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120

Query: 125 IAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRE 184
           I+ IG VA  GFAGLT ANANGNVEGLAALIFSRYLWAFELTSALLITAA+GAMVLAHRE
Sbjct: 121 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 180

Query: 185 RFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
           RFERRK+QRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVP +L+TR
Sbjct: 181 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240

Query: 245 GADGLQTPSPEAITG 259
           GADGLQTPSP A++G
Sbjct: 241 GADGLQTPSPGAVSG 255


>tr|C1AGS1|C1AGS1_MYCBT Tax_Id=561275 (nuoJ)SubName: Full=NADH
           dehydrogenase subunit J; EC=1.6.5.3;[Mycobacterium
           bovis]
          Length = 262

 Score =  364 bits (934), Expect = 6e-99
 Identities = 191/255 (74%), Positives = 204/255 (80%)

Query: 5   LASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYM 64
           + + LA+D I  TSTGEAV FW+                   YSAMFLAMTMIILAVFYM
Sbjct: 1   MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60

Query: 65  IQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLL 124
            QDALFLG      YTGA           IGVDSAESLKETLRGQRVAA++ GVGFGVLL
Sbjct: 61  AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120

Query: 125 IAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRE 184
           I+ IG VA  GFAGLT ANANGNVEGLAALIFSRYLWAFELTSALLITAA+GAMVLAHRE
Sbjct: 121 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 180

Query: 185 RFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
           RFERRK+QRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVP +L+TR
Sbjct: 181 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240

Query: 245 GADGLQTPSPEAITG 259
           GADGLQTPSP A++G
Sbjct: 241 GADGLQTPSPGAVSG 255


>tr|A5U7H0|A5U7H0_MYCTA Tax_Id=419947 (nuoJ)SubName: Full=NADH
           dehydrogenase subunit J;[Mycobacterium tuberculosis]
          Length = 262

 Score =  364 bits (934), Expect = 6e-99
 Identities = 191/255 (74%), Positives = 204/255 (80%)

Query: 5   LASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYM 64
           + + LA+D I  TSTGEAV FW+                   YSAMFLAMTMIILAVFYM
Sbjct: 1   MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60

Query: 65  IQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLL 124
            QDALFLG      YTGA           IGVDSAESLKETLRGQRVAA++ GVGFGVLL
Sbjct: 61  AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120

Query: 125 IAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRE 184
           I+ IG VA  GFAGLT ANANGNVEGLAALIFSRYLWAFELTSALLITAA+GAMVLAHRE
Sbjct: 121 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 180

Query: 185 RFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
           RFERRK+QRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVP +L+TR
Sbjct: 181 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240

Query: 245 GADGLQTPSPEAITG 259
           GADGLQTPSP A++G
Sbjct: 241 GADGLQTPSPGAVSG 255


>tr|A1KNF0|A1KNF0_MYCBP Tax_Id=410289 (nuoJ)SubName: Full=Probable
           NADH dehydrogenase I (Chain J) nuoJ;
           EC=1.6.5.3;[Mycobacterium bovis]
          Length = 262

 Score =  364 bits (934), Expect = 6e-99
 Identities = 191/255 (74%), Positives = 204/255 (80%)

Query: 5   LASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYM 64
           + + LA+D I  TSTGEAV FW+                   YSAMFLAMTMIILAVFYM
Sbjct: 1   MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60

Query: 65  IQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLL 124
            QDALFLG      YTGA           IGVDSAESLKETLRGQRVAA++ GVGFGVLL
Sbjct: 61  AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120

Query: 125 IAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRE 184
           I+ IG VA  GFAGLT ANANGNVEGLAALIFSRYLWAFELTSALLITAA+GAMVLAHRE
Sbjct: 121 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 180

Query: 185 RFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
           RFERRK+QRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVP +L+TR
Sbjct: 181 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240

Query: 245 GADGLQTPSPEAITG 259
           GADGLQTPSP A++G
Sbjct: 241 GADGLQTPSPGAVSG 255


>tr|A5WS61|A5WS61_MYCTF Tax_Id=336982 SubName: Full=NADH
           dehydrogenase I chain J nuoJ (NADH-ubiquinone
           oxidoreductase chain J);[Mycobacterium tuberculosis]
          Length = 262

 Score =  364 bits (934), Expect = 6e-99
 Identities = 191/255 (74%), Positives = 204/255 (80%)

Query: 5   LASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYM 64
           + + LA+D I  TSTGEAV FW+                   YSAMFLAMTMIILAVFYM
Sbjct: 1   MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60

Query: 65  IQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLL 124
            QDALFLG      YTGA           IGVDSAESLKETLRGQRVAA++ GVGFGVLL
Sbjct: 61  AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120

Query: 125 IAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRE 184
           I+ IG VA  GFAGLT ANANGNVEGLAALIFSRYLWAFELTSALLITAA+GAMVLAHRE
Sbjct: 121 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 180

Query: 185 RFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
           RFERRK+QRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVP +L+TR
Sbjct: 181 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240

Query: 245 GADGLQTPSPEAITG 259
           GADGLQTPSP A++G
Sbjct: 241 GADGLQTPSPGAVSG 255


>tr|A4KL52|A4KL52_MYCTU Tax_Id=395095 SubName: Full=NADH
           dehydrogenase I (Chain J) nuoJ (NADH-ubiquinone
           oxidoreductase chain J);[Mycobacterium tuberculosis str.
           Haarlem]
          Length = 262

 Score =  364 bits (934), Expect = 6e-99
 Identities = 191/255 (74%), Positives = 204/255 (80%)

Query: 5   LASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYM 64
           + + LA+D I  TSTGEAV FW+                   YSAMFLAMTMIILAVFYM
Sbjct: 1   MTAVLASDVIVRTSTGEAVMFWVLSALALLGAVGVVLAVNAVYSAMFLAMTMIILAVFYM 60

Query: 65  IQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLL 124
            QDALFLG      YTGA           IGVDSAESLKETLRGQRVAA++ GVGFGVLL
Sbjct: 61  AQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLKETLRGQRVAAVLTGVGFGVLL 120

Query: 125 IAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRE 184
           I+ IG VA  GFAGLT ANANGNVEGLAALIFSRYLWAFELTSALLITAA+GAMVLAHRE
Sbjct: 121 ISTIGQVATRGFAGLTVANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVLAHRE 180

Query: 185 RFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
           RFERRK+QRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVP +L+TR
Sbjct: 181 RFERRKTQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPRMLRTR 240

Query: 245 GADGLQTPSPEAITG 259
           GADGLQTPSP A++G
Sbjct: 241 GADGLQTPSPGAVSG 255


>tr|Q73V06|Q73V06_MYCPA Tax_Id=1770 (nuoJ)SubName:
           Full=NuoJ;[Mycobacterium paratuberculosis]
          Length = 274

 Score =  363 bits (933), Expect = 8e-99
 Identities = 195/266 (73%), Positives = 207/266 (77%), Gaps = 4/266 (1%)

Query: 1   VTSTLASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILA 60
           V +TLASS + DTI  TSTGEAVTFW+                   YSAMFLAMTMIILA
Sbjct: 9   VAATLASSYSQDTIVRTSTGEAVTFWVLGALAVIGALGVVLAVNAVYSAMFLAMTMIILA 68

Query: 61  VFYMIQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGF 120
           VFYMIQDALFLG      YTGA           IGVDSAESL+ETLRGQRVAA+  GVGF
Sbjct: 69  VFYMIQDALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSAESLRETLRGQRVAAVAAGVGF 128

Query: 121 GVLLIAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVL 180
           G+LLIAA+GNVA+GGFAGLT ANANGNVEGLAALIFSRYLWAFELTSALLITAA+GAMVL
Sbjct: 129 GILLIAAVGNVASGGFAGLTTANANGNVEGLAALIFSRYLWAFELTSALLITAAVGAMVL 188

Query: 181 AHRERFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGI 240
           AHRERFERRK+QRELSQERFR GGHPTPLPNPGVYARHNAVDVAALLPDGSYS+LSV  I
Sbjct: 189 AHRERFERRKTQRELSQERFRAGGHPTPLPNPGVYARHNAVDVAALLPDGSYSKLSVSPI 248

Query: 241 LQTRGADGLQT----PSPEAITGGAS 262
           LQ+RG DG       PSP    GGAS
Sbjct: 249 LQSRGGDGKDVAAPEPSPSLSQGGAS 274


>tr|A1T697|A1T697_MYCVP Tax_Id=350058 SubName:
           Full=NADH-ubiquinone/plastoquinone oxidoreductase, chain
           6; Flags: Precursor;[Mycobacterium vanbaalenii]
          Length = 241

 Score =  281 bits (720), Expect = 4e-74
 Identities = 149/225 (66%), Positives = 165/225 (73%)

Query: 20  GEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXXXXXXY 79
           GEAV FW+                   YSA+ LA TMI LAV Y+ QDA FLG      Y
Sbjct: 2   GEAVLFWVFAVVSVTGALGVVAAPKAVYSAISLATTMIALAVLYIAQDAPFLGVVQIVVY 61

Query: 80  TGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAGGFAGL 139
           TGA           IGVDS+ESL ETLRGQRVAA+V+G+GFGVLL+A +GNV+A GF GL
Sbjct: 62  TGAVMMLFLFVLMLIGVDSSESLVETLRGQRVAAIVVGLGFGVLLVAGVGNVSATGFVGL 121

Query: 140 TAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFERRKSQRELSQER 199
             AN +GNVEGLAALIF++YLWAFELT ALLITAA+GAMVLAHRERFERRK+QREL+ ER
Sbjct: 122 DQANEDGNVEGLAALIFTKYLWAFELTGALLITAALGAMVLAHRERFERRKTQRELAAER 181

Query: 200 FRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
           F PGGHPT LPNPGVYARHNAVDV A LPDGS SELSV  ILQ R
Sbjct: 182 FAPGGHPTTLPNPGVYARHNAVDVPARLPDGSGSELSVSAILQVR 226


>tr|Q1BBQ2|Q1BBQ2_MYCSS Tax_Id=164756 SubName:
           Full=NADH-ubiquinone/plastoquinone oxidoreductase, chain
           6;[Mycobacterium sp.]
          Length = 249

 Score =  278 bits (710), Expect = 6e-73
 Identities = 148/236 (62%), Positives = 168/236 (71%)

Query: 9   LAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDA 68
           LAAD    TST EAV FWI                   YSA+FLA TMI LAV Y+ Q+A
Sbjct: 3   LAADGAARTSTSEAVVFWILGGIALIGALGVVSAPKAVYSAIFLATTMIALAVLYIAQEA 62

Query: 69  LFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAI 128
           LFLG      YTGA           +GVD++ESL ET+RGQRVAA+ +GVGFGVLLIA I
Sbjct: 63  LFLGVVQIVVYTGAVMMLFLFVLMLVGVDNSESLVETIRGQRVAAIAVGVGFGVLLIAGI 122

Query: 129 GNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFER 188
           G V+  GF GL  AN++GNVEGLAALIF+RYLWAFELT ALLITAA+GAMVLAHRERFE 
Sbjct: 123 GTVSTSGFTGLPDANSSGNVEGLAALIFTRYLWAFELTGALLITAALGAMVLAHRERFEH 182

Query: 189 RKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
           RK+QRELS ERF+ GGH TP+PNPGVYARHNAVD+   LPDGS ++ SV  ILQ R
Sbjct: 183 RKTQRELSIERFQDGGHATPMPNPGVYARHNAVDMPGRLPDGSGAKTSVSTILQPR 238


>tr|A3PWR2|A3PWR2_MYCSJ Tax_Id=164757 SubName:
           Full=NADH-ubiquinone/plastoquinone oxidoreductase, chain
           6;[Mycobacterium sp.]
          Length = 249

 Score =  278 bits (710), Expect = 6e-73
 Identities = 148/236 (62%), Positives = 168/236 (71%)

Query: 9   LAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDA 68
           LAAD    TST EAV FWI                   YSA+FLA TMI LAV Y+ Q+A
Sbjct: 3   LAADGAARTSTSEAVVFWILGGIALIGALGVVSAPKAVYSAIFLATTMIALAVLYIAQEA 62

Query: 69  LFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAI 128
           LFLG      YTGA           +GVD++ESL ET+RGQRVAA+ +GVGFGVLLIA I
Sbjct: 63  LFLGVVQIVVYTGAVMMLFLFVLMLVGVDNSESLVETIRGQRVAAIAVGVGFGVLLIAGI 122

Query: 129 GNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFER 188
           G V+  GF GL  AN++GNVEGLAALIF+RYLWAFELT ALLITAA+GAMVLAHRERFE 
Sbjct: 123 GTVSTSGFTGLPDANSSGNVEGLAALIFTRYLWAFELTGALLITAALGAMVLAHRERFEH 182

Query: 189 RKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
           RK+QRELS ERF+ GGH TP+PNPGVYARHNAVD+   LPDGS ++ SV  ILQ R
Sbjct: 183 RKTQRELSIERFQDGGHATPMPNPGVYARHNAVDMPGRLPDGSGAKTSVSTILQPR 238


>tr|A1UD95|A1UD95_MYCSK Tax_Id=189918 SubName:
           Full=NADH-ubiquinone/plastoquinone oxidoreductase, chain
           6;[Mycobacterium sp.]
          Length = 249

 Score =  278 bits (710), Expect = 6e-73
 Identities = 148/236 (62%), Positives = 168/236 (71%)

Query: 9   LAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDA 68
           LAAD    TST EAV FWI                   YSA+FLA TMI LAV Y+ Q+A
Sbjct: 3   LAADGAARTSTSEAVVFWILGGIALIGALGVVSAPKAVYSAIFLATTMIALAVLYIAQEA 62

Query: 69  LFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAI 128
           LFLG      YTGA           +GVD++ESL ET+RGQRVAA+ +GVGFGVLLIA I
Sbjct: 63  LFLGVVQIVVYTGAVMMLFLFVLMLVGVDNSESLVETIRGQRVAAIAVGVGFGVLLIAGI 122

Query: 129 GNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFER 188
           G V+  GF GL  AN++GNVEGLAALIF+RYLWAFELT ALLITAA+GAMVLAHRERFE 
Sbjct: 123 GTVSTSGFTGLPDANSSGNVEGLAALIFTRYLWAFELTGALLITAALGAMVLAHRERFEH 182

Query: 189 RKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
           RK+QRELS ERF+ GGH TP+PNPGVYARHNAVD+   LPDGS ++ SV  ILQ R
Sbjct: 183 RKTQRELSIERFQDGGHATPMPNPGVYARHNAVDMPGRLPDGSGAKTSVSTILQPR 238


>tr|A0QU27|A0QU27_MYCS2 Tax_Id=246196 SubName: Full=NADH
           dehydrogenase subunit j;[Mycobacterium smegmatis]
          Length = 252

 Score =  276 bits (707), Expect = 1e-72
 Identities = 146/228 (64%), Positives = 164/228 (71%)

Query: 17  TSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXXXX 76
           TST EAV FW+                   YSA+FLA TMI LAV Y+ QDA FLG    
Sbjct: 15  TSTSEAVVFWVVGTVALVGAIGVVAARKAVYSAVFLACTMISLAVLYIAQDAPFLGVVQI 74

Query: 77  XXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAGGF 136
             YTGA           IGVD  ESL ET++G R+AAL+ G GFG+L+IA IGNV+  GF
Sbjct: 75  VVYTGAVMMLFLFVLMLIGVDLTESLVETIKGHRIAALIAGAGFGILVIAGIGNVSVAGF 134

Query: 137 AGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFERRKSQRELS 196
           +GL AAN+ GNVEGLAALIF+RYLWAFELTSALLITAA+GAMVLAHRERFERRK+QREL+
Sbjct: 135 SGLAAANSGGNVEGLAALIFTRYLWAFELTSALLITAALGAMVLAHRERFERRKTQRELA 194

Query: 197 QERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
            ERF+ GGHPTPLPNPGVYARHN+VDV A LPDGS S LSV  IL  R
Sbjct: 195 IERFQTGGHPTPLPNPGVYARHNSVDVPARLPDGSESPLSVSTILPHR 242


>tr|Q0S441|Q0S441_RHOSR Tax_Id=101510 SubName: Full=Probable NADH
           dehydrogenase subunit J;[Rhodococcus sp.]
          Length = 269

 Score =  273 bits (698), Expect = 1e-71
 Identities = 151/263 (57%), Positives = 170/263 (64%), Gaps = 8/263 (3%)

Query: 6   ASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMI 65
           A  L A+  T TSTGE V FW+                   YSA+FLA TMIILAVFY+ 
Sbjct: 4   AVQLVAEPFTQTSTGEGVQFWVLATVAVIGALGVVSATKAVYSAIFLATTMIILAVFYIA 63

Query: 66  QDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLI 125
           Q ALFLG      YTGA           IGVDS+ESL E LRGQRVAA+  G+GFG+LLI
Sbjct: 64  QGALFLGVVQIVVYTGAVMMLFLFVLMLIGVDSSESLVENLRGQRVAAIAAGLGFGLLLI 123

Query: 126 AAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRER 185
             IG+ +   F GL  ANA GNVEGLA L+F RY+WAFELT ALLITA IGAMVLAHRER
Sbjct: 124 GGIGSASVSAFTGLDQANAAGNVEGLAELVFVRYVWAFELTGALLITATIGAMVLAHRER 183

Query: 186 FERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR- 244
           FERRK QRELSQ+R R G   TPLP+PGVYARHNAVD+ ALLPDG++SELSV   L+ R 
Sbjct: 184 FERRKDQRELSQDRVREGARVTPLPSPGVYARHNAVDIPALLPDGTFSELSVSRSLERRP 243

Query: 245 -------GADGLQTPSPEAITGG 260
                  G   + TP P A   G
Sbjct: 244 SLPARALGTADVATPDPGATDEG 266


>tr|A4TDB4|A4TDB4_MYCGI Tax_Id=350054 SubName:
           Full=NADH-ubiquinone/plastoquinone oxidoreductase, chain
           6; Flags: Precursor;[Mycobacterium gilvum]
          Length = 236

 Score =  269 bits (687), Expect = 3e-70
 Identities = 146/238 (61%), Positives = 163/238 (68%), Gaps = 5/238 (2%)

Query: 23  VTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXXXXXXYTGA 82
           + FW+                   YSAM LA TMI LAV Y+ Q A FLG      YTGA
Sbjct: 2   ILFWVMAVVSVGGALGVIAAPKAVYSAMSLAATMIALAVLYIAQGAPFLGVVQIVVYTGA 61

Query: 83  XXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAGGFAGLTAA 142
                      IGVDS+ESL ETLRGQR+AAL +G+GFG+LLIA IG+V+A G  GL  A
Sbjct: 62  VMMLFLFVLMMIGVDSSESLVETLRGQRIAALAVGLGFGILLIAGIGSVSATGIVGLDQA 121

Query: 143 NANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFERRKSQRELSQERFRP 202
           N  GNVEGLAALIF++YLWAFELT ALLITAA+GAMVLAHRERF+RRK+QREL+ ERF P
Sbjct: 122 NGGGNVEGLAALIFTKYLWAFELTGALLITAALGAMVLAHRERFQRRKTQRELAVERFAP 181

Query: 203 GGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTRGADGLQTPSPEAITGG 260
           GGHPT LPNPGVYARHNAVDV A LPDGS SELSV  ILQ R       P+ E   GG
Sbjct: 182 GGHPTTLPNPGVYARHNAVDVPARLPDGSGSELSVSAILQVR-----PVPTDERSPGG 234


>tr|C1AZF6|C1AZF6_RHOOB Tax_Id=632772 (nuoJ)SubName:
           Full=NADH-quinone oxidoreductase chain J;
           EC=1.6.99.5;[Rhodococcus opacus]
          Length = 272

 Score =  263 bits (673), Expect = 1e-68
 Identities = 145/260 (55%), Positives = 164/260 (63%), Gaps = 8/260 (3%)

Query: 9   LAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDA 68
           L A+  T TSTGE V FW+                   YSA+FLA TMIILAVFY+ Q A
Sbjct: 10  LVAEPFTQTSTGEGVQFWVLATVAVIGALGVVSATKAVYSAIFLATTMIILAVFYIAQGA 69

Query: 69  LFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAI 128
            FLG      YTGA           IGVDS+ESL E LRGQRVAA+  G+GFG+LLI   
Sbjct: 70  PFLGVVQIVVYTGAVMMLFLFVLMLIGVDSSESLVENLRGQRVAAIAAGLGFGLLLIGGF 129

Query: 129 GNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFER 188
           G  +   F GL  ANA GNV+GLA L+F RY+WAFELT ALLITA IGAMVLAHRERFER
Sbjct: 130 GRASVSAFTGLDQANAGGNVQGLAELVFVRYVWAFELTGALLITATIGAMVLAHRERFER 189

Query: 189 RKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR---- 244
           RK QRELSQ+R R G   TPLP+PGVYARHNAVD+ ALLPDG++S+LSV   L  R    
Sbjct: 190 RKDQRELSQDRVREGARVTPLPSPGVYARHNAVDIPALLPDGTFSDLSVSRSLDRRPSMP 249

Query: 245 ----GADGLQTPSPEAITGG 260
               G   +  P P A   G
Sbjct: 250 ARALGNADVAAPEPAATEDG 269


>tr|D0LDA7|D0LDA7_GORB4 Tax_Id=526226 SubName:
           Full=NADH-ubiquinone/plastoquinone oxidoreductase chain
           6;[Gordonia bronchialis]
          Length = 269

 Score =  250 bits (639), Expect = 1e-64
 Identities = 149/263 (56%), Positives = 169/263 (64%), Gaps = 7/263 (2%)

Query: 7   SSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQ 66
           ++L A  +T TSTGEAV FW+                   YSA+FLA TMIILA+FY+ Q
Sbjct: 2   TALLAAELTRTSTGEAVQFWVLGGVAVLGALGVVFATKAVYSAIFLATTMIILAIFYVAQ 61

Query: 67  DALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIA 126
            ALFLG      YTGA           IGVDS++SL ETLRGQR+AA VIG+GFG+LLIA
Sbjct: 62  GALFLGVVQVVVYTGAVMMLFLFVLMLIGVDSSDSLVETLRGQRLAAAVIGLGFGILLIA 121

Query: 127 AIGNVAAGGFAGLTAANAN-----GNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLA 181
            IG  +   FAG  AA  +     GNVE +A LIF +YLWAFELT ALLITA +GAMVLA
Sbjct: 122 GIGTASVATFAGAPAAGGSSTAGDGNVEAIAELIFVQYLWAFELTGALLITATLGAMVLA 181

Query: 182 HRERFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGIL 241
           HRERF  R SQRELS  RFR G   TPLP+PGVYARHNAVDV A LPDGS + LSV   L
Sbjct: 182 HRERFGPRMSQRELSVARFRQGIDMTPLPSPGVYARHNAVDVPARLPDGSPARLSVNATL 241

Query: 242 QTRGAD-GLQ-TPSPEAITGGAS 262
            TR  D GL+  PS    T  AS
Sbjct: 242 VTRDHDLGLRIDPSSNPTTPPAS 264


>tr|C0ZYJ1|C0ZYJ1_RHOE4 Tax_Id=234621 (nuoJ)SubName:
           Full=NADH-quinone oxidoreductase chain J;
           EC=1.6.99.5;[Rhodococcus erythropolis]
          Length = 265

 Score =  250 bits (638), Expect = 1e-64
 Identities = 141/256 (55%), Positives = 167/256 (65%), Gaps = 13/256 (5%)

Query: 1   VTSTLASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILA 60
           VT+T+   LA  T+T TSTGEAV FWI                   YSA+FLAMTMIILA
Sbjct: 5   VTTTI---LAEGTMTSTSTGEAVQFWILGTLAVISALGVVAAPKAVYSALFLAMTMIILA 61

Query: 61  VFYMIQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGF 120
           VFY++Q ALFLG      YTGA           +GVDS++SL ETLRGQRV+A+VIGVGF
Sbjct: 62  VFYIVQGALFLGVVQIVVYTGAVMMLFLFVLMLVGVDSSDSLVETLRGQRVSAIVIGVGF 121

Query: 121 GVLLIAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVL 180
           G+LLI  +GN +  GF G T  +  GN++ LA LIF RY+WAFELT ALLITA +GAM+L
Sbjct: 122 GLLLIGGLGNASISGFTGFTGLD-QGNIDALADLIFIRYVWAFELTGALLITATLGAMML 180

Query: 181 AHRERFERRKSQRELSQERFR---------PGGHPTPLPNPGVYARHNAVDVAALLPDGS 231
           AHRE+     SQRELSQ+RF            G  TPLP+PGVYARHNAVD+ ALLPDG+
Sbjct: 181 AHREKIGATLSQRELSQQRFAYLGSDEDNPEKGSATPLPSPGVYARHNAVDMPALLPDGT 240

Query: 232 YSELSVPGILQTRGAD 247
           +S LSV   L  R  D
Sbjct: 241 FSTLSVSSALTPRSPD 256


>tr|C3JKF8|C3JKF8_RHOER Tax_Id=596309 SubName: Full=NADH-quinone
           oxidoreductase, j subunit nuoj;[Rhodococcus erythropolis
           SK121]
          Length = 265

 Score =  250 bits (638), Expect = 1e-64
 Identities = 141/256 (55%), Positives = 167/256 (65%), Gaps = 13/256 (5%)

Query: 1   VTSTLASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILA 60
           VT+T+   LA  T+T TSTGEAV FWI                   YSA+FLAMTMIILA
Sbjct: 5   VTTTI---LAEGTMTSTSTGEAVQFWILGTLAVISALGVVAAPKAVYSALFLAMTMIILA 61

Query: 61  VFYMIQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGF 120
           VFY++Q ALFLG      YTGA           +GVDS++SL ETLRGQRV+A+VIGVGF
Sbjct: 62  VFYIVQGALFLGVVQIVVYTGAVMMLFLFVLMLVGVDSSDSLVETLRGQRVSAIVIGVGF 121

Query: 121 GVLLIAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVL 180
           G+LLI  +GN +  GF G T  +  GN++ LA LIF RY+WAFELT ALLITA +GAM+L
Sbjct: 122 GLLLIGGLGNASISGFTGFTGLD-QGNIDALADLIFIRYVWAFELTGALLITATLGAMML 180

Query: 181 AHRERFERRKSQRELSQERFR---------PGGHPTPLPNPGVYARHNAVDVAALLPDGS 231
           AHRE+     SQRELSQ+RF            G  TPLP+PGVYARHNAVD+ ALLPDG+
Sbjct: 181 AHREKIGATLSQRELSQQRFAYLGSDESNPDKGSATPLPSPGVYARHNAVDMPALLPDGT 240

Query: 232 YSELSVPGILQTRGAD 247
           +S LSV   L  R  D
Sbjct: 241 FSTLSVSSALTPRSPD 256


>tr|B1MPH3|B1MPH3_MYCA9 Tax_Id=561007 SubName: Full=NADH-quinone
           oxidoreductase, J subunit NuoJ;[Mycobacterium abscessus]
          Length = 259

 Score =  249 bits (635), Expect = 3e-64
 Identities = 135/239 (56%), Positives = 159/239 (66%)

Query: 6   ASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMI 65
           A+ LAA+ ++ T T E VTFW+                   YSA+FLAMTM+ILAVF++ 
Sbjct: 10  ATVLAAEGLSRTPTWEGVTFWVLGAIAVLGALGVIAAPKAVYSAIFLAMTMVILAVFFVA 69

Query: 66  QDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLI 125
           Q ALFLG      YTGA           +GVDS++SL ETL GQRV A+  G+GFG+L I
Sbjct: 70  QGALFLGVAQVVVYTGAVMMLFLFVLMFVGVDSSDSLVETLPGQRVGAVAAGLGFGILAI 129

Query: 126 AAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRER 185
           A+IGN +   F GL  AN+ GNVEGLA  IF  YLWAFELT ALLITA IGAMVLAHRE+
Sbjct: 130 ASIGNASTTVFVGLGQANSRGNVEGLAERIFIDYLWAFELTGALLITATIGAMVLAHREK 189

Query: 186 FERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
             +   QREL+  RF+ G   TPLPNPGVYARHNAVDV ALLPDGS+SELSV  +L  R
Sbjct: 190 LGQTGGQRELAIRRFQHGDRATPLPNPGVYARHNAVDVPALLPDGSFSELSVSAVLTPR 248


>tr|Q9XAR3|Q9XAR3_STRCO Tax_Id=1902 SubName: Full=NuoJ, NADH
           dehydrogenase subunit;[Streptomyces coelicolor]
          Length = 285

 Score =  246 bits (629), Expect = 1e-63
 Identities = 133/241 (55%), Positives = 164/241 (68%), Gaps = 1/241 (0%)

Query: 6   ASSLAADTITV-TSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYM 64
           A   AA T++  TSTGEAV FWI                   +SA+ LA TMI+LAVFY+
Sbjct: 3   AQLAAAATLSAGTSTGEAVQFWILGTVAVIGALCTVFMKKAVHSALCLAGTMIVLAVFYL 62

Query: 65  IQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLL 124
              A FLG      YTGA           +GV +A+SLKET++GQR  AL+ G+GFG+LL
Sbjct: 63  ANGAYFLGIVQIVVYTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLSGLGFGILL 122

Query: 125 IAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRE 184
           IA IGN +   F GL  ANANGNVEG+A+LIF++Y++AFE+T ALLITAA+GAMVL HRE
Sbjct: 123 IAGIGNASVSEFTGLAQANANGNVEGIASLIFTKYVFAFEITGALLITAAVGAMVLTHRE 182

Query: 185 RFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
           R ER ++QRELS++R R G H  PLP PGVYARHNAVD+A LLPDG+ SEL+V   L+ R
Sbjct: 183 RTERARTQRELSEQRIRDGKHLPPLPAPGVYARHNAVDIAGLLPDGTPSELTVSKTLRER 242

Query: 245 G 245
           G
Sbjct: 243 G 243


>tr|Q82DX2|Q82DX2_STRAW Tax_Id=33903 (nuoJ1)SubName: Full=Putative
           NADH dehydrogenase I chain J (Complex I);[Streptomyces
           avermitilis]
          Length = 280

 Score =  243 bits (619), Expect = 2e-62
 Identities = 132/229 (57%), Positives = 155/229 (67%)

Query: 17  TSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXXXX 76
           TSTGEA  FWI                   +SA+ LA TMIILAVFY+   A FLG    
Sbjct: 10  TSTGEAFQFWILGTVAVIGALCTVLMKKAVHSALCLAGTMIILAVFYLANGAYFLGVVQI 69

Query: 77  XXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAGGF 136
             YTGA           +GV +A+SLKET++GQR  ALV G+GFG LL A IGN +   F
Sbjct: 70  VVYTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALVCGLGFGTLLFAGIGNASIKEF 129

Query: 137 AGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFERRKSQRELS 196
            GL  ANANGNVEGLAALIF++Y++AFE+T ALLITAA+GAMVL HRER ER K+QRELS
Sbjct: 130 DGLGTANANGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTERAKTQRELS 189

Query: 197 QERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTRG 245
           ++R R G H  PLP PGVYARHNAVD+A LLPDG+ SEL+V   L+ RG
Sbjct: 190 EQRVREGKHLPPLPAPGVYARHNAVDIAGLLPDGTPSELTVNKTLRERG 238


>tr|C9YXV3|C9YXV3_STRSW Tax_Id=680198 (nuoJ)SubName: Full=NuoJ, NADH
           dehydrogenase subunit;[Streptomyces scabies]
          Length = 283

 Score =  239 bits (609), Expect = 3e-61
 Identities = 131/237 (55%), Positives = 159/237 (67%), Gaps = 1/237 (0%)

Query: 10  AADTITV-TSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDA 68
           AA T++  TSTGEA  FW+                   +SA+ LA TM+ILAVFY+   A
Sbjct: 7   AAATLSAGTSTGEAFQFWVLGTVAVIGALCTVFMKRAVHSALCLAGTMVILAVFYLANGA 66

Query: 69  LFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAI 128
            FLG      YTGA           +GV +A+SLKET++GQR  AL+ G GFG+LLIA I
Sbjct: 67  YFLGIVQIVVYTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALLCGAGFGILLIAGI 126

Query: 129 GNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFER 188
           GN +   F+GL  ANA GNVEGLAALIF+ Y++AFELT ALLITAA+GAMVL HRER ER
Sbjct: 127 GNASLTEFSGLGTANAGGNVEGLAALIFTDYVFAFELTGALLITAAVGAMVLTHRERTER 186

Query: 189 RKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTRG 245
            K+QREL+++R R G H  PLP PGVYARHNAVD+  LLPDG+ SEL+V   L+ RG
Sbjct: 187 PKTQRELAEQRVREGKHLPPLPAPGVYARHNAVDIPGLLPDGTPSELTVSKTLRDRG 243


>tr|B5HDN0|B5HDN0_STRPR Tax_Id=457429 SubName: Full=NADH
           dehydrogenase subunit J;[Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 279

 Score =  238 bits (608), Expect = 4e-61
 Identities = 131/233 (56%), Positives = 157/233 (67%), Gaps = 2/233 (0%)

Query: 15  TVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXX 74
           + TSTGEAV FW+                   +SA+ LA TMIILAVFY+   A FLG  
Sbjct: 7   SATSTGEAVQFWVLGTIAVIGALCTILMKRAVHSALCLAGTMIILAVFYLANGAYFLGVV 66

Query: 75  XXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAG 134
               YTGA           +GV +A+SLKETL+GQR  A   G+GFG+LLIA IGN +  
Sbjct: 67  QIVVYTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAAACGLGFGILLIAGIGNASLK 126

Query: 135 GFAGLTAANA--NGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFERRKSQ 192
            F GL AAN+   GNVEGLAALIF++Y++AFE+T ALLITAA+GAMVL HRER ER K+Q
Sbjct: 127 NFNGLGAANSAHGGNVEGLAALIFTKYVFAFEITGALLITAAVGAMVLTHRERTERAKTQ 186

Query: 193 RELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTRG 245
           RELS++R R G H  PLP PGVYARHNAVD+A LLPDG+ SEL+V   L+ RG
Sbjct: 187 RELSEQRVREGKHLPPLPAPGVYARHNAVDIAGLLPDGTPSELTVNRTLRDRG 239


>tr|B5HQC6|B5HQC6_9ACTO Tax_Id=463191 SubName: Full=NADH
           dehydrogenase subunit J;[Streptomyces sviceus ATCC
           29083]
          Length = 285

 Score =  237 bits (605), Expect = 8e-61
 Identities = 130/240 (54%), Positives = 159/240 (66%), Gaps = 4/240 (1%)

Query: 6   ASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMI 65
           A++LAADT    STGEA  FW+                   +SA+ LA TMIILAVFY+ 
Sbjct: 10  ATTLAADT----STGEAFQFWVLGTVAVIGALCTVFMRKAVHSALCLAGTMIILAVFYLA 65

Query: 66  QDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLI 125
             A FLG      YTGA           +GV +A+SL ET++GQR  AL+ G+GFG+LL 
Sbjct: 66  NGAYFLGVVQIVVYTGAIMMLFLFVVMLVGVTAADSLTETIKGQRWLALLCGLGFGILLF 125

Query: 126 AAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRER 185
           A IGN +   F GLT ANA GNVEGLA LIF++Y++AFE+T ALLITAA+GAMVL HRER
Sbjct: 126 AGIGNASLKQFNGLTQANAGGNVEGLATLIFTKYVFAFEITGALLITAAVGAMVLTHRER 185

Query: 186 FERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTRG 245
            ER  +QRE+++ R R G H  PLP PGVYARHNAVD+A LLPDG+ SEL+V   L+ RG
Sbjct: 186 TERALTQREMAERRVREGKHVPPLPAPGVYARHNAVDIAGLLPDGTPSELTVSKTLRERG 245


>tr|C9N6B9|C9N6B9_9ACTO Tax_Id=591167 SubName:
           Full=NADH-ubiquinone/plastoquinone oxidoreductase chain
           6;[Streptomyces flavogriseus ATCC 33331]
          Length = 284

 Score =  231 bits (590), Expect = 5e-59
 Identities = 133/243 (54%), Positives = 159/243 (65%), Gaps = 4/243 (1%)

Query: 5   LASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYM 64
           + ++LAA   T TSTGEAV FWI                   +SA+ LA TMI+LAVFY+
Sbjct: 1   MTAALAA-AATTTSTGEAVQFWILGTVAVVGALSTVLMKKAVHSALSLAGTMIVLAVFYL 59

Query: 65  IQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLL 124
              A FLG      YTGA           +GV +A+SLKETL+GQR  A   G+GFG+LL
Sbjct: 60  ANGAYFLGIVQVVVYTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAAACGLGFGILL 119

Query: 125 IAAIGNVAAGGFAGLTAANA--NGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAH 182
           IA IG  +   F GL AANA   GNVEGLA LIF++Y++AFE+T ALLITA +GAM+L H
Sbjct: 120 IAGIGQASLQSFNGLGAANAQHGGNVEGLANLIFTKYVFAFEITGALLITATVGAMLLTH 179

Query: 183 RERFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQ 242
           RER ER K+QRELSQER R   H  PLP PGVYARHNAVD+A LLPDG+ SEL+V   L+
Sbjct: 180 RERTERAKTQRELSQERVR-SSHLPPLPAPGVYARHNAVDIAGLLPDGTPSELTVMRTLR 238

Query: 243 TRG 245
            RG
Sbjct: 239 QRG 241


>tr|B1W510|B1W510_STRGG Tax_Id=455632 (nuoJ1)SubName: Full=Putative
           NADH dehydrogenase chain J;[Streptomyces griseus subsp.
           griseus]
          Length = 288

 Score =  231 bits (589), Expect = 6e-59
 Identities = 128/233 (54%), Positives = 155/233 (66%), Gaps = 3/233 (1%)

Query: 15  TVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXX 74
           T TSTGEA+ FWI                   +SA+ LA TMI+LAVFY+   A FLG  
Sbjct: 8   TTTSTGEAIQFWILGTVAVIGALSTVLLKRAVHSALSLAGTMIVLAVFYLANGAYFLGIV 67

Query: 75  XXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAG 134
               YTGA           +GV +A+SLKET++GQR  AL  G+GFG+LLIA IGN +  
Sbjct: 68  QIVVYTGAIMMLFLFVVMLVGVTAADSLKETIKGQRWLALGCGLGFGILLIAGIGNASLS 127

Query: 135 GFAGLTAANA--NGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFERRKSQ 192
            F GL AANA   GN+EGLA LIF++Y++AFE+T ALLITA +GAMVL HRER ER K+Q
Sbjct: 128 TFEGLGAANAAHGGNIEGLANLIFTKYVFAFEITGALLITATVGAMVLTHRERTERAKTQ 187

Query: 193 RELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTRG 245
           RE+S+ER R G H  PLP PGVYARHNAVD+  LLPDG+ SEL+V   L+ RG
Sbjct: 188 REMSEERVR-GKHLPPLPAPGVYARHNAVDIPGLLPDGTPSELTVMQTLRRRG 239


>tr|Q5YWD5|Q5YWD5_NOCFA Tax_Id=37329 (nuoJ)SubName: Full=Putative
           NADH dehydrogenase I chain J;[Nocardia farcinica]
          Length = 274

 Score =  228 bits (582), Expect = 4e-58
 Identities = 136/261 (52%), Positives = 158/261 (60%), Gaps = 15/261 (5%)

Query: 9   LAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDA 68
           LAA+ +T  STGEAV FWI                   +SA+ LA TMI LAV Y+ QDA
Sbjct: 5   LAAEPLTRASTGEAVQFWILAPLAVLGALGMVFAAKAVHSAICLAATMIALAVMYIAQDA 64

Query: 69  LFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAI 128
           LFLG      YTGA           +GVDSAESL+ETLRGQR+AA V+G+GFG+LL+A I
Sbjct: 65  LFLGVVQIVVYTGAVMMLFLFVLMLVGVDSAESLRETLRGQRIAATVVGIGFGLLLMAGI 124

Query: 129 G--------NVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVL 180
           G           A GF G         +  LA LIF RY+WAFELT ALLITA IGAMVL
Sbjct: 125 GIGIRESGVTFPATGFPGRDV------IAELAELIFLRYVWAFELTGALLITATIGAMVL 178

Query: 181 AHRERFERRKSQRELSQERFRPG-GHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPG 239
           AHR+ F  R +QRELS+ RFR G    TPLP PGVYARHNAVDV A LPDGS+ ELSV  
Sbjct: 179 AHRDHFGARTTQRELSRRRFRDGASRATPLPTPGVYARHNAVDVPARLPDGSFEELSVST 238

Query: 240 ILQTRGADGLQTPSPEAITGG 260
           IL+ R    L   +  ++  G
Sbjct: 239 ILRHRRTRALTEAAALSVGSG 259


>tr|D1A462|D1A462_THECU Tax_Id=471852 SubName:
           Full=NADH-ubiquinone/plastoquinone oxidoreductase chain
           6;[Thermomonospora curvata DSM 43183]
          Length = 308

 Score =  228 bits (582), Expect = 4e-58
 Identities = 121/232 (52%), Positives = 151/232 (65%), Gaps = 2/232 (0%)

Query: 15  TVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXX 74
           T    GE V FW+                   +SA+ LA+ M+ LAV Y +QDA FL   
Sbjct: 16  TDAQPGEPVVFWLLAVVSVAAALGMVFLRKAVHSALMLAVVMLSLAVLYAVQDAPFLAFV 75

Query: 75  XXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAG 134
               YTGA           +GV S +SL ET+RGQR+ A + G+GF VL+I+ +GN A  
Sbjct: 76  QVIVYTGAVLMLFLFVLMLVGVSSTDSLVETIRGQRIWAAIAGLGFAVLVISGLGNAALS 135

Query: 135 GFAGLTAANAN--GNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFERRKSQ 192
              GL AANA   GNV+GLA L+F++Y++AFE+TSALLITAA+GAMVLAHRER   + +Q
Sbjct: 136 DSMGLAAANAEAGGNVQGLARLLFTKYVFAFEVTSALLITAALGAMVLAHRERTSPKPTQ 195

Query: 193 RELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
           +ELS+ RFRPGGHPTPLP PG YARHNAVD+ ALLPDGS SELSV  ++  R
Sbjct: 196 KELSKRRFRPGGHPTPLPGPGTYARHNAVDMPALLPDGSISELSVNPVIARR 247


>tr|B5GWF6|B5GWF6_STRCL Tax_Id=443255 SubName: Full=NADH
           dehydrogenase subunit J;[Streptomyces clavuligerus ATCC
           27064]
          Length = 296

 Score =  228 bits (580), Expect = 7e-58
 Identities = 123/233 (52%), Positives = 155/233 (66%), Gaps = 2/233 (0%)

Query: 15  TVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXX 74
           + TSTGEAV FW+                   +SA+ LA TM++LAVFY+   A FLG  
Sbjct: 4   STTSTGEAVQFWVLGTVAVLGALCTILMKRAVHSALCLAGTMVVLAVFYLANGAYFLGVV 63

Query: 75  XXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAG 134
               YTGA           +GV +A+SLKETL+GQR  A + G+GFGVLL+A +GN +  
Sbjct: 64  QIVVYTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWLAALCGLGFGVLLVAGLGNASLN 123

Query: 135 GFAGLTAANAN--GNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFERRKSQ 192
            F GL AAN+   GNVEGLAALIF++Y++AFE+T ALLITA +GAMVL HRER E+ ++Q
Sbjct: 124 EFNGLGAANSEHGGNVEGLAALIFTKYVFAFEITGALLITATVGAMVLTHRERTEQARTQ 183

Query: 193 RELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTRG 245
           RE ++ER R G    PLP PGVYARHNAVD+A LLPDG+ SEL+V   L+ RG
Sbjct: 184 REQAEERVRAGVQLPPLPAPGVYARHNAVDIAGLLPDGTPSELTVSRTLRERG 236


>tr|B4V2W6|B4V2W6_9ACTO Tax_Id=465541 SubName: Full=NADH
           dehydrogenase subunit J;[Streptomyces sp. Mg1]
          Length = 270

 Score =  226 bits (577), Expect = 1e-57
 Identities = 126/238 (52%), Positives = 152/238 (63%)

Query: 8   SLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQD 67
           S  A   TVTSTGEAV FW+                   +SA+ LA TMIILAVFY+   
Sbjct: 2   STIAAAATVTSTGEAVQFWVLGTVAVIGALSTILMKKAVHSALSLAGTMIILAVFYLANG 61

Query: 68  ALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAA 127
           A FLG      YTGA           +GV +A+SLKETL+GQR  A++  +GFG LLIA 
Sbjct: 62  AYFLGVVQVIVYTGAIMMLFLFVVMLVGVTAADSLKETLKGQRWMAVLCALGFGTLLIAG 121

Query: 128 IGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFE 187
           I +     F GL   N+ G+VEGLA LIF++Y++AFE+T ALLITAA+GAMVL HRER E
Sbjct: 122 IAHARLNHFNGLGRINSGGHVEGLATLIFTKYVFAFEITGALLITAAVGAMVLTHRERTE 181

Query: 188 RRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTRG 245
           R  +QREL++ R R G    PLP PGVYARHNAVDVA LLPDG+ SEL+V   L+ RG
Sbjct: 182 RAATQRELAERRVREGVQLPPLPAPGVYARHNAVDVAGLLPDGTPSELTVSKTLRARG 239


>tr|B5GCW4|B5GCW4_9ACTO Tax_Id=465543 SubName: Full=NADH
           dehydrogenase subunit J;[Streptomyces sp. SPB74]
          Length = 283

 Score =  221 bits (562), Expect = 8e-56
 Identities = 122/242 (50%), Positives = 153/242 (63%), Gaps = 2/242 (0%)

Query: 6   ASSLAADTITV--TSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFY 63
           A+S   DT+    TSTGEAV FW+                   +SA+ LA TMI+LAVFY
Sbjct: 8   AASGQLDTLAAYHTSTGEAVQFWVLGVVAVIGALCTVLMPKAVHSALCLAGTMIVLAVFY 67

Query: 64  MIQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVL 123
           +   A FLG      YTGA           +GV +A+SLKET++GQR  A++  +GFG L
Sbjct: 68  LANGAYFLGIVQIVVYTGAVMMLFLFVVMLVGVTAADSLKETIKGQRWLAVLCFLGFGAL 127

Query: 124 LIAAIGNVAAGGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHR 183
           L+  IGN +   F G   ANA GNV+GLA  IF+ Y++AFE+T ALLITA +GAMVL HR
Sbjct: 128 LVGGIGNASVSQFQGTGRANAGGNVQGLAREIFTTYVFAFEITGALLITATVGAMVLTHR 187

Query: 184 ERFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQT 243
           ER ER  +QRE++++R R G H  PLP PGVYARHNAVDV  LLPDG+ SEL+V   L+ 
Sbjct: 188 ERTERALNQREMAEKRVREGKHLPPLPAPGVYARHNAVDVPGLLPDGTPSELTVNPTLRQ 247

Query: 244 RG 245
           RG
Sbjct: 248 RG 249


>tr|C7QCP3|C7QCP3_CATAD Tax_Id=479433 SubName:
           Full=NADH-ubiquinone/plastoquinone oxidoreductase chain
           6;[Catenulispora acidiphila]
          Length = 287

 Score =  218 bits (555), Expect = 5e-55
 Identities = 124/242 (51%), Positives = 151/242 (62%), Gaps = 6/242 (2%)

Query: 4   TLASSLAADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFY 63
           TLA+ L+      TS GEA  F++                   +SA+ LAMTMI LA+FY
Sbjct: 13  TLAAGLSK-----TSDGEAFQFYVLGAVALLGALGTVFSKKAVHSALSLAMTMICLAMFY 67

Query: 64  MIQDALFLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVL 123
           + Q A FLG      YTGA           +GV SA+SL ET++GQR  A++  + F VL
Sbjct: 68  LAQGAYFLGVVQIVVYTGAIMMLFLFVLMLVGVSSADSLVETIKGQRKLAVLAAIAFAVL 127

Query: 124 LIAAIGNVAAGGFAGLTAANANG-NVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAH 182
           ++ A+G    G FAG   ANA G NV+ LA LIFS+Y WAFE+TSALLITAA+GAMV+ H
Sbjct: 128 IMVALGRARLGTFAGSGPANAGGGNVKNLADLIFSKYFWAFEVTSALLITAAVGAMVMTH 187

Query: 183 RERFERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQ 242
           RER   RKSQREL ++R R G   TPLP PGVYARHNAVD+ ALLPDGS +E SV   LQ
Sbjct: 188 RERLVARKSQRELVEDRVRTGKRMTPLPTPGVYARHNAVDIPALLPDGSVAEDSVNATLQ 247

Query: 243 TR 244
            R
Sbjct: 248 AR 249


>tr|A0LRJ0|A0LRJ0_ACIC1 Tax_Id=351607 SubName:
           Full=NADH-ubiquinone/plastoquinone oxidoreductase, chain
           6;[Acidothermus cellulolyticus]
          Length = 275

 Score =  214 bits (546), Expect = 6e-54
 Identities = 117/254 (46%), Positives = 153/254 (60%), Gaps = 10/254 (3%)

Query: 17  TSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXXXX 76
           TS  EA  FW+                   ++A+ L   M+I A+FY  QDA  +     
Sbjct: 11  TSGTEAALFWVLGPIAVLAALGVVFARHTVHAALLLGGVMLIFAIFYAAQDAPLIAFVQI 70

Query: 77  XXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAGGF 136
             YTGA           IGVD+ E L ETLRGQR+A +  G+GF +LL+A +GN A G  
Sbjct: 71  IVYTGAVMMLFLFVLMLIGVDTKERLVETLRGQRLATVFAGIGFLLLLLAGLGNAAIGTS 130

Query: 137 AGLTAAN----------ANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERF 186
           AGL  AN            GN+  +A L+F+RY++AFE+TSALLITAA+GAMVLAHR+R 
Sbjct: 131 AGLHQANYPTNAVGQVQTGGNIYQVAKLLFTRYVFAFEVTSALLITAALGAMVLAHRQRV 190

Query: 187 ERRKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTRGA 246
            RR++Q E+ ++RFR G HPTPLP PGVYARHNAVD  ALLPDGS++ELSVP  ++    
Sbjct: 191 GRRRTQYEMMRDRFRRGAHPTPLPGPGVYARHNAVDTPALLPDGSFAELSVPSRIREISE 250

Query: 247 DGLQTPSPEAITGG 260
           +  + P P ++  G
Sbjct: 251 EQGRRPVPSSLGAG 264


>tr|A3THI4|A3THI4_9MICO Tax_Id=313589 SubName: Full=NADH
           dehydrogenase subunit J; EC=1.6.5.3;[Janibacter sp.
           HTCC2649]
          Length = 269

 Score =  208 bits (529), Expect = 6e-52
 Identities = 119/244 (48%), Positives = 147/244 (60%), Gaps = 3/244 (1%)

Query: 16  VTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXXX 75
           +TSTGEA+ FW+                   ++A+ +A+TMIIL VFY+ Q A FLG   
Sbjct: 1   MTSTGEAILFWVLAPLAVVGALGLIFARKAVHAALGMALTMIILGVFYLAQGADFLGVIQ 60

Query: 76  XXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAGG 135
              YTGA           +GVDS++S+ ETL+GQR AA V+ +G G LL+ AIG +  G 
Sbjct: 61  IFVYTGAVMMLFLFVVMLVGVDSSDSIVETLKGQRAAATVLTLGLGALLMGAIGRITIGD 120

Query: 136 FAG--LTAANAN-GNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFERRKSQ 192
                L A N + GNV G+A LIF RY+W FE TSALLITAA+ AMVLAHRER   R  Q
Sbjct: 121 APANKLDAINTDKGNVSGVAELIFGRYVWVFEATSALLITAALAAMVLAHRERLGSRPDQ 180

Query: 193 RELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTRGADGLQTP 252
           R  S+ R R G + + LP PGVYARHNAVD  ALLPDGS SELS+  +L  R   G   P
Sbjct: 181 RAWSERRIRSGENLSGLPVPGVYARHNAVDTPALLPDGSPSELSISRVLTARDQVGSAAP 240

Query: 253 SPEA 256
             +A
Sbjct: 241 WVDA 244


>tr|C1WGN6|C1WGN6_9ACTO Tax_Id=479435 SubName: Full=NADH
           dehydrogenase subunit J; EC=1.6.5.3;[Kribbella flavida
           DSM 17836]
          Length = 277

 Score =  199 bits (506), Expect = 3e-49
 Identities = 111/231 (48%), Positives = 142/231 (61%), Gaps = 4/231 (1%)

Query: 19  TGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXXXXXX 78
           TG    FW+                   +SA+ LA  MI LAV Y  QDA FL       
Sbjct: 3   TGGQFAFWLLAPVMVLAAIAMILVRKAVHSALLLATVMICLAVQYAAQDAPFLFAVQIIV 62

Query: 79  YTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAGGFAG 138
           YTGA           +GVD+++SL ET+RGQR+ A +  +GF VL++ A+GN   G   G
Sbjct: 63  YTGAILMLFLFVLMLVGVDASDSLVETIRGQRLLAGLAFLGFAVLVVFAVGNAVYGDPIG 122

Query: 139 LTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFERRKSQRELSQE 198
           L  A  +GN +G+A L+F +Y++AFE+TSALLITAA+GAM+LAHRER  R+K+QR+L++E
Sbjct: 123 LGQAQPDGNPKGIAQLLFGKYVFAFEVTSALLITAAMGAMMLAHRERLTRKKTQRDLAEE 182

Query: 199 RFR----PGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTRG 245
           R R     G HP PLP PGV ARHNAVD  ALLPDGS +  SV  +LQ RG
Sbjct: 183 RIRKYADTGVHPGPLPTPGVLARHNAVDTPALLPDGSIAPTSVSRVLQARG 233


>tr|A8M613|A8M613_SALAI Tax_Id=391037 SubName:
           Full=NADH-ubiquinone/plastoquinone oxidoreductase chain
           6;[Salinispora arenicola]
          Length = 256

 Score =  196 bits (498), Expect = 2e-48
 Identities = 112/227 (49%), Positives = 141/227 (62%), Gaps = 2/227 (0%)

Query: 20  GEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXXXXXXY 79
           GEAVTFWI                   +SA++L +TM+ L VFY++Q   F+G      Y
Sbjct: 16  GEAVTFWILAPLALLGAIGMVAARNAVHSALWLVLTMLCLGVFYVVQAGPFIGLVQIIVY 75

Query: 80  TGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAGGFA-G 138
           TGA           +G  +++SL ETLRGQR+AALV+G+GF  L+   +    AGG A G
Sbjct: 76  TGAIMMLFLFVLMLVGRGASDSLIETLRGQRIAALVLGIGFAGLVGTGLYRALAGGTAAG 135

Query: 139 LTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRE-RFERRKSQRELSQ 197
           LTAANA GNV+G+A L+F++Y+ AFELTSALLITAA+GAMVLAH E R E R  Q    +
Sbjct: 136 LTAANAEGNVQGVARLLFTKYVLAFELTSALLITAAVGAMVLAHVERRREDRMDQVATMK 195

Query: 198 ERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
            RFRPG +P P P PGV+A  ++V   ALLPDG  SE S P IL  R
Sbjct: 196 ARFRPGNYPGPKPGPGVFATSSSVATPALLPDGRLSERSTPEILPVR 242


>tr|C2AVH8|C2AVH8_TSUPA Tax_Id=521096 SubName: Full=NADH
           dehydrogenase subunit J; EC=1.6.5.3;[Tsukamurella
           paurometabola DSM 20162]
          Length = 256

 Score =  191 bits (486), Expect = 5e-47
 Identities = 112/229 (48%), Positives = 133/229 (58%), Gaps = 3/229 (1%)

Query: 19  TGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXXXXXX 78
           TGE V FW+                   YSA+ LA TMI+LAV Y+ Q A+FLG      
Sbjct: 2   TGEEVAFWVVAVPAVLFALGVVVASKAVYSALCLAATMILLAVAYLSQGAMFLGVVQVVV 61

Query: 79  YTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAG---G 135
           YTGA           +GVDS++SL ETLRG RVAA V G GFG+LL+  +          
Sbjct: 62  YTGAVMMLFLFVVMLVGVDSSDSLVETLRGHRVAAAVAGTGFGLLLVTLLARAVLPVPRP 121

Query: 136 FAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFERRKSQREL 195
             G+       +VE LA  +F RY+WAFELT+ALLITA +GAM+LAHRE+     SQRE 
Sbjct: 122 VDGVAPQYPPNSVEALADTVFVRYVWAFELTAALLITATLGAMILAHREKLTAPLSQREQ 181

Query: 196 SQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
           S  RFR G   TPLPNPGVYAR NAVD+ ALLPDGS +  SV   L  R
Sbjct: 182 SILRFREGRRATPLPNPGVYARGNAVDLPALLPDGSPAPDSVNRTLTPR 230


>tr|C4E4P8|C4E4P8_STRRS Tax_Id=479432 SubName: Full=NADH
           dehydrogenase subunit J; EC=1.6.5.3;[Streptosporangium
           roseum DSM 43021]
          Length = 270

 Score =  191 bits (484), Expect = 9e-47
 Identities = 108/238 (45%), Positives = 140/238 (58%), Gaps = 4/238 (1%)

Query: 20  GEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXXXXXXY 79
           GE +TFW+                   YSA+ L + M+ LAV Y +QDA FL       Y
Sbjct: 2   GETITFWVLAVVSVSAALGLVFSRKAVYSALMLGVVMLSLAVLYAVQDAPFLAAVQIIVY 61

Query: 80  TGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAGGFAGL 139
           TGA           +GVDSA+SL ET++GQR  A + G+GF  LL    GN+      G+
Sbjct: 62  TGAVMMLFLFVLMLVGVDSADSLVETIKGQRFWATIAGLGFAALLALGAGNMVFAPAKGV 121

Query: 140 TAA--NANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFERRKSQRELSQ 197
             A   A GNV  LA LIF+R+++AFE+TSALLITAA+GAMVLAHRER   + +QR+L++
Sbjct: 122 GGAVQEAGGNVPALAQLIFTRHVFAFEVTSALLITAALGAMVLAHRERVRPKATQRDLAR 181

Query: 198 ERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTRG-ADGLQTPSP 254
            RF  G  P+PLP PG YA HNA+D+ ALLPDGS S  S+  +L      DG++   P
Sbjct: 182 ARF-TGPQPSPLPGPGTYALHNAIDMPALLPDGSVSPKSINRVLARHDQEDGVRPTDP 238


>tr|A1SE36|A1SE36_NOCSJ Tax_Id=196162 SubName:
           Full=NADH-ubiquinone/plastoquinone oxidoreductase, chain
           6; Flags: Precursor;[Nocardioides sp.]
          Length = 275

 Score =  189 bits (481), Expect = 2e-46
 Identities = 100/227 (44%), Positives = 139/227 (61%), Gaps = 4/227 (1%)

Query: 23  VTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXXXXXXYTGA 82
           + FWI                   ++A+ LA+ M+ LAV Y   +A FL       YTGA
Sbjct: 2   IAFWILAPVMVIAALGLLFVRKAVHAALLLAVVMMSLAVLYAALEAPFLFAVQIIVYTGA 61

Query: 83  XXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAGGFAGLTAA 142
                      +GVD+++S+ ET+RGQRV A + G+G G++++  +  ++ G   GL  A
Sbjct: 62  ILMLFLFVLMLVGVDASDSVVETIRGQRVLAAIAGLGLGLVMVLGLSQISLGTAVGLEDA 121

Query: 143 NANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFERRKSQRELSQERFRP 202
           N+ GN++ LA ++FSRY++AFE+TSALLITAA+GAMVLAHRER   + +Q  L+ +R + 
Sbjct: 122 NSGGNIQALANILFSRYVFAFEVTSALLITAAVGAMVLAHRERLTPKPTQMSLAAQRMKD 181

Query: 203 ----GGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTRG 245
               G HP PLP PGVYARHNAVD  ALLPDG+ +E SV  +L  RG
Sbjct: 182 YAERGTHPGPLPPPGVYARHNAVDTPALLPDGTAAESSVSRVLAARG 228


>tr|A4XC29|A4XC29_SALTO Tax_Id=369723 SubName:
           Full=NADH-ubiquinone/plastoquinone oxidoreductase, chain
           6;[Salinispora tropica]
          Length = 256

 Score =  189 bits (479), Expect = 3e-46
 Identities = 109/229 (47%), Positives = 138/229 (60%), Gaps = 2/229 (0%)

Query: 18  STGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXXXXX 77
           S GEAVTFWI                   +SA+ L +TM+ L +FY++Q   F+G     
Sbjct: 14  SGGEAVTFWILAPLALIGAIGMVAARNAVHSALMLVLTMLCLGIFYVLQAGPFIGVVQII 73

Query: 78  XYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAGGFA 137
            YTGA           +G  +++SL ETLRGQR+AALV+GVGF  L+   +    AG  A
Sbjct: 74  VYTGAIMMLFLFVLMLVGRGASDSLIETLRGQRIAALVLGVGFAGLVGTGMYRALAGSTA 133

Query: 138 -GLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRE-RFERRKSQREL 195
            GLT ANA GNV+G+A L+F++Y+ AFELTSALLITAA+GAMVLAH E R E R  Q   
Sbjct: 134 VGLTTANAEGNVQGIARLLFTKYVLAFELTSALLITAAVGAMVLAHIERRREDRMDQVAT 193

Query: 196 SQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
            + RFRPG +P P P PGV+A  ++V   A LPDG  +E S P IL  R
Sbjct: 194 MKARFRPGNYPGPKPGPGVFATSSSVATPARLPDGRLAEQSTPEILPVR 242


>tr|Q2JFL1|Q2JFL1_FRASC Tax_Id=106370 SubName:
           Full=NADH-ubiquinone/plastoquinone oxidoreductase, chain
           6; Flags: Precursor;[Frankia sp.]
          Length = 267

 Score =  187 bits (474), Expect = 1e-45
 Identities = 104/222 (46%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 10  AADTITVTSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDAL 69
           AA  IT TSTGEA TFWI                   +SA+ L   +  +AVFY+IQ+A 
Sbjct: 8   AAGDITSTSTGEAATFWILSPVAVLAALGMVMVRSAVHSALLLVANLFCVAVFYLIQEAP 67

Query: 70  FLGXXXXXXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIG 129
           FLG      Y GA           +GVDS++SL ET+RGQR+ A+V G+GF  LL   IG
Sbjct: 68  FLGFVQIIVYAGAIMVLFLFVLMLVGVDSSDSLVETIRGQRLGAIVFGLGFAGLLAFPIG 127

Query: 130 NVAAGGFA-GLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFER 188
           +   GG A GL+ AN  GNV+ +  L+F+ Y++ FE  SALL+ AAIG MVL HRER   
Sbjct: 128 SAIDGGSAKGLSEANTGGNVQAIGRLLFTDYVFVFEAISALLVVAAIGTMVLGHREREGG 187

Query: 189 RKSQRELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDG 230
           R SQRE  + RF  G   TPLP PGV+ARH++ D   LLP G
Sbjct: 188 RISQREWMRRRFTEGRQVTPLPGPGVFARHDSADTLGLLPGG 229


>tr|C1RIQ3|C1RIQ3_9CELL Tax_Id=446466 SubName: Full=NADH
           dehydrogenase subunit J; EC=1.6.5.3;[Cellulomonas
           flavigena DSM 20109]
          Length = 325

 Score =  184 bits (466), Expect = 1e-44
 Identities = 101/231 (43%), Positives = 131/231 (56%)

Query: 17  TSTGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXXXX 76
           TST EAV FW                    ++A+ +   MI LA  Y+ Q A FLG    
Sbjct: 21  TSTAEAVLFWTLGPLMVLAALGLLLARKAVHAALAVIFIMISLAFLYVAQGAEFLGVVQV 80

Query: 77  XXYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAGGF 136
             YTGA           +GVD ++SL ET+RGQR   L+ G+G GV+L   +G    G  
Sbjct: 81  VVYTGAVMMLFLFVLMLVGVDRSDSLVETIRGQRWIGLLAGLGLGVVLAGVVGRATYGAP 140

Query: 137 AGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFERRKSQRELS 196
            GL  AN   N E +A +IF +++ A E+  ALL+TAA+GA+VL HR R   R +QRE +
Sbjct: 141 EGLATANQPSNPEAVAHVIFGQHVLAMEVVGALLVTAALGALVLTHRGRLAPRVTQRERA 200

Query: 197 QERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTRGAD 247
           + R R G HP  LP PGVYARHNA+DV ALLPDG+  E SVP +L+ RG +
Sbjct: 201 ERRLRDGQHPVSLPAPGVYARHNAMDVPALLPDGTPLESSVPRVLRVRGQE 251


>tr|C1YIA3|C1YIA3_NOCDA Tax_Id=446468 SubName: Full=NADH
           dehydrogenase subunit J; EC=1.6.5.3;[Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 349

 Score =  183 bits (464), Expect = 2e-44
 Identities = 109/243 (44%), Positives = 140/243 (57%), Gaps = 4/243 (1%)

Query: 20  GEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXXXXXXY 79
           GEA  FWI                   +SAM +A+TM+ LA+FY I  A FL       Y
Sbjct: 26  GEATAFWILGAVVLLGALGVVFSRKAVHSAMSMALTMVGLAIFYGINAAPFLMVVQIVVY 85

Query: 80  TGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGNVAAGGFAGL 139
           TGA           IGV SA+SL ETL GQR+   V+ + F   L   I  +A G   GL
Sbjct: 86  TGAVLMLFLFVLMLIGVSSADSLVETLSGQRLMTAVVALCFVGALTTGITRIAVGDPVGL 145

Query: 140 T--AANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFERRKSQRELSQ 197
           T  AA A G +  +A  +  RY+ AFE T ALLITA +GAMVLAH  R ++R++QRE+++
Sbjct: 146 TEGAAAAGGTIPWIAGELLLRYVVAFEATGALLITAVLGAMVLAHTARTKKRRTQREIAE 205

Query: 198 ERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTRGADGLQTPSPEAI 257
           +R R G HPTPLP PG YARHNA+D+ ALLPDG+ S+LS+  +L  R A   Q+  PE +
Sbjct: 206 DRIR-GDHPTPLPGPGTYARHNAIDMPALLPDGTVSQLSLNPVLAAR-APEYQSRVPETV 263

Query: 258 TGG 260
             G
Sbjct: 264 RAG 266


>tr|C4RKR7|C4RKR7_9ACTO Tax_Id=219305 SubName: Full=NADH
           dehydrogenase subunit J;[Micromonospora sp. ATCC 39149]
          Length = 256

 Score =  182 bits (463), Expect = 2e-44
 Identities = 106/232 (45%), Positives = 140/232 (60%), Gaps = 8/232 (3%)

Query: 18  STGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXXXXX 77
           S GE VTFWI                   +SA++L +TM+ L VFY++Q   F+G     
Sbjct: 14  SGGEEVTFWILAPLALLGAIGMIAARNAVHSALWLVLTMLCLGVFYVLQAGPFIGMVQII 73

Query: 78  XYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVL----LIAAIGNVAA 133
            YTGA           +G D+++SL ETLRGQR+AA+V+G+GF  L    L   +G V+A
Sbjct: 74  VYTGAIMMLFLFVLMLVGRDASDSLIETLRGQRIAAVVLGLGFAGLVGGGLYRGLGGVSA 133

Query: 134 GGFAGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRE-RFERRKSQ 192
               GL  ANA GNV+G+A L+F++Y++AFELTSALLITAA+GAMVLAH E R E +  Q
Sbjct: 134 ---VGLEQANAEGNVQGIARLLFTKYVFAFELTSALLITAAVGAMVLAHIERRREDKMDQ 190

Query: 193 RELSQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
               + RF PG +P P P PGV+A  ++V   A LPDG  +E S+P IL  R
Sbjct: 191 IATMKARFAPGNYPGPKPGPGVFATSSSVATPARLPDGRLTERSIPEILPAR 242


>tr|C4DMS3|C4DMS3_9ACTO Tax_Id=446470 SubName: Full=NADH
           dehydrogenase subunit J; EC=1.6.5.3;[Stackebrandtia
           nassauensis DSM 44728]
          Length = 256

 Score =  181 bits (458), Expect = 9e-44
 Identities = 102/229 (44%), Positives = 139/229 (60%), Gaps = 2/229 (0%)

Query: 18  STGEAVTFWIXXXXXXXXXXXXXXXXXXXYSAMFLAMTMIILAVFYMIQDALFLGXXXXX 77
           +TGEA+TFWI                   +SA+ LA TM+ L V YM+Q   F+G     
Sbjct: 13  TTGEAITFWILAPIILGGAIGMVLARSAVHSALLLACTMLGLGVIYMLQSGPFIGFVQII 72

Query: 78  XYTGAXXXXXXXXXXXIGVDSAESLKETLRGQRVAALVIGVGFGVLLIAAIGN-VAAGGF 136
            YTGA           +G DS +SL ETLRGQR+AA+ +G+G  +LL   +   V A   
Sbjct: 73  VYTGAIMMLFLFVIMLVGRDSKDSLLETLRGQRIAAIGLGIGMALLLCTGLARGVGAVSA 132

Query: 137 AGLTAANANGNVEGLAALIFSRYLWAFELTSALLITAAIGAMVLAHRERFERRK-SQREL 195
            GL  ANANGNV+G+AA +F++Y++AFE+TSALLITAA+GAMVLAH E+ +  K  Q++ 
Sbjct: 133 VGLDEANANGNVKGIAAELFTKYVFAFEVTSALLITAAVGAMVLAHVEKAKEDKLGQKKS 192

Query: 196 SQERFRPGGHPTPLPNPGVYARHNAVDVAALLPDGSYSELSVPGILQTR 244
           S+ RF  G +P P   PGV+A  ++V   ALLPDG+ SE S+  ++  R
Sbjct: 193 SRLRFAKGNYPGPKAGPGVFATSDSVATPALLPDGTESERSISPVVPPR 241


  Database: Amellifera_nr
    Posted date:  Feb 5, 2010  5:10 AM
  Number of letters in database: 3,846,993,858
  Number of sequences in database:  11,275,203
  
Lambda     K      H
   0.320    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11275203
Number of Hits to DB: 1,526,028,977
Number of extensions: 58593064
Number of successful extensions: 207413
Number of sequences better than 10.0: 867
Number of HSP's gapped: 209031
Number of HSP's successfully gapped: 867
Length of query: 262
Length of database: 3,846,993,858
Length adjustment: 135
Effective length of query: 127
Effective length of database: 2,324,841,453
Effective search space: 295254864531
Effective search space used: 295254864531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)