BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_1917 (301 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HKU5|B2HKU5_MYCMM Tax_Id=216594 (truB)SubName: Full=tRNA ps... 518 e-145 sp|A0PQD9|TRUB_MYCUA Tax_Id=362242 (truB)RecName: Full=tRNA pseu... 512 e-143 sp|P62190|TRUB_MYCTU Tax_Id=1773 (truB)RecName: Full=tRNA pseudo... 392 e-107 sp|A5U6E6|TRUB_MYCTA Tax_Id=419947 (truB)RecName: Full=tRNA pseu... 392 e-107 sp|Q9Z5I4|TRUB_MYCLE Tax_Id=1769 (truB)RecName: Full=tRNA pseudo... 392 e-107 sp|A1KMD6|TRUB_MYCBP Tax_Id=410289 (truB)RecName: Full=tRNA pseu... 392 e-107 sp|P62189|TRUB_MYCBO Tax_Id=1765 (truB)RecName: Full=tRNA pseudo... 392 e-107 tr|C6DX50|C6DX50_MYCTK Tax_Id=478434 SubName: Full=tRNA pseudour... 392 e-107 tr|C1AFQ7|C1AFQ7_MYCBT Tax_Id=561275 (truB)SubName: Full=tRNA ps... 392 e-107 tr|B8ZRS9|B8ZRS9_MYCLB Tax_Id=561304 (truB)SubName: Full=tRNA ps... 392 e-107 tr|A5WR44|A5WR44_MYCTF Tax_Id=336982 SubName: Full=tRNA pseudour... 392 e-107 tr|A4KK67|A4KK67_MYCTU Tax_Id=395095 SubName: Full=TRNA pseudour... 392 e-107 tr|A2VLC7|A2VLC7_MYCTU Tax_Id=348776 SubName: Full=TRNA pseudour... 392 e-107 tr|A1T7J3|A1T7J3_MYCVP Tax_Id=350058 SubName: Full=tRNA pseudour... 381 e-104 tr|A0QVP8|A0QVP8_MYCS2 Tax_Id=246196 (truB)SubName: Full=tRNA ps... 378 e-103 sp|Q73VW3|TRUB_MYCPA Tax_Id=1770 (truB)RecName: Full=tRNA pseudo... 373 e-101 sp|A0QIX1|TRUB_MYCA1 Tax_Id=243243 (truB)RecName: Full=tRNA pseu... 370 e-101 tr|A4TCH2|A4TCH2_MYCGI Tax_Id=350054 SubName: Full=tRNA pseudour... 365 5e-99 sp|Q1BA81|TRUB_MYCSS Tax_Id=164756 (truB)RecName: Full=tRNA pseu... 362 2e-98 sp|A1UET1|TRUB_MYCSK Tax_Id=189918 (truB)RecName: Full=tRNA pseu... 362 2e-98 sp|A3PY88|TRUB_MYCSJ Tax_Id=164757 (truB)RecName: Full=tRNA pseu... 362 2e-98 sp|B1MD72|TRUB_MYCA9 Tax_Id=561007 (truB)RecName: Full=tRNA pseu... 355 3e-96 tr|D0LBJ3|D0LBJ3_GORB4 Tax_Id=526226 SubName: Full=tRNA pseudour... 311 8e-83 sp|Q0S212|TRUB_RHOSR Tax_Id=101510 (truB)RecName: Full=tRNA pseu... 310 2e-82 tr|C1B320|C1B320_RHOOB Tax_Id=632772 (truB)SubName: Full=tRNA ps... 307 9e-82 tr|C0ZYB2|C0ZYB2_RHOE4 Tax_Id=234621 (truB)SubName: Full=tRNA ps... 306 2e-81 tr|C3JK60|C3JK60_RHOER Tax_Id=596309 (truB)SubName: Full=tRNA ps... 305 3e-81 sp|Q5YSE0|TRUB_NOCFA Tax_Id=37329 (truB)RecName: Full=tRNA pseud... 304 7e-81 tr|C2ANZ2|C2ANZ2_TSUPA Tax_Id=521096 SubName: Full=tRNA pseudour... 299 3e-79 tr|C6WDK2|C6WDK2_ACTMD Tax_Id=446462 SubName: Full=tRNA pseudour... 296 3e-78 tr|C2BNY8|C2BNY8_9CORY Tax_Id=525264 (truB)SubName: Full=tRNA ps... 291 5e-77 tr|C6RAH4|C6RAH4_9CORY Tax_Id=553206 (truB)SubName: Full=tRNA ps... 290 1e-76 tr|C2CNX5|C2CNX5_CORST Tax_Id=525268 (truB)SubName: Full=tRNA ps... 289 2e-76 tr|C8NU03|C8NU03_9CORY Tax_Id=585529 (truB)SubName: Full=tRNA ps... 283 1e-74 tr|C0WKN3|C0WKN3_9CORY Tax_Id=525260 (truB)SubName: Full=tRNA ps... 283 2e-74 sp|C3PH13|TRUB_CORA7 Tax_Id=548476 (truB)RecName: Full=tRNA pseu... 281 5e-74 sp|P60343|TRUB_CORDI Tax_Id=1717 (truB)RecName: Full=tRNA pseudo... 280 1e-73 tr|C7MQV8|C7MQV8_SACVD Tax_Id=471857 SubName: Full=tRNA pseudour... 277 1e-72 sp|A4QEY6|TRUB_CORGB Tax_Id=340322 (truB)RecName: Full=tRNA pseu... 276 2e-72 tr|A4FM27|A4FM27_SACEN Tax_Id=405948 SubName: Full=Putative unch... 276 2e-72 sp|Q8NP46|TRUB_CORGL Tax_Id=1718 (truB)RecName: Full=tRNA pseudo... 275 5e-72 tr|C0XSF2|C0XSF2_9CORY Tax_Id=525263 (truB)SubName: Full=tRNA ps... 273 2e-71 tr|A8M755|A8M755_SALAI Tax_Id=391037 SubName: Full=tRNA pseudour... 268 4e-70 sp|Q8FPB3|TRUB_COREF Tax_Id=152794 (truB)RecName: Full=tRNA pseu... 265 4e-69 tr|C8NPI1|C8NPI1_COREF Tax_Id=196164 (truB)SubName: Full=tRNA ps... 265 4e-69 tr|C2GKZ3|C2GKZ3_9CORY Tax_Id=548478 (truB)SubName: Full=tRNA ps... 264 1e-68 tr|C0VVH0|C0VVH0_9CORY Tax_Id=548477 (truB)SubName: Full=tRNA ps... 264 1e-68 tr|B8HG60|B8HG60_ARTCA Tax_Id=452863 SubName: Full=tRNA pseudour... 263 2e-68 tr|C4RD76|C4RD76_9ACTO Tax_Id=219305 SubName: Full=tRNA pseudour... 262 3e-68 tr|C4EJW6|C4EJW6_STRRS Tax_Id=479432 SubName: Full=tRNA pseudour... 259 4e-67 >tr|B2HKU5|B2HKU5_MYCMM Tax_Id=216594 (truB)SubName: Full=tRNA pseudouridine synthase B TruB;[Mycobacterium marinum] Length = 301 Score = 518 bits (1334), Expect = e-145 Identities = 273/301 (90%), Positives = 273/301 (90%) Query: 1 MSRQNAGPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIE 60 MSRQNAGPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIE Sbjct: 1 MSRQNAGPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIE 60 Query: 61 RATKILGLLTATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDI 120 RATKILGLLTATSKSYAATIRLGQTTSTEDAEGEPLASVS LDLTGDI Sbjct: 61 RATKILGLLTATSKSYAATIRLGQTTSTEDAEGEPLASVSAEHVAPEAIAAAILDLTGDI 120 Query: 121 RQVPSAVSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCS 180 RQVPSAVSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCS Sbjct: 121 RQVPSAVSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCS 180 Query: 181 SGTYIXXXXXXXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLL 240 SGTYI HLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLL Sbjct: 181 SGTYIRALARDLGAALDVGGHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLL 240 Query: 241 MFPRRDLTVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPAT 300 MFPRRDLTVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPAT Sbjct: 241 MFPRRDLTVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPAT 300 Query: 301 M 301 M Sbjct: 301 M 301 >sp|A0PQD9|TRUB_MYCUA Tax_Id=362242 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium ulcerans] Length = 301 Score = 512 bits (1319), Expect = e-143 Identities = 270/301 (89%), Positives = 271/301 (90%) Query: 1 MSRQNAGPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIE 60 MSRQNAGPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRR+GHAGTLDPMATGVLVIGIE Sbjct: 1 MSRQNAGPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRLGHAGTLDPMATGVLVIGIE 60 Query: 61 RATKILGLLTATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDI 120 RATKILGLL ATSKSYAATIRLGQTTSTEDAEGEPLASVS LDLTGDI Sbjct: 61 RATKILGLLIATSKSYAATIRLGQTTSTEDAEGEPLASVSAEHVAPEAIAAAILDLTGDI 120 Query: 121 RQVPSAVSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCS 180 RQVPSAVSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCS Sbjct: 121 RQVPSAVSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCS 180 Query: 181 SGTYIXXXXXXXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLL 240 SGTYI HLTSLRRTRV HFDLSQAASLDELAERPALSLTLDQACLL Sbjct: 181 SGTYIRALARDLGAALDVGGHLTSLRRTRVSHFDLSQAASLDELAERPALSLTLDQACLL 240 Query: 241 MFPRRDLTVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPAT 300 MFPRRDLTVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPAT Sbjct: 241 MFPRRDLTVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPAT 300 Query: 301 M 301 M Sbjct: 301 M 301 >sp|P62190|TRUB_MYCTU Tax_Id=1773 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=MTB-TRUB;[Mycobacterium tuberculosis] Length = 298 Score = 392 bits (1007), Expect = e-107 Identities = 205/291 (70%), Positives = 229/291 (78%) Query: 11 GPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLT 70 GPGIVV+DKP MTSHDVVGRCRRIF TRRVGHAGTLDPMATGVLVIGIERATKILGLLT Sbjct: 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 Query: 71 ATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAI 130 A KSYAATIRLGQTTSTEDAEG+ L SV L G+IRQVPS+VSAI Sbjct: 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 Query: 131 KVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXX 190 KV GRRAY+LAR+G++V+L ARP+RIDRFEL+ RR +IDIDVE+DCSSGTYI Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALAR 184 Query: 191 XXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVD 250 H+T+LRRTRVG F+L QA SLD+LAERPALSL+LD+ACLLMF RRDLT Sbjct: 185 DLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAA 244 Query: 251 ESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 E+ + NGR L GIDG+YAA DADGRVIALLRDEG RT+SV V+RPATM Sbjct: 245 EASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >sp|A5U6E6|TRUB_MYCTA Tax_Id=419947 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium tuberculosis] Length = 298 Score = 392 bits (1007), Expect = e-107 Identities = 205/291 (70%), Positives = 229/291 (78%) Query: 11 GPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLT 70 GPGIVV+DKP MTSHDVVGRCRRIF TRRVGHAGTLDPMATGVLVIGIERATKILGLLT Sbjct: 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 Query: 71 ATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAI 130 A KSYAATIRLGQTTSTEDAEG+ L SV L G+IRQVPS+VSAI Sbjct: 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 Query: 131 KVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXX 190 KV GRRAY+LAR+G++V+L ARP+RIDRFEL+ RR +IDIDVE+DCSSGTYI Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALAR 184 Query: 191 XXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVD 250 H+T+LRRTRVG F+L QA SLD+LAERPALSL+LD+ACLLMF RRDLT Sbjct: 185 DLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAA 244 Query: 251 ESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 E+ + NGR L GIDG+YAA DADGRVIALLRDEG RT+SV V+RPATM Sbjct: 245 EASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >sp|Q9Z5I4|TRUB_MYCLE Tax_Id=1769 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium leprae] Length = 320 Score = 392 bits (1007), Expect = e-107 Identities = 209/303 (68%), Positives = 229/303 (75%), Gaps = 5/303 (1%) Query: 1 MSRQNAGPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIE 60 MS + G G GPGIVV+DKP MTSHDVV RCRRIF TRRVGHAGTLDPMATGVLV+G++ Sbjct: 1 MSESSTGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVD 60 Query: 61 RATKILGLLTATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDI 120 RATKILGLL SK Y ATIRLGQTTSTEDAEGE L VS L GDI Sbjct: 61 RATKILGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDI 120 Query: 121 RQVPSAVSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRG-----ADVIDIDV 175 +QVPSAVSAIKVDGRRAY+L REG VEL ARPVRIDRFE++ +R G ADVID+DV Sbjct: 121 KQVPSAVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDV 180 Query: 176 EVDCSSGTYIXXXXXXXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLD 235 EV+CSSGTYI HLTSLRRTRVG F+L QA SL++LAE P LS TLD Sbjct: 181 EVECSSGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLD 240 Query: 236 QACLLMFPRRDLTVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVV 295 + CLLMFPRRDLTV E ++ NGRP+ AGIDGIYAASDADGRVIALLRDEG RTKSVVV Sbjct: 241 ETCLLMFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVV 300 Query: 296 IRP 298 + P Sbjct: 301 LHP 303 >sp|A1KMD6|TRUB_MYCBP Tax_Id=410289 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium bovis] Length = 298 Score = 392 bits (1007), Expect = e-107 Identities = 205/291 (70%), Positives = 229/291 (78%) Query: 11 GPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLT 70 GPGIVV+DKP MTSHDVVGRCRRIF TRRVGHAGTLDPMATGVLVIGIERATKILGLLT Sbjct: 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 Query: 71 ATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAI 130 A KSYAATIRLGQTTSTEDAEG+ L SV L G+IRQVPS+VSAI Sbjct: 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 Query: 131 KVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXX 190 KV GRRAY+LAR+G++V+L ARP+RIDRFEL+ RR +IDIDVE+DCSSGTYI Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALAR 184 Query: 191 XXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVD 250 H+T+LRRTRVG F+L QA SLD+LAERPALSL+LD+ACLLMF RRDLT Sbjct: 185 DLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAA 244 Query: 251 ESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 E+ + NGR L GIDG+YAA DADGRVIALLRDEG RT+SV V+RPATM Sbjct: 245 EASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >sp|P62189|TRUB_MYCBO Tax_Id=1765 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium bovis] Length = 298 Score = 392 bits (1007), Expect = e-107 Identities = 205/291 (70%), Positives = 229/291 (78%) Query: 11 GPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLT 70 GPGIVV+DKP MTSHDVVGRCRRIF TRRVGHAGTLDPMATGVLVIGIERATKILGLLT Sbjct: 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 Query: 71 ATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAI 130 A KSYAATIRLGQTTSTEDAEG+ L SV L G+IRQVPS+VSAI Sbjct: 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 Query: 131 KVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXX 190 KV GRRAY+LAR+G++V+L ARP+RIDRFEL+ RR +IDIDVE+DCSSGTYI Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALAR 184 Query: 191 XXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVD 250 H+T+LRRTRVG F+L QA SLD+LAERPALSL+LD+ACLLMF RRDLT Sbjct: 185 DLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAA 244 Query: 251 ESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 E+ + NGR L GIDG+YAA DADGRVIALLRDEG RT+SV V+RPATM Sbjct: 245 EASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|C6DX50|C6DX50_MYCTK Tax_Id=478434 SubName: Full=tRNA pseudouridine synthase B truB;[Mycobacterium tuberculosis] Length = 298 Score = 392 bits (1007), Expect = e-107 Identities = 205/291 (70%), Positives = 229/291 (78%) Query: 11 GPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLT 70 GPGIVV+DKP MTSHDVVGRCRRIF TRRVGHAGTLDPMATGVLVIGIERATKILGLLT Sbjct: 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 Query: 71 ATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAI 130 A KSYAATIRLGQTTSTEDAEG+ L SV L G+IRQVPS+VSAI Sbjct: 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 Query: 131 KVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXX 190 KV GRRAY+LAR+G++V+L ARP+RIDRFEL+ RR +IDIDVE+DCSSGTYI Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALAR 184 Query: 191 XXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVD 250 H+T+LRRTRVG F+L QA SLD+LAERPALSL+LD+ACLLMF RRDLT Sbjct: 185 DLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAA 244 Query: 251 ESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 E+ + NGR L GIDG+YAA DADGRVIALLRDEG RT+SV V+RPATM Sbjct: 245 EASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|C1AFQ7|C1AFQ7_MYCBT Tax_Id=561275 (truB)SubName: Full=tRNA pseudouridine synthase B; EC=4.2.1.70;[Mycobacterium bovis] Length = 298 Score = 392 bits (1007), Expect = e-107 Identities = 205/291 (70%), Positives = 229/291 (78%) Query: 11 GPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLT 70 GPGIVV+DKP MTSHDVVGRCRRIF TRRVGHAGTLDPMATGVLVIGIERATKILGLLT Sbjct: 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 Query: 71 ATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAI 130 A KSYAATIRLGQTTSTEDAEG+ L SV L G+IRQVPS+VSAI Sbjct: 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 Query: 131 KVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXX 190 KV GRRAY+LAR+G++V+L ARP+RIDRFEL+ RR +IDIDVE+DCSSGTYI Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALAR 184 Query: 191 XXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVD 250 H+T+LRRTRVG F+L QA SLD+LAERPALSL+LD+ACLLMF RRDLT Sbjct: 185 DLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAA 244 Query: 251 ESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 E+ + NGR L GIDG+YAA DADGRVIALLRDEG RT+SV V+RPATM Sbjct: 245 EASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|B8ZRS9|B8ZRS9_MYCLB Tax_Id=561304 (truB)SubName: Full=tRNA pseudouridine 55 synthase;[Mycobacterium leprae] Length = 320 Score = 392 bits (1007), Expect = e-107 Identities = 209/303 (68%), Positives = 229/303 (75%), Gaps = 5/303 (1%) Query: 1 MSRQNAGPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIE 60 MS + G G GPGIVV+DKP MTSHDVV RCRRIF TRRVGHAGTLDPMATGVLV+G++ Sbjct: 1 MSESSTGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVD 60 Query: 61 RATKILGLLTATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDI 120 RATKILGLL SK Y ATIRLGQTTSTEDAEGE L VS L GDI Sbjct: 61 RATKILGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDI 120 Query: 121 RQVPSAVSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRG-----ADVIDIDV 175 +QVPSAVSAIKVDGRRAY+L REG VEL ARPVRIDRFE++ +R G ADVID+DV Sbjct: 121 KQVPSAVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDV 180 Query: 176 EVDCSSGTYIXXXXXXXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLD 235 EV+CSSGTYI HLTSLRRTRVG F+L QA SL++LAE P LS TLD Sbjct: 181 EVECSSGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLD 240 Query: 236 QACLLMFPRRDLTVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVV 295 + CLLMFPRRDLTV E ++ NGRP+ AGIDGIYAASDADGRVIALLRDEG RTKSVVV Sbjct: 241 ETCLLMFPRRDLTVSEVEATSNGRPISSAGIDGIYAASDADGRVIALLRDEGPRTKSVVV 300 Query: 296 IRP 298 + P Sbjct: 301 LHP 303 >tr|A5WR44|A5WR44_MYCTF Tax_Id=336982 SubName: Full=tRNA pseudouridine synthase B truB;[Mycobacterium tuberculosis] Length = 298 Score = 392 bits (1007), Expect = e-107 Identities = 205/291 (70%), Positives = 229/291 (78%) Query: 11 GPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLT 70 GPGIVV+DKP MTSHDVVGRCRRIF TRRVGHAGTLDPMATGVLVIGIERATKILGLLT Sbjct: 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 Query: 71 ATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAI 130 A KSYAATIRLGQTTSTEDAEG+ L SV L G+IRQVPS+VSAI Sbjct: 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 Query: 131 KVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXX 190 KV GRRAY+LAR+G++V+L ARP+RIDRFEL+ RR +IDIDVE+DCSSGTYI Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALAR 184 Query: 191 XXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVD 250 H+T+LRRTRVG F+L QA SLD+LAERPALSL+LD+ACLLMF RRDLT Sbjct: 185 DLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAA 244 Query: 251 ESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 E+ + NGR L GIDG+YAA DADGRVIALLRDEG RT+SV V+RPATM Sbjct: 245 EASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|A4KK67|A4KK67_MYCTU Tax_Id=395095 SubName: Full=TRNA pseudouridine synthase B truB;[Mycobacterium tuberculosis str. Haarlem] Length = 298 Score = 392 bits (1007), Expect = e-107 Identities = 205/291 (70%), Positives = 229/291 (78%) Query: 11 GPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLT 70 GPGIVV+DKP MTSHDVVGRCRRIF TRRVGHAGTLDPMATGVLVIGIERATKILGLLT Sbjct: 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 Query: 71 ATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAI 130 A KSYAATIRLGQTTSTEDAEG+ L SV L G+IRQVPS+VSAI Sbjct: 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 Query: 131 KVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXX 190 KV GRRAY+LAR+G++V+L ARP+RIDRFEL+ RR +IDIDVE+DCSSGTYI Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALAR 184 Query: 191 XXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVD 250 H+T+LRRTRVG F+L QA SLD+LAERPALSL+LD+ACLLMF RRDLT Sbjct: 185 DLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAA 244 Query: 251 ESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 E+ + NGR L GIDG+YAA DADGRVIALLRDEG RT+SV V+RPATM Sbjct: 245 EASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|A2VLC7|A2VLC7_MYCTU Tax_Id=348776 SubName: Full=TRNA pseudouridine synthase B truB;[Mycobacterium tuberculosis C] Length = 298 Score = 392 bits (1007), Expect = e-107 Identities = 205/291 (70%), Positives = 229/291 (78%) Query: 11 GPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLT 70 GPGIVV+DKP MTSHDVVGRCRRIF TRRVGHAGTLDPMATGVLVIGIERATKILGLLT Sbjct: 5 GPGIVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLT 64 Query: 71 ATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAI 130 A KSYAATIRLGQTTSTEDAEG+ L SV L G+IRQVPS+VSAI Sbjct: 65 AAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAI 124 Query: 131 KVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXX 190 KV GRRAY+LAR+G++V+L ARP+RIDRFEL+ RR +IDIDVE+DCSSGTYI Sbjct: 125 KVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVEIDCSSGTYIRALAR 184 Query: 191 XXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVD 250 H+T+LRRTRVG F+L QA SLD+LAERPALSL+LD+ACLLMF RRDLT Sbjct: 185 DLGDALGVGGHVTALRRTRVGRFELDQARSLDDLAERPALSLSLDEACLLMFARRDLTAA 244 Query: 251 ESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 E+ + NGR L GIDG+YAA DADGRVIALLRDEG RT+SV V+RPATM Sbjct: 245 EASAAANGRSLPAVGIDGVYAACDADGRVIALLRDEGSRTRSVAVLRPATM 295 >tr|A1T7J3|A1T7J3_MYCVP Tax_Id=350058 SubName: Full=tRNA pseudouridine synthase B; EC=4.2.1.70;[Mycobacterium vanbaalenii] Length = 302 Score = 381 bits (978), Expect = e-104 Identities = 197/290 (67%), Positives = 227/290 (78%) Query: 12 PGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTA 71 PG+VVVDKPG MTSHDVVGRCRR+FGTR+VGHAGTLDPMATGVLV+GIERATKILGLLTA Sbjct: 13 PGLVVVDKPGGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTA 72 Query: 72 TSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIK 131 T KSYAATIRLGQTTSTEDAEGE L SVS L G I Q+PSAVSAIK Sbjct: 73 TDKSYAATIRLGQTTSTEDAEGEVLQSVSAAEVTDAQIEAAIAPLRGPIDQIPSAVSAIK 132 Query: 132 VDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXX 191 + G+RAYQ+ R+GQTVELAARPVRIDRFE++++RR +++D+DV VDCSSGTYI Sbjct: 133 IAGKRAYQMVRDGQTVELAARPVRIDRFEVLEVRRDGELVDVDVAVDCSSGTYIRALARD 192 Query: 192 XXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDE 251 HLT+LRRTRVG F L QA +LDELAE P LS +LD+ACL F RRD+T E Sbjct: 193 VGAALGVGGHLTALRRTRVGGFGLEQARTLDELAEAPRLSYSLDEACLRAFARRDITEAE 252 Query: 252 SQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 ++S +GR L AGIDG+YAA+ DGRVIALL DEG RT+SVVV+RPAT+ Sbjct: 253 AESASHGRALPVAGIDGVYAATAPDGRVIALLSDEGDRTRSVVVLRPATL 302 >tr|A0QVP8|A0QVP8_MYCS2 Tax_Id=246196 (truB)SubName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-;[Mycobacterium smegmatis] Length = 303 Score = 378 bits (970), Expect = e-103 Identities = 197/299 (65%), Positives = 230/299 (76%), Gaps = 3/299 (1%) Query: 6 AGPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKI 65 A G PG+V+VDKP MTSHDVVGRCRR+FGTR+VGHAGTLDPMATGVLVIGIERATKI Sbjct: 5 ARSGAEPGLVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKI 64 Query: 66 LGLLTATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPS 125 LGLLTAT KSYAATIRLG+TT+TEDAEGE + V DL GDI QVPS Sbjct: 65 LGLLTATDKSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPS 124 Query: 126 AVSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRG---ADVIDIDVEVDCSSG 182 AVSAIKV G+RAY+LAREGQ+VELAARPVRIDRF+++D+RR D +D+DVEVDCSSG Sbjct: 125 AVSAIKVGGQRAYKLAREGQSVELAARPVRIDRFDVLDIRRPDDFPDFVDVDVEVDCSSG 184 Query: 183 TYIXXXXXXXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMF 242 TYI HLT LRRTRVG + L +A +LDELAE P LS +LD ACL+ F Sbjct: 185 TYIRALARDVGAALGVGGHLTVLRRTRVGRYGLDEAHTLDELAEHPQLSYSLDTACLVGF 244 Query: 243 PRRDLTVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 PRRDL+ +E++ +GRPL PAGIDG+YAA+ DGRVIALL+D RT++VVV+RPAT+ Sbjct: 245 PRRDLSAEETEDTRHGRPLRPAGIDGVYAATAPDGRVIALLQDGAGRTRNVVVLRPATL 303 >sp|Q73VW3|TRUB_MYCPA Tax_Id=1770 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium paratuberculosis] Length = 293 Score = 373 bits (958), Expect = e-101 Identities = 195/290 (67%), Positives = 219/290 (75%) Query: 12 PGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTA 71 PG+VVVDKP MTSHDVVGRCRRIF TRRVGHAGTLDPMATGVLV+G+ERATKILGLLTA Sbjct: 4 PGLVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTA 63 Query: 72 TSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIK 131 +KSY+ATIRLGQ TST+DAEG+ SV L GDI QVPS VSAIK Sbjct: 64 AAKSYSATIRLGQATSTDDAEGDVARSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIK 123 Query: 132 VDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXX 191 V G+RAY+L REGQ VEL ARPVRIDRFE+ LR +D+DVEVDCSSGTY+ Sbjct: 124 VAGKRAYKLVREGQAVELPARPVRIDRFEVRGLRAAGACVDVDVEVDCSSGTYVRALARD 183 Query: 192 XXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDE 251 HLT+LRRTRVG F L QA LDELAE P LS +LD+ACLL+F RRDL+ DE Sbjct: 184 LGAALGVGGHLTALRRTRVGRFGLEQAYGLDELAECPRLSYSLDEACLLIFGRRDLSADE 243 Query: 252 SQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 +++ GNGR L AGIDG+YAA DGRVIALLRDEG RTKSVVV+RPAT+ Sbjct: 244 AEAAGNGRALAAAGIDGVYAACAPDGRVIALLRDEGARTKSVVVLRPATL 293 >sp|A0QIX1|TRUB_MYCA1 Tax_Id=243243 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium avium] Length = 309 Score = 370 bits (951), Expect = e-101 Identities = 197/301 (65%), Positives = 222/301 (73%), Gaps = 11/301 (3%) Query: 12 PGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTA 71 PG+VVVDKP MTSHDVVGRCRRIF TRRVGHAGTLDPMATGVLV+G+ERATKILGLLTA Sbjct: 4 PGLVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTA 63 Query: 72 TSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIK 131 +KSY+ATIRLGQ TST+DAEG+ + SV L GDI QVPS VSAIK Sbjct: 64 AAKSYSATIRLGQATSTDDAEGDVVRSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIK 123 Query: 132 VDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXX 191 V G+RAY+L REGQ VEL ARPVRIDRFE+ DLR + +D+DVEVDCSSGTY+ Sbjct: 124 VAGKRAYKLVREGQAVELPARPVRIDRFEVRDLRAAGECVDVDVEVDCSSGTYVRALARD 183 Query: 192 XXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDE 251 HLT+LRRTRVG F L QA LDELAE P LS +LD+ACLL+F RRDL+ DE Sbjct: 184 LGAALGVGGHLTALRRTRVGRFGLEQAYGLDELAECPRLSYSLDEACLLIFGRRDLSADE 243 Query: 252 SQ-----------SVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPAT 300 ++ + GNGR L AGIDG+YAA DGRVIALLRDEG RT+SVVVIRPAT Sbjct: 244 AEAAGNGRALAAAAAGNGRALAAAGIDGVYAACAPDGRVIALLRDEGARTRSVVVIRPAT 303 Query: 301 M 301 M Sbjct: 304 M 304 >tr|A4TCH2|A4TCH2_MYCGI Tax_Id=350054 SubName: Full=tRNA pseudouridine synthase B; EC=4.2.1.70;[Mycobacterium gilvum] Length = 294 Score = 365 bits (936), Expect = 5e-99 Identities = 190/290 (65%), Positives = 219/290 (75%) Query: 12 PGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTA 71 PG+VVVDKPG MTSHDVVGRCRR+FGTR+VGHAGTLDPMATGVLVIGIERATKILGLLTA Sbjct: 5 PGLVVVDKPGGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTA 64 Query: 72 TSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIK 131 T KSY AT+RLGQTTSTED EGE L VS L G I QVPSAVSAIK Sbjct: 65 TDKSYTATLRLGQTTSTEDTEGELLHQVSAAQVTDEQIERAIAPLRGAIEQVPSAVSAIK 124 Query: 132 VDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXX 191 + G+RAYQ+ R+G+ VE+ ARPVRIDRFE++ +RR DV+D+DV VDCSSGTYI Sbjct: 125 IAGKRAYQMVRDGEQVEIPARPVRIDRFEVLAVRRNGDVVDVDVVVDCSSGTYIRALARD 184 Query: 192 XXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDE 251 HLT+LRRTRVG F L QA +L++LA+ LS +LD+ACL FPRR+LT E Sbjct: 185 VGAALGVGGHLTALRRTRVGGFGLDQARTLEQLADAAELSYSLDEACLHAFPRRELTDAE 244 Query: 252 SQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 G+GR L PAGIDG+YAA+ DGRV+ALL D G RT+SVVVIRPAT+ Sbjct: 245 VVDAGHGRSLAPAGIDGVYAATAPDGRVMALLEDAGPRTRSVVVIRPATL 294 >sp|Q1BA81|TRUB_MYCSS Tax_Id=164756 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium sp.] Length = 297 Score = 362 bits (930), Expect = 2e-98 Identities = 191/296 (64%), Positives = 222/296 (75%) Query: 6 AGPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKI 65 +G G G GIV+VDKP MTSHDVVGRCRRIFGTR+VGHAGTLDPMATGVLV+GI+RATK+ Sbjct: 2 SGAGVGGGIVIVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKL 61 Query: 66 LGLLTATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPS 125 LGLLTAT KSY ATIRLGQTT+TEDAEG+ + + L G+I QVPS Sbjct: 62 LGLLTATDKSYEATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEIDQVPS 121 Query: 126 AVSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYI 185 AVSAIKV G+RAY+LAREGQTVELAAR VRIDRFE++ +RR +D+DV VDCSSGTYI Sbjct: 122 AVSAIKVGGQRAYKLAREGQTVELAARRVRIDRFEVLAIRRVDGFVDVDVAVDCSSGTYI 181 Query: 186 XXXXXXXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRR 245 HLT LRRTRVG F L +A LD LA+ P LS +LD+ACLL FPRR Sbjct: 182 RALARDVGVTLGVGGHLTLLRRTRVGRFGLDEAYPLDALADEPRLSHSLDEACLLSFPRR 241 Query: 246 DLTVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 DLT E++S +GR L PAGIDG+YAA+ DG V+ALL D +RTKSVVV+RPAT+ Sbjct: 242 DLTPAEAESTRHGRALAPAGIDGVYAAAAPDGSVLALLEDGPQRTKSVVVLRPATL 297 >sp|A1UET1|TRUB_MYCSK Tax_Id=189918 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium sp.] Length = 297 Score = 362 bits (930), Expect = 2e-98 Identities = 191/296 (64%), Positives = 222/296 (75%) Query: 6 AGPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKI 65 +G G G GIV+VDKP MTSHDVVGRCRRIFGTR+VGHAGTLDPMATGVLV+GI+RATK+ Sbjct: 2 SGAGVGGGIVIVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKL 61 Query: 66 LGLLTATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPS 125 LGLLTAT KSY ATIRLGQTT+TEDAEG+ + + L G+I QVPS Sbjct: 62 LGLLTATDKSYEATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEIDQVPS 121 Query: 126 AVSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYI 185 AVSAIKV G+RAY+LAREGQTVELAAR VRIDRFE++ +RR +D+DV VDCSSGTYI Sbjct: 122 AVSAIKVGGQRAYKLAREGQTVELAARRVRIDRFEVLAIRRVDGFVDVDVAVDCSSGTYI 181 Query: 186 XXXXXXXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRR 245 HLT LRRTRVG F L +A LD LA+ P LS +LD+ACLL FPRR Sbjct: 182 RALARDVGVTLGVGGHLTLLRRTRVGRFGLDEAYPLDALADEPRLSHSLDEACLLSFPRR 241 Query: 246 DLTVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 DLT E++S +GR L PAGIDG+YAA+ DG V+ALL D +RTKSVVV+RPAT+ Sbjct: 242 DLTPAEAESTRHGRALAPAGIDGVYAAAAPDGSVLALLEDGPQRTKSVVVLRPATL 297 >sp|A3PY88|TRUB_MYCSJ Tax_Id=164757 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium sp.] Length = 297 Score = 362 bits (930), Expect = 2e-98 Identities = 191/296 (64%), Positives = 222/296 (75%) Query: 6 AGPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKI 65 +G G G GIV+VDKP MTSHDVVGRCRRIFGTR+VGHAGTLDPMATGVLV+GI+RATK+ Sbjct: 2 SGAGVGGGIVIVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKL 61 Query: 66 LGLLTATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPS 125 LGLLTAT KSY ATIRLGQTT+TEDAEG+ + + L G+I QVPS Sbjct: 62 LGLLTATDKSYEATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEIDQVPS 121 Query: 126 AVSAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYI 185 AVSAIKV G+RAY+LAREGQTVELAAR VRIDRFE++ +RR +D+DV VDCSSGTYI Sbjct: 122 AVSAIKVGGQRAYKLAREGQTVELAARRVRIDRFEVLAIRRVDGFVDVDVAVDCSSGTYI 181 Query: 186 XXXXXXXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRR 245 HLT LRRTRVG F L +A LD LA+ P LS +LD+ACLL FPRR Sbjct: 182 RALARDVGVTLGVGGHLTLLRRTRVGRFGLDEAYPLDALADEPRLSHSLDEACLLSFPRR 241 Query: 246 DLTVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 DLT E++S +GR L PAGIDG+YAA+ DG V+ALL D +RTKSVVV+RPAT+ Sbjct: 242 DLTPAEAESTRHGRALAPAGIDGVYAAAAPDGSVLALLEDGPQRTKSVVVLRPATL 297 >sp|B1MD72|TRUB_MYCA9 Tax_Id=561007 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Mycobacterium abscessus] Length = 298 Score = 355 bits (912), Expect = 3e-96 Identities = 188/290 (64%), Positives = 219/290 (75%), Gaps = 1/290 (0%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G+V+VDKP MTSHDVV RCRRIF TR+VGHAGTLDPMATGVLVIGIERATKI+GLLT T Sbjct: 9 GLVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLT 68 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 +KSYAATIR GQ+TST+DAEGE L ++S L GDI QVPS+VSAIKV Sbjct: 69 TKSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKV 128 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLR-RGADVIDIDVEVDCSSGTYIXXXXXX 191 DG+RAY+LAREGQ+VELAARPVRI RF+++ +R G D+ID+DVE+DCSSGTYI Sbjct: 129 DGQRAYKLAREGQSVELAARPVRISRFDVLAVRGSGEDLIDVDVEIDCSSGTYIRALARD 188 Query: 192 XXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDE 251 HLT+LRRTRVG F L +A +L+ELA+ L+L LD AC FPRRDL E Sbjct: 189 AGAALGVGGHLTALRRTRVGDFGLDRARTLEELADGATLTLDLDSACRQGFPRRDLDAAE 248 Query: 252 SQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 +V NGRPL PAGI+G YAA DAD RVIALL D+G RT SVVV+RPA + Sbjct: 249 VDAVRNGRPLAPAGIEGTYAAVDADDRVIALLADKGSRTTSVVVLRPANL 298 >tr|D0LBJ3|D0LBJ3_GORB4 Tax_Id=526226 SubName: Full=tRNA pseudouridine synthase B;[Gordonia bronchialis] Length = 299 Score = 311 bits (796), Expect = 8e-83 Identities = 160/289 (55%), Positives = 201/289 (69%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G+++VDK +TSHDVV RCR+IF TRRVGHAGTLDPMATGVLVIGIERATK+LGLL+ T Sbjct: 10 GLLIVDKQAGITSHDVVSRCRKIFNTRRVGHAGTLDPMATGVLVIGIERATKLLGLLSLT 69 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 +KSY ATIRLG T+T+D EGE +AS LTGDI QVP+ VSAIKV Sbjct: 70 TKSYEATIRLGAATTTDDLEGEIIASADASAVTDEQIHSVVAGLTGDIEQVPAKVSAIKV 129 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXXX 192 DGRRA+ L R G +LAARPV + RF+++D RR +D+DV VDCS+GTYI Sbjct: 130 DGRRAHALVRTGAEFDLAARPVTVRRFDVVDTRRDGHFVDLDVVVDCSAGTYIRSLARDL 189 Query: 193 XXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDES 252 HLT+LRRT VG F L A +LDE+ ERP +SL +D+A + FP RD+ DE+ Sbjct: 190 GAELGVGGHLTALRRTAVGPFTLEHALTLDEVRERPHVSLDIDEAVKISFPHRDIDDDEA 249 Query: 253 QSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 +S+ GR L+P G+ GIY D R IAL++++GRR SV+V+RPAT+ Sbjct: 250 ESISQGRWLDPIGMKGIYMVVDPAQRAIALVQEKGRRASSVMVVRPATL 298 >sp|Q0S212|TRUB_RHOSR Tax_Id=101510 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Rhodococcus sp.] Length = 305 Score = 310 bits (793), Expect = 2e-82 Identities = 159/292 (54%), Positives = 201/292 (68%), Gaps = 1/292 (0%) Query: 11 GPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLT 70 G G+++VDK +TSHDVV RCR++ GTR+VGHAGTLDPMATGVLV+G+ERATK+LG L Sbjct: 13 GAGLLIVDKDAGVTSHDVVARCRKLLGTRKVGHAGTLDPMATGVLVLGVERATKLLGFLA 72 Query: 71 ATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAI 130 T+K+Y ATIRLGQ T+T+DAEGE +AS LTGDI+Q+PS+VSAI Sbjct: 73 LTTKAYTATIRLGQATTTDDAEGEVVASADASGVTDEEIAAQVHTLTGDIQQIPSSVSAI 132 Query: 131 KVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYI-XXXX 189 KVDGRRA+ L R G+ ELA R V + RFE++ R +D+DVEV+CSSGTY+ Sbjct: 133 KVDGRRAHALIRAGEEFELAPRSVTVSRFEVVARRTEGAFVDVDVEVECSSGTYVRALAR 192 Query: 190 XXXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTV 249 HLTSLRRTRVG F L A +L++LAE P +SL +D A FP R + Sbjct: 193 DLGIALIGVGGHLTSLRRTRVGPFTLEHARTLEQLAEEPGVSLDIDAAAQTAFPHRQVDA 252 Query: 250 DESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 DE++S+ GR LEP GI G+YAA D G IALL++ GRR SV+V+RPAT+ Sbjct: 253 DEAESISQGRWLEPIGIKGVYAAIDPSGHTIALLQERGRRASSVMVVRPATL 304 >tr|C1B320|C1B320_RHOOB Tax_Id=632772 (truB)SubName: Full=tRNA pseudouridine synthase TruB; EC=5.4.99.12;[Rhodococcus opacus] Length = 305 Score = 307 bits (787), Expect = 9e-82 Identities = 156/292 (53%), Positives = 202/292 (69%), Gaps = 1/292 (0%) Query: 11 GPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLT 70 G G+++VDK +TSHDVV RCR++ GTR+VGHAGTLDPMATGVLV+G+ERATK+LGLL Sbjct: 13 GAGLLIVDKDAGVTSHDVVARCRKLLGTRKVGHAGTLDPMATGVLVLGVERATKLLGLLA 72 Query: 71 ATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAI 130 T+K+Y ATIRLGQ T+T+DAEGE +AS LTGDI+Q+PS+VSAI Sbjct: 73 LTTKAYTATIRLGQATTTDDAEGEIVASADASGVRDEEIAAQVRTLTGDIQQIPSSVSAI 132 Query: 131 KVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYI-XXXX 189 KVDGRRA+ L R G+ ELA R V + RF+++ R +D+DVEV+CSSGTY+ Sbjct: 133 KVDGRRAHALIRAGEEFELAPRSVTVSRFDVVARRTEGPFVDLDVEVECSSGTYVRALAR 192 Query: 190 XXXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTV 249 HLTSLRRTRVG F L A +L++LAE P +SL +D A FP R + Sbjct: 193 DLGIALIGVGGHLTSLRRTRVGPFTLEHARTLEQLAEEPGVSLDIDSAAQTAFPHRQIDA 252 Query: 250 DESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 DE++++ GR LEP G+ G+YAA D G IALL++ G+R SV+V+RPAT+ Sbjct: 253 DEAEAISQGRWLEPIGMKGVYAAIDPSGHTIALLQERGKRASSVMVVRPATL 304 >tr|C0ZYB2|C0ZYB2_RHOE4 Tax_Id=234621 (truB)SubName: Full=tRNA pseudouridine synthase TruB; EC=5.4.99.12;[Rhodococcus erythropolis] Length = 306 Score = 306 bits (784), Expect = 2e-81 Identities = 156/292 (53%), Positives = 204/292 (69%), Gaps = 1/292 (0%) Query: 11 GPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLT 70 G GI++VDK +TSHDVV RCR++ TR+VGHAGTLDPMATGVLV+G+ERATK+LGLL Sbjct: 13 GAGILIVDKEAGITSHDVVARCRKLLNTRKVGHAGTLDPMATGVLVLGVERATKLLGLLA 72 Query: 71 ATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAI 130 T+K+Y+ATIRLG T T+DAEGE L S LTGDI+Q+P++VSAI Sbjct: 73 LTTKAYSATIRLGAATDTDDAEGEVLTSADASQVTDAEIAAIVATLTGDIKQIPASVSAI 132 Query: 131 KVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRR-GADVIDIDVEVDCSSGTYIXXXX 189 KVDG+RA+ L R G+TVELA RPV + FE++ R +D+DV+V+CSSGTYI Sbjct: 133 KVDGQRAHALVRAGETVELAPRPVTVSTFEVLARRDVPGGFVDLDVDVECSSGTYIRSLA 192 Query: 190 XXXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTV 249 HLT+LRRTRVG F L A +L++LA++P +SL +DQA FP R +T Sbjct: 193 RDLGRELGVGGHLTALRRTRVGPFTLEHARTLEDLADQPGVSLDIDQAAQTAFPHRQITA 252 Query: 250 DESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 +E++++ GR LEP G+ GI AA D G IALL+++GRR SV+V+RPAT+ Sbjct: 253 EEAEAISQGRWLEPIGMKGICAAIDPTGHTIALLQEKGRRASSVMVVRPATL 304 >tr|C3JK60|C3JK60_RHOER Tax_Id=596309 (truB)SubName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-;[Rhodococcus erythropolis SK121] Length = 306 Score = 305 bits (782), Expect = 3e-81 Identities = 156/292 (53%), Positives = 203/292 (69%), Gaps = 1/292 (0%) Query: 11 GPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLT 70 G GI++VDK +TSHDVV RCR++ TR+VGHAGTLDPMATGVLV+G+ERATK+LGLL Sbjct: 13 GAGILIVDKEAGITSHDVVARCRKLLNTRKVGHAGTLDPMATGVLVLGVERATKLLGLLA 72 Query: 71 ATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAI 130 T+K+Y+ATIRLG T T+DAEGE L S LTGDI+Q+P++VSAI Sbjct: 73 LTTKAYSATIRLGAATDTDDAEGEVLTSADASQVTDAEIAAIVATLTGDIKQIPASVSAI 132 Query: 131 KVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRR-GADVIDIDVEVDCSSGTYIXXXX 189 KVDG+RA+ L R G+TVELA RPV + FE++ R +D+DV+V+CSSGTYI Sbjct: 133 KVDGQRAHALVRAGETVELAPRPVTVSTFEVLARRDVPGGFVDLDVDVECSSGTYIRSLA 192 Query: 190 XXXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTV 249 HLT+LRRTRVG F L A +L++LA +P +SL +DQA FP R +T Sbjct: 193 RDLGRELGVGGHLTALRRTRVGPFTLEHARTLEDLAHQPGVSLDIDQAAQTAFPHRQITA 252 Query: 250 DESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 +E++++ GR LEP G+ GI AA D G IALL+++GRR SV+V+RPAT+ Sbjct: 253 EEAEAISQGRWLEPIGMKGICAAIDPTGHTIALLQEKGRRASSVMVVRPATL 304 >sp|Q5YSE0|TRUB_NOCFA Tax_Id=37329 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Nocardia farcinica] Length = 306 Score = 304 bits (779), Expect = 7e-81 Identities = 156/286 (54%), Positives = 198/286 (69%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G++VVDK G MTSHDVV RCR+I GTR++GHAGTLDPMATGVLV+G+ERATK+LGLLT T Sbjct: 16 GLLVVDKDGGMTSHDVVARCRKILGTRKIGHAGTLDPMATGVLVLGVERATKLLGLLTLT 75 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 +K+Y ATIRLG T+T+DAEGE L +V LTGDI+QVP+ VSAIK+ Sbjct: 76 TKAYTATIRLGSATTTDDAEGEVLTTVPAGHLGDAEVAAGVAALTGDIQQVPATVSAIKI 135 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXXX 192 G RAY R G+ VELAARPV + RFE++ R A +D+DV V+CSSGTY+ Sbjct: 136 GGERAYARHRAGEQVELAARPVTVSRFEVLARRDVAGFVDLDVVVECSSGTYVRALARDL 195 Query: 193 XXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDES 252 HLT+LRRTRVG F L A +LD LA+ P L+L +D+A + FP R + E+ Sbjct: 196 GAALGVGGHLTALRRTRVGPFTLDHARTLDALADEPRLNLDMDEAVRIAFPHRAIDAREA 255 Query: 253 QSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRP 298 +S+ +GR L+P GI G+YAA ADG IALL ++G+R V V+RP Sbjct: 256 ESLRDGRWLDPVGIPGVYAALTADGTAIALLEEKGKRASPVFVVRP 301 >tr|C2ANZ2|C2ANZ2_TSUPA Tax_Id=521096 SubName: Full=tRNA pseudouridine synthase B; EC=4.2.1.70;[Tsukamurella paurometabola DSM 20162] Length = 297 Score = 299 bits (765), Expect = 3e-79 Identities = 155/289 (53%), Positives = 192/289 (66%) Query: 11 GPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLT 70 G G+++VDKP +TSHDVV RCRR GTR+VGHAGTLDPMATGVLVIGIERATK+LG L Sbjct: 8 GAGLIIVDKPAGLTSHDVVARCRRAMGTRKVGHAGTLDPMATGVLVIGIERATKLLGHLA 67 Query: 71 ATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAI 130 T+K+Y+AT+RLG +TST+DAEGE + LTGDI QVPS VSAI Sbjct: 68 LTTKAYSATVRLGASTSTDDAEGEITGGAAAAGLSDADVIAAMAPLTGDIEQVPSTVSAI 127 Query: 131 KVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXX 190 KVDG+RA+QL REG V+L ARPVR+D F RR D +D+DV V+CSSGTY+ Sbjct: 128 KVDGKRAHQLVREGADVQLTARPVRVDEFAAHAFRRDGDFLDVDVHVECSSGTYVRALAR 187 Query: 191 XXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVD 250 HLT+LRRTRVG + L A +LDEL E P LS +D A F R++T + Sbjct: 188 DLGAALGVGGHLTALRRTRVGPYGLDLAVTLDELFETPRLSYDIDAAIATGFAVREITDE 247 Query: 251 ESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPA 299 ++ + GR L+P G+ G+YAA GR IALL + G R SV V+RP+ Sbjct: 248 QAVDLSLGRWLDPIGMPGVYAAVAPGGRAIALLEESGNRASSVFVVRPS 296 >tr|C6WDK2|C6WDK2_ACTMD Tax_Id=446462 SubName: Full=tRNA pseudouridine synthase B;[Actinosynnema mirum] Length = 299 Score = 296 bits (757), Expect = 3e-78 Identities = 153/292 (52%), Positives = 194/292 (66%) Query: 8 PGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILG 67 P PG+VVVDKP MTSHDVV + RRI GTR+VGHAGTLDPMATGVLV+G+ERATK+LG Sbjct: 7 PAVPPGLVVVDKPDGMTSHDVVAKVRRILGTRKVGHAGTLDPMATGVLVLGVERATKLLG 66 Query: 68 LLTATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAV 127 L SK+Y +TIRLG +T+T+DAEGE L+S LTG I+QVPSAV Sbjct: 67 HLALDSKAYLSTIRLGASTTTDDAEGEVLSSADSTAVPEDAIRAGVAKLTGAIQQVPSAV 126 Query: 128 SAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXX 187 SA+KVDG+RAY R G+ VEL RPV + RF+++ +RR AD ++DV V+CSSGTY+ Sbjct: 127 SAVKVDGKRAYARVRAGEEVELPPRPVTVHRFDVLSIRREADATELDVMVECSSGTYVRA 186 Query: 188 XXXXXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDL 247 HL +LRRTRVG FDL A +L++LA+ P LSL LD A FPRR++ Sbjct: 187 LARDLGVDLGVGGHLAALRRTRVGPFDLRVAKTLEQLADEPGLSLDLDAAVSAAFPRREI 246 Query: 248 TVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPA 299 T E ++ +G+ L G++G Y DG +AL +DEG K VVV+ PA Sbjct: 247 TPSEVVALSHGQRLRAGGVEGTYGVFGPDGHAVALAKDEGPLAKPVVVLTPA 298 >tr|C2BNY8|C2BNY8_9CORY Tax_Id=525264 (truB)SubName: Full=tRNA pseudouridine synthase B;[Corynebacterium pseudogenitalium ATCC 33035] Length = 297 Score = 291 bits (746), Expect = 5e-77 Identities = 151/289 (52%), Positives = 199/289 (68%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G+V+VDKP MTSHDVVGR RR F T++VGHAGTLDPMATGVLV+G+ER TK L + A+ Sbjct: 9 GLVIVDKPAGMTSHDVVGRLRRYFHTKKVGHAGTLDPMATGVLVLGVERGTKFLAHMVAS 68 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 +KSY ATIRLG T+T+DAEGE S LTGDI Q P+AVSAIK+ Sbjct: 69 TKSYDATIRLGAATTTDDAEGEYSWGASAADIDRTAIEAEIAKLTGDIMQKPAAVSAIKI 128 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXXX 192 +GRRA++L REGQ V++ ARPV +D+F+++ RR D ID+DV VDCSSGTYI Sbjct: 129 NGRRAHELVREGQEVDIPARPVTVDKFDVLAERREGDYIDLDVTVDCSSGTYIRSLARDL 188 Query: 193 XXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDES 252 HLT+LRRT VG F L+ A SLD LAE P LSL+LD+A FP +T +E+ Sbjct: 189 GEALQVGGHLTALRRTEVGPFALADALSLDALAESPRLSLSLDEALARCFPVLSVTEEEA 248 Query: 253 QSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 ++ G+ LEP G+ G++AA +G+ +AL++++G+R +V V RP+T+ Sbjct: 249 AALAMGKWLEPRGLKGVHAAVAPNGQAVALIKEKGKRLATVFVARPSTL 297 >tr|C6RAH4|C6RAH4_9CORY Tax_Id=553206 (truB)SubName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-;[Corynebacterium tuberculostearicum SK141] Length = 297 Score = 290 bits (743), Expect = 1e-76 Identities = 150/289 (51%), Positives = 200/289 (69%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G+V+VDKP MTSHDVVGR RR F T++VGHAGTLDPMATGVLV+G+ER TK L + A+ Sbjct: 9 GLVIVDKPAGMTSHDVVGRLRRCFHTKKVGHAGTLDPMATGVLVLGMERGTKFLAHMVAS 68 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 +KSY ATIRLG T+T+DAEGE S LTGDI Q P+AVSAIK+ Sbjct: 69 TKSYDATIRLGAATTTDDAEGEYSWGASAAAIDRAAIEAEIAKLTGDIMQKPAAVSAIKI 128 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXXX 192 +GRRA++L REGQ V++ ARPV +D+F+++ RR D ID+DV VDCSSGTYI Sbjct: 129 NGRRAHELVREGQEVDIPARPVTVDKFDVLAERREGDYIDLDVTVDCSSGTYIRSLARDL 188 Query: 193 XXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDES 252 HLT+LRRT+VG F L+ A SLD LA+ P LSL+LD+A FP +T +E+ Sbjct: 189 GEALKVGGHLTALRRTKVGPFALADALSLDALADSPRLSLSLDEALARCFPVLSVTEEEA 248 Query: 253 QSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 ++ G+ LEP G+ G++AA +G+ +AL++++G+R +V V RP+T+ Sbjct: 249 AALAMGKWLEPRGLKGVHAAVAPNGQAVALIKEKGKRLATVFVARPSTL 297 >tr|C2CNX5|C2CNX5_CORST Tax_Id=525268 (truB)SubName: Full=tRNA pseudouridine synthase B;[Corynebacterium striatum ATCC 6940] Length = 310 Score = 289 bits (740), Expect = 2e-76 Identities = 153/289 (52%), Positives = 195/289 (67%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G+VVVDKP MTSHDVVGR RRIF TR+VGHAGTLDPMATGVLV+G+ER TK L + A+ Sbjct: 22 GLVVVDKPQGMTSHDVVGRLRRIFHTRKVGHAGTLDPMATGVLVVGLERGTKFLAHMVAS 81 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 +KSYAATIRLG T T+DAEGE LTGDI Q P+AVSAIK+ Sbjct: 82 TKSYAATIRLGMATHTDDAEGERTWGEPASELDMEQVNKEVAALTGDIMQRPAAVSAIKI 141 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXXX 192 DG+RA++ REG+ VE+ ARPV + RF+++ R +D+DV VDCSSGTYI Sbjct: 142 DGKRAHERVREGEEVEIPARPVTVSRFDILAHRIEGKYLDLDVTVDCSSGTYIRSLARDL 201 Query: 193 XXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDES 252 HLT+L RT VG F L A +LDELA+ PALSL+LD+A +P +T DE+ Sbjct: 202 GEALGVGGHLTALCRTEVGPFTLGDARTLDELADAPALSLSLDEALARSYPVLQVTEDEA 261 Query: 253 QSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 +++ G+ LEP G+ G YAA D DG IAL++++G+R +V V RP+T+ Sbjct: 262 KALAMGKWLEPRGLKGTYAAVDPDGHSIALIKEKGKRLATVFVARPSTL 310 >tr|C8NU03|C8NU03_9CORY Tax_Id=585529 (truB)SubName: Full=tRNA pseudouridine synthase B; EC=4.2.1.70;[Corynebacterium genitalium ATCC 33030] Length = 306 Score = 283 bits (725), Expect = 1e-74 Identities = 147/289 (50%), Positives = 191/289 (66%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 GIVVVDKP MTSHDVV + RR FGTR+VGHAGTLDPMATGVLV GIER TK+L L A Sbjct: 18 GIVVVDKPAGMTSHDVVAQLRRFFGTRKVGHAGTLDPMATGVLVAGIERGTKLLAHLVAD 77 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 K YA TIRLG +T+T+DAEG+ LA LTG+I QVPS VSAIK+ Sbjct: 78 DKVYATTIRLGASTTTDDAEGDVLAETDASTLTDEQIMEQVTALTGEIMQVPSKVSAIKI 137 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXXX 192 DG+RA++L REG+ V + ARPV + F++ +RR +D+D V CSSGTYI Sbjct: 138 DGKRAHELVREGKEVNIPARPVTVFSFDVAGIRREGSFVDVDARVHCSSGTYIRSLARDM 197 Query: 193 XXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDES 252 HLT+LRR VG F L A +L+ L + PALSL+LD+A +P ++T DE Sbjct: 198 GETLGVGGHLTALRREAVGPFTLEHARTLERLEDSPALSLSLDEALTAAWPVLNVTADEF 257 Query: 253 QSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 ++ G+ LEP G+DG++AA DGR +AL+R++G+R ++ V RP+T+ Sbjct: 258 AALAMGKWLEPRGLDGVHAAVGPDGRAVALVREKGKRLSTLFVARPSTL 306 >tr|C0WKN3|C0WKN3_9CORY Tax_Id=525260 (truB)SubName: Full=tRNA pseudouridine synthase B;[Corynebacterium accolens ATCC 49725] Length = 297 Score = 283 bits (723), Expect = 2e-74 Identities = 148/289 (51%), Positives = 197/289 (68%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G+V+VDKP MTSHDVV R RR F T++VGHAGTLDPMATGVLV+GIER TK L + A+ Sbjct: 9 GLVIVDKPAGMTSHDVVSRLRRYFHTKKVGHAGTLDPMATGVLVLGIERGTKFLAHMVAS 68 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 +KSY+ATIRLG +T+T+DAEGE LTGDI Q P+AVSAIK+ Sbjct: 69 TKSYSATIRLGASTTTDDAEGEFRWGKPAAALHRSAIEAEVAALTGDIMQKPAAVSAIKI 128 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXXX 192 G+RA++L REG+ V++ ARPV I F++ DLR D +D+DV V+CSSGTYI Sbjct: 129 KGKRAHELVREGKEVDIPARPVTIHSFDIHDLRTEGDFVDLDVSVECSSGTYIRSLARDM 188 Query: 193 XXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDES 252 HLT+LRRT VG F L+ A LD+LAE P+LSL+LD+A FP +T DE+ Sbjct: 189 GEALGVGGHLTALRRTTVGPFALADAHMLDDLAENPSLSLSLDEALKRSFPVLPVTEDEA 248 Query: 253 QSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 ++ G+ LEP G+ G++AA +G+ IAL++++G+R +V V RP+T+ Sbjct: 249 AALAMGKWLEPRGLSGVHAAVAPNGQAIALIKEKGKRLATVFVARPSTL 297 >sp|C3PH13|TRUB_CORA7 Tax_Id=548476 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Corynebacterium aurimucosum] Length = 297 Score = 281 bits (720), Expect = 5e-74 Identities = 150/289 (51%), Positives = 191/289 (66%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G+VVVDKP MTSHDVVG+ RR F TR+VGHAGTLDPMATGVLV+GIER TK L + A+ Sbjct: 9 GLVVVDKPAGMTSHDVVGKLRRFFRTRKVGHAGTLDPMATGVLVVGIERGTKFLAHMVAS 68 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 +K+Y ATIRLG T T+DAEGE LTGDI Q P+AVSAIKV Sbjct: 69 TKAYDATIRLGTATHTDDAEGEATWGEPATAVEDSAIAREIAALTGDIMQRPAAVSAIKV 128 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXXX 192 DG+RA++ R G+ VEL ARPV + RF+++ RR + ID+DV V CSSGTYI Sbjct: 129 DGKRAHERVRAGEEVELPARPVTVSRFDILATRREGEFIDLDVSVACSSGTYIRSLARDL 188 Query: 193 XXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDES 252 HLT+LRRT VG F L A LD L + P LSL+LD+A +P ++T +E+ Sbjct: 189 GEALGVGGHLTALRRTEVGPFRLDDAHPLDALEDSPELSLSLDEALARSYPVLEVTDEEA 248 Query: 253 QSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 Q++ G+ LEP G+ G YAA D GR IAL++++G+R +V V RP+T+ Sbjct: 249 QALAMGKWLEPRGLKGTYAAVDPQGRSIALIQEKGKRLATVFVARPSTL 297 >sp|P60343|TRUB_CORDI Tax_Id=1717 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Corynebacterium diphtheriae] Length = 300 Score = 280 bits (716), Expect = 1e-73 Identities = 146/292 (50%), Positives = 194/292 (66%), Gaps = 3/292 (1%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G+V+VDKP MTSHDVV + RR F T++VGHAGTLDPMATGVLV+G+ER TK L + A+ Sbjct: 9 GLVIVDKPQGMTSHDVVSKIRRTFSTKKVGHAGTLDPMATGVLVLGLERGTKFLAHMVAS 68 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXX---LDLTGDIRQVPSAVSA 129 +KSY ATIRLG T+T+D EGE + S S G I Q P+AVSA Sbjct: 69 TKSYTATIRLGAATTTDDREGETITSASPDQLAGITETKISDAVKQFRGSIMQRPAAVSA 128 Query: 130 IKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXX 189 IK+DG+RA+Q REG+ VE+ ARPV I R++++++RR A IDIDVEVDCSSGTYI Sbjct: 129 IKIDGKRAHQRVREGEKVEIPARPVTISRYDILEIRRDAAFIDIDVEVDCSSGTYIRSLA 188 Query: 190 XXXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTV 249 HLT+LRRT+VG F L A +L++L E P +SLTLDQA +P ++ Sbjct: 189 RDLGEELGVGGHLTALRRTQVGPFTLDNAVTLEKLEENPHVSLTLDQALAASYPVLSVSE 248 Query: 250 DESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 E+ + G+ L P G+ GI+AA D GR IAL++++G+R ++ V RP+T+ Sbjct: 249 KEASDLAMGKWLTPRGLKGIHAAVDPHGRAIALVKEQGKRLATIFVARPSTL 300 >tr|C7MQV8|C7MQV8_SACVD Tax_Id=471857 SubName: Full=tRNA pseudouridine synthase B;[Saccharomonospora viridis] Length = 295 Score = 277 bits (709), Expect = 1e-72 Identities = 146/287 (50%), Positives = 185/287 (64%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G+++VDKPG MTSHDVV + RR TR+VGHAGTLDPMATGVLV+G+ RATK+LG L Sbjct: 9 GLLIVDKPGGMTSHDVVAKVRRFLRTRKVGHAGTLDPMATGVLVLGVGRATKLLGHLALD 68 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 K+Y ATI LG T+T+DAEGE +S LTGDI Q PSAVSA+KV Sbjct: 69 RKAYLATIVLGAATTTDDAEGEVTSSADASGVRDSDIAAEIAALTGDILQKPSAVSAVKV 128 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXXX 192 DG+RAY R G+ V+L ARPV + RF+++ RR +++DV VDCSSGTY+ Sbjct: 129 DGKRAYARVRAGEEVDLPARPVTVHRFDVLATRREGQRVELDVMVDCSSGTYVRALARDL 188 Query: 193 XXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDES 252 HL +LRRT VG F L+QA +LDE+ P LSL+L +A FPR D+ + Sbjct: 189 GSALGVGGHLAALRRTSVGPFTLAQARTLDEVERAPGLSLSLSEAVAAAFPRVDVAASAA 248 Query: 253 QSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPA 299 ++ +G+ + AGIDG Y DGRV+AL RD GR KSVVV+ PA Sbjct: 249 HAIRHGQRIPAAGIDGTYGVFGPDGRVLALARDSGRVAKSVVVLDPA 295 >sp|A4QEY6|TRUB_CORGB Tax_Id=340322 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Corynebacterium glutamicum] Length = 297 Score = 276 bits (707), Expect = 2e-72 Identities = 141/294 (47%), Positives = 190/294 (64%) Query: 8 PGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILG 67 P PG+V+VDKP MTSHDVV + RR F TR+VGHAGTLDPMATGVLV+GIER T+ L Sbjct: 4 PAPKPGLVIVDKPAGMTSHDVVSKLRRAFSTRKVGHAGTLDPMATGVLVVGIERGTRFLA 63 Query: 68 LLTATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAV 127 + A++K+Y ATIRLG TST+DAEGE +++ +LTGDI Q P+ V Sbjct: 64 HMVASTKAYDATIRLGAATSTDDAEGEVISTTDASGLDHRAILAEIANLTGDIMQKPTKV 123 Query: 128 SAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXX 187 SAIK+DG+RA++ R+G+ V++ ARPV + F+++D R ++ D+DV V CSSGTYI Sbjct: 124 SAIKIDGKRAHERVRDGEEVDIPARPVTVSVFDVLDYRVDSEFYDLDVRVHCSSGTYIRA 183 Query: 188 XXXXXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDL 247 HLT+LRRT VG F L+ A L +L E P LSL LDQA +P D+ Sbjct: 184 LARDLGNALQVGGHLTALRRTEVGPFTLNDATPLSKLQENPELSLNLDQALTRSYPVLDI 243 Query: 248 TVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 T DE + G+ LEP G+ G++AA G+ +AL+ ++G+R +V V P T+ Sbjct: 244 TEDEGVDLSMGKWLEPRGLKGVHAAVTPSGKAVALIEEKGKRLATVFVAHPNTL 297 >tr|A4FM27|A4FM27_SACEN Tax_Id=405948 SubName: Full=Putative uncharacterized protein;[Saccharopolyspora erythraea] Length = 536 Score = 276 bits (707), Expect = 2e-72 Identities = 142/274 (51%), Positives = 186/274 (67%) Query: 16 VVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTATSKS 75 +VDKP MTSHDVV R RRI GTR+VGHAGTLDPMATGVLV+G+ERATK+LG L +K+ Sbjct: 1 MVDKPAGMTSHDVVARVRRIMGTRKVGHAGTLDPMATGVLVLGLERATKLLGHLAMDTKA 60 Query: 76 YAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKVDGR 135 Y ATIRLG T+T+DAEGE L+ +LTG+++QVPS+VSA+KV+GR Sbjct: 61 YLATIRLGAATTTDDAEGEVLSEADASEVAEDAVRAGVAELTGELQQVPSSVSAVKVNGR 120 Query: 136 RAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXXXXXX 195 RAY++AR G+ VELAARPV + RF+++ LRR ++DV V+CSSGTY+ Sbjct: 121 RAYEIARSGEQVELAARPVTVSRFDVLALRRAEAATELDVLVECSSGTYVRALARDLGAG 180 Query: 196 XXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDESQSV 255 HL +LRRTRVG F L+ A +LD L E P LS+ LD+A F R D+ ++++ Sbjct: 181 LGVGGHLAALRRTRVGPFGLATARTLDALEEEPGLSMDLDRAVEAAFRRTDVDTAAARAL 240 Query: 256 GNGRPLEPAGIDGIYAASDADGRVIALLRDEGRR 289 +G+ + AG+ G Y D DGR IAL+RD+G R Sbjct: 241 AHGQAVPAAGLKGTYGVFDPDGRAIALVRDQGPR 274 >sp|Q8NP46|TRUB_CORGL Tax_Id=1718 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Corynebacterium glutamicum] Length = 297 Score = 275 bits (703), Expect = 5e-72 Identities = 140/294 (47%), Positives = 189/294 (64%) Query: 8 PGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILG 67 P PG+V+VDKP MTSHDVV + RR F TR+VGHAGTLDPMATGVLV+GIER T+ L Sbjct: 4 PAPKPGLVIVDKPAGMTSHDVVSKLRRAFSTRKVGHAGTLDPMATGVLVVGIERGTRFLA 63 Query: 68 LLTATSKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAV 127 + A++K+Y ATIRLG TST+DAEGE +++ ++LTGDI Q P+ V Sbjct: 64 HMVASTKAYDATIRLGAATSTDDAEGEVISTTDASGLDHSTILAEIVNLTGDIMQKPTKV 123 Query: 128 SAIKVDGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXX 187 SAIK+DG+RA++ R+G+ V++ ARPV + F+++D + D+DV V CSSGTYI Sbjct: 124 SAIKIDGKRAHERVRDGEEVDIPARPVTVSVFDVLDYHVDGEFYDLDVRVHCSSGTYIRA 183 Query: 188 XXXXXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDL 247 HLT+LRRT VG F L+ A L +L E P LSL LDQA +P D+ Sbjct: 184 LARDLGNALQVGGHLTALRRTEVGPFTLNDATPLSKLQENPELSLNLDQALTRSYPVLDI 243 Query: 248 TVDESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 T DE + G+ LEP G+ G++AA G+ +AL+ ++G+R +V V P T+ Sbjct: 244 TEDEGVDLSMGKWLEPRGLKGVHAAVTPSGKAVALIEEKGKRLATVFVAHPNTL 297 >tr|C0XSF2|C0XSF2_9CORY Tax_Id=525263 (truB)SubName: Full=tRNA pseudouridine synthase B;[Corynebacterium lipophiloflavum DSM 44291] Length = 300 Score = 273 bits (698), Expect = 2e-71 Identities = 146/289 (50%), Positives = 188/289 (65%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 GIVVVDKP MTSHDVV R RR F TR+VGHAGTLDPMATGVLV GIER TK+L L A Sbjct: 12 GIVVVDKPAGMTSHDVVTRLRRFFRTRKVGHAGTLDPMATGVLVAGIERGTKLLAHLVAE 71 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 K YAATIRLG TT+T+DA+G+ + +LTG+I QVPS+VSAIK+ Sbjct: 72 DKVYAATIRLGATTTTDDADGDVVMCADASQIGDADIAAGIAELTGEIMQVPSSVSAIKI 131 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXXX 192 GRRA++L R G+TV++ R V + RF + +RR A VID+DV V CS GTYI Sbjct: 132 GGRRAHELVRSGETVDIPPREVTVFRFHALAVRRHASVIDVDVRVHCSKGTYIRSLARDL 191 Query: 193 XXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDES 252 HLT+LRR VG F L A SL +L P LSL+LD+A +P D+T E Sbjct: 192 GAALGVGGHLTALRREAVGAFTLDDARSLTQLETAPTLSLSLDEALSRAWPVIDVTAAEY 251 Query: 253 QSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 +++ G+ LEP G+ ++AA DGR +AL++++G+R +V V RP+T+ Sbjct: 252 EALAMGKWLEPRGVRVVHAAVGPDGRAVALVKEQGKRLSTVFVARPSTL 300 >tr|A8M755|A8M755_SALAI Tax_Id=391037 SubName: Full=tRNA pseudouridine synthase B;[Salinispora arenicola] Length = 305 Score = 268 bits (686), Expect = 4e-70 Identities = 144/290 (49%), Positives = 189/290 (65%), Gaps = 3/290 (1%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G++VVDKPG MTSHDVV R RR+ TRRVGH GTLDPMATGVLV+G+ RAT++L + Sbjct: 16 GLIVVDKPGGMTSHDVVARVRRLARTRRVGHGGTLDPMATGVLVVGVGRATRLLTYVIGA 75 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 KSY ATIRLGQ T T+DAEG+ +AS TGD+ QVPSAVSAIK+ Sbjct: 76 GKSYTATIRLGQATVTDDAEGDVIASTPAGRVTEDAVRAALAAQTGDVDQVPSAVSAIKI 135 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRRG-ADVIDIDVEVDCSSGTYIXXXXXX 191 DG+RAY+ REG+ V+L AR V I R E+ LRR DV+D+DV+V CSSGTY+ Sbjct: 136 DGQRAYRRVREGKDVDLPARRVTISRLEVRALRRDEPDVVDVDVDVTCSSGTYVRAVARD 195 Query: 192 XXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAER--PALSLTLDQACLLMFPRRDLTV 249 HLT+LRRT VG F L++AA+LD+L R ++L+L A FPRR+ T Sbjct: 196 AGLALGVGGHLTALRRTAVGGFTLAEAATLDDLERRAPEVVTLSLPAAADRSFPRREATA 255 Query: 250 DESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPA 299 +E + + +G PL+P GIDG YA G ++A++ + R ++ +V+ PA Sbjct: 256 EEERVLSHGGPLDPVGIDGPYAVFGPAGGLVAIVSERAGRARAEIVLAPA 305 >sp|Q8FPB3|TRUB_COREF Tax_Id=152794 (truB)RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-; AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase; AltName: Full=tRNA-uridine isomerase; AltName: Full=tRNA pseudouridylate synthase;[Corynebacterium efficiens] Length = 297 Score = 265 bits (678), Expect = 4e-69 Identities = 137/289 (47%), Positives = 188/289 (65%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G+VVVDKP MTSHDVV + RR F TR+VGHAGTLDPMATGVLV+GIER T+ L L AT Sbjct: 9 GLVVVDKPAGMTSHDVVSKLRRAFSTRKVGHAGTLDPMATGVLVVGIERGTRFLAHLVAT 68 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 +K+Y ATIRLG +T+T+D EG+ + S LTG+I Q P++VSAIK+ Sbjct: 69 TKAYDATIRLGASTTTDDREGDVVFSADASTLDDEQITTAVTSLTGEIMQKPASVSAIKI 128 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXXX 192 DG+RA++ R+G+ V++ ARPV + F++++ RR +D+DV V CSSGTYI Sbjct: 129 DGKRAHERVRDGEVVDIPARPVTVSVFDVLEQRREGGFVDLDVRVHCSSGTYIRSLARDL 188 Query: 193 XXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDES 252 HLT+LRRT VG F L A L +L + LSL+LD+A +P ++T E Sbjct: 189 GAALGVGGHLTALRRTEVGPFTLEDAIPLADLQDNARLSLSLDEALARSYPVLEITEAEG 248 Query: 253 QSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 +++ G+ LEP G+ G++AA GR IAL+ ++G+R +V V RP T+ Sbjct: 249 EALSMGKWLEPRGLKGVHAAVTPSGRSIALVEEKGKRLATVFVARPNTL 297 >tr|C8NPI1|C8NPI1_COREF Tax_Id=196164 (truB)SubName: Full=tRNA pseudouridine synthase B; EC=4.2.1.70;[Corynebacterium efficiens YS-314] Length = 297 Score = 265 bits (678), Expect = 4e-69 Identities = 137/289 (47%), Positives = 188/289 (65%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G+VVVDKP MTSHDVV + RR F TR+VGHAGTLDPMATGVLV+GIER T+ L L AT Sbjct: 9 GLVVVDKPAGMTSHDVVSKLRRAFSTRKVGHAGTLDPMATGVLVVGIERGTRFLAHLVAT 68 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 +K+Y ATIRLG +T+T+D EG+ + S LTG+I Q P++VSAIK+ Sbjct: 69 TKAYDATIRLGASTTTDDREGDVVFSADASTLDDEQITTAVTSLTGEIMQKPASVSAIKI 128 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXXX 192 DG+RA++ R+G+ V++ ARPV + F++++ RR +D+DV V CSSGTYI Sbjct: 129 DGKRAHERVRDGEVVDIPARPVTVSVFDVLEQRREGGFVDLDVRVHCSSGTYIRSLARDL 188 Query: 193 XXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDES 252 HLT+LRRT VG F L A L +L + LSL+LD+A +P ++T E Sbjct: 189 GAALGVGGHLTALRRTEVGPFTLEDAIPLADLQDNARLSLSLDEALARSYPVLEITEAEG 248 Query: 253 QSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 +++ G+ LEP G+ G++AA GR IAL+ ++G+R +V V RP T+ Sbjct: 249 EALSMGKWLEPRGLKGVHAAVTPSGRSIALVEEKGKRLATVFVARPNTL 297 >tr|C2GKZ3|C2GKZ3_9CORY Tax_Id=548478 (truB)SubName: Full=tRNA pseudouridine synthase B;[Corynebacterium glucuronolyticum ATCC 51866] Length = 295 Score = 264 bits (674), Expect = 1e-68 Identities = 143/289 (49%), Positives = 187/289 (64%), Gaps = 4/289 (1%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G+V+VDKP MTSH VVG RR FGT++VGHAGTLDPMATG+LV+G+ER TK L L A Sbjct: 9 GLVLVDKPRGMTSHSVVGAIRRYFGTKKVGHAGTLDPMATGLLVVGVERGTKFLAHLVAE 68 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 +K+Y ATIRLGQ T+TEDA+GE V LTGDI Q PS+VSAIK+ Sbjct: 69 TKTYEATIRLGQETTTEDADGEITREVDASHVTDADIAREVEKLTGDIMQRPSSVSAIKI 128 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXXX 192 +G+RA+QL REG+ VE+ RPV I FE+ G + ++ V V CSSGTYI Sbjct: 129 NGKRAHQLVREGEKVEIPPRPVTIHSFEV----TGREGTNLRVCVHCSSGTYIRALARDL 184 Query: 193 XXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDES 252 HL +LRR VG FD+S++ L + P LSLTLD+A +P +T DE+ Sbjct: 185 GHGLGVGAHLIALRRLNVGPFDISRSHPLAHFEDHPELSLTLDEALQACYPTLHVTDDEA 244 Query: 253 QSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 Q++ G+ L P G+ GI+AA ADGR IAL++++G+R +V V RP+T+ Sbjct: 245 QALSEGKWLSPRGLQGIHAAVAADGRSIALIKEQGKRLSTVFVARPSTL 293 >tr|C0VVH0|C0VVH0_9CORY Tax_Id=548477 (truB)SubName: Full=tRNA pseudouridine synthase B;[Corynebacterium glucuronolyticum ATCC 51867] Length = 295 Score = 264 bits (674), Expect = 1e-68 Identities = 141/289 (48%), Positives = 186/289 (64%), Gaps = 4/289 (1%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G+V+VDKP MTSH VVG RR FGT++VGHAGTLDPMATG+LV+G+ER TK L L A Sbjct: 9 GLVLVDKPRGMTSHSVVGAIRRYFGTKKVGHAGTLDPMATGLLVVGVERGTKFLAHLVAE 68 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 +K+Y ATIRLGQ T+TEDA+GE V LTGDI Q PS+VSAIK+ Sbjct: 69 TKTYEATIRLGQETTTEDADGEITREVDASHVTDADIAREVEKLTGDIMQRPSSVSAIKI 128 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXXX 192 +G+RA+QL REG+ VE+ RPV I FE+ G + D+ V V CSSGTYI Sbjct: 129 NGKRAHQLVREGEKVEIPPRPVTIHSFEV----TGREGTDLRVRVHCSSGTYIRALARDL 184 Query: 193 XXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDES 252 HL +LRR VG FD+S++ L + P LSLTLD+A +P +T DE+ Sbjct: 185 GHGLGVGAHLIALRRLNVGPFDISRSHPLAHFEDHPELSLTLDEALQACYPTLHVTDDEA 244 Query: 253 QSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPATM 301 Q++ G+ L P G+ G+++A DGR IAL++++G+R +V V RP+T+ Sbjct: 245 QALSEGKWLSPRGLQGVHSAVAPDGRSIALIKEQGKRLSTVFVARPSTL 293 >tr|B8HG60|B8HG60_ARTCA Tax_Id=452863 SubName: Full=tRNA pseudouridine synthase B;[Arthrobacter chlorophenolicus] Length = 322 Score = 263 bits (672), Expect = 2e-68 Identities = 149/297 (50%), Positives = 187/297 (62%), Gaps = 12/297 (4%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G+V+VDKP TSHDVVGR RRI GTR+VGHAGTLDPMATGVLV+GI +AT++L + T Sbjct: 15 GLVIVDKPQGWTSHDVVGRMRRIAGTRKVGHAGTLDPMATGVLVVGINKATRLLTYIVGT 74 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 SK+Y ATIRLGQ+T T+DAEG+ +AS LTG I QVPS+VSAIKV Sbjct: 75 SKTYTATIRLGQSTVTDDAEGDVIASAGTSAVAEQAIHDGVAALTGGIEQVPSSVSAIKV 134 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRR--GADVIDIDVEVDCSSGTYIXXXXX 190 +G RAY R G+ V+LAARPV I RFE+ +RR GADVIDIDV V+CSSGTYI Sbjct: 135 NGERAYARVRSGEDVKLAARPVTIHRFEVHAIRRDAGADVIDIDVTVECSSGTYIRALAR 194 Query: 191 XXXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVD 250 HLT+LRRT VG + L QA +L++LAE + L + QA + P R+L+ + Sbjct: 195 DLGNGLGVGGHLTALRRTHVGPYSLEQARTLEQLAEELDV-LEMSQAARALMPNRELSAE 253 Query: 251 ESQSVGNGRPLEPAGIDGIYAASDA---------DGRVIALLRDEGRRTKSVVVIRP 298 E+ + GR + G A+ A DG ++ALL D G K V+V P Sbjct: 254 ETTEISYGRRIAAGAAPGSPGAATADHPAAAFAPDGSLVALLADSGNYAKPVLVFAP 310 >tr|C4RD76|C4RD76_9ACTO Tax_Id=219305 SubName: Full=tRNA pseudouridine synthase B;[Micromonospora sp. ATCC 39149] Length = 300 Score = 262 bits (670), Expect = 3e-68 Identities = 140/290 (48%), Positives = 188/290 (64%), Gaps = 3/290 (1%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G++VVDKPG MTSHDVV R RR+ TRRVGH GTLDPMATGVLVIG+ RAT++L + Sbjct: 11 GLIVVDKPGGMTSHDVVARIRRLARTRRVGHGGTLDPMATGVLVIGVGRATRLLTYVIGA 70 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 KSY AT+R GQ T T+DAEG+ +++ G+I QVPSAVSAIK+ Sbjct: 71 GKSYTATVRFGQATVTDDAEGDVISATPADAVADEAIRSAFAAFAGEIDQVPSAVSAIKI 130 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGA-DVIDIDVEVDCSSGTYIXXXXXX 191 +G RAY+ REG++V+L AR V I R +++ +RR ++D+D++V CSSGTYI Sbjct: 131 NGERAYKRVREGESVDLPARRVTISRLDVLAVRRETPGLVDVDIDVTCSSGTYIRALARD 190 Query: 192 XXXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAER--PALSLTLDQACLLMFPRRDLTV 249 HLT+LRRT VG F L +AA+LDEL R ++L LD A FPRR+ T Sbjct: 191 AGLALSVGGHLTALRRTAVGGFALGEAATLDELERRAPEVVNLPLDVAADRFFPRREATA 250 Query: 250 DESQSVGNGRPLEPAGIDGIYAASDADGRVIALLRDEGRRTKSVVVIRPA 299 DE++ + +G PL+PAGI G YA DG +IA++ + R ++ +V+ PA Sbjct: 251 DEAKVLSHGGPLDPAGIAGPYAVFGPDGALIAIVSERDGRARAEIVLAPA 300 >tr|C4EJW6|C4EJW6_STRRS Tax_Id=479432 SubName: Full=tRNA pseudouridine synthase B; EC=4.2.1.70;[Streptosporangium roseum DSM 43021] Length = 299 Score = 259 bits (661), Expect = 4e-67 Identities = 141/284 (49%), Positives = 184/284 (64%), Gaps = 2/284 (0%) Query: 13 GIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAT 72 G+V+VDKP TSHDVVG+ R I GTRRVGHAGTLDPMATGVLV+G+E+AT++LG L T Sbjct: 14 GLVIVDKPAEWTSHDVVGKLRGIAGTRRVGHAGTLDPMATGVLVVGVEKATRLLGHLALT 73 Query: 73 SKSYAATIRLGQTTSTEDAEGEPLASVSXXXXXXXXXXXXXLDLTGDIRQVPSAVSAIKV 132 K Y ATIRLGQ+T+T+DAEGE +++ S LTG I QVP VSAIKV Sbjct: 74 EKGYDATIRLGQSTNTDDAEGEIISASSAAGVAEEAIRKGVAALTGQIMQVPPQVSAIKV 133 Query: 133 DGRRAYQLAREGQTVELAARPVRIDRFELMDLRRGADVIDIDVEVDCSSGTYIXXXXXXX 192 +G RAY+ AR G+ VEL ARPV + FE+ +RR D+ID+D V CSSGTYI Sbjct: 134 NGERAYKRARAGEEVELKARPVTVSGFEITGIRRDGDLIDVDASVTCSSGTYIRALARDL 193 Query: 193 XXXXXXXXHLTSLRRTRVGHFDLSQAASLDELAERPALSLTLDQACLLMFPRRDLTVDES 252 HLT LRRTRVG +DLS A ++++L+ + L + +A FPRRD+T +E+ Sbjct: 194 GADLGTGGHLTYLRRTRVGPYDLSMARTIEQLSAECTI-LPMAEAVAAAFPRRDVTAEEA 252 Query: 253 QSVGNGRPLEPAGI-DGIYAASDADGRVIALLRDEGRRTKSVVV 295 +V +G L G+ G DG ++AL+ + G+ TKS+ V Sbjct: 253 GAVAHGGRLPSLGLGKGPIGVFGPDGTLLALVEEHGKITKSLAV 296 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.319 0.136 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 1,903,343,160 Number of extensions: 71063750 Number of successful extensions: 157209 Number of sequences better than 10.0: 2311 Number of HSP's gapped: 153816 Number of HSP's successfully gapped: 2334 Length of query: 301 Length of database: 3,846,993,858 Length adjustment: 136 Effective length of query: 165 Effective length of database: 2,313,566,250 Effective search space: 381738431250 Effective search space used: 381738431250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 80 (35.4 bits)