BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MMAR_1892
         (347 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,275,203 sequences; 3,846,993,858 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|B2HKS0|B2HKS0_MYCMM Tax_Id=216594 (nusA)SubName: Full=N utili...   677   0.0  
tr|A0PQC2|A0PQC2_MYCUA Tax_Id=362242 (nusA)SubName: Full=N utili...   672   0.0  
sp|P0A5M2|NUSA_MYCTU Tax_Id=1773 (nusA)RecName: Full=Transcripti...   635   e-180
sp|P0A5M3|NUSA_MYCBO Tax_Id=1765 (nusA)RecName: Full=Transcripti...   635   e-180
tr|C6DX00|C6DX00_MYCTK Tax_Id=478434 SubName: Full=N utilization...   635   e-180
tr|C1AFV5|C1AFV5_MYCBT Tax_Id=561275 (nusA)SubName: Full=Transcr...   635   e-180
tr|A5U6J3|A5U6J3_MYCTA Tax_Id=419947 (nusA)SubName: Full=Transcr...   635   e-180
tr|A1KMI4|A1KMI4_MYCBP Tax_Id=410289 (nusA)SubName: Full=Probabl...   635   e-180
tr|A5WR94|A5WR94_MYCTF Tax_Id=336982 SubName: Full=N utilization...   635   e-180
tr|A4KKB0|A4KKB0_MYCTU Tax_Id=395095 SubName: Full=N utilization...   635   e-180
tr|A2VLH4|A2VLH4_MYCTU Tax_Id=348776 SubName: Full=N utilization...   635   e-180
tr|Q73VV2|Q73VV2_MYCPA Tax_Id=1770 (nusA)SubName: Full=NusA;[Myc...   632   e-179
tr|A0QIY4|A0QIY4_MYCA1 Tax_Id=243243 (nusA)SubName: Full=Transcr...   630   e-179
sp|Q9Z5J1|NUSA_MYCLE Tax_Id=1769 (nusA)RecName: Full=Transcripti...   627   e-178
tr|B8ZRT6|B8ZRT6_MYCLB Tax_Id=561304 (nusA)SubName: Full=Probabl...   627   e-178
tr|A4TCF2|A4TCF2_MYCGI Tax_Id=350054 SubName: Full=NusA antiterm...   577   e-162
tr|Q1BA96|Q1BA96_MYCSS Tax_Id=164756 SubName: Full=NusA antiterm...   576   e-162
tr|A3PY73|A3PY73_MYCSJ Tax_Id=164757 SubName: Full=NusA antiterm...   576   e-162
tr|A1UER6|A1UER6_MYCSK Tax_Id=189918 SubName: Full=NusA antiterm...   576   e-162
tr|A0QVM4|A0QVM4_MYCS2 Tax_Id=246196 (nusA)SubName: Full=Transcr...   575   e-162
tr|A1T7H6|A1T7H6_MYCVP Tax_Id=350058 SubName: Full=NusA antiterm...   564   e-159
tr|B1MD91|B1MD91_MYCA9 Tax_Id=561007 SubName: Full=Transcription...   549   e-154
tr|C1B311|C1B311_RHOOB Tax_Id=632772 (nusA)SubName: Full=Transcr...   525   e-147
tr|Q0S221|Q0S221_RHOSR Tax_Id=101510 (nusA)SubName: Full=Transcr...   524   e-147
tr|Q5YSC4|Q5YSC4_NOCFA Tax_Id=37329 (nusA)SubName: Full=Putative...   524   e-147
tr|C0ZYA3|C0ZYA3_RHOE4 Tax_Id=234621 (nusA)SubName: Full=Transcr...   515   e-144
tr|C3JM53|C3JM53_RHOER Tax_Id=596309 (nusA)SubName: Full=Transcr...   515   e-144
tr|D0LBI6|D0LBI6_GORB4 Tax_Id=526226 SubName: Full=Transcription...   507   e-142
tr|A4FM35|A4FM35_SACEN Tax_Id=405948 (nusA)SubName: Full=Putativ...   502   e-140
tr|C7MQU9|C7MQU9_SACVD Tax_Id=471857 SubName: Full=Transcription...   489   e-136
tr|C2ANX8|C2ANX8_TSUPA Tax_Id=521096 SubName: Full=Transcription...   489   e-136
tr|C6WDK9|C6WDK9_ACTMD Tax_Id=446462 SubName: Full=NusA antiterm...   488   e-136
tr|C8XJB6|C8XJB6_NAKMY Tax_Id=479431 SubName: Full=NusA antiterm...   488   e-136
tr|C1UIN5|C1UIN5_9ACTO Tax_Id=526225 SubName: Full=Transcription...   444   e-123
tr|C4RD67|C4RD67_9ACTO Tax_Id=219305 SubName: Full=Transcription...   424   e-117
tr|A0LV29|A0LV29_ACIC1 Tax_Id=351607 SubName: Full=NusA antiterm...   424   e-116
tr|A8M744|A8M744_SALAI Tax_Id=391037 SubName: Full=NusA antiterm...   421   e-116
tr|C4DMD5|C4DMD5_9ACTO Tax_Id=446470 SubName: Full=Transcription...   419   e-115
tr|A4X4N5|A4X4N5_SALTO Tax_Id=369723 SubName: Full=Transcription...   418   e-115
tr|D1AAF7|D1AAF7_THECU Tax_Id=471852 SubName: Full=NusA antiterm...   418   e-115
tr|C1WYL5|C1WYL5_9ACTO Tax_Id=479435 SubName: Full=Transcription...   415   e-114
tr|A1SLK9|A1SLK9_NOCSJ Tax_Id=196162 SubName: Full=Transcription...   411   e-113
tr|Q47RV3|Q47RV3_THEFY Tax_Id=269800 SubName: Full=Transcription...   409   e-112
tr|A6W7Z0|A6W7Z0_KINRD Tax_Id=266940 SubName: Full=NusA antiterm...   407   e-112
tr|C8NTZ4|C8NTZ4_9CORY Tax_Id=585529 (nusA)SubName: Full=N utili...   405   e-111
tr|C7QDY5|C7QDY5_CATAD Tax_Id=479433 SubName: Full=NusA antiterm...   403   e-110
tr|Q9KYR1|Q9KYR1_STRCO Tax_Id=1902 SubName: Full=Putative transc...   402   e-110
tr|C5BWS5|C5BWS5_BEUC1 Tax_Id=471853 SubName: Full=NusA antiterm...   400   e-109
tr|Q82K51|Q82K51_STRAW Tax_Id=33903 (nusA)SubName: Full=Putative...   397   e-109
tr|Q6NGN0|Q6NGN0_CORDI Tax_Id=1717 SubName: Full=Putative N util...   397   e-109

>tr|B2HKS0|B2HKS0_MYCMM Tax_Id=216594 (nusA)SubName: Full=N
           utilization substance protein a NusA;[Mycobacterium
           marinum]
          Length = 347

 Score =  677 bits (1746), Expect = 0.0
 Identities = 347/347 (100%), Positives = 347/347 (100%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT
Sbjct: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHDH 347
           LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHDH
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHDH 347


>tr|A0PQC2|A0PQC2_MYCUA Tax_Id=362242 (nusA)SubName: Full=N
           utilization substance protein a NusA;[Mycobacterium
           ulcerans]
          Length = 347

 Score =  672 bits (1734), Expect = 0.0
 Identities = 345/347 (99%), Positives = 345/347 (99%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT
Sbjct: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDP RFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPGRFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHDH 347
           LAIGKEGQNARLAARLTGW IDIRGDSPEQSAEHPERGASRGLAHDH
Sbjct: 301 LAIGKEGQNARLAARLTGWWIDIRGDSPEQSAEHPERGASRGLAHDH 347


>sp|P0A5M2|NUSA_MYCTU Tax_Id=1773 (nusA)RecName: Full=Transcription
           elongation protein nusA;[Mycobacterium tuberculosis]
          Length = 347

 Score =  635 bits (1639), Expect = e-180
 Identities = 325/346 (93%), Positives = 336/346 (97%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV+AR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETD+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIP+AEQVPGESYEHGNRLRCYVVGV+RG+REPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346
           LAIGKEGQNARLAARLTGWRIDIRGD+P      PE G SRG+AHD
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHD 346


>sp|P0A5M3|NUSA_MYCBO Tax_Id=1765 (nusA)RecName: Full=Transcription
           elongation protein nusA;[Mycobacterium bovis]
          Length = 347

 Score =  635 bits (1639), Expect = e-180
 Identities = 325/346 (93%), Positives = 336/346 (97%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV+AR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETD+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIP+AEQVPGESYEHGNRLRCYVVGV+RG+REPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346
           LAIGKEGQNARLAARLTGWRIDIRGD+P      PE G SRG+AHD
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHD 346


>tr|C6DX00|C6DX00_MYCTK Tax_Id=478434 SubName: Full=N utilization
           substance protein A nusA;[Mycobacterium tuberculosis]
          Length = 347

 Score =  635 bits (1639), Expect = e-180
 Identities = 325/346 (93%), Positives = 336/346 (97%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV+AR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETD+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIP+AEQVPGESYEHGNRLRCYVVGV+RG+REPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346
           LAIGKEGQNARLAARLTGWRIDIRGD+P      PE G SRG+AHD
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHD 346


>tr|C1AFV5|C1AFV5_MYCBT Tax_Id=561275 (nusA)SubName:
           Full=Transcription elongation factor;[Mycobacterium
           bovis]
          Length = 347

 Score =  635 bits (1639), Expect = e-180
 Identities = 325/346 (93%), Positives = 336/346 (97%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV+AR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETD+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIP+AEQVPGESYEHGNRLRCYVVGV+RG+REPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346
           LAIGKEGQNARLAARLTGWRIDIRGD+P      PE G SRG+AHD
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHD 346


>tr|A5U6J3|A5U6J3_MYCTA Tax_Id=419947 (nusA)SubName:
           Full=Transcription elongation factor NusA;[Mycobacterium
           tuberculosis]
          Length = 347

 Score =  635 bits (1639), Expect = e-180
 Identities = 325/346 (93%), Positives = 336/346 (97%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV+AR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETD+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIP+AEQVPGESYEHGNRLRCYVVGV+RG+REPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346
           LAIGKEGQNARLAARLTGWRIDIRGD+P      PE G SRG+AHD
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHD 346


>tr|A1KMI4|A1KMI4_MYCBP Tax_Id=410289 (nusA)SubName: Full=Probable N
           utilization substance protein A nusA;[Mycobacterium
           bovis]
          Length = 347

 Score =  635 bits (1639), Expect = e-180
 Identities = 325/346 (93%), Positives = 336/346 (97%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV+AR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETD+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIP+AEQVPGESYEHGNRLRCYVVGV+RG+REPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346
           LAIGKEGQNARLAARLTGWRIDIRGD+P      PE G SRG+AHD
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHD 346


>tr|A5WR94|A5WR94_MYCTF Tax_Id=336982 SubName: Full=N utilization
           substance protein A nusA;[Mycobacterium tuberculosis]
          Length = 347

 Score =  635 bits (1639), Expect = e-180
 Identities = 325/346 (93%), Positives = 336/346 (97%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV+AR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETD+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIP+AEQVPGESYEHGNRLRCYVVGV+RG+REPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346
           LAIGKEGQNARLAARLTGWRIDIRGD+P      PE G SRG+AHD
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHD 346


>tr|A4KKB0|A4KKB0_MYCTU Tax_Id=395095 SubName: Full=N utilization
           substance protein A nusA;[Mycobacterium tuberculosis
           str. Haarlem]
          Length = 347

 Score =  635 bits (1639), Expect = e-180
 Identities = 325/346 (93%), Positives = 336/346 (97%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV+AR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETD+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIP+AEQVPGESYEHGNRLRCYVVGV+RG+REPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346
           LAIGKEGQNARLAARLTGWRIDIRGD+P      PE G SRG+AHD
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHD 346


>tr|A2VLH4|A2VLH4_MYCTU Tax_Id=348776 SubName: Full=N utilization
           substance protein A nusA;[Mycobacterium tuberculosis C]
          Length = 347

 Score =  635 bits (1639), Expect = e-180
 Identities = 325/346 (93%), Positives = 336/346 (97%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRV+AR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVIAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETD+ GN+ISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEAGNLISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RDSRANARGLVVVR+G+ETKASEGVIP+AEQVPGESYEHGNRLRCYVVGV+RG+REPLIT
Sbjct: 121 RDSRANARGLVVVRIGTETKASEGVIPAAEQVPGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNV GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346
           LAIGKEGQNARLAARLTGWRIDIRGD+P      PE G SRG+AHD
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDAPPPPPGQPEPGVSRGMAHD 346


>tr|Q73VV2|Q73VV2_MYCPA Tax_Id=1770 (nusA)SubName:
           Full=NusA;[Mycobacterium paratuberculosis]
          Length = 351

 Score =  632 bits (1630), Expect = e-179
 Identities = 321/350 (91%), Positives = 338/350 (96%), Gaps = 4/350 (1%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHT+GHQ DARIEIDRKTGVV+V+AR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVKVIAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETD+DGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RDSRANARGLVVVRMG+ETKASEGVIP+AEQVPGESYEHGNR+RCYV+GV+RG+REPLIT
Sbjct: 121 RDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNRVRCYVIGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV+SN+PGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVKSNLPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVS+IDQ ARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSIIDQAARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEH----PERGASRGLAHD 346
           LAIGKEGQNARLAARLTGWRIDIRGDSP  +  H    PE GA+ G+AHD
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPGGAGGHSESRPEHGATHGMAHD 350


>tr|A0QIY4|A0QIY4_MYCA1 Tax_Id=243243 (nusA)SubName:
           Full=Transcription termination factor
           NusA;[Mycobacterium avium]
          Length = 351

 Score =  630 bits (1626), Expect = e-179
 Identities = 320/350 (91%), Positives = 337/350 (96%), Gaps = 4/350 (1%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHT+GHQ DARIEIDRKTGVV+V+AR
Sbjct: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTEGHQNDARIEIDRKTGVVKVIAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETD+DGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  ETDEDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RDSRANARGLVVVRMG+ETKASEGVIP+AEQVPGESYEHGNR+RCYV+GV+RG+REPLIT
Sbjct: 121 RDSRANARGLVVVRMGTETKASEGVIPAAEQVPGESYEHGNRVRCYVIGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV+SN+PGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVKSNLPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD+DPARFVANALSPAKVVSVS+IDQ ARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDDDPARFVANALSPAKVVSVSIIDQAARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEH----PERGASRGLAHD 346
           LAIGKEGQNARLAARLTGWRIDIRGDSP  +  H    PE GA+ G+ HD
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPGGAGGHSESRPEHGATHGMVHD 350


>sp|Q9Z5J1|NUSA_MYCLE Tax_Id=1769 (nusA)RecName: Full=Transcription
           elongation protein nusA;[Mycobacterium leprae]
          Length = 347

 Score =  627 bits (1616), Expect = e-178
 Identities = 321/346 (92%), Positives = 334/346 (96%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIE+DRGISVNELL+TI+SALLTAYRHTQGHQ DARI+IDRKTGVV+V+AR
Sbjct: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E DDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RDSRANARGLVVVRMGSETKASEGVIP+AEQV GESYEHGNRLRCYVVGV+RG+REPLIT
Sbjct: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAV S VPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346
           LAIGKEGQNARLAARLTGWRIDIRGDSP  SA   E+ AS G+AH+
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHE 346


>tr|B8ZRT6|B8ZRT6_MYCLB Tax_Id=561304 (nusA)SubName: Full=Probable
           transcription termination/antitermination
           factor;[Mycobacterium leprae]
          Length = 347

 Score =  627 bits (1616), Expect = e-178
 Identities = 321/346 (92%), Positives = 334/346 (96%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIE+DRGISVNELL+TI+SALLTAYRHTQGHQ DARI+IDRKTGVV+V+AR
Sbjct: 1   MNIDMAALHAIEMDRGISVNELLDTIRSALLTAYRHTQGHQIDARIDIDRKTGVVKVIAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E DDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ
Sbjct: 61  EVDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RDSRANARGLVVVRMGSETKASEGVIP+AEQV GESYEHGNRLRCYVVGV+RG+REPLIT
Sbjct: 121 RDSRANARGLVVVRMGSETKASEGVIPAAEQVLGESYEHGNRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIV+VAREAGHRSKIAV S VPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVSVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346
           LAIGKEGQNARLAARLTGWRIDIRGDSP  SA   E+ AS G+AH+
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPPCSAGQSEQNASHGMAHE 346


>tr|A4TCF2|A4TCF2_MYCGI Tax_Id=350054 SubName: Full=NusA
           antitermination factor;[Mycobacterium gilvum]
          Length = 353

 Score =  577 bits (1486), Expect = e-162
 Identities = 294/353 (83%), Positives = 321/353 (90%), Gaps = 11/353 (3%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIE D+GI+V+ ++ETIKSALLTAYRHT+GH+ DA I+IDRKTGVV+VMAR
Sbjct: 1   MNIDMAALHAIEADKGITVDVVVETIKSALLTAYRHTEGHEADAHIDIDRKTGVVKVMAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           +TD+DGNV+ EWDDTPEGFGRIAATTARQV+LQR RDAENE+ YGEFS REG+IVAGVIQ
Sbjct: 61  QTDEDGNVLHEWDDTPEGFGRIAATTARQVILQRLRDAENEKNYGEFSAREGDIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RD+RANARGLVVVRMGSETK SEGVIP+AEQVPGE YEHG+RLRCYVVGV+RG+REP+IT
Sbjct: 121 RDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDRLRCYVVGVARGAREPVIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV S  PGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVTSRAPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSV+VID+ ARAARV+VPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVTVIDEAARAARVIVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIR--------GDSP---EQSAEHPERGASRG 342
           LAIGKEGQNARLAARLTGWRIDIR        GD P   ++SA  P+ G   G
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDDADKNGGDGPGGHDRSASRPDAGRGVG 353


>tr|Q1BA96|Q1BA96_MYCSS Tax_Id=164756 SubName: Full=NusA
           antitermination factor;[Mycobacterium sp.]
          Length = 347

 Score =  576 bits (1485), Expect = e-162
 Identities = 291/346 (84%), Positives = 315/346 (91%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIE D+GISV+ +++TIKSALLTAYRHT+GHQ DARI+IDRK+G V+VMAR
Sbjct: 1   MNIDMAALHAIEADKGISVDVVVDTIKSALLTAYRHTEGHQADARIDIDRKSGAVKVMAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETD DGN+I EWDDTPEGFGRIAATTARQV+LQR RDAENE+ YGEFS REG+IVAGVIQ
Sbjct: 61  ETDADGNLIQEWDDTPEGFGRIAATTARQVILQRLRDAENEKNYGEFSAREGDIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RD+RANARGLVVVRMGSETK +EGVIP+AEQVPGE YEHG+RLRCYVVGV+RG+REPLIT
Sbjct: 121 RDARANARGLVVVRMGSETKGNEGVIPAAEQVPGERYEHGDRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEI DGSV+IVAVAREAGHRSKIAV S VPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEINDGSVDIVAVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVID+  RAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDEQTRAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346
           LAIGKEGQNARLAARLTGWRIDIR D+       P+  A +    D
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDAAPPDQHRPDSDAPQSAVRD 346


>tr|A3PY73|A3PY73_MYCSJ Tax_Id=164757 SubName: Full=NusA
           antitermination factor;[Mycobacterium sp.]
          Length = 347

 Score =  576 bits (1485), Expect = e-162
 Identities = 291/346 (84%), Positives = 315/346 (91%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIE D+GISV+ +++TIKSALLTAYRHT+GHQ DARI+IDRK+G V+VMAR
Sbjct: 1   MNIDMAALHAIEADKGISVDVVVDTIKSALLTAYRHTEGHQADARIDIDRKSGAVKVMAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETD DGN+I EWDDTPEGFGRIAATTARQV+LQR RDAENE+ YGEFS REG+IVAGVIQ
Sbjct: 61  ETDADGNLIQEWDDTPEGFGRIAATTARQVILQRLRDAENEKNYGEFSAREGDIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RD+RANARGLVVVRMGSETK +EGVIP+AEQVPGE YEHG+RLRCYVVGV+RG+REPLIT
Sbjct: 121 RDARANARGLVVVRMGSETKGNEGVIPAAEQVPGERYEHGDRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEI DGSV+IVAVAREAGHRSKIAV S VPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEINDGSVDIVAVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVID+  RAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDEQTRAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346
           LAIGKEGQNARLAARLTGWRIDIR D+       P+  A +    D
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDAAPPDQHRPDSDAPQSAVRD 346


>tr|A1UER6|A1UER6_MYCSK Tax_Id=189918 SubName: Full=NusA
           antitermination factor;[Mycobacterium sp.]
          Length = 347

 Score =  576 bits (1485), Expect = e-162
 Identities = 291/346 (84%), Positives = 315/346 (91%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIE D+GISV+ +++TIKSALLTAYRHT+GHQ DARI+IDRK+G V+VMAR
Sbjct: 1   MNIDMAALHAIEADKGISVDVVVDTIKSALLTAYRHTEGHQADARIDIDRKSGAVKVMAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETD DGN+I EWDDTPEGFGRIAATTARQV+LQR RDAENE+ YGEFS REG+IVAGVIQ
Sbjct: 61  ETDADGNLIQEWDDTPEGFGRIAATTARQVILQRLRDAENEKNYGEFSAREGDIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RD+RANARGLVVVRMGSETK +EGVIP+AEQVPGE YEHG+RLRCYVVGV+RG+REPLIT
Sbjct: 121 RDARANARGLVVVRMGSETKGNEGVIPAAEQVPGERYEHGDRLRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEI DGSV+IVAVAREAGHRSKIAV S VPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEINDGSVDIVAVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVID+  RAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDEQTRAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346
           LAIGKEGQNARLAARLTGWRIDIR D+       P+  A +    D
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDAAPPDQHRPDSDAPQSAVRD 346


>tr|A0QVM4|A0QVM4_MYCS2 Tax_Id=246196 (nusA)SubName:
           Full=Transcription termination factor
           NusA;[Mycobacterium smegmatis]
          Length = 343

 Score =  575 bits (1483), Expect = e-162
 Identities = 293/346 (84%), Positives = 318/346 (91%), Gaps = 4/346 (1%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAALHAIE D+GISV+ ++ETIKSALLTAYRHT GH+ DARI+IDRKTGVV+V+AR
Sbjct: 1   MNIDMAALHAIEADKGISVDVVVETIKSALLTAYRHTDGHEPDARIDIDRKTGVVKVIAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           +TD DGNV++EWDDTPEGFGRIAATTARQV+LQR RDAENE+ YGEF+  EG+IVAGVIQ
Sbjct: 61  QTDADGNVLAEWDDTPEGFGRIAATTARQVILQRLRDAENEKVYGEFAAHEGDIVAGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RD+RANARGLVVVRMGSETK SEGVIP+AEQVPGE YEHG+R+RCYVVGV+RG+REPLIT
Sbjct: 121 RDARANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDRVRCYVVGVTRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV S VPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVASRVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVID+  RAARV+VPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDEAGRAARVIVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346
           LAIGKEGQNARLAARLTGWRIDIR D    +A   +  A  G AHD
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSD----AAPVGDADARHGAAHD 342


>tr|A1T7H6|A1T7H6_MYCVP Tax_Id=350058 SubName: Full=NusA
           antitermination factor;[Mycobacterium vanbaalenii]
          Length = 333

 Score =  564 bits (1454), Expect = e-159
 Identities = 283/333 (84%), Positives = 309/333 (92%)

Query: 5   MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMARETDD 64
           MAALHAIE D+GISV+ +++TIKSALLTAYRHT+GH+ DA I+IDRKTG V+V+AR+TD+
Sbjct: 1   MAALHAIEADKGISVDVVVDTIKSALLTAYRHTEGHEADAHIDIDRKTGAVKVIARQTDE 60

Query: 65  DGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQRDSR 124
           DGNV+ EWDDTPEGFGRIAATTARQV+LQR RDAENE+ YGEFS REG+IVAGVIQRD+R
Sbjct: 61  DGNVLHEWDDTPEGFGRIAATTARQVILQRLRDAENEKNYGEFSAREGDIVAGVIQRDAR 120

Query: 125 ANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLITLSRT 184
           ANARGLVVVRMGSETK SEGVIP+AEQVPGE YEHG+RLRCYVVGV+RG+REPLITLSRT
Sbjct: 121 ANARGLVVVRMGSETKGSEGVIPAAEQVPGERYEHGDRLRCYVVGVTRGAREPLITLSRT 180

Query: 185 HPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMGQRVR 244
           HPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAV +  PGLNAKGACIGPMGQRVR
Sbjct: 181 HPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVATRAPGLNAKGACIGPMGQRVR 240

Query: 245 NVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIG 304
           NVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSV+VID+ ARAARV+VPDFQLSLAIG
Sbjct: 241 NVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVTVIDEAARAARVIVPDFQLSLAIG 300

Query: 305 KEGQNARLAARLTGWRIDIRGDSPEQSAEHPER 337
           KEGQNARLAARLTGWRIDIR D   +     ER
Sbjct: 301 KEGQNARLAARLTGWRIDIRSDDAAKEGAVEER 333


>tr|B1MD91|B1MD91_MYCA9 Tax_Id=561007 SubName: Full=Transcription
           elongation protein NusA;[Mycobacterium abscessus]
          Length = 331

 Score =  549 bits (1414), Expect = e-154
 Identities = 279/331 (84%), Positives = 302/331 (91%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNID AA++ +  D+GI+V+E ++ IKSALLTAYRHT GH+ +ARIEIDRKTGVVRVMAR
Sbjct: 1   MNIDPAAVNLMAADKGITVDEAIDIIKSALLTAYRHTDGHEPNARIEIDRKTGVVRVMAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETD DGN+I+EWD TPEGFGRIAATTARQV  Q  RDAENE  +GEFSTREGEIV GVIQ
Sbjct: 61  ETDQDGNLITEWDATPEGFGRIAATTARQVFQQGVRDAENEHKFGEFSTREGEIVGGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RD+RANARGLVVVRMGSETK SEGVIPSAEQVPGE Y HG+RLRCYVVGVSRG+REPLIT
Sbjct: 121 RDARANARGLVVVRMGSETKGSEGVIPSAEQVPGEEYHHGDRLRCYVVGVSRGAREPLIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEI+DGSVEIVAVAREAGHRSKIAV S V GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEISDGSVEIVAVAREAGHRSKIAVASKVSGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSELSGEKIDIIDYD DPARFVANALSPAKVVSVSVID+  +AARV+VPDFQLS
Sbjct: 241 QRVRNVMSELSGEKIDIIDYDPDPARFVANALSPAKVVSVSVIDEAGKAARVIVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQS 331
           LAIGKEGQNARLAARLTGWRIDIR D+  ++
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDADPEN 331


>tr|C1B311|C1B311_RHOOB Tax_Id=632772 (nusA)SubName:
           Full=Transcription elongation protein NusA;[Rhodococcus
           opacus]
          Length = 343

 Score =  525 bits (1352), Expect = e-147
 Identities = 260/328 (79%), Positives = 298/328 (90%), Gaps = 1/328 (0%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNID+AAL AIE D+GIS+  ++ TI++ALLTAYRHT+GHQ  ARI++D K+G+VRVMA 
Sbjct: 1   MNIDIAALRAIEADKGISIETVISTIQTALLTAYRHTEGHQQHARIDVDTKSGIVRVMAH 60

Query: 61  ETDDDGNVISE-WDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVI 119
           + D DGN++ E WDDTPEGFGRIAATTARQV+LQR RDAE+ER++GE+ST EGEIV GVI
Sbjct: 61  DVDSDGNMVGEEWDDTPEGFGRIAATTARQVILQRLRDAEHERSFGEYSTHEGEIVGGVI 120

Query: 120 QRDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLI 179
           QRD+RAN+RG+VVVR+GSE   +EG+IP AEQVPGE+YEHG RL+CYVVGV+RG R P I
Sbjct: 121 QRDTRANSRGMVVVRIGSEASGAEGLIPPAEQVPGENYEHGERLKCYVVGVARGQRGPQI 180

Query: 180 TLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPM 239
           TLSRTHPNLVRKLF+LEVPEIADGSVEI+AVAREAGHRSKIAV+S V GLNAKGACIGPM
Sbjct: 181 TLSRTHPNLVRKLFALEVPEIADGSVEIIAVAREAGHRSKIAVQSRVQGLNAKGACIGPM 240

Query: 240 GQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQL 299
           GQRVRNVMSEL+GEKIDIID+DEDPARFV NALSP+KVVSV+V+D  ARAARVVVPDFQL
Sbjct: 241 GQRVRNVMSELAGEKIDIIDFDEDPARFVGNALSPSKVVSVTVVDPEARAARVVVPDFQL 300

Query: 300 SLAIGKEGQNARLAARLTGWRIDIRGDS 327
           SLAIGKEGQNARLAARLTGWRIDIR D+
Sbjct: 301 SLAIGKEGQNARLAARLTGWRIDIRSDA 328


>tr|Q0S221|Q0S221_RHOSR Tax_Id=101510 (nusA)SubName:
           Full=Transcription elongation protein NusA;[Rhodococcus
           sp.]
          Length = 343

 Score =  524 bits (1350), Expect = e-147
 Identities = 260/328 (79%), Positives = 298/328 (90%), Gaps = 1/328 (0%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNID+AAL AIE D+GIS+  ++ TI++ALLTAYRHT+GHQ  ARI++D K+G+VRVMA 
Sbjct: 1   MNIDIAALRAIEADKGISIETVISTIQTALLTAYRHTEGHQQHARIDVDTKSGIVRVMAH 60

Query: 61  ETDDDGNVISE-WDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVI 119
           + D DGN++ E WDDTPEGFGRIAATTARQV+LQR RDAE+ER++GE+ST EGEIV GVI
Sbjct: 61  DVDADGNMVGEEWDDTPEGFGRIAATTARQVILQRLRDAEHERSFGEYSTHEGEIVGGVI 120

Query: 120 QRDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLI 179
           QRD+RAN+RG+VVVR+GSE   +EG+IP AEQVPGE+YEHG RL+CYVVGV+RG R P I
Sbjct: 121 QRDTRANSRGMVVVRIGSEASGAEGLIPPAEQVPGENYEHGERLKCYVVGVARGQRGPQI 180

Query: 180 TLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPM 239
           TLSRTHPNLVRKLF+LEVPEIADGSVEI+AVAREAGHRSKIAV+S V GLNAKGACIGPM
Sbjct: 181 TLSRTHPNLVRKLFALEVPEIADGSVEIIAVAREAGHRSKIAVQSRVQGLNAKGACIGPM 240

Query: 240 GQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQL 299
           GQRVRNVMSEL+GEKIDIID+DEDPARFV NALSP+KVVSV+V+D  ARAARVVVPDFQL
Sbjct: 241 GQRVRNVMSELAGEKIDIIDFDEDPARFVGNALSPSKVVSVTVVDPDARAARVVVPDFQL 300

Query: 300 SLAIGKEGQNARLAARLTGWRIDIRGDS 327
           SLAIGKEGQNARLAARLTGWRIDIR D+
Sbjct: 301 SLAIGKEGQNARLAARLTGWRIDIRSDA 328


>tr|Q5YSC4|Q5YSC4_NOCFA Tax_Id=37329 (nusA)SubName: Full=Putative
           transcriptional termination/antitermination
           factor;[Nocardia farcinica]
          Length = 342

 Score =  524 bits (1349), Expect = e-147
 Identities = 259/327 (79%), Positives = 297/327 (90%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNI++ AL AI  D+GIS+  ++  I+SALLTAYRHT+GHQ +AR++I+++TG VRVMAR
Sbjct: 1   MNIEIEALRAIVADKGISIETVISAIESALLTAYRHTEGHQPNARVDINQRTGAVRVMAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D DGNVISEWDDTPEGFGRIAATTARQV+LQR RDAENE+++GEFST EG+IV GV+Q
Sbjct: 61  ELDADGNVISEWDDTPEGFGRIAATTARQVVLQRLRDAENEKSFGEFSTHEGDIVGGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RD+RANARG VVVR+GSE   +EG+IP AEQVPGE+YEHG+R++CYVVGVSRG R P IT
Sbjct: 121 RDARANARGTVVVRIGSELHGTEGLIPPAEQVPGETYEHGDRIKCYVVGVSRGPRGPQIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVR+LF+LEVPEIADGSVEIVAVAREAGHRSKIAVRS VPG+NAKGACIGPMG
Sbjct: 181 LSRTHPNLVRRLFALEVPEIADGSVEIVAVAREAGHRSKIAVRSTVPGVNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSEL+GEKIDIIDY +DPA FV NALSP+KVVSV+++D  ARAARVVVPDFQLS
Sbjct: 241 QRVRNVMSELAGEKIDIIDYADDPATFVGNALSPSKVVSVTIVDPDARAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDS 327
           LAIGKEGQNARLAARLTGWRIDIR D+
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDA 327


>tr|C0ZYA3|C0ZYA3_RHOE4 Tax_Id=234621 (nusA)SubName:
           Full=Transcription elongation protein NusA;[Rhodococcus
           erythropolis]
          Length = 343

 Score =  515 bits (1326), Expect = e-144
 Identities = 255/328 (77%), Positives = 298/328 (90%), Gaps = 1/328 (0%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNID+AAL AIE ++G+S+  ++ TI++ALLTAYRHT+GH+ +ARI+++ KTG VRVMA 
Sbjct: 1   MNIDIAALRAIEAEKGVSIETVIATIQTALLTAYRHTEGHKQNARIDVNIKTGSVRVMAH 60

Query: 61  ETDDDGNVISE-WDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVI 119
           +TD DGN+I E WDDTPEGFGRIAATTARQV+LQR RDAE+ER++GEFST EGEIV GVI
Sbjct: 61  DTDADGNMIGEEWDDTPEGFGRIAATTARQVILQRLRDAEHERSFGEFSTHEGEIVGGVI 120

Query: 120 QRDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLI 179
           QRD+RAN+RG+VVVR+GSE+  +EG++P AEQVPGE+YEHG R++CYVVGV+RG+R P I
Sbjct: 121 QRDTRANSRGMVVVRIGSESNGAEGLLPPAEQVPGENYEHGERIKCYVVGVARGARGPQI 180

Query: 180 TLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPM 239
           TLSRTHPNLVRKLF+LEVPEIADGSVEI+ VAREAGHRSKIAV S V GLNAKGACIGPM
Sbjct: 181 TLSRTHPNLVRKLFALEVPEIADGSVEIINVAREAGHRSKIAVASRVQGLNAKGACIGPM 240

Query: 240 GQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQL 299
           GQRVRNVMSEL+GEKIDIID+DEDPA FV NALSP+KVVSV+V+D  ARAARV+VPDFQL
Sbjct: 241 GQRVRNVMSELAGEKIDIIDFDEDPATFVGNALSPSKVVSVTVVDPEARAARVIVPDFQL 300

Query: 300 SLAIGKEGQNARLAARLTGWRIDIRGDS 327
           SLAIGKEGQNARLAARLTGWRIDIR D+
Sbjct: 301 SLAIGKEGQNARLAARLTGWRIDIRSDA 328


>tr|C3JM53|C3JM53_RHOER Tax_Id=596309 (nusA)SubName:
           Full=Transcription termination factor NusA;[Rhodococcus
           erythropolis SK121]
          Length = 343

 Score =  515 bits (1326), Expect = e-144
 Identities = 255/328 (77%), Positives = 298/328 (90%), Gaps = 1/328 (0%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNID+AAL AIE ++G+S+  ++ TI++ALLTAYRHT+GH+ +ARI+++ KTG VRVMA 
Sbjct: 1   MNIDIAALRAIEAEKGVSIETVIATIQTALLTAYRHTEGHKQNARIDVNIKTGSVRVMAH 60

Query: 61  ETDDDGNVISE-WDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVI 119
           +TD DGN+I E WDDTPEGFGRIAATTARQV+LQR RDAE+ER++GEFST EGEIV GVI
Sbjct: 61  DTDADGNMIGEEWDDTPEGFGRIAATTARQVILQRLRDAEHERSFGEFSTHEGEIVGGVI 120

Query: 120 QRDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLI 179
           QRD+RAN+RG+VVVR+GSE+  +EG++P AEQVPGE+YEHG R++CYVVGV+RG+R P I
Sbjct: 121 QRDTRANSRGMVVVRIGSESNGAEGLLPPAEQVPGENYEHGERIKCYVVGVARGARGPQI 180

Query: 180 TLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPM 239
           TLSRTHPNLVRKLF+LEVPEIADGSVEI+ VAREAGHRSKIAV S V GLNAKGACIGPM
Sbjct: 181 TLSRTHPNLVRKLFALEVPEIADGSVEIINVAREAGHRSKIAVASRVQGLNAKGACIGPM 240

Query: 240 GQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQL 299
           GQRVRNVMSEL+GEKIDIID+DEDPA FV NALSP+KVVSV+V+D  ARAARV+VPDFQL
Sbjct: 241 GQRVRNVMSELAGEKIDIIDFDEDPATFVGNALSPSKVVSVTVVDPEARAARVIVPDFQL 300

Query: 300 SLAIGKEGQNARLAARLTGWRIDIRGDS 327
           SLAIGKEGQNARLAARLTGWRIDIR D+
Sbjct: 301 SLAIGKEGQNARLAARLTGWRIDIRSDA 328


>tr|D0LBI6|D0LBI6_GORB4 Tax_Id=526226 SubName: Full=Transcription
           termination factor NusA;[Gordonia bronchialis]
          Length = 340

 Score =  507 bits (1305), Expect = e-142
 Identities = 250/327 (76%), Positives = 292/327 (89%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNID+ AL  IE D+GIS++ ++  I++ALLTAYRHT+G    ARI+++RKTG VRVMA+
Sbjct: 1   MNIDINALRMIEADKGISIDTVITAIETALLTAYRHTEGFAPHARIDVNRKTGAVRVMAQ 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E DD+G+V+ EWDDTPEGFGRIAATTARQV+LQR RDAENE+ +G+  T EGEIV GV+Q
Sbjct: 61  ELDDNGDVVHEWDDTPEGFGRIAATTARQVILQRLRDAENEKNFGDLVTHEGEIVGGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           +D+RANARG++VV++GS+  ++EG+IP AEQVPGESY HG+R++CYVVGVSRG+R P IT
Sbjct: 121 QDARANARGMIVVQIGSDANSTEGIIPPAEQVPGESYTHGDRIKCYVVGVSRGARGPQIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLFSLEVPEI DGSVEIVAVAREAGHRSKIAV + V GLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFSLEVPEIEDGSVEIVAVAREAGHRSKIAVHTGVAGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSEL+GEKIDIID+D DPA FV NALSPAKVVSVSV+D TA+AARVVVPD+QLS
Sbjct: 241 QRVRNVMSELAGEKIDIIDFDTDPAVFVGNALSPAKVVSVSVVDPTAKAARVVVPDYQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDS 327
           LAIGKEGQNARLAARLTGWRIDIR D+
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDA 327


>tr|A4FM35|A4FM35_SACEN Tax_Id=405948 (nusA)SubName: Full=Putative
           transcriptional termination/antitermination
           factor;[Saccharopolyspora erythraea]
          Length = 352

 Score =  502 bits (1292), Expect = e-140
 Identities = 256/343 (74%), Positives = 293/343 (85%), Gaps = 5/343 (1%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MN+D+AAL AIE D+GI    +LE I+SALLTAYRHT+GHQ  AR+E+DRKTGVVRV+A 
Sbjct: 1   MNVDIAALRAIESDKGIPFETVLEAIESALLTAYRHTEGHQPHARVEVDRKTGVVRVIAH 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
               DG V  EWDDTPEGFGRIAATTARQV+LQR RDAE+ERT+GEFST+EGEI+ GVIQ
Sbjct: 61  TLGADGTVAEEWDDTPEGFGRIAATTARQVILQRLRDAEHERTFGEFSTKEGEILGGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RD++AN+RG+V+V++G     SEGVIP+AEQVPGE YEHG R++CYVVGVSR +R P IT
Sbjct: 121 RDAKANSRGMVIVQVGD----SEGVIPAAEQVPGERYEHGMRIKCYVVGVSRSARGPQIT 176

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVR+LF+LEVPEIADG+VEI AVAREAGHRSKIAVRS V G+NAKGACIGPMG
Sbjct: 177 LSRTHPNLVRRLFALEVPEIADGTVEIPAVAREAGHRSKIAVRSTVGGVNAKGACIGPMG 236

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
            RVRNVMSEL GEKIDIIDY +DPA FV NALSPAKVVSV V+D+ A+ ARVVVPDFQLS
Sbjct: 237 ARVRNVMSELGGEKIDIIDYSDDPATFVGNALSPAKVVSVEVVDERAKTARVVVPDFQLS 296

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGL 343
           LAIGKEGQNARLAARLTGWRIDIR D+ + S+     G + GL
Sbjct: 297 LAIGKEGQNARLAARLTGWRIDIRSDA-DPSSPATSAGQAPGL 338


>tr|C7MQU9|C7MQU9_SACVD Tax_Id=471857 SubName: Full=Transcription
           termination factor NusA;[Saccharomonospora viridis]
          Length = 348

 Score =  489 bits (1258), Expect = e-136
 Identities = 246/333 (73%), Positives = 285/333 (85%), Gaps = 4/333 (1%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MN+D+AAL AIE D+ I    +LE I+SALLTAY+HT+G Q  ARI+IDRKTG VRV+A 
Sbjct: 1   MNVDIAALRAIEADKDIPFETVLEAIESALLTAYKHTEGRQPHARIDIDRKTGYVRVIAY 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
             D++G V+ EWDDTPEGFGRIAA TARQV+LQR RDAE+E+TYGEFS +EGEIVAGV+Q
Sbjct: 61  TLDENGEVVEEWDDTPEGFGRIAAATARQVILQRLRDAEHEKTYGEFSAQEGEIVAGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RD++ANARG+V+V++G     +EGV+P AEQVPGE YEHG RL+ YVVGVSR +R P IT
Sbjct: 121 RDAKANARGMVIVQVGD----TEGVLPPAEQVPGEVYEHGARLKAYVVGVSRTARGPQIT 176

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLF+LEVPEIADG+VEI AVAREAGHRSKIAVRS VPG+NAKGACIG +G
Sbjct: 177 LSRTHPNLVRKLFALEVPEIADGTVEITAVAREAGHRSKIAVRSTVPGVNAKGACIGHVG 236

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
            RVRNVMSEL GEKIDIID+ +DPARFV NALSPAKVVSV V+D+  + ARV+VPDFQLS
Sbjct: 237 ARVRNVMSELGGEKIDIIDHSDDPARFVGNALSPAKVVSVDVVDERTKTARVIVPDFQLS 296

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAE 333
           LAIGKEGQNARLAARLTGWRIDIR D+  +  E
Sbjct: 297 LAIGKEGQNARLAARLTGWRIDIRSDAAPEPGE 329


>tr|C2ANX8|C2ANX8_TSUPA Tax_Id=521096 SubName: Full=Transcription
           termination factor NusA;[Tsukamurella paurometabola DSM
           20162]
          Length = 333

 Score =  489 bits (1258), Expect = e-136
 Identities = 240/333 (72%), Positives = 290/333 (87%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMA L AIE ++ ISV  ++E I+ ALLTAY+HT+GH+  ARI+++R+TG V+V+A+
Sbjct: 1   MNIDMATLRAIEAEKDISVETVIEAIQVALLTAYKHTEGHEPHARIDVNRRTGEVKVLAQ 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D DGN+I+EWDDTPEGFGRIAA +ARQ++ QR RDAEN+RT+GEF+  EGE+V+GV+Q
Sbjct: 61  ELDADGNIITEWDDTPEGFGRIAADSARQLITQRLRDAENDRTFGEFAVYEGEVVSGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
            D+RA ARG VVVR+GSE +  EG++P AEQVPGE+YEHG+R++ YVVGVSRG R   IT
Sbjct: 121 ADARAAARGFVVVRIGSEREGHEGLLPPAEQVPGENYEHGDRMKFYVVGVSRGQRGTQIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLV+KLF+LEVPEIADGSVEI +VAREAGHRSKIAVR++VPGLNAKGACIGPMG
Sbjct: 181 LSRTHPNLVKKLFALEVPEIADGSVEITSVAREAGHRSKIAVRTSVPGLNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMS+L GEKIDII YD+DPA FV NALSP+ VVSV+++D   +AARVVVPDF+LS
Sbjct: 241 QRVRNVMSDLDGEKIDIIAYDDDPAVFVGNALSPSSVVSVTIVDPKEKAARVVVPDFKLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAE 333
           LAIGKEGQNARLAARLTGWRIDIR D+   +AE
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDADPAAAE 333


>tr|C6WDK9|C6WDK9_ACTMD Tax_Id=446462 SubName: Full=NusA
           antitermination factor;[Actinosynnema mirum]
          Length = 337

 Score =  488 bits (1257), Expect = e-136
 Identities = 244/340 (71%), Positives = 290/340 (85%), Gaps = 4/340 (1%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MN+D+AAL AIE D+ I  + +LE I++ALLTAY+HT GH   +R+EIDRK+G VRV+A+
Sbjct: 1   MNVDIAALRAIERDKDIPFDTVLEAIETALLTAYKHTDGHHPHSRVEIDRKSGAVRVLAQ 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           +   DG V  EWDDTPEGFGRIAATTARQV+LQR RDAE+ERT+GEFS +EGEI+ GV+Q
Sbjct: 61  DLGPDGVVTEEWDDTPEGFGRIAATTARQVILQRLRDAEHERTFGEFSAKEGEIIGGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           RD+RANARG+VVV++G     +EGV+P AEQVPGE Y+HG R++CYVVGVSR +R P IT
Sbjct: 121 RDARANARGMVVVQVGD----TEGVLPPAEQVPGEEYKHGARIKCYVVGVSRSARGPQIT 176

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVR+LF+LEVPEIADG+VEI AVAREAGHRSKIAVR++VPG+NAKGACIGPMG
Sbjct: 177 LSRTHPNLVRRLFALEVPEIADGTVEIPAVAREAGHRSKIAVRTSVPGVNAKGACIGPMG 236

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
            RVRNVMSEL+GEKIDIID+ +DPA FV NALSPAKVVSV V+D+ A+ ARVVVPDFQLS
Sbjct: 237 ARVRNVMSELAGEKIDIIDHSDDPATFVGNALSPAKVVSVRVLDERAKTARVVVPDFQLS 296

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGAS 340
           LAIGKEGQNARLAARLTGWRIDIR D+     +    G++
Sbjct: 297 LAIGKEGQNARLAARLTGWRIDIRSDAEAVQKDSAASGSA 336


>tr|C8XJB6|C8XJB6_NAKMY Tax_Id=479431 SubName: Full=NusA
           antitermination factor;[Nakamurella multipartita]
          Length = 336

 Score =  488 bits (1256), Expect = e-136
 Identities = 242/334 (72%), Positives = 283/334 (84%), Gaps = 1/334 (0%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MN+D+AAL A+E ++GI  N L++T+++ALLTAYRHTQGH   AR++IDRKTG +RV A+
Sbjct: 1   MNVDIAALRAVEKEKGIDFNSLIDTLETALLTAYRHTQGHAGHARVQIDRKTGGIRVWAQ 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETDD G ++ EWDDTPE FGRIAATTARQV+LQR RD +NERT+G+F+ RE +++ G I 
Sbjct: 61  ETDDSGEIVREWDDTPEDFGRIAATTARQVILQRLRDVDNERTFGDFAGREHDLITGTIS 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
            D++ NARG+VVV +G    A EG+IP+AEQVPGESY HG RLRCYVV V+RG R P IT
Sbjct: 121 ADAKVNARGVVVVSLGEGKNAVEGIIPAAEQVPGESYPHGQRLRCYVVSVARGLRGPQIT 180

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLF+LEVPEIADGSVEI AVAREAGHRSKIAVR  V G+NAKGACIGPMG
Sbjct: 181 LSRTHPNLVRKLFALEVPEIADGSVEITAVAREAGHRSKIAVRPAVAGVNAKGACIGPMG 240

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
            RVR VMSEL+GEKIDIIDYDEDPA FV NALSPA+ +S +VID  A+AARVVVPDFQLS
Sbjct: 241 ARVRAVMSELNGEKIDIIDYDEDPATFVGNALSPARALSTTVIDPVAKAARVVVPDFQLS 300

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGD-SPEQSAE 333
           LAIGKEGQNARLAARLTGWRIDIR D +P+ + E
Sbjct: 301 LAIGKEGQNARLAARLTGWRIDIRSDAAPDPAGE 334


>tr|C1UIN5|C1UIN5_9ACTO Tax_Id=526225 SubName: Full=Transcription
           termination factor NusA;[Geodermatophilus obscurus DSM
           43160]
          Length = 381

 Score =  444 bits (1143), Expect = e-123
 Identities = 225/339 (66%), Positives = 276/339 (81%), Gaps = 5/339 (1%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNID+ AL A+E ++GI  + ++E I++AL+TAYRH  G     R+ +DRKTG V V+A+
Sbjct: 1   MNIDVTALKAVEREKGIPADTVIEAIETALVTAYRHADGASKHVRVHVDRKTGEVAVLAQ 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E   DG V+ EWDDTP  FGRIAA+TA+QV++QR RDAE+E+T+GE++ +EG+IV+G++Q
Sbjct: 61  ELGPDGEVVREWDDTPSDFGRIAASTAKQVIVQRLRDAEHEQTFGEYAGKEGDIVSGIVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
            D R NA G V+V +G      E V+P+AEQVPGESY HG+RLR YVV V+R  R P +T
Sbjct: 121 ADQRRNASGTVLVDIGKV----EAVLPAAEQVPGESYPHGSRLRAYVVSVARTYRGPQVT 176

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           +SRTHPNLVRKLF+LEVPEIADGSVEIVAVAREAGHRSKIAVR++VPGLNAKGACIGPMG
Sbjct: 177 VSRTHPNLVRKLFALEVPEIADGSVEIVAVAREAGHRSKIAVRTSVPGLNAKGACIGPMG 236

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVRNVMSEL GEKIDI+D+ +DPA FVA+ALSPA+V S  ++D  A+A RVVVPDFQLS
Sbjct: 237 QRVRNVMSELHGEKIDIVDWSDDPATFVASALSPARVNSAQLVDPKAKAVRVVVPDFQLS 296

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDS-PEQSAEHPERG 338
           LAIGKEGQNARLAARLTG RIDIR D+ P+ +A  P  G
Sbjct: 297 LAIGKEGQNARLAARLTGCRIDIRSDAQPDDAAPSPGVG 335


>tr|C4RD67|C4RD67_9ACTO Tax_Id=219305 SubName: Full=Transcription
           elongation factor nusA;[Micromonospora sp. ATCC 39149]
          Length = 347

 Score =  424 bits (1090), Expect = e-117
 Identities = 214/329 (65%), Positives = 260/329 (79%), Gaps = 4/329 (1%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNID+AAL A+E +R I  + +L  I++ALLTAYRHT+G ++ AR+EIDRK G   V A+
Sbjct: 1   MNIDLAALRALEREREIPFDTILAAIETALLTAYRHTEGAESHARVEIDRKNGAALVYAQ 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E DDDG V+ EWDDTP  FGRIAA TA+QV+LQR R+A +E  +GE+  R+G++V GV+Q
Sbjct: 61  ELDDDGTVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEVHFGEYVGRDGDLVTGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
                + +G+V V +G      EGV+P +EQVPGE Y HG R+RC VV V++G R P IT
Sbjct: 121 AHEARSEKGIVSVDLGK----LEGVLPQSEQVPGERYTHGERIRCVVVHVAKGMRGPQIT 176

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSR+HP LV+KLF+LEVPEIADG+VEI A+AREAGHR+KIAVRS VPG+NAKGACIGPMG
Sbjct: 177 LSRSHPALVKKLFALEVPEIADGTVEIGAIAREAGHRTKIAVRSAVPGVNAKGACIGPMG 236

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVR VMSEL GEKIDIID+ +DPA FV NALSPAK + V V+D   R ARV VPDFQLS
Sbjct: 237 QRVRAVMSELHGEKIDIIDWSDDPATFVGNALSPAKALRVEVVDLATRTARVTVPDFQLS 296

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPE 329
           LAIG+EGQNARLAARLTGWRIDIR D+ +
Sbjct: 297 LAIGREGQNARLAARLTGWRIDIRSDAEQ 325


>tr|A0LV29|A0LV29_ACIC1 Tax_Id=351607 SubName: Full=NusA
           antitermination factor;[Acidothermus cellulolyticus]
          Length = 348

 Score =  424 bits (1089), Expect = e-116
 Identities = 222/350 (63%), Positives = 272/350 (77%), Gaps = 17/350 (4%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNIDMAAL ++E ++ IS + L++ I++ALLTAY+ T+G    AR+ +DRKTG V V+A 
Sbjct: 1   MNIDMAALRSLEREKDISFDLLVQAIETALLTAYQRTEGAYPRARVVLDRKTGEVTVLAA 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           ETD +GNVI E+D TP+ F RIAA TA+QV+LQR RDAE+E T+GE++ REG++V G+IQ
Sbjct: 61  ETDAEGNVIREFDHTPQDFNRIAAMTAKQVILQRLRDAEHELTFGEYAGREGDVVGGIIQ 120

Query: 121 R--DSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPL 178
           +  DSR      V V +G      EGV+P  EQVPGE Y HG R+RCYV+ V +G R P 
Sbjct: 121 QQHDSRN-----VYVNLGKV----EGVLPVTEQVPGERYVHGERIRCYVLSVHKGIRGPQ 171

Query: 179 ITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGP 238
           ITLSRTHP LVRKLF+LEVPEIADGSVEIVA+AREAGHR+KIAVRS VPGLNAKGACIGP
Sbjct: 172 ITLSRTHPGLVRKLFALEVPEIADGSVEIVALAREAGHRTKIAVRSKVPGLNAKGACIGP 231

Query: 239 MGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQ 298
           +GQRVR VM+EL GEKIDIIDY +DPA FVANALSPA+V SV ++D   ++ARV+VPD+Q
Sbjct: 232 LGQRVRAVMAELHGEKIDIIDYSDDPATFVANALSPARVTSVEIVDPVTKSARVIVPDYQ 291

Query: 299 LSLAIGKEGQNARLAARLTGWRIDIRGDSP------EQSAEHPERGASRG 342
           LSLAIG+EGQNARLAARLTGWRIDIR D+       +   +HP   +  G
Sbjct: 292 LSLAIGREGQNARLAARLTGWRIDIRPDTEAALSPGDADGQHPASSSGVG 341


>tr|A8M744|A8M744_SALAI Tax_Id=391037 SubName: Full=NusA
           antitermination factor;[Salinispora arenicola]
          Length = 347

 Score =  421 bits (1082), Expect = e-116
 Identities = 214/326 (65%), Positives = 256/326 (78%), Gaps = 4/326 (1%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNID+AAL A+E +R I  + +L  I++ALLTAYRHT+G Q  AR+EIDRKTGV  V A+
Sbjct: 1   MNIDLAALRALEREREIPFDTILAAIETALLTAYRHTEGAQPHARVEIDRKTGVALVYAQ 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D DG V+ EWDDTP  FGRIAA TA+QV+LQR R+A +E  +GE+  R+G++V GV+Q
Sbjct: 61  EMDADGGVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEVHFGEYVGRDGDLVTGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
                  +G+V V +G      EGV+P +EQVPGE Y HG R+RC VV V++G R P +T
Sbjct: 121 AHEARAEKGIVSVDLGK----LEGVLPQSEQVPGEQYAHGERVRCVVVHVAKGVRGPQVT 176

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSR+HP LV+KLF+LEVPEIADG+VEI A+AREAGHR+KIAVRS   G+NAKGACIGPMG
Sbjct: 177 LSRSHPALVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRSTAAGVNAKGACIGPMG 236

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVR VMSEL GEKIDIID+ EDPA FV NALSPAK + V V+D  +R ARV VPDFQLS
Sbjct: 237 QRVRAVMSELHGEKIDIIDWSEDPATFVGNALSPAKALRVDVVDLASRTARVTVPDFQLS 296

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGD 326
           LAIG+EGQNARLAARLTGWRIDIR D
Sbjct: 297 LAIGREGQNARLAARLTGWRIDIRSD 322


>tr|C4DMD5|C4DMD5_9ACTO Tax_Id=446470 SubName: Full=Transcription
           termination factor NusA;[Stackebrandtia nassauensis DSM
           44728]
          Length = 347

 Score =  419 bits (1078), Expect = e-115
 Identities = 215/337 (63%), Positives = 264/337 (78%), Gaps = 5/337 (1%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           M+ID+ AL ++E +R I  + +++ I+SALLTAYRHT   Q+ AR+E++R+TG V V AR
Sbjct: 1   MHIDLVALRSLEHERDIPFHTIIDAIESALLTAYRHTPDAQSHARVEVNRETGTVTVRAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D +GNV+ EWDDTP+ FGRIAA TA+QV++QR R+A ++  +GEF++ EG++V GVIQ
Sbjct: 61  EVDAEGNVVREWDDTPDDFGRIAAMTAKQVIMQRLREATDDVNFGEFASLEGDVVTGVIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
               A+ +G V+V +G      E ++P  EQVPGE+Y HG RLR  VV VSRG R P IT
Sbjct: 121 AHEGASEKGTVMVDLGK----IEAMLPHVEQVPGENYSHGRRLRAAVVQVSRGPRGPQIT 176

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           +SR+HPNLV+KLF+ EVPEIADG VEI AVAREAGHR+KIAVR+ V  LNAKGACIGPMG
Sbjct: 177 VSRSHPNLVKKLFAAEVPEIADGLVEIAAVAREAGHRTKIAVRATVADLNAKGACIGPMG 236

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
            RVR VMSEL GEKIDIIDY EDPA FV NALSP+KVVSV V+D   + ARVVVPDFQLS
Sbjct: 237 SRVRAVMSELDGEKIDIIDYSEDPATFVGNALSPSKVVSVEVLDPDDKVARVVVPDFQLS 296

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGD-SPEQSAEHPE 336
           LAIG+EGQNARLAARLTGWRIDI+ D +P+ S   PE
Sbjct: 297 LAIGREGQNARLAARLTGWRIDIKSDAAPDPSKVSPE 333


>tr|A4X4N5|A4X4N5_SALTO Tax_Id=369723 SubName: Full=Transcription
           termination factor NusA;[Salinispora tropica]
          Length = 347

 Score =  418 bits (1075), Expect = e-115
 Identities = 214/337 (63%), Positives = 260/337 (77%), Gaps = 5/337 (1%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           MNID+AAL A+E +R I  + +L  I++ALLTAYRHT+G Q  AR+EIDRKTG   V A+
Sbjct: 1   MNIDLAALRALEREREIPFDTILAAIETALLTAYRHTEGAQPHARVEIDRKTGAALVFAQ 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E + DG V+ EWDDTP  FGRIAA TA+QV+LQR R+A +E  +GE+  R+G++V GV+Q
Sbjct: 61  EVEPDGGVVREWDDTPHDFGRIAAMTAKQVILQRLREATDEVHFGEYVGRDGDLVTGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
                  +G+V V +G      EGV+P +EQVPGE Y HG R+RC VV V++G R P +T
Sbjct: 121 AHEARAEKGIVSVDLGK----LEGVLPQSEQVPGEQYAHGERVRCVVVHVAKGVRGPQVT 176

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSR+HP LV+KLF+LEVPEIADG+VEI A+AREAGHR+KIAVRS   G+NAKGACIGPMG
Sbjct: 177 LSRSHPALVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRSTAAGVNAKGACIGPMG 236

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
           QRVR VM EL GEKIDIID+ EDPA FV NALSPAK + V V+D  +R ARV VPDFQLS
Sbjct: 237 QRVRAVMGELHGEKIDIIDWSEDPAAFVGNALSPAKALRVEVVDLASRTARVTVPDFQLS 296

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDS-PEQSAEHPE 336
           LAIG+EGQNARLAARLTGWRIDIR D+ P + A + E
Sbjct: 297 LAIGREGQNARLAARLTGWRIDIRSDAEPARPAGNAE 333


>tr|D1AAF7|D1AAF7_THECU Tax_Id=471852 SubName: Full=NusA
           antitermination factor;[Thermomonospora curvata DSM
           43183]
          Length = 351

 Score =  418 bits (1074), Expect = e-115
 Identities = 217/330 (65%), Positives = 263/330 (79%), Gaps = 8/330 (2%)

Query: 5   MAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMARETDD 64
           MAAL ++E ++ IS+  + + I+ ALL AY  T+G    AR+E+DRKTG V V A ETDD
Sbjct: 1   MAALRSLESEKDISLELVAQAIEDALLIAYHRTEGAAPRARVELDRKTGHVTVWAAETDD 60

Query: 65  DGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQRDSR 124
           +GNV+ E+DDTPE F RIAATTA+QV+LQ+ RDAE+E T+GE++ REG+IV+GVIQ+   
Sbjct: 61  EGNVLREYDDTPEDFSRIAATTAKQVILQKLRDAEDEVTFGEYAGREGDIVSGVIQQGKD 120

Query: 125 ANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLITLSRT 184
                 V+V +G      E ++P +EQVPGESYEHG+R+R YVV V +G R P + LSRT
Sbjct: 121 PRN---VLVDLGR----IEAILPPSEQVPGESYEHGDRIRAYVVQVRKGHRGPSVQLSRT 173

Query: 185 HPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMGQRVR 244
           HPNLVRKLF+LEVPEIADG+VEI A+AREAGHR+KIAVRS  PG+NAKGACIGPMG RVR
Sbjct: 174 HPNLVRKLFALEVPEIADGTVEIAAIAREAGHRTKIAVRSRKPGVNAKGACIGPMGSRVR 233

Query: 245 NVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIG 304
           NVM EL GEKIDI+D+ EDPA FV NALSPA+V SV VID+ AR ARV+VPD+QLSLAIG
Sbjct: 234 NVMHELRGEKIDIVDWSEDPAEFVGNALSPARVSSVQVIDEAARTARVIVPDYQLSLAIG 293

Query: 305 KEGQNARLAARLTGWRIDIRGDSP-EQSAE 333
           KEGQNARLAARLTGWRIDIR D+  EQS +
Sbjct: 294 KEGQNARLAARLTGWRIDIRPDTEVEQSGQ 323


>tr|C1WYL5|C1WYL5_9ACTO Tax_Id=479435 SubName: Full=Transcription
           termination factor NusA;[Kribbella flavida DSM 17836]
          Length = 330

 Score =  415 bits (1066), Expect = e-114
 Identities = 217/329 (65%), Positives = 260/329 (79%), Gaps = 11/329 (3%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           M+IDMA L ++E ++ I+   ++E I+ ALL AY  T+G Q  AR E+DRKTG V V AR
Sbjct: 1   MDIDMAVLRSLEREKDIAFEVVVEAIEQALLVAYHRTEGAQQHARAELDRKTGHVTVFAR 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E   DG ++ E+DDTP  FGRIAATTA+QV+LQR RDAE+E  YGEFS +EG+IV+GV+Q
Sbjct: 61  EMGPDGTLVREYDDTPADFGRIAATTAKQVILQRLRDAEDEVRYGEFSGKEGDIVSGVVQ 120

Query: 121 --RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPL 178
             RD R+     V+V +G      E V+P  EQVPGE YEHG+RLR YVVGV +G + P 
Sbjct: 121 QGRDPRS-----VMVDLGK----IEAVLPGPEQVPGEKYEHGSRLRVYVVGVRKGFKGPQ 171

Query: 179 ITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGP 238
           IT+SRTHPNLV+KLF+LEVPEIADG+VEI A+AREAGHR+KIAVR+  P +N KGACIGP
Sbjct: 172 ITVSRTHPNLVKKLFALEVPEIADGTVEITAIAREAGHRTKIAVRTLNPSVNGKGACIGP 231

Query: 239 MGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQ 298
           MGQRVRN+M EL GEKIDIID+ +DPA FV NALSPA+V SV V+D  ARAARVVVPD+Q
Sbjct: 232 MGQRVRNIMHELHGEKIDIIDHSDDPATFVGNALSPAQVSSVEVVDAAARAARVVVPDYQ 291

Query: 299 LSLAIGKEGQNARLAARLTGWRIDIRGDS 327
           LSLAIGKEGQNARLAARLTGWRIDIR D+
Sbjct: 292 LSLAIGKEGQNARLAARLTGWRIDIRPDT 320


>tr|A1SLK9|A1SLK9_NOCSJ Tax_Id=196162 SubName: Full=Transcription
           termination factor NusA;[Nocardioides sp.]
          Length = 327

 Score =  411 bits (1056), Expect = e-113
 Identities = 206/333 (61%), Positives = 262/333 (78%), Gaps = 7/333 (2%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           M+IDM+ L  +E ++ IS + L+E I+ ALLTAY  + G    AR+ +DRK+G V V+A 
Sbjct: 1   MDIDMSILRMLEREKEISFDVLVEAIEQALLTAYHKSPGAHEQARVVLDRKSGHVTVLAS 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D++GN + E+DDTP GFGRIAATTA+Q+MLQR RDAE++  +GEFS +EG+I++G+IQ
Sbjct: 61  EVDEEGNAVGEYDDTPAGFGRIAATTAKQIMLQRLRDAEDDVRFGEFSGKEGDIISGIIQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           +    +    V+V +G      E ++P  E+VPGE Y+HG R++C VV V +G R P IT
Sbjct: 121 QGRNPDD---VMVDLGK----LEALLPVGERVPGERYDHGTRIKCLVVSVRKGMRGPQIT 173

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSR+HPNLV+KLF+LEVPEIADG+VEI A+AREAGHR+K+AVRS VPG+NAKGACIGPMG
Sbjct: 174 LSRSHPNLVKKLFALEVPEIADGTVEIAAIAREAGHRTKLAVRSTVPGVNAKGACIGPMG 233

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
            RVR VMSEL GEKIDI+D+ EDPA  VA+ALSPA+V SV ++D  A++ARVVVPDFQLS
Sbjct: 234 SRVRAVMSELHGEKIDIVDWSEDPAEMVAHALSPARVTSVEIVDAAAKSARVVVPDFQLS 293

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAE 333
           LAIGKEGQNARLAARLTGWRIDIR D  E  ++
Sbjct: 294 LAIGKEGQNARLAARLTGWRIDIRSDEAEAGSD 326


>tr|Q47RV3|Q47RV3_THEFY Tax_Id=269800 SubName: Full=Transcription
           termination factor NusA;[Thermobifida fusca]
          Length = 329

 Score =  409 bits (1052), Expect = e-112
 Identities = 212/336 (63%), Positives = 263/336 (78%), Gaps = 8/336 (2%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           M+IDM+ L ++E ++ ISV+ +++ I+ ALL AYR  +G  T+AR+E+DR TG V V A 
Sbjct: 1   MDIDMSVLRSLEREKDISVDLVVKAIEDALLIAYRRQEGPDTNARVELDRATGHVTVWAE 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E D++G +I E+D TP GFGRIAA+TA+QV+LQR RDAE+E T GEF+ RE +IV+GV+Q
Sbjct: 61  ERDEEGRLIREYDATPSGFGRIAASTAKQVILQRLRDAEDEITLGEFAGRESQIVSGVVQ 120

Query: 121 RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPLIT 180
           +         V+V +G      E ++P  EQVP E+Y HG RLR YVV V RG R P IT
Sbjct: 121 QGKDPRN---VLVDLGRV----EAILPPQEQVPTETYTHGERLRAYVVQVRRGHRGPSIT 173

Query: 181 LSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGPMG 240
           LSRTHPNLVRKLF LEVPEIADG+VEI A+AREAGHR+K+AV+SN PG+NAKGACIGP+G
Sbjct: 174 LSRTHPNLVRKLFELEVPEIADGTVEIAAIAREAGHRTKMAVKSNKPGVNAKGACIGPLG 233

Query: 241 QRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLS 300
            RVRNVM+EL GEKIDI+DY +DPA+FVANALSPA+V  V V+D  AR ARV+VPD+Q S
Sbjct: 234 SRVRNVMNELRGEKIDIVDYSDDPAQFVANALSPAQVTHVEVLDAAARVARVIVPDYQQS 293

Query: 301 LAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPE 336
           LAIGKEGQNARLAARLTGWRIDIR D+ E + +H E
Sbjct: 294 LAIGKEGQNARLAARLTGWRIDIRSDT-EMAEQHGE 328


>tr|A6W7Z0|A6W7Z0_KINRD Tax_Id=266940 SubName: Full=NusA
           antitermination factor;[Kineococcus radiotolerans]
          Length = 339

 Score =  407 bits (1047), Expect = e-112
 Identities = 216/346 (62%), Positives = 268/346 (77%), Gaps = 16/346 (4%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQ----TDARIEIDRKTGVVR 56
           MNIDMAAL  +E +R I    L+ TI+ ALL AY  T+        DAR+E+DR +G VR
Sbjct: 1   MNIDMAALRMLEREREIPFETLVRTIEQALLVAYHRTEHEDHKAHPDARVELDRASGEVR 60

Query: 57  VMARETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVA 116
           V+A+E DD G V+ E+DDTP GFGRIAATTARQV+LQR RDAE++   GE++  EGEIV+
Sbjct: 61  VLAKERDDAGLVVGEFDDTPSGFGRIAATTARQVILQRLRDAEDDAVIGEYAQTEGEIVS 120

Query: 117 GVIQ--RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGS 174
           GV+Q  RD R     +V V +GS     EGV+P  EQVPGE YEHG+RLRC+VV V +G 
Sbjct: 121 GVVQQGRDPR-----MVQVDLGS----LEGVLPPQEQVPGEKYEHGSRLRCFVVSVKKGP 171

Query: 175 REPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGA 234
           + P + LSR+HP LV+KLF+LEVPEIADG+V+I A++REAGHRSK+AVR+   G+NAKGA
Sbjct: 172 KGPQVVLSRSHPQLVKKLFALEVPEIADGTVQITALSREAGHRSKMAVRATRGGVNAKGA 231

Query: 235 CIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVV 294
           CIGPMGQRVR VM+EL GEKIDI+D+ +DPA+FV NALSPA+V SV V+D  AR+ARV+V
Sbjct: 232 CIGPMGQRVRAVMAELRGEKIDIVDHSDDPAQFVGNALSPARVSSVEVVDLAARSARVIV 291

Query: 295 PDFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGAS 340
           PD+QLSLAIGKEGQNARLAA+LTGWRIDIR D+ E +A  P R ++
Sbjct: 292 PDYQLSLAIGKEGQNARLAAKLTGWRIDIRPDT-EPTAGGPGRDST 336


>tr|C8NTZ4|C8NTZ4_9CORY Tax_Id=585529 (nusA)SubName: Full=N
           utilization substance protein A;[Corynebacterium
           genitalium ATCC 33030]
          Length = 341

 Score =  405 bits (1042), Expect = e-111
 Identities = 202/335 (60%), Positives = 253/335 (75%), Gaps = 8/335 (2%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQ--------GHQTDARIEIDRKT 52
           MNID+AAL  IE + GI V++LL TI SALL AYR  +        G  T AR++ID +T
Sbjct: 1   MNIDIAALKQIESEAGIPVDDLLGTIASALLFAYREGKDEFGTGAAGEGTKARVDIDTQT 60

Query: 53  GVVRVMARETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREG 112
           G V VM  E DDDGNVISE+DDTP  F R+ A   R  +L+R R A + R Y  +S  EG
Sbjct: 61  GAVAVMVSELDDDGNVISEYDDTPVNFSRVGAQAVRDAILKRMRTAADNRAYSAYSELEG 120

Query: 113 EIVAGVIQRDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSR 172
           ++V+GV+QRD+ AN RG+VVV++G+E+   +G++  AEQ+PGE  EHG+R++CYVVGVS 
Sbjct: 121 QVVSGVVQRDASANERGIVVVQLGTESDPQDGILLPAEQIPGEKLEHGDRVKCYVVGVSG 180

Query: 173 GSREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAK 232
           G R   + LSRTHP LVR LF+LEVPE+ADGSVEIVA+AREAGHRSK+AV+    G+NAK
Sbjct: 181 GDRRTTVNLSRTHPELVRGLFALEVPEVADGSVEIVAIAREAGHRSKVAVKGVAKGINAK 240

Query: 233 GACIGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARV 292
           GACIGP G RV N+M  L GEKIDI+DY +DPA +V N+L+P+KVV V V+D  A+ ARV
Sbjct: 241 GACIGPRGARVTNIMESLGGEKIDIVDYSDDPAVYVGNSLAPSKVVRVDVVDHDAQTARV 300

Query: 293 VVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDS 327
           VVPD+QLSLAIG+EGQNARLAARLTGW+IDI  D+
Sbjct: 301 VVPDYQLSLAIGREGQNARLAARLTGWKIDIHSDA 335


>tr|C7QDY5|C7QDY5_CATAD Tax_Id=479433 SubName: Full=NusA
           antitermination factor;[Catenulispora acidiphila]
          Length = 324

 Score =  403 bits (1036), Expect = e-110
 Identities = 210/329 (63%), Positives = 259/329 (78%), Gaps = 12/329 (3%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           M+I  +AL  +E DRGI   +L+E I++ALL AY+ T G +T AR+++DR +G V V A 
Sbjct: 1   MDIPTSALRDLEKDRGIPFEKLVEDIEAALLIAYKRTDGAKTRARVQVDRSSGHVTVWAV 60

Query: 61  ETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGVIQ 120
           E  +DG+   E+DDTP  FGRIA+TTA+QV+LQR RD E+E+T+GEFS R+G+++ GV+Q
Sbjct: 61  EDIEDGST-REYDDTPSEFGRIASTTAKQVILQRLRDHEDEQTFGEFSGRKGDLITGVVQ 119

Query: 121 --RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPL 178
             RD RA     V+V +G      EG +P+AEQVPGE Y HG RL+CYVV V RG R P 
Sbjct: 120 QGRDPRA-----VLVNIGK----IEGTLPAAEQVPGEEYRHGERLKCYVVDVRRGQRGPQ 170

Query: 179 ITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGP 238
           +TLSRTHP+LVRKLF+LEVPEIA+G+VEI A+AREAGHR+KIAVRS+  G+NAKGACIGP
Sbjct: 171 VTLSRTHPDLVRKLFALEVPEIAEGAVEITAIAREAGHRTKIAVRSHRAGVNAKGACIGP 230

Query: 239 MGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQ 298
           MG RVRNVM+EL GEKIDI+D+ EDPA  V NALSPA+V  V V+D   R+ARV+VPDFQ
Sbjct: 231 MGARVRNVMAELHGEKIDIVDWSEDPAEMVGNALSPARVSKVQVVDLDQRSARVIVPDFQ 290

Query: 299 LSLAIGKEGQNARLAARLTGWRIDIRGDS 327
           LSLAIGKEGQNARLAARLTGWRIDIR D+
Sbjct: 291 LSLAIGKEGQNARLAARLTGWRIDIRSDA 319


>tr|Q9KYR1|Q9KYR1_STRCO Tax_Id=1902 SubName: Full=Putative
           transcriptional termination/antitermination
           factor;[Streptomyces coelicolor]
          Length = 340

 Score =  402 bits (1034), Expect = e-110
 Identities = 215/344 (62%), Positives = 263/344 (76%), Gaps = 14/344 (4%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           M+IDM+AL  +  ++ IS + L+E I+SALL AY  T+G +  AR+E+DR TG V V A+
Sbjct: 1   MDIDMSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELDRNTGHVTVWAK 60

Query: 61  ETDDD---GNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAG 117
           E  DD   G    E+DDTP  FGRIAATTA+QV+LQR RDAE++ T GE++ REG+IV G
Sbjct: 61  EDPDDLEEGQAAREFDDTPSDFGRIAATTAKQVILQRLRDAEDDATLGEYAGREGDIVTG 120

Query: 118 VIQ--RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSR 175
           V+Q  RD +      V+V +G      E ++P  EQVPGE+Y HG RLR YVV V++G R
Sbjct: 121 VVQQGRDPKN-----VLVDIGK----LEAILPVQEQVPGETYPHGARLRSYVVRVAKGVR 171

Query: 176 EPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGAC 235
            P +TLSRTHPNLV+KLF+LEVPEIADGSVEI A+AREAGHR+KIAVRS   GLNAKGAC
Sbjct: 172 GPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGLNAKGAC 231

Query: 236 IGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVP 295
           IGPMG RVRNVM EL+GEKIDI+D+ +DPA  VANALSPA+V  V V+D  AR+ARV+VP
Sbjct: 232 IGPMGGRVRNVMGELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAARSARVIVP 291

Query: 296 DFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGA 339
           D+QLSLAIGKEGQNARLAARLTGWRIDIR D+ + S   PE+ +
Sbjct: 292 DYQLSLAIGKEGQNARLAARLTGWRIDIRPDTEQPSDASPEQSS 335


>tr|C5BWS5|C5BWS5_BEUC1 Tax_Id=471853 SubName: Full=NusA
           antitermination factor;[Beutenbergia cavernae]
          Length = 346

 Score =  400 bits (1028), Expect = e-109
 Identities = 212/348 (60%), Positives = 264/348 (75%), Gaps = 9/348 (2%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           M+IDM+AL A+E +R IS++ L+  I+ ALL+AY  T G   +AR+ +DR++G V V+A 
Sbjct: 1   MDIDMSALRALEREREISLDVLVGAIEQALLSAYERTPGAYPEARVHLDRQSGHVTVLAT 60

Query: 61  ETDDDGN--VISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAGV 118
           E   +G+  V  E+D TPEGFGRIA +TARQV++QR RDAE+++  G F  REGE++AGV
Sbjct: 61  EVVGEGDEEVRREFDHTPEGFGRIATSTARQVIIQRLRDAEDDQVLGTFRGREGELIAGV 120

Query: 119 IQRDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSREPL 178
           +Q+  R    G V+V +G      E V+P  EQVPGESY HG R+R YV+ VSRG + P 
Sbjct: 121 VQQGGRV---GAVLVDVGGV----EAVLPPHEQVPGESYPHGERIRAYVLDVSRGLKGPS 173

Query: 179 ITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACIGP 238
           ITLSRTHPN VR++F+LEVPE+ADGSVEI A+AREAGHR+K+AVRS VPG+ AKGACIGP
Sbjct: 174 ITLSRTHPNFVRRMFALEVPEVADGSVEIAALAREAGHRTKMAVRSLVPGVGAKGACIGP 233

Query: 239 MGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPDFQ 298
           MGQRVR VM+EL GEKIDI+D+ EDPARFVA ALSPA+V SV ++D  AR+ARV+VPD+Q
Sbjct: 234 MGQRVRAVMAELRGEKIDIVDFSEDPARFVAAALSPARVSSVQIVDAEARSARVIVPDYQ 293

Query: 299 LSLAIGKEGQNARLAARLTGWRIDIRGDSPEQSAEHPERGASRGLAHD 346
           LSLAIGKEGQNARLAARLTGWRIDIR D+        E     G A D
Sbjct: 294 LSLAIGKEGQNARLAARLTGWRIDIRPDTQPADDAASEDATPSGDAGD 341


>tr|Q82K51|Q82K51_STRAW Tax_Id=33903 (nusA)SubName: Full=Putative
           transcriptional termination/antitermination
           factor;[Streptomyces avermitilis]
          Length = 328

 Score =  397 bits (1021), Expect = e-109
 Identities = 214/338 (63%), Positives = 264/338 (78%), Gaps = 15/338 (4%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQTDARIEIDRKTGVVRVMAR 60
           M+IDM+AL  +  ++ IS + L+E I+SALL AY  T+G +  AR+E++R+TG V V A+
Sbjct: 1   MDIDMSALRGLVREKEISFDLLVEAIESALLIAYHRTEGSRRHARVELNRETGHVTVWAK 60

Query: 61  ETDDD---GNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVAG 117
           E  +D   G    E+DDTP GFGRIAATTA+QV+LQR RDAE++ T GE++ REG+IV G
Sbjct: 61  EDPEDLEEGQEAREFDDTPSGFGRIAATTAKQVILQRLRDAEDDATLGEYAGREGDIVTG 120

Query: 118 VIQ--RDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSR 175
           V+Q  RD +      V+V +G      E ++P  EQVPGE+Y+HG RLR YVV V++G R
Sbjct: 121 VVQQGRDPKN-----VLVDIGK----LEAILPVQEQVPGETYQHGLRLRSYVVRVAKGVR 171

Query: 176 EPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGAC 235
            P +TLSRTHPNLV+KLF+LEVPEIADGSVEI A+AREAGHR+KIAVRS   GLNAKGAC
Sbjct: 172 GPSVTLSRTHPNLVKKLFALEVPEIADGSVEISAIAREAGHRTKIAVRSTRSGLNAKGAC 231

Query: 236 IGPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVP 295
           IGPMG RVRNVM+EL+GEKIDI+D+ +DPA  VANALSPA+V  V V+D  AR+ARV VP
Sbjct: 232 IGPMGGRVRNVMAELNGEKIDIVDWSDDPAEMVANALSPARVSKVEVVDLAARSARVTVP 291

Query: 296 DFQLSLAIGKEGQNARLAARLTGWRIDIRGDSPEQSAE 333
           D+QLSLAIGKEGQNARLAARLTGWRIDIR D+ EQS +
Sbjct: 292 DYQLSLAIGKEGQNARLAARLTGWRIDIRPDT-EQSGD 328


>tr|Q6NGN0|Q6NGN0_CORDI Tax_Id=1717 SubName: Full=Putative N
           utilization related protein;[Corynebacterium
           diphtheriae]
          Length = 332

 Score =  397 bits (1021), Expect = e-109
 Identities = 195/331 (58%), Positives = 255/331 (77%), Gaps = 4/331 (1%)

Query: 1   MNIDMAALHAIEVDRGISVNELLETIKSALLTAYRHTQGHQT----DARIEIDRKTGVVR 56
           MNID+ AL AIE DR I+V+ELLETI  ALL AY+  +   T     AR++I+  TG V 
Sbjct: 1   MNIDVQALKAIEADRNIAVDELLETIARALLFAYQEYKDTNTVENSRARVDINSVTGHVS 60

Query: 57  VMARETDDDGNVISEWDDTPEGFGRIAATTARQVMLQRFRDAENERTYGEFSTREGEIVA 116
           V+  E D+DG V +E+DDTPE FGR+ A   R  +++R R+AE  + Y  +S  EG +V+
Sbjct: 61  VIVSELDEDGVVTTEYDDTPENFGRVGAQAVRDAIVRRLREAETLKAYDAYSEYEGRVVS 120

Query: 117 GVIQRDSRANARGLVVVRMGSETKASEGVIPSAEQVPGESYEHGNRLRCYVVGVSRGSRE 176
           G++Q D  AN +G+VV+ +G+E    +G++  AEQ+PGES++HG+R++ YVVG++R  R+
Sbjct: 121 GIVQADIFANEKGIVVIHLGTEVDGQDGILIPAEQIPGESFKHGDRVKAYVVGINRTPRD 180

Query: 177 PLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVPGLNAKGACI 236
             I LSRTHP LVR+LF LEVPE+ADGSVEI+ +AREAGHRSK+AV++ V GLNAKGACI
Sbjct: 181 LQINLSRTHPELVRRLFELEVPEVADGSVEIIGIAREAGHRSKVAVKATVKGLNAKGACI 240

Query: 237 GPMGQRVRNVMSELSGEKIDIIDYDEDPARFVANALSPAKVVSVSVIDQTARAARVVVPD 296
           GP GQRV N+M+EL GEKIDIID+D+DPA+FV NAL+P+KVV V + D  A+ A+V VPD
Sbjct: 241 GPRGQRVNNIMNELGGEKIDIIDFDDDPAKFVGNALAPSKVVHVEITDAEAQTAQVTVPD 300

Query: 297 FQLSLAIGKEGQNARLAARLTGWRIDIRGDS 327
           +QLSLAIGKEGQNARLAARLTGW+IDIR D+
Sbjct: 301 YQLSLAIGKEGQNARLAARLTGWKIDIRSDA 331


  Database: Amellifera_nr
    Posted date:  Feb 5, 2010  5:10 AM
  Number of letters in database: 3,846,993,858
  Number of sequences in database:  11,275,203
  
Lambda     K      H
   0.316    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11275203
Number of Hits to DB: 2,387,193,292
Number of extensions: 94137500
Number of successful extensions: 259140
Number of sequences better than 10.0: 1884
Number of HSP's gapped: 256122
Number of HSP's successfully gapped: 1887
Length of query: 347
Length of database: 3,846,993,858
Length adjustment: 138
Effective length of query: 209
Effective length of database: 2,291,015,844
Effective search space: 478822311396
Effective search space used: 478822311396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 81 (35.8 bits)