BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MMAR_1801
         (174 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,275,203 sequences; 3,846,993,858 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

sp|B2HJL4|RIMM_MYCMM Tax_Id=216594 (rimM)RecName: Full=Ribosome ...   344   2e-93
sp|A0PQ65|RIMM_MYCUA Tax_Id=362242 (rimM)RecName: Full=Ribosome ...   342   7e-93
sp|O33016|RIMM_MYCLE Tax_Id=1769 (rimM)RecName: Full=Ribosome ma...   263   5e-69
sp|B8ZRW7|RIMM_MYCLB Tax_Id=561304 (rimM)RecName: Full=Ribosome ...   263   5e-69
sp|A0QJ46|RIMM_MYCA1 Tax_Id=243243 (rimM)RecName: Full=Ribosome ...   253   7e-66
sp|Q73VN8|RIMM_MYCPA Tax_Id=1770 (rimM)RecName: Full=Ribosome ma...   251   2e-65
sp|P66653|RIMM_MYCTU Tax_Id=1773 (rimM)RecName: Full=Ribosome ma...   250   4e-65
sp|A5U6R2|RIMM_MYCTA Tax_Id=419947 (rimM)RecName: Full=Ribosome ...   250   4e-65
sp|C1AG22|RIMM_MYCBT Tax_Id=561275 (rimM)RecName: Full=Ribosome ...   250   4e-65
sp|A1KMQ1|RIMM_MYCBP Tax_Id=410289 (rimM)RecName: Full=Ribosome ...   250   4e-65
sp|P66654|RIMM_MYCBO Tax_Id=1765 (rimM)RecName: Full=Ribosome ma...   250   4e-65
tr|C6DWE7|C6DWE7_MYCTK Tax_Id=478434 SubName: Full=16S rRNA proc...   250   4e-65
tr|A5WRF9|A5WRF9_MYCTF Tax_Id=336982 SubName: Full=16S rRNA proc...   250   4e-65
tr|A4KKH0|A4KKH0_MYCTU Tax_Id=395095 SubName: Full=16S rRNA proc...   250   4e-65
tr|A2VLN6|A2VLN6_MYCTU Tax_Id=348776 SubName: Full=16S rRNA proc...   250   4e-65
sp|Q1BAK8|RIMM_MYCSS Tax_Id=164756 (rimM)RecName: Full=Ribosome ...   233   8e-60
sp|A1UEF4|RIMM_MYCSK Tax_Id=189918 (rimM)RecName: Full=Ribosome ...   233   8e-60
sp|A3PXV8|RIMM_MYCSJ Tax_Id=164757 (rimM)RecName: Full=Ribosome ...   233   8e-60
sp|A1T754|RIMM_MYCVP Tax_Id=350058 (rimM)RecName: Full=Ribosome ...   231   3e-59
sp|A4TE78|RIMM_MYCGI Tax_Id=350054 (rimM)RecName: Full=Ribosome ...   229   1e-58
sp|B1MDI4|RIMM_MYCA9 Tax_Id=561007 (rimM)RecName: Full=Ribosome ...   221   3e-56
sp|A0QV39|RIMM_MYCS2 Tax_Id=246196 (rimM)RecName: Full=Ribosome ...   218   2e-55
sp|Q0S2C6|RIMM_RHOSR Tax_Id=101510 (rimM)RecName: Full=Ribosome ...   204   2e-51
sp|C1B2R9|RIMM_RHOOB Tax_Id=632772 (rimM)RecName: Full=Ribosome ...   203   5e-51
sp|C0ZXR9|RIMM_RHOE4 Tax_Id=234621 (rimM)RecName: Full=Ribosome ...   202   9e-51
tr|C3JLT7|C3JLT7_RHOER Tax_Id=596309 (rimM)SubName: Full=16S rRN...   202   9e-51
sp|Q5YS37|RIMM_NOCFA Tax_Id=37329 (rimM)RecName: Full=Ribosome m...   200   4e-50
tr|C2ANN1|C2ANN1_TSUPA Tax_Id=521096 SubName: Full=16S rRNA proc...   198   2e-49
tr|D0LAM4|D0LAM4_GORB4 Tax_Id=526226 SubName: Full=16S rRNA proc...   173   6e-42
tr|C7MY86|C7MY86_SACVD Tax_Id=471857 SubName: Full=16S rRNA proc...   170   6e-41
sp|A4FME9|RIMM_SACEN Tax_Id=405948 (rimM)RecName: Full=Ribosome ...   168   2e-40
tr|C4E261|C4E261_STRRS Tax_Id=479432 SubName: Full=16S rRNA proc...   165   2e-39
tr|C1YHQ2|C1YHQ2_NOCDA Tax_Id=446468 SubName: Full=16S rRNA proc...   155   2e-36
sp|A0LV71|RIMM_ACIC1 Tax_Id=351607 (rimM)RecName: Full=Ribosome ...   153   8e-36
tr|C6WEV7|C6WEV7_ACTMD Tax_Id=446462 SubName: Full=16S rRNA proc...   153   8e-36
tr|D1AB16|D1AB16_THECU Tax_Id=471852 SubName: Full=16S rRNA proc...   148   3e-34
sp|Q8NNX5|RIMM_CORGL Tax_Id=1718 (rimM)RecName: Full=Ribosome ma...   147   3e-34
tr|C1UIJ6|C1UIJ6_9ACTO Tax_Id=526225 SubName: Full=16S rRNA proc...   147   4e-34
sp|A4QFB9|RIMM_CORGB Tax_Id=340322 (rimM)RecName: Full=Ribosome ...   145   2e-33
sp|Q47S65|RIMM_THEFY Tax_Id=269800 (rimM)RecName: Full=Ribosome ...   145   2e-33
sp|Q8FP33|RIMM_COREF Tax_Id=152794 (rimM)RecName: Full=Ribosome ...   145   2e-33
tr|C8NPR2|C8NPR2_COREF Tax_Id=196164 (rimM)SubName: Full=16S rRN...   145   2e-33
tr|C4RC83|C4RC83_9ACTO Tax_Id=219305 SubName: Full=Ribosome matu...   144   4e-33
tr|C2BNS9|C2BNS9_9CORY Tax_Id=525264 (rimM)SubName: Full=16S rRN...   141   2e-32
tr|C6RAN1|C6RAN1_9CORY Tax_Id=553206 (rimM)SubName: Full=16S rRN...   140   4e-32
sp|A4X4H7|RIMM_SALTO Tax_Id=369723 (rimM)RecName: Full=Ribosome ...   138   2e-31
tr|B5HFI8|B5HFI8_STRPR Tax_Id=457429 SubName: Full=16S rRNA proc...   137   4e-31
sp|P0A4D4|RIMM_STRLI Tax_Id=1916 (rimM)RecName: Full=Ribosome ma...   137   6e-31
sp|P0A4D3|RIMM_STRCO Tax_Id=1902 (rimM)RecName: Full=Ribosome ma...   137   6e-31
tr|C2CNR6|C2CNR6_CORST Tax_Id=525268 (rimM)SubName: Full=16S rRN...   137   6e-31

>sp|B2HJL4|RIMM_MYCMM Tax_Id=216594 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium marinum]
          Length = 174

 Score =  344 bits (882), Expect = 2e-93
 Identities = 174/174 (100%), Positives = 174/174 (100%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG
Sbjct: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
           ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV
Sbjct: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120

Query: 121 VAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDLGS 174
           VAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDLGS
Sbjct: 121 VAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDLGS 174


>sp|A0PQ65|RIMM_MYCUA Tax_Id=362242 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium ulcerans]
          Length = 174

 Score =  342 bits (878), Expect = 7e-93
 Identities = 173/174 (99%), Positives = 174/174 (100%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG
Sbjct: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
           ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPI+EPDTYYDHQLEGLRVRTTAGQDVGV
Sbjct: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIEEPDTYYDHQLEGLRVRTTAGQDVGV 120

Query: 121 VAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDLGS 174
           VAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDLGS
Sbjct: 121 VAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDLGS 174


>sp|O33016|RIMM_MYCLE Tax_Id=1769 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium leprae]
          Length = 179

 Score =  263 bits (672), Expect = 5e-69
 Identities = 136/172 (79%), Positives = 144/172 (83%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           +EL IGRVVKAHGI GEVVVEIRTD+P  RF PG  LRAK    GG  R Y +   REHG
Sbjct: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
           ARLLVRLAGV+DRD AD LRGSLFVIDS DLPPIDEPDTYYDHQLEGL+VRT  G+DVGV
Sbjct: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127

Query: 121 VAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VAEVLHT AGELLAV+CDSGEVLVPFVGAIV  VSLDD I+EIDPP GLLDL
Sbjct: 128 VAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179


>sp|B8ZRW7|RIMM_MYCLB Tax_Id=561304 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium leprae]
          Length = 179

 Score =  263 bits (672), Expect = 5e-69
 Identities = 136/172 (79%), Positives = 144/172 (83%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           +EL IGRVVKAHGI GEVVVEIRTD+P  RF PG  LRAK    GG  R Y +   REHG
Sbjct: 8   LELTIGRVVKAHGIGGEVVVEIRTDDPASRFCPGNILRAKDFPRGGPERRYTVVYAREHG 67

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
           ARLLVRLAGV+DRD AD LRGSLFVIDS DLPPIDEPDTYYDHQLEGL+VRT  G+DVGV
Sbjct: 68  ARLLVRLAGVSDRDAADALRGSLFVIDSLDLPPIDEPDTYYDHQLEGLQVRTMMGRDVGV 127

Query: 121 VAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VAEVLHT AGELLAV+CDSGEVLVPFVGAIV  VSLDD I+EIDPP GLLDL
Sbjct: 128 VAEVLHTAAGELLAVRCDSGEVLVPFVGAIVKLVSLDDGIVEIDPPKGLLDL 179


>sp|A0QJ46|RIMM_MYCA1 Tax_Id=243243 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium avium]
          Length = 175

 Score =  253 bits (645), Expect = 7e-66
 Identities = 132/176 (75%), Positives = 147/176 (83%), Gaps = 5/176 (2%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           MEL +GRVVKAHGI+GE+VVEIRTD+P  RF PG +LRAK SR GG  R+ VIE  REHG
Sbjct: 1   MELTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKPSR-GGPERSCVIESAREHG 59

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLLVRLAGV DRD AD LRG+LFV+DSA+LP IDEPDTYYDHQLEGL+VRTT GQ VG 
Sbjct: 60  GRLLVRLAGVTDRDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGQRVGA 119

Query: 121 VAEVLHTGAGELLAVKCDSG----EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VAEVLHT AGELLAV+ D+     EVLVPFV AIVT+VSLDD ++EIDPPDGLLDL
Sbjct: 120 VAEVLHTAAGELLAVRDDADGAPREVLVPFVSAIVTAVSLDDGLIEIDPPDGLLDL 175


>sp|Q73VN8|RIMM_MYCPA Tax_Id=1770 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium paratuberculosis]
          Length = 175

 Score =  251 bits (641), Expect = 2e-65
 Identities = 131/176 (74%), Positives = 147/176 (83%), Gaps = 5/176 (2%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           MEL +GRVVKAHGI+GE+VVEIRTD+P  RF PG +LRAK SR GG  R+ VIE  REHG
Sbjct: 1   MELTVGRVVKAHGISGEIVVEIRTDDPAARFAPGNTLRAKPSR-GGPERSCVIESAREHG 59

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLLVRLAGV DRD AD LRG+LFV+DSA+LP IDEPDTYYDHQLEGL+VRTT G+ VG 
Sbjct: 60  GRLLVRLAGVTDRDAADALRGTLFVVDSAELPDIDEPDTYYDHQLEGLQVRTTGGRRVGA 119

Query: 121 VAEVLHTGAGELLAVKCDSG----EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VAEVLHT AGELLAV+ D+     EVLVPFV AIVT+VSLDD ++EIDPPDGLLDL
Sbjct: 120 VAEVLHTAAGELLAVRDDADGAPREVLVPFVSAIVTAVSLDDGLIEIDPPDGLLDL 175


>sp|P66653|RIMM_MYCTU Tax_Id=1773 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium tuberculosis]
          Length = 176

 Score =  250 bits (639), Expect = 4e-65
 Identities = 131/175 (74%), Positives = 144/175 (82%), Gaps = 3/175 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGG---TGRNYVIEGVR 57
           MELV+GRVVK+HG+TGEVVVEIRTD+P  RF PG  LRAK   DGG   +  +YVIE VR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 58  EHGARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQD 117
           +HG RLLVRLAGV DRD AD LRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G+ 
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 118 VGVVAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VGVV EV+HT AGELLAVK DS EVLVPFV AIVTSVSLDD I+EIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>sp|A5U6R2|RIMM_MYCTA Tax_Id=419947 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium tuberculosis]
          Length = 176

 Score =  250 bits (639), Expect = 4e-65
 Identities = 131/175 (74%), Positives = 144/175 (82%), Gaps = 3/175 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGG---TGRNYVIEGVR 57
           MELV+GRVVK+HG+TGEVVVEIRTD+P  RF PG  LRAK   DGG   +  +YVIE VR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 58  EHGARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQD 117
           +HG RLLVRLAGV DRD AD LRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G+ 
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 118 VGVVAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VGVV EV+HT AGELLAVK DS EVLVPFV AIVTSVSLDD I+EIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>sp|C1AG22|RIMM_MYCBT Tax_Id=561275 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium bovis]
          Length = 176

 Score =  250 bits (639), Expect = 4e-65
 Identities = 131/175 (74%), Positives = 144/175 (82%), Gaps = 3/175 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGG---TGRNYVIEGVR 57
           MELV+GRVVK+HG+TGEVVVEIRTD+P  RF PG  LRAK   DGG   +  +YVIE VR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 58  EHGARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQD 117
           +HG RLLVRLAGV DRD AD LRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G+ 
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 118 VGVVAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VGVV EV+HT AGELLAVK DS EVLVPFV AIVTSVSLDD I+EIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>sp|A1KMQ1|RIMM_MYCBP Tax_Id=410289 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium bovis]
          Length = 176

 Score =  250 bits (639), Expect = 4e-65
 Identities = 131/175 (74%), Positives = 144/175 (82%), Gaps = 3/175 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGG---TGRNYVIEGVR 57
           MELV+GRVVK+HG+TGEVVVEIRTD+P  RF PG  LRAK   DGG   +  +YVIE VR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 58  EHGARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQD 117
           +HG RLLVRLAGV DRD AD LRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G+ 
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 118 VGVVAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VGVV EV+HT AGELLAVK DS EVLVPFV AIVTSVSLDD I+EIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>sp|P66654|RIMM_MYCBO Tax_Id=1765 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium bovis]
          Length = 176

 Score =  250 bits (639), Expect = 4e-65
 Identities = 131/175 (74%), Positives = 144/175 (82%), Gaps = 3/175 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGG---TGRNYVIEGVR 57
           MELV+GRVVK+HG+TGEVVVEIRTD+P  RF PG  LRAK   DGG   +  +YVIE VR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 58  EHGARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQD 117
           +HG RLLVRLAGV DRD AD LRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G+ 
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 118 VGVVAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VGVV EV+HT AGELLAVK DS EVLVPFV AIVTSVSLDD I+EIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|C6DWE7|C6DWE7_MYCTK Tax_Id=478434 SubName: Full=16S rRNA
           processing protein rimM;[Mycobacterium tuberculosis]
          Length = 176

 Score =  250 bits (639), Expect = 4e-65
 Identities = 131/175 (74%), Positives = 144/175 (82%), Gaps = 3/175 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGG---TGRNYVIEGVR 57
           MELV+GRVVK+HG+TGEVVVEIRTD+P  RF PG  LRAK   DGG   +  +YVIE VR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 58  EHGARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQD 117
           +HG RLLVRLAGV DRD AD LRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G+ 
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 118 VGVVAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VGVV EV+HT AGELLAVK DS EVLVPFV AIVTSVSLDD I+EIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|A5WRF9|A5WRF9_MYCTF Tax_Id=336982 SubName: Full=16S rRNA
           processing protein rimM;[Mycobacterium tuberculosis]
          Length = 176

 Score =  250 bits (639), Expect = 4e-65
 Identities = 131/175 (74%), Positives = 144/175 (82%), Gaps = 3/175 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGG---TGRNYVIEGVR 57
           MELV+GRVVK+HG+TGEVVVEIRTD+P  RF PG  LRAK   DGG   +  +YVIE VR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 58  EHGARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQD 117
           +HG RLLVRLAGV DRD AD LRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G+ 
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 118 VGVVAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VGVV EV+HT AGELLAVK DS EVLVPFV AIVTSVSLDD I+EIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|A4KKH0|A4KKH0_MYCTU Tax_Id=395095 SubName: Full=16S rRNA
           processing protein rimM;[Mycobacterium tuberculosis str.
           Haarlem]
          Length = 176

 Score =  250 bits (639), Expect = 4e-65
 Identities = 131/175 (74%), Positives = 144/175 (82%), Gaps = 3/175 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGG---TGRNYVIEGVR 57
           MELV+GRVVK+HG+TGEVVVEIRTD+P  RF PG  LRAK   DGG   +  +YVIE VR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 58  EHGARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQD 117
           +HG RLLVRLAGV DRD AD LRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G+ 
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 118 VGVVAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VGVV EV+HT AGELLAVK DS EVLVPFV AIVTSVSLDD I+EIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>tr|A2VLN6|A2VLN6_MYCTU Tax_Id=348776 SubName: Full=16S rRNA
           processing protein rimM;[Mycobacterium tuberculosis C]
          Length = 176

 Score =  250 bits (639), Expect = 4e-65
 Identities = 131/175 (74%), Positives = 144/175 (82%), Gaps = 3/175 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGG---TGRNYVIEGVR 57
           MELV+GRVVK+HG+TGEVVVEIRTD+P  RF PG  LRAK   DGG   +  +YVIE VR
Sbjct: 1   MELVVGRVVKSHGVTGEVVVEIRTDDPADRFAPGTRLRAKGPFDGGAEGSAVSYVIESVR 60

Query: 58  EHGARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQD 117
           +HG RLLVRLAGV DRD AD LRGSLFVID+ DLPPIDEPDTYYDHQL GL V+T  G+ 
Sbjct: 61  QHGGRLLVRLAGVADRDAADALRGSLFVIDADDLPPIDEPDTYYDHQLVGLMVQTATGEG 120

Query: 118 VGVVAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VGVV EV+HT AGELLAVK DS EVLVPFV AIVTSVSLDD I+EIDPP GLL+L
Sbjct: 121 VGVVTEVVHTAAGELLAVKRDSDEVLVPFVRAIVTSVSLDDGIVEIDPPHGLLNL 175


>sp|Q1BAK8|RIMM_MYCSS Tax_Id=164756 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium sp.]
          Length = 173

 Score =  233 bits (593), Expect = 8e-60
 Identities = 119/173 (68%), Positives = 138/173 (79%), Gaps = 2/173 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           M+LVIGRV KAHG+TGE+VVE+RTD+PD RF PGA LR +  R GG  R +V+E VR HG
Sbjct: 1   MDLVIGRVAKAHGVTGELVVEVRTDDPDARFVPGARLRGRAPR-GGAERAFVVESVRPHG 59

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLL+RL GV DR  AD LRG++F++DSADLPPI+EPD YYDHQLEGL VRT  G DVG 
Sbjct: 60  GRLLLRLDGVADRTAADALRGTVFLVDSADLPPIEEPDEYYDHQLEGLLVRTVDGVDVGT 119

Query: 121 VAEVLHTGAGELLAVKCDSG-EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VAEVLHT AGELL+VK   G E+LVPFV AIV  VSL D ++EIDPP+GLLDL
Sbjct: 120 VAEVLHTAAGELLSVKTPEGAEILVPFVTAIVPRVSLADGLVEIDPPEGLLDL 172


>sp|A1UEF4|RIMM_MYCSK Tax_Id=189918 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium sp.]
          Length = 173

 Score =  233 bits (593), Expect = 8e-60
 Identities = 119/173 (68%), Positives = 138/173 (79%), Gaps = 2/173 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           M+LVIGRV KAHG+TGE+VVE+RTD+PD RF PGA LR +  R GG  R +V+E VR HG
Sbjct: 1   MDLVIGRVAKAHGVTGELVVEVRTDDPDARFVPGARLRGRAPR-GGAERAFVVESVRPHG 59

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLL+RL GV DR  AD LRG++F++DSADLPPI+EPD YYDHQLEGL VRT  G DVG 
Sbjct: 60  GRLLLRLDGVADRTAADALRGTVFLVDSADLPPIEEPDEYYDHQLEGLLVRTVDGVDVGT 119

Query: 121 VAEVLHTGAGELLAVKCDSG-EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VAEVLHT AGELL+VK   G E+LVPFV AIV  VSL D ++EIDPP+GLLDL
Sbjct: 120 VAEVLHTAAGELLSVKTPEGAEILVPFVTAIVPRVSLADGLVEIDPPEGLLDL 172


>sp|A3PXV8|RIMM_MYCSJ Tax_Id=164757 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium sp.]
          Length = 173

 Score =  233 bits (593), Expect = 8e-60
 Identities = 119/173 (68%), Positives = 138/173 (79%), Gaps = 2/173 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           M+LVIGRV KAHG+TGE+VVE+RTD+PD RF PGA LR +  R GG  R +V+E VR HG
Sbjct: 1   MDLVIGRVAKAHGVTGELVVEVRTDDPDARFVPGARLRGRAPR-GGAERAFVVESVRPHG 59

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLL+RL GV DR  AD LRG++F++DSADLPPI+EPD YYDHQLEGL VRT  G DVG 
Sbjct: 60  GRLLLRLDGVADRTAADALRGTVFLVDSADLPPIEEPDEYYDHQLEGLLVRTVDGVDVGT 119

Query: 121 VAEVLHTGAGELLAVKCDSG-EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VAEVLHT AGELL+VK   G E+LVPFV AIV  VSL D ++EIDPP+GLLDL
Sbjct: 120 VAEVLHTAAGELLSVKTPEGAEILVPFVTAIVPRVSLADGLVEIDPPEGLLDL 172


>sp|A1T754|RIMM_MYCVP Tax_Id=350058 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium vanbaalenii]
          Length = 172

 Score =  231 bits (588), Expect = 3e-59
 Identities = 115/173 (66%), Positives = 139/173 (80%), Gaps = 2/173 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           M+LV+GRVVKAHG+TGE+ V++RTD+P+ RF  GA LR + +R GG  R +VIE VR HG
Sbjct: 1   MDLVVGRVVKAHGVTGELAVDVRTDDPEGRFVAGAVLRGRPAR-GGAEREFVIESVRSHG 59

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            R+L+RL GV DRD AD LRG+LF++DSA+LPPI++PD +YDHQLEG+ V TT GQ VG 
Sbjct: 60  DRMLIRLQGVGDRDAADALRGTLFLVDSAELPPIEDPDEFYDHQLEGMAVSTTGGQPVGT 119

Query: 121 VAEVLHTGAGELLAVK-CDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VAEVLHT AGELLAV+  D  EVLVPFV AIV SVSL D  +EIDPP+GLLDL
Sbjct: 120 VAEVLHTAAGELLAVRDPDGAEVLVPFVSAIVVSVSLADNAIEIDPPEGLLDL 172


>sp|A4TE78|RIMM_MYCGI Tax_Id=350054 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium gilvum]
          Length = 173

 Score =  229 bits (583), Expect = 1e-58
 Identities = 117/173 (67%), Positives = 138/173 (79%), Gaps = 2/173 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           M+LV+GRV KAHG+TGE+ VE+RTD+P  RF  GA LR +  R GG  R YVIE VR HG
Sbjct: 1   MDLVVGRVAKAHGVTGELTVEVRTDDPQGRFVRGAVLRGRPPR-GGAEREYVIESVRTHG 59

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLLVR  GV DRD AD LRG++F++DSADLPPI++PD +YDHQLEGL V TT+G +VG 
Sbjct: 60  DRLLVRFDGVADRDAADALRGTVFLVDSADLPPIEDPDEFYDHQLEGLTVITTSGGEVGK 119

Query: 121 VAEVLHTGAGELLAVK-CDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VAEVLHT AGELLAV+  D  EVLVPFV AIV SVSLDD+++ IDPPDGLL+L
Sbjct: 120 VAEVLHTAAGELLAVRTADDTEVLVPFVSAIVLSVSLDDQLITIDPPDGLLEL 172


>sp|B1MDI4|RIMM_MYCA9 Tax_Id=561007 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium abscessus]
          Length = 173

 Score =  221 bits (562), Expect = 3e-56
 Identities = 106/173 (61%), Positives = 137/173 (79%), Gaps = 2/173 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           MELV+GR+ +AHG+TGE+ VE+RTD+PD RF  G+ L  +  R GG+ R + +E VREH 
Sbjct: 1   MELVVGRIARAHGVTGELSVEVRTDDPDERFAVGSVLTGRLPRGGGS-RRFTVESVREHS 59

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLL+R AGV+DRD AD LRG+LF++D+ DLPPI++PD +YDHQLEGL VRT  G  VG 
Sbjct: 60  GRLLIRFAGVSDRDAADALRGTLFMVDTTDLPPIEDPDEFYDHQLEGLAVRTLDGAAVGT 119

Query: 121 VAEVLHTGAGELLAVK-CDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           V+EVLHT  GELL+V+  +  E+LVPFV AIVTS+SL D+++EIDPP+GLLDL
Sbjct: 120 VSEVLHTPGGELLSVRGSERREILVPFVSAIVTSISLADKVIEIDPPEGLLDL 172


>sp|A0QV39|RIMM_MYCS2 Tax_Id=246196 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Mycobacterium smegmatis]
          Length = 173

 Score =  218 bits (556), Expect = 2e-55
 Identities = 113/174 (64%), Positives = 135/174 (77%), Gaps = 4/174 (2%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           M+LV+GRVVKAHGI+GEVVVEIRTD+P+ RF PGA LR +     G  R Y IE VR HG
Sbjct: 1   MDLVVGRVVKAHGISGEVVVEIRTDDPEARFAPGAVLRGRPR--SGAEREYTIESVRAHG 58

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLLVRLAGV DR+ AD LRG++F++D+A+LP ID+PD +YDH+LEG+RV T     VG 
Sbjct: 59  GRLLVRLAGVADRNGADELRGTVFLVDTAELPAIDDPDEFYDHELEGMRVVTVDDAPVGK 118

Query: 121 VAEVLHTGAGELLAVKCDSG--EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VAEVLHT  GE+LAVK D G  E+LVPFVGAIVTSVS  +  + IDPP+GLLDL
Sbjct: 119 VAEVLHTAGGEILAVKADEGGREILVPFVGAIVTSVSRQNATIVIDPPEGLLDL 172


>sp|Q0S2C6|RIMM_RHOSR Tax_Id=101510 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Rhodococcus sp.]
          Length = 183

 Score =  204 bits (520), Expect = 2e-51
 Identities = 105/174 (60%), Positives = 130/174 (74%), Gaps = 4/174 (2%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           MELV+GRV K+HGI GE+VVE+RTDEP+ RF  GA LR  + R+  T   Y +E  R+H 
Sbjct: 1   MELVVGRVAKSHGIKGEIVVEVRTDEPEDRFAVGAVLRGHKPREQ-TVSTYTVEAARDHS 59

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLL+RL GV+DR  AD LRG+LFVIDSA+L P D+PD +YDH+LEGL VR   G +VG 
Sbjct: 60  GRLLLRLEGVSDRTAADALRGTLFVIDSAELEPSDDPDEFYDHELEGLSVRLADGTEVGT 119

Query: 121 VAEVLHTGAGELLAVK---CDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLD 171
           V EVLH+ AGELL+++     SGE+LVPFV AIVTSVS+ D +  IDPP+GLLD
Sbjct: 120 VIEVLHSAAGELLSIRRAGDQSGELLVPFVAAIVTSVSVADGVALIDPPEGLLD 173


>sp|C1B2R9|RIMM_RHOOB Tax_Id=632772 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Rhodococcus opacus]
          Length = 183

 Score =  203 bits (517), Expect = 5e-51
 Identities = 105/174 (60%), Positives = 130/174 (74%), Gaps = 4/174 (2%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           MELV+GRV K+HGI GE+VVE+RTDEP+ RF  GA LR  + R+  T   Y +E  REH 
Sbjct: 1   MELVVGRVAKSHGIKGEIVVEVRTDEPEDRFAVGAVLRGHKPREQ-TVNTYRVEAAREHS 59

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLL+RL GV DR  AD LRG+LFVIDSA+L P D+PD +YDH+LEGL VR   G ++G 
Sbjct: 60  GRLLLRLEGVPDRTAADALRGTLFVIDSAELVPSDDPDEFYDHELEGLSVRLADGTELGA 119

Query: 121 VAEVLHTGAGELLAVKC---DSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLD 171
           V EVLH+ AGELL+++     SGE+LVPFV AIVTSVS+ D ++ IDPP+GLLD
Sbjct: 120 VIEVLHSAAGELLSIRRAGEQSGELLVPFVAAIVTSVSVADGVVVIDPPEGLLD 173


>sp|C0ZXR9|RIMM_RHOE4 Tax_Id=234621 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Rhodococcus erythropolis]
          Length = 190

 Score =  202 bits (515), Expect = 9e-51
 Identities = 101/174 (58%), Positives = 135/174 (77%), Gaps = 4/174 (2%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           MELV+GRV K+HGI GE+VVE+RTDEP+ RF  G+ LR ++ R+  T ++Y +E  R+H 
Sbjct: 1   MELVVGRVAKSHGIKGELVVEVRTDEPEDRFAVGSVLRGRKPRES-TLKSYTVEAARDHS 59

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLL+RL GV+DR  AD LRG+LFVIDS++L P D+PD +YDH+LEGL+V  T G +VG 
Sbjct: 60  GRLLLRLEGVSDRGDADALRGTLFVIDSSELEPSDDPDEFYDHELEGLKVVLTDGTEVGS 119

Query: 121 VAEVLHTGAGELLAVKC---DSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLD 171
           V EVLH+ AGELL+++     SGE+L+PFV AIVTSVS+ D ++ I+PP+GLLD
Sbjct: 120 VIEVLHSAAGELLSIRRTGETSGELLIPFVAAIVTSVSIADGVVMIEPPEGLLD 173


>tr|C3JLT7|C3JLT7_RHOER Tax_Id=596309 (rimM)SubName: Full=16S rRNA
           processing protein RimM;[Rhodococcus erythropolis SK121]
          Length = 190

 Score =  202 bits (515), Expect = 9e-51
 Identities = 101/174 (58%), Positives = 135/174 (77%), Gaps = 4/174 (2%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           MELV+GRV K+HGI GE+VVE+RTDEP+ RF  G+ LR ++ R+  T ++Y +E  R+H 
Sbjct: 1   MELVVGRVAKSHGIKGELVVEVRTDEPEDRFAVGSVLRGRKPRES-TLKSYTVEAARDHS 59

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLL+RL GV+DR  AD LRG+LFVIDS++L P D+PD +YDH+LEGL+V  T G +VG 
Sbjct: 60  GRLLLRLEGVSDRGDADALRGTLFVIDSSELEPSDDPDEFYDHELEGLKVVLTDGAEVGS 119

Query: 121 VAEVLHTGAGELLAVKC---DSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLD 171
           V EVLH+ AGELL+++     SGE+L+PFV AIVTSVS+ D ++ I+PP+GLLD
Sbjct: 120 VIEVLHSAAGELLSIRRAGETSGELLIPFVAAIVTSVSIADGVVVIEPPEGLLD 173


>sp|Q5YS37|RIMM_NOCFA Tax_Id=37329 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Nocardia farcinica]
          Length = 174

 Score =  200 bits (509), Expect = 4e-50
 Identities = 100/173 (57%), Positives = 128/173 (73%), Gaps = 3/173 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           MELV+GRV K+HG+ GE+VVE+RTD+PD RF  G  LR +  R     R + +E  REH 
Sbjct: 1   MELVVGRVAKSHGVRGELVVEVRTDDPDARFAEGTVLRGRLPRSTEV-REFTVESAREHS 59

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLLV LAGV+DR  AD LRG+LFV+DSA+LPP D+PD +YDH+LEGL VR TAG  +G 
Sbjct: 60  GRLLVSLAGVDDRSAADALRGTLFVVDSAELPPSDDPDEFYDHELEGLSVRDTAGAVLGT 119

Query: 121 VAEVLHTGAGELLAVKC--DSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLD 171
           V EVLH+ AGELL+++   D  E+L+PFV AIV +VS+ +  + IDPP+GLLD
Sbjct: 120 VTEVLHSAAGELLSMRAAEDGREILIPFVTAIVPTVSVAEGYVVIDPPEGLLD 172


>tr|C2ANN1|C2ANN1_TSUPA Tax_Id=521096 SubName: Full=16S rRNA
           processing protein RimM;[Tsukamurella paurometabola DSM
           20162]
          Length = 173

 Score =  198 bits (503), Expect = 2e-49
 Identities = 102/172 (59%), Positives = 124/172 (72%), Gaps = 2/172 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           MELV+GRV K+HGI GE+VV++RTD P+ RF  GA L  +R R   T + Y +   REH 
Sbjct: 1   MELVVGRVAKSHGIRGEIVVDVRTDSPELRFADGAVLTGRRPRAKDT-QTYTVAASREHS 59

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLLVRL GV DR  AD LRG+LFVIDSAD+ P D+PD +YDH+LEGL VRT  G +VGV
Sbjct: 60  GRLLVRLEGVTDRTAADELRGTLFVIDSADVQPSDDPDEFYDHELEGLAVRTADGTEVGV 119

Query: 121 VAEVLHTGAGELLAVKCDSG-EVLVPFVGAIVTSVSLDDRILEIDPPDGLLD 171
           +AEVLH   GELL+VK   G E+L+PFV AIV  V +    +EIDPP+GLLD
Sbjct: 120 IAEVLHPPGGELLSVKAPDGREILIPFVTAIVPVVDVAGGFIEIDPPEGLLD 171


>tr|D0LAM4|D0LAM4_GORB4 Tax_Id=526226 SubName: Full=16S rRNA
           processing protein RimM;[Gordonia bronchialis]
          Length = 172

 Score =  173 bits (439), Expect = 6e-42
 Identities = 92/172 (53%), Positives = 117/172 (68%), Gaps = 4/172 (2%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           M+LV+GRV K+HG+ GEVVV+IRTD+P+ RF  G  LR +  +  G  R + +   R H 
Sbjct: 1   MDLVVGRVAKSHGVRGEVVVDIRTDDPETRFAVGTVLRGRMPKGAGD-REFTVTAARHHA 59

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLL+ LA V DR  ADGLRG LF+IDS++  P D+PD +YDH+LEG+ V T  G  VGV
Sbjct: 60  GRLLLSLAEVTDRGAADGLRGVLFLIDSSEAQPSDDPDEFYDHELEGVPVSTVDGVSVGV 119

Query: 121 VAEVLHTGAGELLAVKC-DSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLD 171
           V  VLH   GELL+V+  D  EVLVPFV  IV +V+ +   + IDPPDGLLD
Sbjct: 120 VESVLHLPGGELLSVRTEDRREVLVPFVRQIVPTVTREQ--IVIDPPDGLLD 169


>tr|C7MY86|C7MY86_SACVD Tax_Id=471857 SubName: Full=16S rRNA
           processing protein RimM;[Saccharomonospora viridis]
          Length = 174

 Score =  170 bits (430), Expect = 6e-41
 Identities = 91/176 (51%), Positives = 116/176 (65%), Gaps = 6/176 (3%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           M++V+GR+VK HGI GEV V++RTD P+ RF P   L  K  RDG T R   +  VR HG
Sbjct: 1   MQVVVGRIVKPHGIRGEVAVDVRTDSPEERFAPETVLTGKM-RDGRT-RPLTVAAVRPHG 58

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLLVR   V DR  A+ +RG+  +ID  +LPPID+PD +YDH+LEGLR     G  VG 
Sbjct: 59  GRLLVRFLEVPDRTAAEEIRGATLLIDVDELPPIDDPDEFYDHELEGLRAELDDGTVVGT 118

Query: 121 VAEVLHTGAGELLAVKCDSG----EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           V EV+H+  GELLAV+ +      EVLVPFV AIV  V +D   + +DPP+GLLD+
Sbjct: 119 VREVVHSPGGELLAVEVEESGRRREVLVPFVAAIVPRVEVDRGRIVLDPPEGLLDV 174


>sp|A4FME9|RIMM_SACEN Tax_Id=405948 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Saccharopolyspora erythraea]
          Length = 180

 Score =  168 bits (425), Expect = 2e-40
 Identities = 84/172 (48%), Positives = 115/172 (66%), Gaps = 2/172 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           + L +GR+V+ HG+ GE+VVE+RTD P+ RF PG+ L  +R R      N+ +   R H 
Sbjct: 7   LTLAVGRIVRPHGVRGELVVEVRTDSPELRFAPGSVLGMRR-RGAHASENFTVAAARPHA 65

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLLVR  GV  R+ A+ LRG+L  + + +L   D+PD ++DHQLEGLRV   AG++ GV
Sbjct: 66  GRLLVRAEGVEGREAAEELRGALLTVTADELESTDDPDEFHDHQLEGLRVVFPAGEEAGV 125

Query: 121 VAEVLHTGAGELLAVKC-DSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLD 171
           VAEV+HT AGELLAV+  D  EVLVPFV  +V  + L+   + +DPP+GL D
Sbjct: 126 VAEVVHTPAGELLAVRTPDDREVLVPFVSEMVPEIDLEAGRIVVDPPEGLFD 177


>tr|C4E261|C4E261_STRRS Tax_Id=479432 SubName: Full=16S rRNA
           processing protein RimM;[Streptosporangium roseum DSM
           43021]
          Length = 171

 Score =  165 bits (418), Expect = 2e-39
 Identities = 89/171 (52%), Positives = 115/171 (67%), Gaps = 5/171 (2%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           M+LVIGR+ + HG+ G+V VE+RTD+P+RRF PG ++    + D  +    VIE  R H 
Sbjct: 1   MQLVIGRIGRPHGLRGDVSVEVRTDDPERRFAPGTAV----ATDPASAGPLVIESRRWHS 56

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
             LLVR  GVNDR+ A+ LRG+  VIDSAD+PP D+PD +YDHQL GL V T  G+ VG 
Sbjct: 57  GVLLVRFEGVNDRNRAEDLRGTTLVIDSADIPPSDDPDEFYDHQLIGLAVLTPDGERVGE 116

Query: 121 VAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLD 171
           V++VLH G  +LL V+    EV VPFV A+V  V LD  +L +D P GLLD
Sbjct: 117 VSDVLHHGQ-DLLVVRRGGAEVYVPFVKALVPVVDLDKGVLVVDGPAGLLD 166


>tr|C1YHQ2|C1YHQ2_NOCDA Tax_Id=446468 SubName: Full=16S rRNA
           processing protein RimM;[Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 170

 Score =  155 bits (391), Expect = 2e-36
 Identities = 78/172 (45%), Positives = 106/172 (61%), Gaps = 4/172 (2%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           M LV+GR+ +AHG+ G+V V++RTD+P  RF  G+ L    +  G       +   R H 
Sbjct: 1   MRLVVGRIGRAHGVRGDVAVDVRTDDPAARFADGSVLATDPAEAGPL----TVVSTRRHS 56

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLLVR  GV DRD A+GLRG+  ++DS D+PP+++PD ++DH+L GL   TT  + VG 
Sbjct: 57  GRLLVRFEGVADRDAAEGLRGTALLVDSEDIPPLEDPDEFHDHELIGLAAVTTGAEPVGT 116

Query: 121 VAEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           VA+VLH     L+    D  EV VPFV A+V  V +    + IDPP GLLDL
Sbjct: 117 VADVLHHAQDLLVVTTPDGAEVYVPFVAALVPEVDVAGGRIVIDPPPGLLDL 168


>sp|A0LV71|RIMM_ACIC1 Tax_Id=351607 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Acidothermus cellulolyticus]
          Length = 176

 Score =  153 bits (386), Expect = 8e-36
 Identities = 78/173 (45%), Positives = 110/173 (63%), Gaps = 7/173 (4%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           + + +GR+ +AHG+ GEV V++RTD+PDRRF  GA L         TG    ++  R H 
Sbjct: 10  VRVAVGRITRAHGVHGEVGVQVRTDDPDRRFAAGAVLTTD------TGVTLTVQRTRWHS 63

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLLVR AG++DR TA+ LRG +   +  +    ++P+ YYD+QL G+RV T  GQ++GV
Sbjct: 64  GRLLVRFAGIDDRTTAEDLRGRVLFAEVDERVRPEDPEEYYDYQLIGMRVETVTGQEIGV 123

Query: 121 VAEVLHTGAGELLAV-KCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           V EVLH    ++LA+ +   G+  VPFV A+V  V +D R L IDPP GLL+L
Sbjct: 124 VREVLHLPGQDVLAIERSADGDAFVPFVAALVPEVDVDQRRLRIDPPPGLLEL 176


>tr|C6WEV7|C6WEV7_ACTMD Tax_Id=446462 SubName: Full=16S rRNA
           processing protein RimM;[Actinosynnema mirum]
          Length = 172

 Score =  153 bits (386), Expect = 8e-36
 Identities = 84/172 (48%), Positives = 109/172 (63%), Gaps = 3/172 (1%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           M++V+GRV KAHGI GE+ V++RTD P+ RF  G+ L AK  RDG T R+  +   R H 
Sbjct: 1   MDVVVGRVAKAHGIRGELAVDVRTDSPEARFALGSVLAAKL-RDG-TSRDLTVAAARYHS 58

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLLVR   V  RD A+ LRG+L +  +  LPP D+PD +YDHQLEGL      G  +G 
Sbjct: 59  GRLLVRFEEVLTRDVAELLRGTLLLGSTDALPPTDDPDEFYDHQLEGLAAELADGTRIGT 118

Query: 121 VAEVLHTGAGELLA-VKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLD 171
           V E++H   GELL  V+ D  E LVPFV  IV +V +    + +DPP+GLLD
Sbjct: 119 VKEIVHGPGGELLVLVREDGSEALVPFVRQIVPTVDVAGGRVVVDPPEGLLD 170


>tr|D1AB16|D1AB16_THECU Tax_Id=471852 SubName: Full=16S rRNA
           processing protein RimM;[Thermomonospora curvata DSM
           43183]
          Length = 172

 Score =  148 bits (373), Expect = 3e-34
 Identities = 76/170 (44%), Positives = 105/170 (61%), Gaps = 4/170 (2%)

Query: 2   ELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHGA 61
           ++V+GR+ + HG+ GEV V++RTD+PD RF PGA L       G       +E  R H  
Sbjct: 5   QVVVGRIGRPHGVRGEVTVDVRTDDPDARFAPGAVLDTDPPHLGPL----TVERARWHVG 60

Query: 62  RLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGVV 121
           RLL+R  GV+DR  A+ LRG+  V+D+ DLPP+++PD ++DH+L GL   TT G  VG V
Sbjct: 61  RLLLRFTGVDDRTAAEKLRGTWLVVDTGDLPPLEDPDEFHDHELIGLTAVTTDGTPVGTV 120

Query: 122 AEVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLD 171
            ++LH     L+  +   GE LVPFV A+V  V +    + IDPP GLLD
Sbjct: 121 RDILHYAQDLLVIRRETGGEALVPFVAALVPEVDVAGGRIVIDPPPGLLD 170


>sp|Q8NNX5|RIMM_CORGL Tax_Id=1718 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Corynebacterium glutamicum]
          Length = 171

 Score =  147 bits (372), Expect = 3e-34
 Identities = 87/172 (50%), Positives = 110/172 (63%), Gaps = 7/172 (4%)

Query: 2   ELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHGA 61
           EL IG+VVK+HGI GEVVVE+ TD+PD RF  G  L  K++   G   +  I+  R H  
Sbjct: 6   ELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQA---GKEHSLTIDAARMHQG 62

Query: 62  RLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGVV 121
           RLLV+ A V DR  AD LRG+ F   +A L   D+ D +YDH+LEGLRV    G+D+G V
Sbjct: 63  RLLVKFAEVPDRTAADSLRGTRFF--AAPLEDEDDEDGFYDHELEGLRV-IHEGEDIGEV 119

Query: 122 AEVLHTGAGELLAVKCDSG-EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
             V+H  AGE+L V+  SG E L+PFV AIV  V L++    I PP+GLLDL
Sbjct: 120 TGVMHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTATITPPEGLLDL 171


>tr|C1UIJ6|C1UIJ6_9ACTO Tax_Id=526225 SubName: Full=16S rRNA
           processing protein RimM;[Geodermatophilus obscurus DSM
           43160]
          Length = 177

 Score =  147 bits (371), Expect = 4e-34
 Identities = 76/170 (44%), Positives = 107/170 (62%), Gaps = 4/170 (2%)

Query: 3   LVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHGAR 62
           +V+GR+ + HG+ GEV VE+RTD+PD RF PGA LR + +  G       I   R H   
Sbjct: 12  VVVGRIGRPHGVRGEVTVEVRTDDPDLRFAPGAVLRTEPADRGPL----TIAACRWHREV 67

Query: 63  LLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGVVA 122
           LL+ + GV  R+ A+ LR +   +  ADLP +++PD YYDHQL GL  R   G ++G V+
Sbjct: 68  LLLAIDGVKSREAAEELRNTELHVPVADLPALEDPDVYYDHQLVGLTARLPDGTELGTVS 127

Query: 123 EVLHTGAGELLAVKCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
            V H GA  L+  + + GE+LVPFV AIV +V +   ++ +DPP+GLLDL
Sbjct: 128 AVRHEGADLLVVRRVEGGELLVPFVTAIVPTVDVPGGVVVVDPPEGLLDL 177


>sp|A4QFB9|RIMM_CORGB Tax_Id=340322 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Corynebacterium glutamicum]
          Length = 171

 Score =  145 bits (366), Expect = 2e-33
 Identities = 86/172 (50%), Positives = 109/172 (63%), Gaps = 7/172 (4%)

Query: 2   ELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHGA 61
           EL IG+VVK+HGI GEVVVE+ TD+PD RF  G  L  K++   G   +  I+  R H  
Sbjct: 6   ELQIGKVVKSHGIRGEVVVELSTDDPDIRFAIGEVLNGKQA---GKEHSLTIDAARMHQG 62

Query: 62  RLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGVV 121
           RLLV+ A V DR  AD LRG+ F   +A L   D+ D +YDH+LE LRV    G+D+G V
Sbjct: 63  RLLVKFAEVPDRTAADSLRGTRFF--AAPLEDEDDEDGFYDHELESLRV-IHEGEDIGEV 119

Query: 122 AEVLHTGAGELLAVKCDSG-EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
             V+H  AGE+L V+  SG E L+PFV AIV  V L++    I PP+GLLDL
Sbjct: 120 TGVMHGPAGEILEVRLTSGKETLIPFVHAIVPEVDLEEGTATITPPEGLLDL 171


>sp|Q47S65|RIMM_THEFY Tax_Id=269800 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Thermobifida fusca]
          Length = 170

 Score =  145 bits (365), Expect = 2e-33
 Identities = 83/174 (47%), Positives = 107/174 (61%), Gaps = 6/174 (3%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           M LV+GR+ + HG+ GEV VE+RTD P+ RF  G +L    +  G       I   R H 
Sbjct: 1   MRLVVGRIGRPHGVKGEVTVEVRTDSPEERFVVGKALETDPADVGPL----TITAQRWHK 56

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLLVR   V DR  A+ LRG   V+DSA+LPP+D+PD ++DH+L GLRV T  G+ VG 
Sbjct: 57  DRLLVRFEEVPDRTAAEQLRGVFLVVDSAELPPLDDPDEFHDHELIGLRVETVDGEAVGE 116

Query: 121 VAEVLHTGAGELLAVKCDSG-EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDLG 173
           V +VLH  A ++L V  + G EVLVPFV  +V  V      + IDPP GLL+LG
Sbjct: 117 VVDVLH-HAQDMLVVSGEKGSEVLVPFVRELVPDVDTAAGRVVIDPPPGLLELG 169


>sp|Q8FP33|RIMM_COREF Tax_Id=152794 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Corynebacterium efficiens]
          Length = 169

 Score =  145 bits (365), Expect = 2e-33
 Identities = 84/175 (48%), Positives = 109/175 (62%), Gaps = 13/175 (7%)

Query: 2   ELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHGA 61
           EL IGRV+K+HGI GEVVVE+ TD+PD R+ PG  L  +++   G      I+  R H  
Sbjct: 4   ELQIGRVIKSHGIRGEVVVEVTTDDPDIRYAPGEVLHGRQT---GREHTLTIDTARAHQG 60

Query: 62  RLLVRLAGVNDRDTADGLRGSLFVIDSADLPPI---DEPDTYYDHQLEGLRVRTTAGQDV 118
           RLL++   + DR  AD LRG+ F       PP+   D+ + +YDH+LEGLR+    G D+
Sbjct: 61  RLLIKFEEIPDRTAADSLRGTRFF-----APPLEREDDEEGFYDHELEGLRI-IHDGADI 114

Query: 119 GVVAEVLHTGAGELLAVKCDSG-EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           GVV  V+H  AGE+L V+  SG EVL+PFV AIV  V L+     I PPDGLLDL
Sbjct: 115 GVVTGVMHGPAGEILEVELTSGKEVLIPFVHAIVPEVDLEAGTATITPPDGLLDL 169


>tr|C8NPR2|C8NPR2_COREF Tax_Id=196164 (rimM)SubName: Full=16S rRNA
           processing protein RimM;[Corynebacterium efficiens
           YS-314]
          Length = 169

 Score =  145 bits (365), Expect = 2e-33
 Identities = 84/175 (48%), Positives = 109/175 (62%), Gaps = 13/175 (7%)

Query: 2   ELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHGA 61
           EL IGRV+K+HGI GEVVVE+ TD+PD R+ PG  L  +++   G      I+  R H  
Sbjct: 4   ELQIGRVIKSHGIRGEVVVEVTTDDPDIRYAPGEVLHGRQT---GREHTLTIDTARAHQG 60

Query: 62  RLLVRLAGVNDRDTADGLRGSLFVIDSADLPPI---DEPDTYYDHQLEGLRVRTTAGQDV 118
           RLL++   + DR  AD LRG+ F       PP+   D+ + +YDH+LEGLR+    G D+
Sbjct: 61  RLLIKFEEIPDRTAADSLRGTRFF-----APPLEREDDEEGFYDHELEGLRI-IHDGADI 114

Query: 119 GVVAEVLHTGAGELLAVKCDSG-EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           GVV  V+H  AGE+L V+  SG EVL+PFV AIV  V L+     I PPDGLLDL
Sbjct: 115 GVVTGVMHGPAGEILEVELTSGKEVLIPFVHAIVPEVDLEAGTATITPPDGLLDL 169


>tr|C4RC83|C4RC83_9ACTO Tax_Id=219305 SubName: Full=Ribosome
           maturation factor rimM;[Micromonospora sp. ATCC 39149]
          Length = 185

 Score =  144 bits (363), Expect = 4e-33
 Identities = 80/185 (43%), Positives = 111/185 (60%), Gaps = 13/185 (7%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAK------RSRDGGTGRNY--- 51
           M L++GR+ K HGI GEV VE+RTDEP+ RF PG+ L  +       +   G G  +   
Sbjct: 1   MRLIVGRIGKPHGIRGEVTVEVRTDEPEARFAPGSVLATEPGAVPPANPASGPGVPFRVP 60

Query: 52  ---VIEGVREHGARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGL 108
               +E  R H  RLLV   G+ +RD A+ LRG+L  +DSAD+ P ++P+ ++DHQL GL
Sbjct: 61  AELTVESARWHQGRLLVVFDGILERDVAEALRGTLLGVDSADVAPPEDPEEFHDHQLVGL 120

Query: 109 RVRTTAGQDVGVVAEVLHTGAGELLAVKCDSGE-VLVPFVGAIVTSVSLDDRILEIDPPD 167
            V T AG+ +G V ++ H  A +LL ++   G   L+PFV AIV  V L    + +DPP 
Sbjct: 121 AVVTPAGEHLGEVVKIDHAPASDLLVLRRPEGRTALIPFVKAIVPEVDLAGGRIVVDPPS 180

Query: 168 GLLDL 172
           GLLDL
Sbjct: 181 GLLDL 185


>tr|C2BNS9|C2BNS9_9CORY Tax_Id=525264 (rimM)SubName: Full=16S
           rRNA-processing protein;[Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 165

 Score =  141 bits (356), Expect = 2e-32
 Identities = 81/173 (46%), Positives = 106/173 (61%), Gaps = 9/173 (5%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           MEL+IGRV+K+HG+ GEVVVE  TDEP+ RF  G  L   + +   T     I+ VR H 
Sbjct: 1   MELMIGRVIKSHGVKGEVVVEATTDEPEVRFAVGEVLHGTQGKKEHT---LTIKAVRSHK 57

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLLV    + DR  AD LRG+ F     D     + D +YDH+LEGLRV    G+++G 
Sbjct: 58  GRLLVTFEEIKDRTVADSLRGTKFFAAPLD----SDDDGFYDHELEGLRV-LLEGEEIGE 112

Query: 121 VAEVLHTGAGELLAVKCDSG-EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           V  V+H G+ +LL +K D+  E L+PFV AIV  V+L+     IDPP+GLLDL
Sbjct: 113 VTSVIHGGSQDLLEIKLDNNKEALIPFVHAIVPEVNLEAGTCTIDPPEGLLDL 165


>tr|C6RAN1|C6RAN1_9CORY Tax_Id=553206 (rimM)SubName: Full=16S rRNA
           processing protein RimM;[Corynebacterium
           tuberculostearicum SK141]
          Length = 165

 Score =  140 bits (354), Expect = 4e-32
 Identities = 82/173 (47%), Positives = 106/173 (61%), Gaps = 9/173 (5%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           MEL+IGRV+K+HG+ GEVVVE  TDEP+ RF  G  L   + +   T     I+ VR H 
Sbjct: 1   MELMIGRVIKSHGVKGEVVVEATTDEPEVRFAVGEVLHGTQGKKEHT---LTIKAVRSHK 57

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDVGV 120
            RLLV    + DR  AD LRG+ F     D     + D +YDH+LEGLRV    G+++G 
Sbjct: 58  GRLLVTFEEIKDRTVADSLRGTKFFAAPLD----SDDDGFYDHELEGLRV-LLEGEEIGE 112

Query: 121 VAEVLHTGAGELLAVKCD-SGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           V  V+H G+ +LL V+ D S E L+PFV AIV  V+L+     IDPP+GLLDL
Sbjct: 113 VTSVIHGGSQDLLEVELDNSKEALIPFVHAIVPEVNLEAGTCTIDPPEGLLDL 165


>sp|A4X4H7|RIMM_SALTO Tax_Id=369723 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Salinispora tropica]
          Length = 180

 Score =  138 bits (348), Expect = 2e-31
 Identities = 80/179 (44%), Positives = 110/179 (61%), Gaps = 9/179 (5%)

Query: 3   LVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRD----GGTGR---NYVIEG 55
           LV+GR+ K HGI GEV VE+RTDEP+ RF PG+ LR +   +     G  R      +E 
Sbjct: 2   LVVGRIGKPHGIRGEVTVEVRTDEPETRFAPGSVLRTEPGANVPAHPGAYRVPGELTVEA 61

Query: 56  VREHGAR-LLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDTYYDHQLEGLRVRTTA 114
            R H  R LLV   GV DR+ A+ LRG+L  +D AD+ P  +P+ ++DHQL GL V T+A
Sbjct: 62  ARWHQGRVLLVTFEGVLDRNVAEALRGTLVGVDRADVAPPTDPEEFHDHQLVGLAVVTSA 121

Query: 115 GQDVGVVAEVLHTGAGELLAVKCDS-GEVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           G+ +G +A + H  A +LL ++     +VL+PFV AIV  + L    + +DPP GLLDL
Sbjct: 122 GERLGEIARIDHAPAADLLVLRRPGRRDVLIPFVQAIVPEIDLAGGRVVVDPPGGLLDL 180


>tr|B5HFI8|B5HFI8_STRPR Tax_Id=457429 SubName: Full=16S rRNA
           processing protein;[Streptomyces pristinaespiralis ATCC
           25486]
          Length = 185

 Score =  137 bits (345), Expect = 4e-31
 Identities = 77/174 (44%), Positives = 106/174 (60%), Gaps = 9/174 (5%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           M+LV+GR+ +AHGI GEV VE+RTDEP+ R  PGA L    + D  T     IE  R H 
Sbjct: 1   MQLVVGRIGRAHGIKGEVTVEVRTDEPELRLGPGAVL----ATDPATAGPLTIETGRVHS 56

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFV--IDSADLPPIDEPDTYYDHQLEGLRVRTTAGQDV 118
            RLL+R  GV DR+ A+ LR +L +  +D  +LP  +EPD YYDHQL  L V    G ++
Sbjct: 57  GRLLLRFEGVKDRNAAEALRNTLLIAEVDPEELP--EEPDEYYDHQLMDLDVVLEDGTEI 114

Query: 119 GVVAEVLHTGAGELLAV-KCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLD 171
           G + E+ H  + +L  V + D  EV++PFV  IV  + L+++   I PP GL+D
Sbjct: 115 GRITEISHLPSQDLFIVERPDGSEVMIPFVQEIVAEIDLEEQRAVITPPRGLID 168


>sp|P0A4D4|RIMM_STRLI Tax_Id=1916 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Streptomyces lividans]
          Length = 188

 Score =  137 bits (344), Expect = 6e-31
 Identities = 82/173 (47%), Positives = 102/173 (58%), Gaps = 7/173 (4%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           M+LV+ R+ +AHGI GEV VE+RTDEP+ R  PGA L    +  G       IE  R H 
Sbjct: 1   MQLVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATDPASTGPL----TIESGRVHS 56

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVID-SADLPPIDEPDTYYDHQLEGLRVRTTAGQDVG 119
            RLL+R AGV+DR  A+ LR +L + D   D  P DE D YYDHQL  L V T  G +VG
Sbjct: 57  GRLLLRFAGVHDRTGAEALRNTLLIADVDPDERPEDE-DEYYDHQLIDLDVVTEDGTEVG 115

Query: 120 VVAEVLHTGAGELLAV-KCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLD 171
            + E+ H    +L  V + D  EV VPFV  IVT + LD +   IDPP GL+D
Sbjct: 116 RITEISHLPTQDLFVVERPDGSEVYVPFVSEIVTGIDLDAQRAVIDPPPGLID 168


>sp|P0A4D3|RIMM_STRCO Tax_Id=1902 (rimM)RecName: Full=Ribosome
           maturation factor rimM;[Streptomyces coelicolor]
          Length = 188

 Score =  137 bits (344), Expect = 6e-31
 Identities = 82/173 (47%), Positives = 102/173 (58%), Gaps = 7/173 (4%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           M+LV+ R+ +AHGI GEV VE+RTDEP+ R  PGA L    +  G       IE  R H 
Sbjct: 1   MQLVVARIGRAHGIKGEVTVEVRTDEPELRLGPGAVLATDPASTGPL----TIESGRVHS 56

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVID-SADLPPIDEPDTYYDHQLEGLRVRTTAGQDVG 119
            RLL+R AGV+DR  A+ LR +L + D   D  P DE D YYDHQL  L V T  G +VG
Sbjct: 57  GRLLLRFAGVHDRTGAEALRNTLLIADVDPDERPEDE-DEYYDHQLIDLDVVTEDGTEVG 115

Query: 120 VVAEVLHTGAGELLAV-KCDSGEVLVPFVGAIVTSVSLDDRILEIDPPDGLLD 171
            + E+ H    +L  V + D  EV VPFV  IVT + LD +   IDPP GL+D
Sbjct: 116 RITEISHLPTQDLFVVERPDGSEVYVPFVSEIVTGIDLDAQRAVIDPPPGLID 168


>tr|C2CNR6|C2CNR6_CORST Tax_Id=525268 (rimM)SubName: Full=16S
           rRNA-processing protein;[Corynebacterium striatum ATCC
           6940]
          Length = 174

 Score =  137 bits (344), Expect = 6e-31
 Identities = 83/175 (47%), Positives = 102/175 (58%), Gaps = 12/175 (6%)

Query: 1   MELVIGRVVKAHGITGEVVVEIRTDEPDRRFTPGASLRAKRSRDGGTGRNYVIEGVREHG 60
           MEL+IGRV+K+HGI GE+ VE  TDEP+ RF  G  L     R G       I+ VR H 
Sbjct: 9   MELMIGRVIKSHGIKGELSVEATTDEPEIRFAVGEVL---HGRQGKKEHELTIKAVRVHK 65

Query: 61  ARLLVRLAGVNDRDTADGLRGSLFVIDSADLPPIDEPDT--YYDHQLEGLRVRTTAGQDV 118
            RLL+    V DR  AD LRG+ F       PP+D+PD   +YDH+LEGLRV    G D+
Sbjct: 66  GRLLITFEEVKDRTAADSLRGTQFF-----APPLDDPDDDGFYDHELEGLRV-IHDGNDI 119

Query: 119 GVVAEVLHTGAGELLAVKCDSG-EVLVPFVGAIVTSVSLDDRILEIDPPDGLLDL 172
           G V  + H     LL V+ +SG E L+PFV  IV  V LD+    I PP+GLLDL
Sbjct: 120 GEVTGLTHGPTQSLLEVRLESGKEALIPFVEEIVPEVDLDEGTCTITPPEGLLDL 174


  Database: Amellifera_nr
    Posted date:  Feb 5, 2010  5:10 AM
  Number of letters in database: 3,846,993,858
  Number of sequences in database:  11,275,203
  
Lambda     K      H
   0.318    0.141    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11275203
Number of Hits to DB: 1,362,915,290
Number of extensions: 56808082
Number of successful extensions: 143195
Number of sequences better than 10.0: 1626
Number of HSP's gapped: 142431
Number of HSP's successfully gapped: 1631
Length of query: 174
Length of database: 3,846,993,858
Length adjustment: 128
Effective length of query: 46
Effective length of database: 2,403,767,874
Effective search space: 110573322204
Effective search space used: 110573322204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 75 (33.5 bits)