BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_1960 (361 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HKY9|B2HKY9_MYCMM Tax_Id=216594 (hsdS)SubName: Full=Type I ... 718 0.0 tr|Q7TXY1|Q7TXY1_MYCBO Tax_Id=1765 (hsdS)SubName: Full=POSSIBLE ... 420 e-115 tr|O33303|O33303_MYCTU Tax_Id=1773 (hsdS)SubName: Full=POSSIBLE ... 420 e-115 tr|C6DLE6|C6DLE6_MYCTK Tax_Id=478434 SubName: Full=Type I restri... 420 e-115 tr|C1AFM3|C1AFM3_MYCBT Tax_Id=561275 (hsdS)SubName: Full=Putativ... 420 e-115 tr|A5U6B4|A5U6B4_MYCTA Tax_Id=419947 (hsdS)SubName: Full=Type I ... 420 e-115 tr|A1KMA2|A1KMA2_MYCBP Tax_Id=410289 (hsdS)SubName: Full=Possibl... 420 e-115 tr|A5WR12|A5WR12_MYCTF Tax_Id=336982 SubName: Full=Type I restri... 420 e-115 tr|A2VL97|A2VL97_MYCTU Tax_Id=348776 SubName: Full=Type I restri... 420 e-115 tr|A4KK35|A4KK35_MYCTU Tax_Id=395095 SubName: Full=Type I restri... 419 e-115 tr|Q1IWS4|Q1IWS4_DEIGD Tax_Id=319795 SubName: Full=Restriction m... 164 2e-38 tr|Q60AL4|Q60AL4_METCA Tax_Id=414 SubName: Full=Type I restricti... 140 2e-31 tr|C4ZIB4|C4ZIB4_THASP Tax_Id=85643 SubName: Full=Restriction mo... 114 2e-23 tr|C8NDJ8|C8NDJ8_9GAMM Tax_Id=638300 SubName: Full=Restriction m... 107 2e-21 tr|A8L1U1|A8L1U1_FRASN Tax_Id=298653 SubName: Full=Restriction m... 105 7e-21 tr|Q9P9X9|Q9P9X9_XYLFA Tax_Id=2371 SubName: Full=Type I restrict... 98 2e-18 tr|Q12WN6|Q12WN6_METBU Tax_Id=259564 SubName: Full=Restriction m... 94 2e-17 tr|Q4FTC7|Q4FTC7_PSYA2 Tax_Id=259536 SubName: Full=Probable type... 94 3e-17 tr|C2MGH1|C2MGH1_BACCE Tax_Id=526973 SubName: Full=Type I restri... 93 4e-17 tr|Q31IU4|Q31IU4_THICR Tax_Id=317025 SubName: Full=Type I restri... 92 8e-17 tr|C1SLU6|C1SLU6_9BACT Tax_Id=522772 SubName: Full=Restriction e... 92 1e-16 tr|C5DAW6|C5DAW6_GEOSW Tax_Id=471223 SubName: Full=Restriction m... 90 5e-16 tr|A0JTL4|A0JTL4_ARTS2 Tax_Id=290399 SubName: Full=Restriction m... 89 8e-16 tr|B5Y625|B5Y625_COPPD Tax_Id=309798 SubName: Full=Type I restri... 87 2e-15 tr|C4XFR2|C4XFR2_MYCFE Tax_Id=496833 SubName: Full=Putative unch... 87 3e-15 tr|C6BZF1|C6BZF1_DESAD Tax_Id=526222 SubName: Full=Restriction m... 85 2e-14 tr|Q67N49|Q67N49_SYMTH Tax_Id=2734 SubName: Full=Type I restrict... 82 8e-14 tr|C1PH86|C1PH86_STAAU Tax_Id=1280 SubName: Full=Putative unchar... 82 8e-14 tr|C7NP00|C7NP00_HALUD Tax_Id=519442 SubName: Full=Restriction m... 82 1e-13 tr|Q879W9|Q879W9_XYLFT Tax_Id=183190 (hsdS)SubName: Full=Type I ... 80 3e-13 tr|Q6YRQ7|Q6YRQ7_SYNY3 Tax_Id=1148 SubName: Full=Type I site-spe... 80 3e-13 tr|Q3ARJ1|Q3ARJ1_CHLCH Tax_Id=340177 SubName: Full=Restriction e... 80 3e-13 tr|B2IAD5|B2IAD5_XYLF2 Tax_Id=405441 SubName: Full=Restriction m... 80 3e-13 tr|A6B4C6|A6B4C6_VIBPA Tax_Id=419109 SubName: Full=Hypothetical ... 80 5e-13 tr|A4VJL0|A4VJL0_PSEU5 Tax_Id=379731 (hsdS)SubName: Full=Type I ... 79 9e-13 tr|Q9F702|Q9F702_STRTR Tax_Id=1308 SubName: Full=Putative HsdS;[... 79 1e-12 tr|B4VXC6|B4VXC6_9CYAN Tax_Id=118168 SubName: Full=Type I restri... 78 2e-12 tr|A3WLG9|A3WLG9_9GAMM Tax_Id=314276 SubName: Full=Type I restri... 78 2e-12 tr|Q888D9|Q888D9_PSESM Tax_Id=323 SubName: Full=Type I restricti... 77 3e-12 tr|A9A7U6|A9A7U6_METM6 Tax_Id=444158 SubName: Full=Restriction m... 77 4e-12 tr|B4SN97|B4SN97_STRM5 Tax_Id=391008 SubName: Full=Restriction m... 76 6e-12 tr|A6L6I2|A6L6I2_BACV8 Tax_Id=435590 SubName: Full=Type I restri... 76 7e-12 tr|Q2BNA9|Q2BNA9_9GAMM Tax_Id=207954 SubName: Full=Putative type... 76 7e-12 tr|Q11PS5|Q11PS5_CYTH3 Tax_Id=269798 (hsdS)SubName: Full=Type I ... 75 1e-11 tr|Q3SFH5|Q3SFH5_THIDA Tax_Id=292415 SubName: Full=Putative rest... 75 2e-11 tr|A6GSS5|A6GSS5_9BURK Tax_Id=391597 SubName: Full=Putative unch... 75 2e-11 tr|B3ELH4|B3ELH4_CHLPB Tax_Id=331678 SubName: Full=Restriction m... 74 2e-11 tr|Q11PS6|Q11PS6_CYTH3 Tax_Id=269798 (hsdS)SubName: Full=Type I ... 74 3e-11 tr|C6BT24|C6BT24_DESAD Tax_Id=526222 SubName: Full=Restriction m... 73 5e-11 tr|Q1QC71|Q1QC71_PSYCK Tax_Id=335284 SubName: Full=Restriction m... 73 6e-11 >tr|B2HKY9|B2HKY9_MYCMM Tax_Id=216594 (hsdS)SubName: Full=Type I restriction/modification system specificity determinant HsdS (S protein);[Mycobacterium marinum] Length = 361 Score = 718 bits (1853), Expect = 0.0 Identities = 360/361 (99%), Positives = 361/361 (100%) Query: 1 VRLGEHLEFRSGSCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRY 60 +RLGEHLEFRSGSCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRY Sbjct: 1 MRLGEHLEFRSGSCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRY 60 Query: 61 CDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQ 120 CDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQ Sbjct: 61 CDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQ 120 Query: 121 APERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGSVDARVALSGLARRSTKLVNPAD 180 APERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGSVDARVALSGLARRSTKLVNPAD Sbjct: 121 APERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGSVDARVALSGLARRSTKLVNPAD 180 Query: 181 FDDVVAHFSLPAFDAGAHARPVAGASVKSGKFHLSEPCVLFAKLNPRVPRIWNVVRLPPQ 240 FDDVVAHFSLPAFDAGAHARPVAGASVKSGKFHLSEPCVLFAKLNPRVPRIWNVVRLPPQ Sbjct: 181 FDDVVAHFSLPAFDAGAHARPVAGASVKSGKFHLSEPCVLFAKLNPRVPRIWNVVRLPPQ 240 Query: 241 MALASCEFVVLSPLGVDTSVLWSALRQPEVSTSLAQLVAGTSGSHQRIGPKDLLDLQVPD 300 MALASCEFVVLSPLGVDTSVLWSALRQPEVSTSLAQLVAGTSGSHQRIGPKDLLDLQVPD Sbjct: 241 MALASCEFVVLSPLGVDTSVLWSALRQPEVSTSLAQLVAGTSGSHQRIGPKDLLDLQVPD 300 Query: 301 VRRLGAAQSATITDLGALCHARRGQCAQLAALRDALLPGLVTGEVAVSGGELLLASPLGT 360 VRRLGAAQSATITDLGALCHARRGQCAQLAALRDALLPGLVTGEVAVSGGELLLASPLGT Sbjct: 301 VRRLGAAQSATITDLGALCHARRGQCAQLAALRDALLPGLVTGEVAVSGGELLLASPLGT 360 Query: 361 P 361 P Sbjct: 361 P 361 >tr|Q7TXY1|Q7TXY1_MYCBO Tax_Id=1765 (hsdS)SubName: Full=POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM SPECIFICITY DETERMINANT HSDS (S PROTEIN);[Mycobacterium bovis] Length = 364 Score = 420 bits (1079), Expect = e-115 Identities = 216/347 (62%), Positives = 254/347 (73%), Gaps = 4/347 (1%) Query: 1 VRLGEHLEFR----SGSCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCG 56 VRLG+HL+F SG SP GR PVYGANG IG++A+HN GPLIVVGRVGSYCG Sbjct: 10 VRLGDHLDFSNGHTSGHTSPASEPGGRYPVYGANGVIGYSAQHNARGPLIVVGRVGSYCG 69 Query: 57 SVRYCDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSV 116 S+RYCDSDVWVTDNA CRA P ETRYWYYAL LN +RAGSGQPLL+Q LR VSV Sbjct: 70 SLRYCDSDVWVTDNALACRAKKPEETRYWYYALLGFGLNRYRAGSGQPLLSQGVLRNVSV 129 Query: 117 HVAQAPERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGSVDARVALSGLARRSTKLV 176 AP+R RI E+LGA DDKIA N+RVIEAAEALM+A+VG + A V LS LA RST + Sbjct: 130 SAVAAPDRPRIGEILGAFDDKIAANDRVIEAAEALMLAIVGRLSAYVPLSSLASRSTACL 189 Query: 177 NPADFDDVVAHFSLPAFDAGAHARPVAGASVKSGKFHLSEPCVLFAKLNPRVPRIWNVVR 236 + FD VAH+S AFD GA V G +++S K +S+PCVLF KLNPR+PRIWN+ Sbjct: 190 DAQHFDSTVAHYSFAAFDGGAQPSRVGGRTIRSAKLVVSQPCVLFPKLNPRIPRIWNITS 249 Query: 237 LPPQMALASCEFVVLSPLGVDTSVLWSALRQPEVSTSLAQLVAGTSGSHQRIGPKDLLDL 296 LP +MALAS EFVVL P+GVDTS LW+ALRQP+V L QLV G +GS QRI P LL + Sbjct: 250 LPSEMALASTEFVVLRPVGVDTSALWAALRQPDVLAELRQLVGGMTGSRQRIQPTQLLRV 309 Query: 297 QVPDVRRLGAAQSATITDLGALCHARRGQCAQLAALRDALLPGLVTG 343 V DVRRL +A I +LGALC+ RR + A+LA+ RDALLP L++G Sbjct: 310 WVRDVRRLTPGHAAAIANLGALCNERRIESARLASCRDALLPLLMSG 356 >tr|O33303|O33303_MYCTU Tax_Id=1773 (hsdS)SubName: Full=POSSIBLE TYPE I RESTRICTION/MODIFICATION SYSTEM SPECIFICITY DETERMINANT HSDS (S PROTEIN); SubName: Full=Type I restriction system specificity protein;[Mycobacterium tuberculosis] Length = 364 Score = 420 bits (1079), Expect = e-115 Identities = 216/347 (62%), Positives = 254/347 (73%), Gaps = 4/347 (1%) Query: 1 VRLGEHLEFR----SGSCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCG 56 VRLG+HL+F SG SP GR PVYGANG IG++A+HN GPLIVVGRVGSYCG Sbjct: 10 VRLGDHLDFSNGHTSGHTSPASEPGGRYPVYGANGVIGYSAQHNARGPLIVVGRVGSYCG 69 Query: 57 SVRYCDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSV 116 S+RYCDSDVWVTDNA CRA P ETRYWYYAL LN +RAGSGQPLL+Q LR VSV Sbjct: 70 SLRYCDSDVWVTDNALACRAKKPEETRYWYYALLGFGLNRYRAGSGQPLLSQGVLRNVSV 129 Query: 117 HVAQAPERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGSVDARVALSGLARRSTKLV 176 AP+R RI E+LGA DDKIA N+RVIEAAEALM+A+VG + A V LS LA RST + Sbjct: 130 SAVAAPDRPRIGEILGAFDDKIAANDRVIEAAEALMLAIVGRLSAYVPLSSLASRSTACL 189 Query: 177 NPADFDDVVAHFSLPAFDAGAHARPVAGASVKSGKFHLSEPCVLFAKLNPRVPRIWNVVR 236 + FD VAH+S AFD GA V G +++S K +S+PCVLF KLNPR+PRIWN+ Sbjct: 190 DAQHFDSTVAHYSFAAFDGGAQPSRVGGRTIRSAKLVVSQPCVLFPKLNPRIPRIWNITS 249 Query: 237 LPPQMALASCEFVVLSPLGVDTSVLWSALRQPEVSTSLAQLVAGTSGSHQRIGPKDLLDL 296 LP +MALAS EFVVL P+GVDTS LW+ALRQP+V L QLV G +GS QRI P LL + Sbjct: 250 LPSEMALASTEFVVLRPVGVDTSALWAALRQPDVLAELRQLVGGMTGSRQRIQPTQLLRV 309 Query: 297 QVPDVRRLGAAQSATITDLGALCHARRGQCAQLAALRDALLPGLVTG 343 V DVRRL +A I +LGALC+ RR + A+LA+ RDALLP L++G Sbjct: 310 WVRDVRRLTPGHAAAIANLGALCNERRIESARLASCRDALLPLLMSG 356 >tr|C6DLE6|C6DLE6_MYCTK Tax_Id=478434 SubName: Full=Type I restriction/modification system specificity determinant hsdS;[Mycobacterium tuberculosis] Length = 364 Score = 420 bits (1079), Expect = e-115 Identities = 216/347 (62%), Positives = 254/347 (73%), Gaps = 4/347 (1%) Query: 1 VRLGEHLEFR----SGSCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCG 56 VRLG+HL+F SG SP GR PVYGANG IG++A+HN GPLIVVGRVGSYCG Sbjct: 10 VRLGDHLDFSNGHTSGHTSPASEPGGRYPVYGANGVIGYSAQHNARGPLIVVGRVGSYCG 69 Query: 57 SVRYCDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSV 116 S+RYCDSDVWVTDNA CRA P ETRYWYYAL LN +RAGSGQPLL+Q LR VSV Sbjct: 70 SLRYCDSDVWVTDNALACRAKKPEETRYWYYALLGFGLNRYRAGSGQPLLSQGVLRNVSV 129 Query: 117 HVAQAPERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGSVDARVALSGLARRSTKLV 176 AP+R RI E+LGA DDKIA N+RVIEAAEALM+A+VG + A V LS LA RST + Sbjct: 130 SAVAAPDRPRIGEILGAFDDKIAANDRVIEAAEALMLAIVGRLSAYVPLSSLASRSTACL 189 Query: 177 NPADFDDVVAHFSLPAFDAGAHARPVAGASVKSGKFHLSEPCVLFAKLNPRVPRIWNVVR 236 + FD VAH+S AFD GA V G +++S K +S+PCVLF KLNPR+PRIWN+ Sbjct: 190 DAQHFDSTVAHYSFAAFDGGAQPSRVGGRTIRSAKLVVSQPCVLFPKLNPRIPRIWNITS 249 Query: 237 LPPQMALASCEFVVLSPLGVDTSVLWSALRQPEVSTSLAQLVAGTSGSHQRIGPKDLLDL 296 LP +MALAS EFVVL P+GVDTS LW+ALRQP+V L QLV G +GS QRI P LL + Sbjct: 250 LPSEMALASTEFVVLRPVGVDTSALWAALRQPDVLAELRQLVGGMTGSRQRIQPTQLLRV 309 Query: 297 QVPDVRRLGAAQSATITDLGALCHARRGQCAQLAALRDALLPGLVTG 343 V DVRRL +A I +LGALC+ RR + A+LA+ RDALLP L++G Sbjct: 310 WVRDVRRLTPGHAAAIANLGALCNERRIESARLASCRDALLPLLMSG 356 >tr|C1AFM3|C1AFM3_MYCBT Tax_Id=561275 (hsdS)SubName: Full=Putative type I restriction/modification system specificity determinant;[Mycobacterium bovis] Length = 364 Score = 420 bits (1079), Expect = e-115 Identities = 216/347 (62%), Positives = 254/347 (73%), Gaps = 4/347 (1%) Query: 1 VRLGEHLEFR----SGSCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCG 56 VRLG+HL+F SG SP GR PVYGANG IG++A+HN GPLIVVGRVGSYCG Sbjct: 10 VRLGDHLDFSNGHTSGHTSPASEPGGRYPVYGANGVIGYSAQHNARGPLIVVGRVGSYCG 69 Query: 57 SVRYCDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSV 116 S+RYCDSDVWVTDNA CRA P ETRYWYYAL LN +RAGSGQPLL+Q LR VSV Sbjct: 70 SLRYCDSDVWVTDNALACRAKKPEETRYWYYALLGFGLNRYRAGSGQPLLSQGVLRNVSV 129 Query: 117 HVAQAPERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGSVDARVALSGLARRSTKLV 176 AP+R RI E+LGA DDKIA N+RVIEAAEALM+A+VG + A V LS LA RST + Sbjct: 130 SAVAAPDRPRIGEILGAFDDKIAANDRVIEAAEALMLAIVGRLSAYVPLSSLASRSTACL 189 Query: 177 NPADFDDVVAHFSLPAFDAGAHARPVAGASVKSGKFHLSEPCVLFAKLNPRVPRIWNVVR 236 + FD VAH+S AFD GA V G +++S K +S+PCVLF KLNPR+PRIWN+ Sbjct: 190 DAQHFDSTVAHYSFAAFDGGAQPSRVGGRTIRSAKLVVSQPCVLFPKLNPRIPRIWNITS 249 Query: 237 LPPQMALASCEFVVLSPLGVDTSVLWSALRQPEVSTSLAQLVAGTSGSHQRIGPKDLLDL 296 LP +MALAS EFVVL P+GVDTS LW+ALRQP+V L QLV G +GS QRI P LL + Sbjct: 250 LPSEMALASTEFVVLRPVGVDTSALWAALRQPDVLAELRQLVGGMTGSRQRIQPTQLLRV 309 Query: 297 QVPDVRRLGAAQSATITDLGALCHARRGQCAQLAALRDALLPGLVTG 343 V DVRRL +A I +LGALC+ RR + A+LA+ RDALLP L++G Sbjct: 310 WVRDVRRLTPGHAAAIANLGALCNERRIESARLASCRDALLPLLMSG 356 >tr|A5U6B4|A5U6B4_MYCTA Tax_Id=419947 (hsdS)SubName: Full=Type I restriction system specificity protein;[Mycobacterium tuberculosis] Length = 364 Score = 420 bits (1079), Expect = e-115 Identities = 216/347 (62%), Positives = 254/347 (73%), Gaps = 4/347 (1%) Query: 1 VRLGEHLEFR----SGSCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCG 56 VRLG+HL+F SG SP GR PVYGANG IG++A+HN GPLIVVGRVGSYCG Sbjct: 10 VRLGDHLDFSNGHTSGHTSPASEPGGRYPVYGANGVIGYSAQHNARGPLIVVGRVGSYCG 69 Query: 57 SVRYCDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSV 116 S+RYCDSDVWVTDNA CRA P ETRYWYYAL LN +RAGSGQPLL+Q LR VSV Sbjct: 70 SLRYCDSDVWVTDNALACRAKKPEETRYWYYALLGFGLNRYRAGSGQPLLSQGVLRNVSV 129 Query: 117 HVAQAPERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGSVDARVALSGLARRSTKLV 176 AP+R RI E+LGA DDKIA N+RVIEAAEALM+A+VG + A V LS LA RST + Sbjct: 130 SAVAAPDRPRIGEILGAFDDKIAANDRVIEAAEALMLAIVGRLSAYVPLSSLASRSTACL 189 Query: 177 NPADFDDVVAHFSLPAFDAGAHARPVAGASVKSGKFHLSEPCVLFAKLNPRVPRIWNVVR 236 + FD VAH+S AFD GA V G +++S K +S+PCVLF KLNPR+PRIWN+ Sbjct: 190 DAQHFDSTVAHYSFAAFDGGAQPSRVGGRTIRSAKLVVSQPCVLFPKLNPRIPRIWNITS 249 Query: 237 LPPQMALASCEFVVLSPLGVDTSVLWSALRQPEVSTSLAQLVAGTSGSHQRIGPKDLLDL 296 LP +MALAS EFVVL P+GVDTS LW+ALRQP+V L QLV G +GS QRI P LL + Sbjct: 250 LPSEMALASTEFVVLRPVGVDTSALWAALRQPDVLAELRQLVGGMTGSRQRIQPTQLLRV 309 Query: 297 QVPDVRRLGAAQSATITDLGALCHARRGQCAQLAALRDALLPGLVTG 343 V DVRRL +A I +LGALC+ RR + A+LA+ RDALLP L++G Sbjct: 310 WVRDVRRLTPGHAAAIANLGALCNERRIESARLASCRDALLPLLMSG 356 >tr|A1KMA2|A1KMA2_MYCBP Tax_Id=410289 (hsdS)SubName: Full=Possible type I restriction/modification system specificity determinant hsdS;[Mycobacterium bovis] Length = 364 Score = 420 bits (1079), Expect = e-115 Identities = 216/347 (62%), Positives = 254/347 (73%), Gaps = 4/347 (1%) Query: 1 VRLGEHLEFR----SGSCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCG 56 VRLG+HL+F SG SP GR PVYGANG IG++A+HN GPLIVVGRVGSYCG Sbjct: 10 VRLGDHLDFSNGHTSGHTSPASEPGGRYPVYGANGVIGYSAQHNARGPLIVVGRVGSYCG 69 Query: 57 SVRYCDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSV 116 S+RYCDSDVWVTDNA CRA P ETRYWYYAL LN +RAGSGQPLL+Q LR VSV Sbjct: 70 SLRYCDSDVWVTDNALACRAKKPEETRYWYYALLGFGLNRYRAGSGQPLLSQGVLRNVSV 129 Query: 117 HVAQAPERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGSVDARVALSGLARRSTKLV 176 AP+R RI E+LGA DDKIA N+RVIEAAEALM+A+VG + A V LS LA RST + Sbjct: 130 SAVAAPDRPRIGEILGAFDDKIAANDRVIEAAEALMLAIVGRLSAYVPLSSLASRSTACL 189 Query: 177 NPADFDDVVAHFSLPAFDAGAHARPVAGASVKSGKFHLSEPCVLFAKLNPRVPRIWNVVR 236 + FD VAH+S AFD GA V G +++S K +S+PCVLF KLNPR+PRIWN+ Sbjct: 190 DAQHFDSTVAHYSFAAFDGGAQPSRVGGRTIRSAKLVVSQPCVLFPKLNPRIPRIWNITS 249 Query: 237 LPPQMALASCEFVVLSPLGVDTSVLWSALRQPEVSTSLAQLVAGTSGSHQRIGPKDLLDL 296 LP +MALAS EFVVL P+GVDTS LW+ALRQP+V L QLV G +GS QRI P LL + Sbjct: 250 LPSEMALASTEFVVLRPVGVDTSALWAALRQPDVLAELRQLVGGMTGSRQRIQPTQLLRV 309 Query: 297 QVPDVRRLGAAQSATITDLGALCHARRGQCAQLAALRDALLPGLVTG 343 V DVRRL +A I +LGALC+ RR + A+LA+ RDALLP L++G Sbjct: 310 WVRDVRRLTPGHAAAIANLGALCNERRIESARLASCRDALLPLLMSG 356 >tr|A5WR12|A5WR12_MYCTF Tax_Id=336982 SubName: Full=Type I restriction/modification system specificity determinant hsdS;[Mycobacterium tuberculosis] Length = 364 Score = 420 bits (1079), Expect = e-115 Identities = 216/347 (62%), Positives = 254/347 (73%), Gaps = 4/347 (1%) Query: 1 VRLGEHLEFR----SGSCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCG 56 VRLG+HL+F SG SP GR PVYGANG IG++A+HN GPLIVVGRVGSYCG Sbjct: 10 VRLGDHLDFSNGHTSGHTSPASEPGGRYPVYGANGVIGYSAQHNARGPLIVVGRVGSYCG 69 Query: 57 SVRYCDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSV 116 S+RYCDSDVWVTDNA CRA P ETRYWYYAL LN +RAGSGQPLL+Q LR VSV Sbjct: 70 SLRYCDSDVWVTDNALACRAKKPEETRYWYYALLGFGLNRYRAGSGQPLLSQGVLRNVSV 129 Query: 117 HVAQAPERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGSVDARVALSGLARRSTKLV 176 AP+R RI E+LGA DDKIA N+RVIEAAEALM+A+VG + A V LS LA RST + Sbjct: 130 SAVAAPDRPRIGEILGAFDDKIAANDRVIEAAEALMLAIVGRLSAYVPLSSLASRSTACL 189 Query: 177 NPADFDDVVAHFSLPAFDAGAHARPVAGASVKSGKFHLSEPCVLFAKLNPRVPRIWNVVR 236 + FD VAH+S AFD GA V G +++S K +S+PCVLF KLNPR+PRIWN+ Sbjct: 190 DAQHFDSTVAHYSFAAFDGGAQPSRVGGRTIRSAKLVVSQPCVLFPKLNPRIPRIWNITS 249 Query: 237 LPPQMALASCEFVVLSPLGVDTSVLWSALRQPEVSTSLAQLVAGTSGSHQRIGPKDLLDL 296 LP +MALAS EFVVL P+GVDTS LW+ALRQP+V L QLV G +GS QRI P LL + Sbjct: 250 LPSEMALASTEFVVLRPVGVDTSALWAALRQPDVLAELRQLVGGMTGSRQRIQPTQLLRV 309 Query: 297 QVPDVRRLGAAQSATITDLGALCHARRGQCAQLAALRDALLPGLVTG 343 V DVRRL +A I +LGALC+ RR + A+LA+ RDALLP L++G Sbjct: 310 WVRDVRRLTPGHAAAIANLGALCNERRIESARLASCRDALLPLLMSG 356 >tr|A2VL97|A2VL97_MYCTU Tax_Id=348776 SubName: Full=Type I restriction/modification system specificity determinant hsdS;[Mycobacterium tuberculosis C] Length = 364 Score = 420 bits (1079), Expect = e-115 Identities = 216/347 (62%), Positives = 254/347 (73%), Gaps = 4/347 (1%) Query: 1 VRLGEHLEFR----SGSCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCG 56 VRLG+HL+F SG SP GR PVYGANG IG++A+HN GPLIVVGRVGSYCG Sbjct: 10 VRLGDHLDFSNGHTSGHTSPASEPGGRYPVYGANGVIGYSAQHNARGPLIVVGRVGSYCG 69 Query: 57 SVRYCDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSV 116 S+RYCDSDVWVTDNA CRA P ETRYWYYAL LN +RAGSGQPLL+Q LR VSV Sbjct: 70 SLRYCDSDVWVTDNALACRAKKPEETRYWYYALLGFGLNRYRAGSGQPLLSQGVLRNVSV 129 Query: 117 HVAQAPERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGSVDARVALSGLARRSTKLV 176 AP+R RI E+LGA DDKIA N+RVIEAAEALM+A+VG + A V LS LA RST + Sbjct: 130 SAVAAPDRPRIGEILGAFDDKIAANDRVIEAAEALMLAIVGRLSAYVPLSSLASRSTACL 189 Query: 177 NPADFDDVVAHFSLPAFDAGAHARPVAGASVKSGKFHLSEPCVLFAKLNPRVPRIWNVVR 236 + FD VAH+S AFD GA V G +++S K +S+PCVLF KLNPR+PRIWN+ Sbjct: 190 DAQHFDSTVAHYSFAAFDGGAQPSRVGGRTIRSAKLVVSQPCVLFPKLNPRIPRIWNITS 249 Query: 237 LPPQMALASCEFVVLSPLGVDTSVLWSALRQPEVSTSLAQLVAGTSGSHQRIGPKDLLDL 296 LP +MALAS EFVVL P+GVDTS LW+ALRQP+V L QLV G +GS QRI P LL + Sbjct: 250 LPSEMALASTEFVVLRPVGVDTSALWAALRQPDVLAELRQLVGGMTGSRQRIQPTQLLRV 309 Query: 297 QVPDVRRLGAAQSATITDLGALCHARRGQCAQLAALRDALLPGLVTG 343 V DVRRL +A I +LGALC+ RR + A+LA+ RDALLP L++G Sbjct: 310 WVRDVRRLTPGHAAAIANLGALCNERRIESARLASCRDALLPLLMSG 356 >tr|A4KK35|A4KK35_MYCTU Tax_Id=395095 SubName: Full=Type I restriction/modification system specificity determinant hsdS;[Mycobacterium tuberculosis str. Haarlem] Length = 364 Score = 419 bits (1076), Expect = e-115 Identities = 215/347 (61%), Positives = 254/347 (73%), Gaps = 4/347 (1%) Query: 1 VRLGEHLEFRSGSCS----PPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCG 56 VRLG+HL+F +G S P GR PVYGANG IG++A+HN GPLIVVGRVGSYCG Sbjct: 10 VRLGDHLDFSNGHTSVHTSPASEPGGRYPVYGANGVIGYSAQHNARGPLIVVGRVGSYCG 69 Query: 57 SVRYCDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSV 116 S+RYCDSDVWVTDNA CRA P ETRYWYYAL LN +RAGSGQPLL+Q LR VSV Sbjct: 70 SLRYCDSDVWVTDNALACRAKKPEETRYWYYALLGFGLNRYRAGSGQPLLSQGVLRNVSV 129 Query: 117 HVAQAPERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGSVDARVALSGLARRSTKLV 176 AP+R RI E+LGA DDKIA N+RVIEAAEALM+A+VG + A V LS LA RST + Sbjct: 130 SAVAAPDRPRIGEILGAFDDKIAANDRVIEAAEALMLAIVGRLSAYVPLSSLASRSTACL 189 Query: 177 NPADFDDVVAHFSLPAFDAGAHARPVAGASVKSGKFHLSEPCVLFAKLNPRVPRIWNVVR 236 + FD VAH+S AFD GA V G +++S K +S+PCVLF KLNPR+PRIWN+ Sbjct: 190 DAQHFDSTVAHYSFAAFDGGAQPSRVGGRTIRSAKLVVSQPCVLFPKLNPRIPRIWNITS 249 Query: 237 LPPQMALASCEFVVLSPLGVDTSVLWSALRQPEVSTSLAQLVAGTSGSHQRIGPKDLLDL 296 LP +MALAS EFVVL P+GVDTS LW+ALRQP+V L QLV G +GS QRI P LL + Sbjct: 250 LPSEMALASTEFVVLRPVGVDTSALWAALRQPDVLAELRQLVGGMTGSRQRIQPTQLLRV 309 Query: 297 QVPDVRRLGAAQSATITDLGALCHARRGQCAQLAALRDALLPGLVTG 343 V DVRRL +A I +LGALC+ RR + A+LA+ RDALLP L++G Sbjct: 310 WVRDVRRLTPGHAAAIANLGALCNERRIESARLASCRDALLPLLMSG 356 >tr|Q1IWS4|Q1IWS4_DEIGD Tax_Id=319795 SubName: Full=Restriction modification system DNA specificity domain;[Deinococcus geothermalis] Length = 417 Score = 164 bits (415), Expect = 2e-38 Identities = 127/403 (31%), Positives = 188/403 (46%), Gaps = 57/403 (14%) Query: 3 LGEHLEFRSGSCSPPRRAR--GRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRY 60 +GE F G P R + G VPVYG+NG +GF GP IV+GR G+ G+V Y Sbjct: 10 VGEIAPFSYGKGLPERERKQTGSVPVYGSNGIVGFHDSALTGGPTIVIGRKGTV-GAVHY 68 Query: 61 CDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQ 120 W D + +D + RY YY L++ L A S P LN+ V + + Sbjct: 69 SPIPCWPIDTTFFVSDSDRSLVRYSYYLLKSLGLENMNADSAVPGLNRDAAHARIVLIPR 128 Query: 121 -APERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGS--------------------- 158 E+R IA +LG LDDKI N + E EA+ A+ + Sbjct: 129 DKAEQRAIAHILGTLDDKIELNRKQSETLEAMARALFKAWFVDFEPVRAKMEGRWQRGQS 188 Query: 159 ----------------VDARV----------ALSGLARRSTKLVNPADF-DDVVAHFSLP 191 VD+ + A +A++ +VNP + D+ H+SLP Sbjct: 189 LPGLPAHLYDLFPDRLVDSELGEIPEGWRVFAFGDVAQQGKGVVNPGNSPQDLFTHYSLP 248 Query: 192 AFDAGAHARPVAGASVKSGKFHLSEPCVLFAKLNPRVPRIWNVVRLPPQMALASCEFVVL 251 AFD+ G ++KS K + + VL +KLNP +PR+W+V P A+ S EF+V Sbjct: 249 AFDSAHCPSIEPGHAIKSNKTPVPDGAVLVSKLNPHIPRVWHVGTAGPN-AVCSTEFIVW 307 Query: 252 SPLG-VDTSVLWSALRQPEVSTSLAQLVAGTSGSHQRIGPKDLLDLQV--PDVRRLGAAQ 308 +P +++ L+ PE S ++ QLV GTS SHQR+ P L +++V + A Sbjct: 308 APKAPANSAFLYCLASSPEFSGAMHQLVTGTSNSHQRVKPDQLREIRVFAATENAIEAFS 367 Query: 309 SATITDLGALCHARRGQCAQLAALRDALLPGLVTGEVAVSGGE 351 + L + R+ Q LA LRDALLP L++GE+ ++ E Sbjct: 368 EWVRSPLEKILQNRQ-QSRTLAQLRDALLPRLISGELRIADAE 409 >tr|Q60AL4|Q60AL4_METCA Tax_Id=414 SubName: Full=Type I restriction-modification system, S subunit, EcoA family;[Methylococcus capsulatus] Length = 416 Score = 140 bits (354), Expect = 2e-31 Identities = 122/404 (30%), Positives = 178/404 (44%), Gaps = 54/404 (13%) Query: 3 LGEHLEFRSGSCSPPR-RARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYC 61 LG+ +E + G P + R G VP+ ++G A+ V GP +V GR G+ G V Y Sbjct: 10 LGDVIELKRGYDLPQKDRLPGDVPLVSSSGVTDTHAKAMVKGPGVVTGRYGTL-GQVFYV 68 Query: 62 DSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQA 121 + D W + R + R+ Y L+ + + + P LN+ L + V + Sbjct: 69 EQDFWPLNTTLYVRDFKGNDPRFISYFLRDVDFHAYSDKAAVPGLNRNHLHQAKVRIPSD 128 Query: 122 P-ERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGSV-------------DARVALSG 167 P E+R IA +LG LDDKI N R E EA+ A+ + D VA +G Sbjct: 129 PNEQRAIAHILGTLDDKIELNRRQNETLEAMARALFKAWFVDFEPVRAKCRGDRPVAPTG 188 Query: 168 ----------------------------------LARRSTKLVNPA-DFDDVVAHFSLPA 192 +A + VNP+ + + H+SLPA Sbjct: 189 WQWPQHILDLFPDRLVESELGEIPEGWRVFSFGDVAEQGKGFVNPSREPGERFTHYSLPA 248 Query: 193 FDAGAHARPVAGASVKSGKFHLSEPCVLFAKLNPRVPRIWNVVRLPPQMALASCEFVVLS 252 FDAG G S+KS K + + VL +KLNP +PRIW +V A+ S EF+V + Sbjct: 249 FDAGKMPVIEPGESIKSNKTPVPDGAVLVSKLNPHIPRIW-LVGEAGNRAVCSTEFIVWT 307 Query: 253 PLG-VDTSVLWSALRQPEVSTSLAQLVAGTSGSHQRIGPKDLLDLQV-PDVRRLGAAQSA 310 P ++ ++ PE ++ QLV GTS SHQR+ P L +++V + S Sbjct: 308 PKSPAQSAFVYCLASSPEFVGAMCQLVTGTSNSHQRVKPDQLREIRVFAGNENVVETFSK 367 Query: 311 TITDLGALCHARRGQCAQLAALRDALLPGLVTGEVAVSGGELLL 354 T L Q LA LRD LLP L++GE+ V E L Sbjct: 368 TAEPLMDQFLQNTRQSRILAQLRDTLLPKLISGELRVKDAEAFL 411 >tr|C4ZIB4|C4ZIB4_THASP Tax_Id=85643 SubName: Full=Restriction modification system DNA specificity domain protein;[Thauera sp.] Length = 378 Score = 114 bits (285), Expect = 2e-23 Identities = 63/151 (41%), Positives = 83/151 (54%), Gaps = 3/151 (1%) Query: 1 VRLGEHLEFRSGSCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRY 60 V LGE ++F +G P + G P YG+NG IG A + I++GRVG+YCGSV Y Sbjct: 7 VTLGEVVDFFNGKAIKPGQD-GEYPAYGSNGLIGGAPDWKYENS-IIIGRVGAYCGSVAY 64 Query: 61 CDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQ 120 C S W +DN V R + Y+YY L+ LN + G+ QPL+ Q L+ V V Sbjct: 65 CKSRFWASDNTIVARPKS-GDVGYFYYLLKALELNRYAGGAAQPLVTQTVLKGVPARVPD 123 Query: 121 APERRRIAEVLGALDDKIANNERVIEAAEAL 151 P +RRIA +L A DD I NN R I E + Sbjct: 124 IPTQRRIASILSAYDDLIENNTRRIAILEEM 154 Score = 41.2 bits (95), Expect = 0.20 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 5/128 (3%) Query: 21 RGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGS-----VRYCDSDVWVTDNAYVCR 75 +G P YGA + ++ G +++ GS ++ + W ++ ++ R Sbjct: 216 KGPYPYYGAAKIFDYVEDYIFDGRFVLMAEDGSVITPDGFPVLQLANGRFWANNHTHILR 275 Query: 76 ANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVLGALD 135 A T + Y L + +++ + G+ QP + Q + + V + R E++G Sbjct: 276 GTPDASTEFIYLRLSSQKVSGYITGAAQPKITQANMNRIPVCLPPRDLMARFTELVGPKF 335 Query: 136 DKIANNER 143 D I ER Sbjct: 336 DLIDCLER 343 >tr|C8NDJ8|C8NDJ8_9GAMM Tax_Id=638300 SubName: Full=Restriction modification system DNA specificity domain protein;[Cardiobacterium hominis ATCC 15826] Length = 391 Score = 107 bits (267), Expect = 2e-21 Identities = 52/143 (36%), Positives = 88/143 (61%), Gaps = 4/143 (2%) Query: 3 LGEHLEFRSGSCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCD 62 L + ++F++G P + G +P+YG NG +G++ ++N + ++++GRVG+YCGS+ Y Sbjct: 10 LSDLIDFKNGKSIKP--SSGDIPIYGGNGILGYSEKYNYNN-ILIIGRVGAYCGSIHYHK 66 Query: 63 SDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAP 122 WV+DNA Y YY +++ LN+ + GS QPLL Q L +SV + ++ Sbjct: 67 EKCWVSDNAIAGEVKSDYSIDYLYYLMKSLNLNDRQVGSSQPLLTQGVLNNISVKIYESS 126 Query: 123 E-RRRIAEVLGALDDKIANNERV 144 + ++ IA VL ALD KIA N+++ Sbjct: 127 QTQQSIAAVLSALDKKIALNKQI 149 >tr|A8L1U1|A8L1U1_FRASN Tax_Id=298653 SubName: Full=Restriction modification system DNA specificity domain;[Frankia sp.] Length = 374 Score = 105 bits (263), Expect = 7e-21 Identities = 106/364 (29%), Positives = 156/364 (42%), Gaps = 20/364 (5%) Query: 3 LGEHLEFRSGSCSP-PRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYC 61 L + + R G P P R G PV G+ G G+ ++GP I +GR GS G+V Y Sbjct: 9 LADLVRLRRGFDLPAPERRAGCFPVVGSAGVSGWHDRGPIAGPGITLGRSGSSIGTVTYV 68 Query: 62 DSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQA 121 SD W + + R+ Y+ L+T +GS QP LN+ + V + + Sbjct: 69 PSDYWPLNTVLFVEDFQGNDPRFLYFLLRTIDFARFNSGSAQPSLNRNYIAAVELRAPEY 128 Query: 122 PERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGSVDA-----RVALSGLARRSTKLV 176 PE+R IA VLGALDDKIA N R+ A L A + + L L T+ + Sbjct: 129 PEQRAIAAVLGALDDKIALNHRLASTARELAEARYAAATRGPGRRELRLGDLVETLTRGI 188 Query: 177 NP---ADFDDVVAHFSLPAFDAG----AHARPVAGASVKSGKFHLSEPCVLFAKLNPRVP 229 P AD D + + AG A AR A+V + K ++ ++ + + Sbjct: 189 TPRYTAD-DSALVVLNQKCVRAGRVDLAPARGTDPATVPAAKRLRADDVLVNSTGIGTLG 247 Query: 230 RIWNVVRLPPQMALASCEFVVLSPLGVDTSVLWSALRQPEVSTSLAQLVAGTSGSHQ--R 287 R+ V + V L+P +D + A +A L G++ + R Sbjct: 248 RVARWVHATRATVDSHVTVVRLAPDRLDP--VCGAFALLAAQPRIASLGEGSTSQTELSR 305 Query: 288 IGPKDLLDLQVPDVRRLGAAQSATITDLGALCHARRGQCAQLAALRDALLPGLVTGEVAV 347 DL+ + VP R A A + L A A + A LA LRDAL P L++GE+ V Sbjct: 306 AALNDLV-IAVPAAERC-AEIGAELAALDARGEAAHAESAALARLRDALSPKLMSGEIRV 363 Query: 348 SGGE 351 E Sbjct: 364 RDAE 367 >tr|Q9P9X9|Q9P9X9_XYLFA Tax_Id=2371 SubName: Full=Type I restriction-modification system specificity determinant;[Xylella fastidiosa] Length = 412 Score = 97.8 bits (242), Expect = 2e-18 Identities = 100/395 (25%), Positives = 160/395 (40%), Gaps = 66/395 (16%) Query: 19 RARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVWVTDNAYVCRAND 78 + G+ V+G+NGPIG+ + GP +V+GR G+Y G V +C WV D AY Sbjct: 29 QTHGKCRVFGSNGPIGWTSYAMTQGPGVVLGRKGAYRG-VEFCHESFWVIDTAYYLVPKT 87 Query: 79 PAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVLGALDDKI 138 + R+ YYA++ +L E GS P + + + + V E+ IA++LG LDDKI Sbjct: 88 DLDMRWLYYAVKHYKLGEVDDGSPIPSTTRAAVYMLELDVPPKHEQHAIAKILGTLDDKI 147 Query: 139 ANNERVIEAAEALMVAM-----VGSVDARVALSGLARRSTKL------------------ 175 N R E EA+ A+ V R L G +R L Sbjct: 148 ELNRRTNETLEAMARALFKAWCVDFEPVRAKLEGRWQRGESLPGLPAHLYDLFPARLIES 207 Query: 176 ------------------------VNPADFDDVVAHFSLPAFDAGAHARPVAGAS--VKS 209 V P++ D ++ +L A G + ++S Sbjct: 208 EWGEIPEGWRVDSLGKVAVHLRRSVQPSEIKDETSYIALEHMPKRCIALAEWGVANGIES 267 Query: 210 GKFHLSEPCVLFAKLNPRVPRIWNVVRLPPQMALASCEFVVLSPLGVDTSVLWSALRQPE 269 K+ + +LF KL P ++ V + P + S + VV++P+ W Sbjct: 268 NKYEFKQGEILFGKLRP----YFHKVGVAPVDGVCSTDIVVIAPI----LPTWFGFVLVH 319 Query: 270 VSTS--LAQLVAGTSGSHQ-RIGPKDLLDLQVPDV---RRLGAAQSATITDLGALCHARR 323 VS+ + AG++G+ R ++ Q P V + A + I L + Sbjct: 320 VSSDAFVEYTNAGSTGTKMPRTSWSEM--AQYPVVLPHEDVAVAFNQHIQALSEEIIIKI 377 Query: 324 GQCAQLAALRDALLPGLVTGEVAVSGGELLLASPL 358 + L LRD LLP L++GE+ V E + + L Sbjct: 378 HESRSLVQLRDTLLPKLISGELRVPDAERITGAAL 412 >tr|Q12WN6|Q12WN6_METBU Tax_Id=259564 SubName: Full=Restriction modification system DNA specificity subunit;[Methanococcoides burtonii] Length = 351 Score = 94.4 bits (233), Expect = 2e-17 Identities = 53/167 (31%), Positives = 90/167 (53%), Gaps = 9/167 (5%) Query: 3 LGEHLEFRSGSCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCD 62 LG+ F +G P G +P+YG NG +G++ + N G +++GRVG+YCGS+ Sbjct: 181 LGDVASFHNGKKRPDDIIEGNIPIYGGNGILGYSDKSNNEGVTVIIGRVGAYCGSLYIER 240 Query: 63 SDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAP 122 + VW++DNA V + + + + ++ L++ +LNE GS PLL Q L+ + + + P Sbjct: 241 NPVWISDNALVAKPINKEHSSFLFFLLKSLQLNEIAEGSSHPLLTQNLLKSIQIIL---P 297 Query: 123 ERRRIAEVLGALD---DKIANNERVIEAAEAL---MVAMVGSVDARV 163 RI + D +KI N + I E L +++ + S +ARV Sbjct: 298 PEHRIEPFVYQADTWFNKIDKNNKQIRTLEKLRDTLLSKLMSGEARV 344 Score = 76.6 bits (187), Expect = 4e-12 Identities = 53/155 (34%), Positives = 77/155 (49%), Gaps = 9/155 (5%) Query: 2 RLGEHLEFRSGSCSPPR-RARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRY 60 +LG+ L G P R R G++PVY + G G+ E V+ +++GR G+ G + Y Sbjct: 9 KLGDVLVLNYGKSLPERKRVEGKIPVYSSAGLTGYHNETLVNSEGLIIGRKGTV-GKIYY 67 Query: 61 CDSDVWVTDNAYVCRANDPAETRYW----YYALQTCRLNEHRAGSGQPLLNQRTLREVSV 116 + + D AY P ET+Y+ YY L+T L E S P LN+ T + Sbjct: 68 SKTPFFCIDTAYYIL---PEETKYYLNFIYYLLKTIGLEELNEDSAVPRLNRNTAYSQDI 124 Query: 117 HVAQAPERRRIAEVLGALDDKIANNERVIEAAEAL 151 + PE+R IA VL +LDDKI R + EA+ Sbjct: 125 LLPPLPEQRAIASVLSSLDDKIDLLHRQNKTLEAM 159 >tr|Q4FTC7|Q4FTC7_PSYA2 Tax_Id=259536 SubName: Full=Probable type I restriction modification system methylase; EC=3.1.21.3;[Psychrobacter arcticus] Length = 424 Score = 94.0 bits (232), Expect = 3e-17 Identities = 59/165 (35%), Positives = 80/165 (48%), Gaps = 5/165 (3%) Query: 3 LGEHLEFRSGSCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCD 62 LG+ +G SP R A G +PV+G+NG IG E N I++GRVGSYCGS++Y Sbjct: 253 LGDFAILGNGKTSPDR-AVGDIPVFGSNGKIGDCDESNRDNT-IIIGRVGSYCGSLQYYP 310 Query: 63 SDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAP 122 W+TDNA + Y + L LN+ R GSGQPLLNQ LR + P Sbjct: 311 FKCWITDNAMSAEMKNKDHNIYLFQLLSRDNLNDRRTGSGQPLLNQSILRSIKTITPSVP 370 Query: 123 ---ERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGSVDARVA 164 E RIA +K N + ++ + S + R+A Sbjct: 371 LIDEYSRIANSFYKKINKANRNNAALAKLRDTLLPKLMSGELRIA 415 Score = 50.4 bits (119), Expect = 3e-04 Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 17/123 (13%) Query: 46 IVVGRVGSYCGSVRYCDSDVWVTDNAYVCRANDPA------ETRYWYYALQT----CRLN 95 +V+ RVGSY G V Y +S N C + A +R+ YY L + ++ Sbjct: 71 LVISRVGSY-GVVSYVNS------NEKFCLGQNTAFIIPKINSRFLYYQLISPFVKWQIE 123 Query: 96 EHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVLGALDDKIANNERVIEAAEALMVAM 155 + G+ Q ++ +++R+ + + E++ IA +LG+LDDKI N ++ E EA+ A+ Sbjct: 124 QFVVGAVQKTISLKSIRQFQIKLPPVTEQKAIAHILGSLDDKIELNRQMNETLEAMAQAL 183 Query: 156 VGS 158 S Sbjct: 184 FKS 186 >tr|C2MGH1|C2MGH1_BACCE Tax_Id=526973 SubName: Full=Type I restriction-modification enzyme, S subunit;[Bacillus cereus m1293] Length = 475 Score = 93.2 bits (230), Expect = 4e-17 Identities = 49/130 (37%), Positives = 75/130 (57%), Gaps = 1/130 (0%) Query: 21 RGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVWVTDNAYVCRANDP- 79 +G +PVYG NG G + NV IV+GRVG YCGSV + WVTDNA+V + Sbjct: 55 QGMIPVYGGNGITGTHDKSNVETETIVIGRVGYYCGSVHLTSEEAWVTDNAFVLSFPEKI 114 Query: 80 AETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVLGALDDKIA 139 + ++ Y+ L+ C L ++ S QP+++ +T+ V ++V E++RI E + L KI Sbjct: 115 IDKKFIYWNLKHCNLGQYSKSSAQPVISGKTIGPVGINVPPYLEQKRIVEKVERLLGKIE 174 Query: 140 NNERVIEAAE 149 + +IE AE Sbjct: 175 EAKALIEEAE 184 >tr|Q31IU4|Q31IU4_THICR Tax_Id=317025 SubName: Full=Type I restriction enzyme, S subunit;[Thiomicrospira crunogena] Length = 371 Score = 92.4 bits (228), Expect = 8e-17 Identities = 94/373 (25%), Positives = 143/373 (38%), Gaps = 33/373 (8%) Query: 1 VRLGEHLEFRSGSCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRY 60 + L + L ++G + G ++G+NG IG E N + +++GRVG+YCGS+ Sbjct: 6 IELSKALNLKNGKALK-NTSNGIYQIFGSNGVIG-TTELNNNENALIIGRVGAYCGSIEL 63 Query: 61 CDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHV-A 119 W +DN V YWYY L++ L + G+ QPLL Q TL+ + + Sbjct: 64 SQEKFWASDNTIVAEPKPDNVLHYWYYRLKSFPLRKFAGGAAQPLLTQNTLKPLKIAAHT 123 Query: 120 QAPERRRIAEVLGALDDKIANNERVI----EAAEAL-----------------MVAMVGS 158 E+ +IA +L DD I NN R I E+A L ++ V Sbjct: 124 DYLEQDKIANILKVYDDLIENNNRRIALLEESARLLYQEWFVHLRFPGHEHCKIIDGVPE 183 Query: 159 VDARVALSGLARRSTKLVNPADFDDVVAHFSLPAFDAGAHARPV--AGASVKSGKFHLSE 216 R L L + VNP D + L + V S K+ Sbjct: 184 GWERTRLEDLIEEIKEAVNPESIDSETPYIGLEHMPRRSITLSEWETVEKVTSKKYRYYS 243 Query: 217 PCVLFAKLNPRVPRIWNVVRLPPQMALASCEFVVLSPLGVDTSVLWSALRQPEVSTSLAQ 276 ++F K+ P ++ + + S + VV+ + + SLA Sbjct: 244 GDIIFGKIRPYFHKVGFAIT----DGVTSSDAVVVRSKDISNYQYLLMYLSSDFFISLAS 299 Query: 277 LVAGTSGSHQRIGPKDLL--DLQVPDVRRLGAAQSATITDLGALCHARRGQCAQLAALRD 334 R K L+ D+QVP L + + L L Q QL RD Sbjct: 300 KTVKEGSKMPRADWKYLMTTDVQVPSDFLLKSFSDSVDKILKQL-KTLSVQNKQLKKARD 358 Query: 335 ALLPGLVTGEVAV 347 LLP L+ GE+ V Sbjct: 359 ILLPRLMNGEIVV 371 >tr|C1SLU6|C1SLU6_9BACT Tax_Id=522772 SubName: Full=Restriction endonuclease S subunit;[Denitrovibrio acetiphilus DSM 12809] Length = 408 Score = 92.0 bits (227), Expect = 1e-16 Identities = 47/137 (34%), Positives = 74/137 (54%) Query: 22 GRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVWVTDNAYVCRANDPAE 81 G+ V+GANG I E S P+IV+GRVG+YCGS+ + + WVTDNA + + Sbjct: 33 GKSGVWGANGQIASTNEVLNSDPVIVIGRVGAYCGSIHMAEGNNWVTDNAIQATPKNDTD 92 Query: 82 TRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVLGALDDKIANN 141 + YY L++ ++ GS QPL+ Q + + ++ +A +L +LDDKI N Sbjct: 93 LNFLYYLLKSLNVSRAATGSAQPLITQSGIGVLECKAPSPKIQKEVASILSSLDDKIELN 152 Query: 142 ERVIEAAEALMVAMVGS 158 ++ E E + A+ S Sbjct: 153 RKMNETLEEMARAIFKS 169 >tr|C5DAW6|C5DAW6_GEOSW Tax_Id=471223 SubName: Full=Restriction modification system DNA specificity domain protein;[Geobacillus sp.] Length = 428 Score = 89.7 bits (221), Expect = 5e-16 Identities = 86/349 (24%), Positives = 147/349 (42%), Gaps = 45/349 (12%) Query: 46 IVVGRVGSYCGSVRYCDSDVWVTDNAYVCRAN------DPAETRYWYYA-LQTCRLNEHR 98 + + R G+ G + DV +Y+ R DP +Y + + + +N Sbjct: 71 LCIARTGATTGINTVIEEDVDAVFASYLVRFKLNKEIVDPTFIKYIFKSNMWYGYVNSII 130 Query: 99 AGSGQPLLNQRTLREVSVHVAQAPERRRIAEVLGALDDKIANNERVIEAAEALMVAM--- 155 +GS QP N + + + + E+++IA VL LD KI N ++ + E + A+ Sbjct: 131 SGSAQPGANAQQMSNFKMSIPDLDEQKKIASVLSVLDKKIVLNNKINKTLEEMAQAIFKR 190 Query: 156 ----------------------VGSVDARV-------ALSGLARRSTKLVNPADFDDVV- 185 V S + L L +T V+P + +++ Sbjct: 191 WFVDFEFPNENGKPYKSSGGKFVESESGMIPEGWKEGTLDNLVVINTASVDPKENPEILY 250 Query: 186 AHFSLPAFDAGAHARPVAGASVKSGKFHLSEPCVLFAKLNPRVPRIWNVVRLPPQMALAS 245 H+S+PAFD + + G +KS K+ + L +KLNP R+W+ + + + A++S Sbjct: 251 EHYSIPAFDEQKYPKFEYGREIKSNKYLVRPNSFLVSKLNPTTKRVWDPLCI-TENAISS 309 Query: 246 CEFVVLSPLGVD-TSVLWSALRQPEVSTSLAQLVAGTSGSHQRIGPKDLLDLQV--PDVR 302 EF+ P + S L+ L S L + G++GS QR+ P + L V PD Sbjct: 310 TEFINYLPKDISYQSYLYCMLNSERFSEHLIKHATGSTGSRQRVKPAETLTFNVILPDTE 369 Query: 303 RLGAAQSATITDLGALCHARRGQCAQLAALRDALLPGLVTGEVAVSGGE 351 L + I + + A L +RD LLP L++GE+ V E Sbjct: 370 TLKKFDN-LIRPIREKLKINQINSAVLKDVRDILLPKLMSGEIRVPDAE 417 >tr|A0JTL4|A0JTL4_ARTS2 Tax_Id=290399 SubName: Full=Restriction modification system DNA specificity domain;[Arthrobacter sp.] Length = 390 Score = 89.0 bits (219), Expect = 8e-16 Identities = 108/395 (27%), Positives = 158/395 (40%), Gaps = 51/395 (12%) Query: 1 VRLGEHLEFRSGSCSPPRRAR-GRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVR 59 VR E E R G R G VPVYG NG G GP +++GR G+ V Sbjct: 6 VRSSELFELRYGKALVASGRRPGSVPVYGTNGQTGSHDSPLFRGPGLILGRKGAGHLGVH 65 Query: 60 YCDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVA 119 + D+D WV D AY D + ++ YY ++ LN + G+ P L + + Sbjct: 66 WTDNDYWVIDTAYSLSPRDDVDLKFAYYLIKHVGLNHLKHGTSNPSLTRDAFGAQYFPLP 125 Query: 120 QAPERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGSVDARVALSGLA----RRSTKL 175 + IA L ALDD I +N R I+ E L A+ V+ R+ L R +L Sbjct: 126 PVATQGAIATTLSALDDMIDSNRRKIDLLEELGAAI---VEQRLHLDAYGFPEYERGRRL 182 Query: 176 VNPADFDDVVAHFSLP---AFDAGAHARPVAGASVKSG--------------------KF 212 D V+ S P A +G+ + S++S + Sbjct: 183 ---GDVLRVLETGSRPKGGAAPSGSGVVSLGAESIQSAGVCTTNVFKHIPEEFAARMKRG 239 Query: 213 HLSEPCVLFAKLNPR----VPRIWNVVRLPPQMALASCEFV--VLSPLGVDTSVLWSALR 266 HL E VL K R +P + P A E V V S G+ ++L+ LR Sbjct: 240 HLEEEDVLVYKDGGRPGNFIPHVSAFGYGFPVEEAAINEHVYRVRSSDGISQALLYWLLR 299 Query: 267 QPEVSTSLAQLVAGTSGSHQRIGPKDLLDLQVP-----DVRRLGAAQSATITDLGALCHA 321 P + + + GT + + + DL +P DV L S + + L Sbjct: 300 SPWMDQEMRK--RGTGVAIPGLNSSNFRDLPLPILTETDVEVLNDRLSPVLASMLRL--- 354 Query: 322 RRGQCAQLAALRDALLPGLVTGEVAVSGGELLLAS 356 + +LAALR+ LLP L+TG + V EL + S Sbjct: 355 -GTESGRLAALRNVLLPELLTGRIRVPEAELTIDS 388 >tr|B5Y625|B5Y625_COPPD Tax_Id=309798 SubName: Full=Type I restriction/modification enzyme;[Coprothermobacter proteolyticus] Length = 678 Score = 87.4 bits (215), Expect = 2e-15 Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 6/155 (3%) Query: 1 VRLGEHLEFRSGSCSPPRRA--RGRVPVYGANGPIGFAAEHN--VSGPLIVVGRVGSYCG 56 V LGE + R+G RG+ PV G+NG G+ ++ + G IVVGRVG+YCG Sbjct: 510 VELGELIALRNGISISNTLVSNRGKYPVCGSNGIYGYTDNNDKLLFGETIVVGRVGAYCG 569 Query: 57 SVRYCDSDVWVTDNAYVCRA--NDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREV 114 +V Y D +WVTDNA V D +T+Y YY L + L ++ +GQP ++Q + + Sbjct: 570 NVHYYDVPIWVTDNAIVVTVTNKDKLKTKYLYYFLLSKDLGKYANVTGQPYISQSIISSL 629 Query: 115 SVHVAQAPERRRIAEVLGALDDKIANNERVIEAAE 149 V + ++++I + L + + N R+ E A+ Sbjct: 630 KVPLPPIEKQQKIVDFLNVQFETLTNIRRLKENAK 664 Score = 45.8 bits (107), Expect = 0.008 Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 14/157 (8%) Query: 1 VRLGEHLEFRSG-SCSPPRRARGRVPVY-GANGPIGFAAEHNVSGPLIVVGRVGSYCGSV 58 V L E + + G S + G VPV G P + + N G +I V G+Y G V Sbjct: 341 VSLREICDIQKGTSITKADTVEGNVPVIAGGQEPAYYHNQSNRDGNIITVSASGAYAGFV 400 Query: 59 RYCDSDVWVTDNAYVCRAND--PAETRYWYYALQTCR--LNEHRAGSGQPLLNQRTLREV 114 Y D ++ +D + ++ND A T+Y +Y L++ + L + + G+GQP + L + Sbjct: 401 NYFDIPIFASDCTTI-KSNDEEKALTKYIFYILKSRQEDLYKLQRGAGQPHVYPNDLANI 459 Query: 115 SVHVAQAPERRRIAEVLGALDDKIANNERVIEAAEAL 151 + + P ++ E++ LD + +IE A+ Sbjct: 460 QIPLPPLPVQQ---ELVARLD----KQQAIIEQCNAM 489 >tr|C4XFR2|C4XFR2_MYCFE Tax_Id=496833 SubName: Full=Putative uncharacterized protein;[Mycoplasma fermentans PG18] Length = 172 Score = 87.0 bits (214), Expect = 3e-15 Identities = 41/137 (29%), Positives = 76/137 (55%) Query: 22 GRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVWVTDNAYVCRANDPAE 81 G P +G NG I + + NV I++GRVG+ CG V + +VTDNA + + + Sbjct: 27 GNFPAFGGNGIITYVNKWNVDEDAIIIGRVGANCGCVNITNKKSFVTDNALIFKPKEKNM 86 Query: 82 TRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVLGALDDKIANN 141 R+++Y L LN+ GS QPLL Q L + +++ + ++I+++L +D++I N Sbjct: 87 ARFYFYFLLHLNLNKFHIGSSQPLLTQGILGNIKINIPSLNKCQKISKILDNIDNQIERN 146 Query: 142 ERVIEAAEALMVAMVGS 158 +++ ++ A++ S Sbjct: 147 NSMVQKLQSFEQALIFS 163 >tr|C6BZF1|C6BZF1_DESAD Tax_Id=526222 SubName: Full=Restriction modification system DNA specificity domain protein;[Desulfovibrio salexigens] Length = 415 Score = 84.7 bits (208), Expect = 2e-14 Identities = 46/141 (32%), Positives = 72/141 (51%) Query: 18 RRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVWVTDNAYVCRAN 77 +R G +P+ G++G G+ E V+GP I VGR G+ G V Y D D W + A + Sbjct: 28 QRRVGDIPILGSSGVTGYHNESKVAGPGITVGRSGASIGVVTYSDIDFWPLNTALYVKDF 87 Query: 78 DPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVLGALDDK 137 R+ YY L+ + +GS QP LN+ + + + ++ IA +LG +D+K Sbjct: 88 RGNHPRFAYYFLKQFDFKRYNSGSAQPSLNRNFVHPTKIRIPPLKTQQAIAHILGTIDEK 147 Query: 138 IANNERVIEAAEALMVAMVGS 158 I N R+ E EA+ A+ S Sbjct: 148 IDLNRRMNETLEAMAQAIFKS 168 >tr|Q67N49|Q67N49_SYMTH Tax_Id=2734 SubName: Full=Type I restriction-modification system specificity determinant protein;[Symbiobacterium thermophilum] Length = 400 Score = 82.4 bits (202), Expect = 8e-14 Identities = 45/123 (36%), Positives = 66/123 (53%), Gaps = 1/123 (0%) Query: 18 RRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVWVTDNAYVCRAN 77 + + G VPVYG NGPIG+ + P +++GR G+Y G V S WV D A+ Sbjct: 14 KTSTGSVPVYGTNGPIGWTNKPLCPFPTVIIGRKGAYRG-VHLSPSPCWVIDTAFYISPK 72 Query: 78 DPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVLGALDDK 137 P + R+ YY L T +N +GS P ++ + V V +++IA+VLG LD + Sbjct: 73 QPLDIRWAYYQLLTQDINGMDSGSAIPSTSREEFYRLPVKVPPLAVQKQIADVLGTLDSR 132 Query: 138 IAN 140 IAN Sbjct: 133 IAN 135 >tr|C1PH86|C1PH86_STAAU Tax_Id=1280 SubName: Full=Putative uncharacterized protein;[Staphylococcus aureus] Length = 433 Score = 82.4 bits (202), Expect = 8e-14 Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 2/186 (1%) Query: 165 LSGLARRSTKLVNPADFDDV-VAHFSLPAFDAGAHARPVAGASVKSGKFHLSEPCVLFAK 223 L +A + NP ++V V HFSLPA+D A +KS K+ ++ CVLF+K Sbjct: 236 LKDIASHKKETFNPKKSEEVTVKHFSLPAYDNEEQAIEEEVNKIKSNKWIINNNCVLFSK 295 Query: 224 LNPRVPRIWNVVRLPPQMALASCEFVVL-SPLGVDTSVLWSALRQPEVSTSLAQLVAGTS 282 +NP RIW V ++ +AS EFVV+ SP S +++ + L G++ Sbjct: 296 MNPDTKRIWLPVIDNKKLNVASSEFVVMESPNNKINSFIYNICLNSQFIDYLKANTTGST 355 Query: 283 GSHQRIGPKDLLDLQVPDVRRLGAAQSATITDLGALCHARRGQCAQLAALRDALLPGLVT 342 S QR+ P ++ ++ + S IT R + +L LRD LLP L++ Sbjct: 356 NSRQRVKPTIAVNYKLAIEDSIVKKYSEIITPYMEEMKILRSEIGKLTQLRDTLLPKLMS 415 Query: 343 GEVAVS 348 GE+ +S Sbjct: 416 GELEIS 421 >tr|C7NP00|C7NP00_HALUD Tax_Id=519442 SubName: Full=Restriction modification system DNA specificity domain protein;[Halorhabdus utahensis] Length = 442 Score = 82.0 bits (201), Expect = 1e-13 Identities = 53/151 (35%), Positives = 75/151 (49%), Gaps = 3/151 (1%) Query: 1 VRLGEHLEFRSGSCSPP-RRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVR 59 VRLGE L G P R G VPV+G+NG + +E V P I++GR GS G + Sbjct: 43 VRLGEILTLEYGDNLPSDSRESGTVPVFGSNGQVDTHSEAAVEKPGIILGRKGSI-GEID 101 Query: 60 YCDSDVWVTDNAYVCRANDPAET-RYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHV 118 + D W D Y + + ++ R+ YY LQ +L A S P LN+ + + Sbjct: 102 FSDRPFWPIDTTYYITSEETSQNLRFLYYLLQNIQLERLNAASAIPGLNRNDAYGLKALM 161 Query: 119 AQAPERRRIAEVLGALDDKIANNERVIEAAE 149 A E+R+IA VL +D I +E +IE E Sbjct: 162 PPAEEQRKIASVLYTVDQAIQKSEEIIEQTE 192 >tr|Q879W9|Q879W9_XYLFT Tax_Id=183190 (hsdS)SubName: Full=Type I restriction-modification system specificity determinant;[Xylella fastidiosa] Length = 444 Score = 80.5 bits (197), Expect = 3e-13 Identities = 59/160 (36%), Positives = 80/160 (50%), Gaps = 11/160 (6%) Query: 13 SCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVWVTDNAY 72 S S R +G VPVYG+NGP+G NV GP IV+GR GS+ G V Y +SD++ D Y Sbjct: 251 SLSDANRRQGNVPVYGSNGPVGMHDVANVVGPCIVIGRKGSF-GKVNYSESDLFAIDTTY 309 Query: 73 -VCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVL 131 V + A R+ YY L CRL+ S P L++ V V E+ +IA+ L Sbjct: 310 FVDKKCTKANIRWLYYVLIWCRLDRISKDSAVPGLDRTDALNTLVPVPDGAEQEQIAKQL 369 Query: 132 ----GALDDKIANNERVI----EAAEALMVAMV-GSVDAR 162 ++D I E I E + L+ +V G VD R Sbjct: 370 DIETAEVNDAITKVEEEITLIREYRDRLITDVVTGQVDVR 409 >tr|Q6YRQ7|Q6YRQ7_SYNY3 Tax_Id=1148 SubName: Full=Type I site-specific deoxyribonuclease;[Synechocystis sp.] Length = 394 Score = 80.5 bits (197), Expect = 3e-13 Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 1/138 (0%) Query: 19 RARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVWVTDNAYVCRAND 78 R+ G PVYG+NG IGF + + P I+VGR GS G V + + + W D Y Sbjct: 27 RSGGDYPVYGSNGIIGFHKAYLLDSPNIIVGRKGSV-GEVVWANKNCWAIDTTYYVTLKQ 85 Query: 79 PAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVLGALDDKI 138 R+ Y+ L++ L + + +G P LN+ + + ++ PE+ +IAE+L +D+ I Sbjct: 86 DNSLRFIYWLLKSFDLRKLDSSTGVPGLNRNDVYRIKCNLPSLPEQEKIAEILDTMDEAI 145 Query: 139 ANNERVIEAAEALMVAMV 156 A E I + + +V Sbjct: 146 AKTEECIAKLKKIKAGLV 163 >tr|Q3ARJ1|Q3ARJ1_CHLCH Tax_Id=340177 SubName: Full=Restriction endonuclease S subunits-like;[Chlorobium chlorochromatii] Length = 428 Score = 80.5 bits (197), Expect = 3e-13 Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 3/164 (1%) Query: 187 HFSLPAFDAGAHARPVAGASVKSGKFHLSEPCVLFAKLNP-RVPRIWNVVRLPPQMALAS 245 H+S+P+FD + G ++S K+ C+LF+KLNP + R+W + + A+ S Sbjct: 263 HYSIPSFDNDKNPIKELGKEIQSNKYKAPRYCILFSKLNPHKDKRVWLLQNEVEKNAICS 322 Query: 246 CEFVVLSPLGVD-TSVLWSALRQPEVSTSLAQLVAGTSGSHQRIGPKDLLDLQVPDVRRL 304 EF V+ P+ L+ L + +A V GTSGSHQRI P + D Q P V Sbjct: 323 TEFQVVLPIKRQYLYFLYGWLTLNDNYNEIASGVGGTSGSHQRIDPNTIYDFQCPLVTES 382 Query: 305 GAAQ-SATITDLGALCHARRGQCAQLAALRDALLPGLVTGEVAV 347 + + I L + Q L ALRD LLP L++GEV V Sbjct: 383 VIEKFNIQIKPLFKKQVINQTQIRTLTALRDMLLPKLMSGEVKV 426 >tr|B2IAD5|B2IAD5_XYLF2 Tax_Id=405441 SubName: Full=Restriction modification system DNA specificity domain;[Xylella fastidiosa] Length = 444 Score = 80.5 bits (197), Expect = 3e-13 Identities = 59/160 (36%), Positives = 80/160 (50%), Gaps = 11/160 (6%) Query: 13 SCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVWVTDNAY 72 S S R +G VPVYG+NGP+G NV GP IV+GR GS+ G V Y +SD++ D Y Sbjct: 251 SLSDANRRQGNVPVYGSNGPVGMHDVANVVGPCIVIGRKGSF-GKVNYSESDLFAIDTTY 309 Query: 73 -VCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVL 131 V + A R+ YY L CRL+ S P L++ V V E+ +IA+ L Sbjct: 310 FVDKKCTKANIRWLYYVLIWCRLDRISKDSAVPGLDRTDALNTLVPVPDGAEQEQIAKQL 369 Query: 132 ----GALDDKIANNERVI----EAAEALMVAMV-GSVDAR 162 ++D I E I E + L+ +V G VD R Sbjct: 370 DIETAEVNDAITKVEEEITLIREYRDRLITDVVTGQVDVR 409 >tr|A6B4C6|A6B4C6_VIBPA Tax_Id=419109 SubName: Full=Hypothetical Type I restriction enzyme EcoEIspecificity protein;[Vibrio parahaemolyticus AQ3810] Length = 391 Score = 79.7 bits (195), Expect = 5e-13 Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 5/143 (3%) Query: 22 GRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVWVTDNAYVCRA-NDPA 80 G PVYG NG G + N+SG I++GRVG+ CG+VR +SD+WVTDNA+ + Sbjct: 38 GEFPVYGGNGIAGRYNDFNLSGSNIIIGRVGALCGNVRLVNSDIWVTDNAFFIKEYKVDI 97 Query: 81 ETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVLGAL----DD 136 Y L T L + QP+++ + ++++ + E++RI E + AL D Sbjct: 98 LKEYLAKVLSTLNLGATANKAAQPVISYKGIKDLVIPYPPLDEQKRIVEKIDALLTRIDT 157 Query: 137 KIANNERVIEAAEALMVAMVGSV 159 I + + I A+AL + + V Sbjct: 158 AIEHLQESITLADALYASELNEV 180 >tr|A4VJL0|A4VJL0_PSEU5 Tax_Id=379731 (hsdS)SubName: Full=Type I restriction-modification system, S subunit;[Pseudomonas stutzeri] Length = 527 Score = 79.0 bits (193), Expect = 9e-13 Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 3/137 (2%) Query: 1 VRLGEHLEFRSGS--CSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSV 58 VRL + + SG S G VPVYG NG G NV +V+GRVG YCGS+ Sbjct: 360 VRLQQIVSVSSGDGLVSAKMNTEGSVPVYGGNGVTGHHDRQNVEKETLVIGRVGYYCGSI 419 Query: 59 RYCDSDVWVTDNAYVCRAND-PAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVH 117 + WVTDNA + R ++ + + ++ L+ L E + QP+++ R + + + Sbjct: 420 HLTPASAWVTDNALIVRFSERNIDKSFLFWLLKGTNLKEQENATAQPVISGRKIYPIVLA 479 Query: 118 VAQAPERRRIAEVLGAL 134 + E+RRI L L Sbjct: 480 IPPLAEQRRIVAKLNQL 496 Score = 51.6 bits (122), Expect = 1e-04 Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 8/143 (5%) Query: 19 RARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCG----SVRYCDSDVWVTDNAYVC 74 R G P YGA+G + + + + PL++VG G+ G + WV ++A+V Sbjct: 110 RKPGPYPYYGASGVVDYVSAYIFDEPLVLVGEDGAKWGVGERTAFSITGKTWVNNHAHVL 169 Query: 75 R-ANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRI---AEV 130 R D Y +L L++ G P LNQ L + + + E+ RI + Sbjct: 170 RPKRDAVCDDYLVISLTAQDLSQFITGMTVPKLNQARLTSIGIPLPPLAEQHRIVAKVDE 229 Query: 131 LGALDDKIANNERVIEAAEALMV 153 L AL D++ + E+A AL+V Sbjct: 230 LMALCDRLEAQQADAESAHALLV 252 >tr|Q9F702|Q9F702_STRTR Tax_Id=1308 SubName: Full=Putative HsdS;[Streptococcus thermophilus] Length = 402 Score = 78.6 bits (192), Expect = 1e-12 Identities = 82/343 (23%), Positives = 143/343 (41%), Gaps = 45/343 (13%) Query: 45 LIVVGRVGSYCGSVRYCDSDVWVTDNAYVCRANDPAET--RYWYYALQTCRLNEHRAGSG 102 + ++ G+ +V + D + D+ V ND ++ ++ YY LQT + Sbjct: 64 IFLISAAGTIGKTVIFDGEDSYFQDSNIVWIENDESKVTNQFLYYFLQTNPFITTNGSTI 123 Query: 103 QPLLNQRTLREVSV-HVAQAPERRRIAEVLGALDDKIANNERVIEAAEALMVA------- 154 + L N LR+ + +V ++ +I ++LG LD KI N ++ + EA+ Sbjct: 124 KRLYNDN-LRDTKIPNVPSIQQQNQITDILGTLDKKIQINNQINQELEAMAKTLYDYWFV 182 Query: 155 ------------------MVGSVDAR---------VALSGLARRSTKLVNPADF-DDVVA 186 MV + + + LS L + + NP F ++ Sbjct: 183 QFDFPDQNGKPYKSSGGKMVYNPELKREIPEGWGAEKLSSLLKIGKETTNPKKFPNEEFK 242 Query: 187 HFSLPAFDAGAHARPVAGASVKSGKFHLSEPCVLFAKLNPRVPR-IWNVVRLPPQMALAS 245 ++S+P FD G S+KS KF + + +L +KLNP R I+N+ + A+AS Sbjct: 243 YYSIPEFDTTGTYSLERGESIKSNKFKVEKNDLLVSKLNPWFNRVIYNL----EENAIAS 298 Query: 246 CEFVVLSPLG-VDTSVLWSALRQPEVSTSLAQLVAGTSGSHQRIGPKDLLDLQVPDVRRL 304 EF+V + + L+ E + GTS SH+R+ P ++ Q+P + Sbjct: 299 TEFIVWKTFNRFEKNFLYQVATGKEFIEYCTRFATGTSNSHKRVSPDIMVGFQIPFEKTH 358 Query: 305 GAAQSATITDLGALCHARRGQCAQLAALRDALLPGLVTGEVAV 347 I + Q +L LRD +LP L+ G+V V Sbjct: 359 IQKFGEIIDSIRTQVLQNNEQNQELTQLRDWILPMLMNGQVKV 401 >tr|B4VXC6|B4VXC6_9CYAN Tax_Id=118168 SubName: Full=Type I restriction modification DNA specificity domain protein;[Microcoleus chthonoplastes PCC 7420] Length = 506 Score = 77.8 bits (190), Expect = 2e-12 Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 3/150 (2%) Query: 1 VRLGEHLEFRSGSCSPPRRARGR-VPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVR 59 V LG+ L F G P R G PVYG+NG +G+ E G +++GR GS G V Sbjct: 11 VTLGDLLRFNYGKSLPERARSGAGFPVYGSNGIVGYHDEPLTDGETLIIGRKGSV-GEVH 69 Query: 60 YCDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVA 119 + + D Y TRYW+Y L+ L+E + P LN++ V +H++ Sbjct: 70 FSPGACFPIDTTYYVDQFHGMPTRYWFYQLKNLGLSELDKATAIPSLNRKDAYRVQIHLS 129 Query: 120 QAPERRRIAEVLGALDDKI-ANNERVIEAA 148 E++RIA+ L AL ++ A +R+I + Sbjct: 130 PLNEQKRIADKLDALLARVDACRDRLIRVS 159 >tr|A3WLG9|A3WLG9_9GAMM Tax_Id=314276 SubName: Full=Type I restriction-modification system, S subunit, EcoA family protein;[Idiomarina baltica OS145] Length = 663 Score = 77.8 bits (190), Expect = 2e-12 Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 9/189 (4%) Query: 166 SGLARRSTKLVNPA-DFDDVVAHFSLPAFDAGAHARPVAGASVKSGKFHLSEPCVLFAKL 224 S +AR T V PA + + + H+S+PAFD G G +KS K+ + +L +KL Sbjct: 279 SNIARLDTTSVKPAKEPEKIWEHYSIPAFDDGMSPAFDLGVDIKSNKYRVFPASILVSKL 338 Query: 225 NPRVPRIWNVVRLPPQMALASCEFVVLSPLGVD-TSVLWSALRQPEVSTSLAQLVAGTSG 283 NP PR W A+ S EF+ P+ + + + ++ + V G++G Sbjct: 339 NPHFPRTWLPDVFDSNAAICSTEFMQFVPIKPNQRAFVAGVVKSESFQNGIMMRVTGSTG 398 Query: 284 SHQRIGPKDLLDLQV----PDVRRLGAAQSATITDLGALCHARRGQCAQLAALRDALLPG 339 S QR PK + +++V ++R + + A + A + + LA +RD LLP Sbjct: 399 SRQRAQPKQVAEMEVLLPSEELRNIYSVLIAPQLESQA---SNIREALNLADVRDTLLPK 455 Query: 340 LVTGEVAVS 348 L++GE+ V+ Sbjct: 456 LLSGELQVN 464 >tr|Q888D9|Q888D9_PSESM Tax_Id=323 SubName: Full=Type I restriction-modification system, S subunit;[Pseudomonas syringae pv. tomato] Length = 422 Score = 77.0 bits (188), Expect = 3e-12 Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 7/222 (3%) Query: 1 VRLGEHLEFRSGSCSPPR-RARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVR 59 + G+ + + G P + R G VP+ G+ G G+ GP + +GR G+ G Sbjct: 8 ITFGDFVAIQRGHDLPDQNRKLGSVPILGSFGITGYHDTVKAKGPGVTIGRSGASFGVAA 67 Query: 60 YCDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVA 119 Y D D W + A ++ +Y ++ + +GS QP LN+ L VS+ V Sbjct: 68 YTDQDYWPLNTALYVTDFKGNHPKFVFYFMRVFDFSGFNSGSAQPSLNRNNLYPVSIRVP 127 Query: 120 QAPERRRIAEVLGALDDKIA----NNERVIEAAEALMVAMVGSVD-ARVALSGLARRSTK 174 Q E+ I+++L ALDD+IA N + A+AL + D R ++GL Sbjct: 128 QPNEQMAISKLLAALDDRIALLVETNTTLESIAQALFKSWFVDFDPVRAKVAGLEPEGMD 187 Query: 175 LVNPADFDDVVAHFSLPAFDAGAHARPVAG-ASVKSGKFHLS 215 A F D L G +A A V GK + S Sbjct: 188 AATAALFPDNFEESELGLVPTGWIIESIANVAEVVKGKSYKS 229 >tr|A9A7U6|A9A7U6_METM6 Tax_Id=444158 SubName: Full=Restriction modification system DNA specificity domain;[Methanococcus maripaludis] Length = 397 Score = 76.6 bits (187), Expect = 4e-12 Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 2/142 (1%) Query: 3 LGEHLEFRSGSCSPPR-RARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYC 61 +GE + F+ G P R G PV +NG +G+ E+ V + +GR G+ G Y Sbjct: 22 IGELVTFQRGHDLPVNSRKNGIYPVVASNGIVGYHNEYKVENEGLTIGRSGNL-GEPFYV 80 Query: 62 DSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQA 121 + W + + + ++ YY L+T L ++ +GS P LN+ + + V V Sbjct: 81 STSFWPLNTTLYVKKFHNSHPKFMYYFLKTLDLKKYNSGSAVPSLNRNYIHPIKVAVPPL 140 Query: 122 PERRRIAEVLGALDDKIANNER 143 E+++IA++L +LDDKI NN + Sbjct: 141 HEQQKIAQILSSLDDKIENNNQ 162 >tr|B4SN97|B4SN97_STRM5 Tax_Id=391008 SubName: Full=Restriction modification system DNA specificity domain;[Stenotrophomonas maltophilia] Length = 364 Score = 76.3 bits (186), Expect = 6e-12 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 1/137 (0%) Query: 19 RARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVWVTDNAYVCRAND 78 R +G VP+Y ANG G E ++GP ++ GR G+ G V YC+ W + A Sbjct: 32 RNKGEVPIYAANGQNGSHDEVKINGPGVITGRSGTI-GRVHYCEGGFWPLNTALYVMDFH 90 Query: 79 PAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVLGALDDKI 138 R+ YY L +L G+G P LN+ + + + + PE++RIA +L D Sbjct: 91 GNHPRWVYYMLSAFKLERFSEGAGVPTLNRNLVHDELIPLPPLPEQKRIAAILDKADAIR 150 Query: 139 ANNERVIEAAEALMVAM 155 ++ I+ A+ L+ A+ Sbjct: 151 RKRQQAIQLADDLLRAV 167 >tr|A6L6I2|A6L6I2_BACV8 Tax_Id=435590 SubName: Full=Type I restriction endonuclease S subunit;[Bacteroides vulgatus] Length = 358 Score = 75.9 bits (185), Expect = 7e-12 Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 2/136 (1%) Query: 20 ARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVWVTDNAYVCRANDP 79 + G V +YG+ G IG + + +++V RVG+ G ++ VTDN + A + Sbjct: 46 SNGTVALYGSTGIIGMTRLASYNEEIVLVARVGANAGQLQITTIPCGVTDNTLIINAKE- 104 Query: 80 AETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVLGALDDKIA 139 RY YY LQ LN GSGQPL+ L+++ + + ER +I +L LD++IA Sbjct: 105 -WNRYIYYYLQHYNLNRLVFGSGQPLITGSMLKKLKIIYGEESERNKIVNLLCLLDERIA 163 Query: 140 NNERVIEAAEALMVAM 155 ++IE + L A+ Sbjct: 164 TQNKIIEDLKKLKSAI 179 Score = 45.1 bits (105), Expect = 0.014 Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 28 GANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVWVTDNAY-VCRANDPAETRYWY 86 G P G+ +NV I + G+ CG V++ S W + Y + D + Y Y Sbjct: 222 GGTEPSGYYDNYNVEASTISISEGGNSCGYVQFNTSPFWSGGHCYSIQNIADKVDNMYLY 281 Query: 87 YALQTCR--LNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVLGALDDKIANNERV 144 + L++ + + R GSG P + ++ L + V + + +I+ L +L+ K ER+ Sbjct: 282 HYLKSNEDAIMKLRIGSGLPNIQKKDLAMFKIIVPKIEWQIKISTFLSSLERKAEIEERI 341 >tr|Q2BNA9|Q2BNA9_9GAMM Tax_Id=207954 SubName: Full=Putative type I restriction enzyme, S subunit;[Neptuniibacter caesariensis] Length = 394 Score = 75.9 bits (185), Expect = 7e-12 Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 2/150 (1%) Query: 9 FRSGSC--SPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVW 66 FRSG S G PVYG NG G+ +E+N G ++GR G+ CG++ + + + Sbjct: 31 FRSGKFIRSEDINKDGAYPVYGGNGLRGYTSEYNHEGSYALIGRQGALCGNMNFSNGKAF 90 Query: 67 VTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRR 126 T++A +AN+ +T + YY L + L ++ S QP L+ L E+ A E+ Sbjct: 91 FTEHAIAVQANEKNDTLFLYYKLGSMNLGQYSGQSAQPGLSVNKLSELETFTAGKVEQTA 150 Query: 127 IAEVLGALDDKIANNERVIEAAEALMVAMV 156 I LD I +++ + L AM+ Sbjct: 151 IGNYFHKLDTLINQHQQKHDKLSNLKKAML 180 >tr|Q11PS5|Q11PS5_CYTH3 Tax_Id=269798 (hsdS)SubName: Full=Type I site-specific deoxyribonuclease S subunit; EC=3.1.21.3;[Cytophaga hutchinsonii] Length = 303 Score = 75.5 bits (184), Expect = 1e-11 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 6/166 (3%) Query: 3 LGEHLEFRSGSCSPPRRAR-----GRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGS 57 LGE E ++G + G P YG NG G+ +N G ++GR G+ CG+ Sbjct: 31 LGEICEMQAGKFVSASEIKEQHFDGLFPCYGGNGLRGYTKSYNYDGKYSLIGRQGALCGN 90 Query: 58 VRYCDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVH 117 V + + T++A V + T + +Y L LN+ G QP L+ + L +V Sbjct: 91 VNFANGKFHATEHAVVVTPLNGINTVWMFYLLTNLNLNQFATGMAQPGLSVQNLEKVEST 150 Query: 118 VAQA-PERRRIAEVLGALDDKIANNERVIEAAEALMVAMVGSVDAR 162 + +A E+ +IA L +D +I+ ++IE + L + + + +R Sbjct: 151 IPKAIDEQEKIASFLTLIDGRISTQNKIIEELKLLKIVVSQKIFSR 196 >tr|Q3SFH5|Q3SFH5_THIDA Tax_Id=292415 SubName: Full=Putative restriction endonuclease S subunit;[Thiobacillus denitrificans] Length = 400 Score = 74.7 bits (182), Expect = 2e-11 Identities = 81/371 (21%), Positives = 148/371 (39%), Gaps = 37/371 (9%) Query: 10 RSGSCSPPRRAR--GRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVWV 67 +SG P + G PVYG NG G+ G I++GR G+ CG++ Y + W Sbjct: 24 KSGEAIPGESIKETGDYPVYGGNGFRGYTNSFTHEGERILIGRQGALCGNINYAEGKFWA 83 Query: 68 TDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRI 127 T++A V ET + L+ LN++ + QP + + + + V E+RRI Sbjct: 84 TEHAIVATPKTNFETAWLGETLRVMNLNQYSQSAAQPGIAVEVVENLVIAVPPEGEQRRI 143 Query: 128 AEVLGALDDKIANNERVIEAAE--ALMVAMVGSVDARVALSGLARRSTKLVNPADF-DDV 184 A+ L L I ++ ++E + L+ +V A + GL + + + + + ++ Sbjct: 144 ADSLHQLSAPI--DKLILEKQKLLTLLTEKRRTVIADFLIKGLNKDTPRRDSDIPWLGEI 201 Query: 185 VAHFSL-----------PAFDAG-------AHARPVAGASVKSGKFHLSEPCVLFAKLNP 226 AH+ + D+G +H V + K ++E + + Sbjct: 202 PAHWKVERAKWLFTERDDRSDSGDEELLTVSHLTGVTSRAEKDVNMFMAESLEGYKRCEA 261 Query: 227 R---VPRIW---NVVRLPPQMALASCEFVVLSPLG-VDTSVLWSALRQPEVSTSLAQLVA 279 + +W + + Q + S + V P+ +D + +R P + + Sbjct: 262 GDLVINTLWAWMGAMGIARQPGIVSPAYNVYQPVAQLDPEYIDLLVRTPRFVEEITRYSK 321 Query: 280 GTSGSHQRIGPKDLLDLQVP-----DVRRLGAAQSATITDLGALCHARRGQCAQLAALRD 334 G S R+ P+ L + +P + R + A A L AL A L R Sbjct: 322 GVWSSRLRLYPEGLYEAWLPVPPLDEQRDIVARVQAETRKLDALAEATERTVTVLQERRS 381 Query: 335 ALLPGLVTGEV 345 AL+ VTG++ Sbjct: 382 ALISAAVTGQL 392 >tr|A6GSS5|A6GSS5_9BURK Tax_Id=391597 SubName: Full=Putative uncharacterized protein;[Limnobacter sp. MED105] Length = 428 Score = 74.7 bits (182), Expect = 2e-11 Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 9/150 (6%) Query: 22 GRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVWVTDNAYVCRANDPAE 81 G+ PVYG NG GF E G +++GR G+ CG+V + + W T++A V N + Sbjct: 271 GKYPVYGGNGLRGFTTEKTHDGEYLLIGRQGALCGNVHHVKGEFWATEHAVVVTLNTDID 330 Query: 82 TRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVL----GALDDK 137 +R+ +Y L+ L ++ + QP L+ + + + V E++ I++ L L+D Sbjct: 331 SRWAFYMLRFMDLGQYSLAAAQPGLSVEKIVGLKLPVPSCHEQKAISDHLDKEMARLEDL 390 Query: 138 IANNERVIE-----AAEALMVAMVGSVDAR 162 I + + IE A + A++G +D R Sbjct: 391 INHTTKEIELLRELRAATIADAVLGRIDVR 420 >tr|B3ELH4|B3ELH4_CHLPB Tax_Id=331678 SubName: Full=Restriction modification system DNA specificity domain;[Chlorobium phaeobacteroides] Length = 430 Score = 74.3 bits (181), Expect = 2e-11 Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 6/144 (4%) Query: 1 VRLGEHLEFRSGSCSPPRRA-----RGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYC 55 V +G+ +F SG P A VPVYG NG +G++A+ ++ ++++GRVG YC Sbjct: 251 VEIGDVFKFTSGKTKPKDTAPEPSVERTVPVYGGNGVLGYSAQSLLNEDVLILGRVGEYC 310 Query: 56 GSVRYCDSDVWVTDNAYVCRANDPAETR-YWYYALQTCRLNEHRAGSGQPLLNQRTLREV 114 G WVTDNA + + R Y LN++ GQPL+ Q + V Sbjct: 311 GCAHLTKPVSWVTDNALYAKEEKRSVNRSYARTHFAHLNLNQYSNKMGQPLITQGIINRV 370 Query: 115 SVHVAQAPERRRIAEVLGALDDKI 138 + E+ +A LD +I Sbjct: 371 KFGLPSREEQDELANAFETLDTRI 394 >tr|Q11PS6|Q11PS6_CYTH3 Tax_Id=269798 (hsdS)SubName: Full=Type I site-specific deoxyribonuclease S subunit; EC=3.1.21.3;[Cytophaga hutchinsonii] Length = 354 Score = 73.9 bits (180), Expect = 3e-11 Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 6/156 (3%) Query: 3 LGEHLEFRSGSCSPPRRAR-----GRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGS 57 LGE E ++G + G P YG NG G+ +N G ++GR G+ CG+ Sbjct: 15 LGEICEMQAGKFVSASEIKEQHFDGLFPCYGGNGLRGYTKSYNYDGKYSLIGRQGALCGN 74 Query: 58 VRYCDSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVH 117 V + + T++A V + T + +Y L LN+ G QP L+ + L +V Sbjct: 75 VNFANGKFHATEHAVVVTPLNGINTVWMFYLLTNLNLNQFATGMAQPGLSVQNLEKVEST 134 Query: 118 VAQA-PERRRIAEVLGALDDKIANNERVIEAAEALM 152 + +A E+ +IA L +D +I+ ++I+ E L+ Sbjct: 135 IPKAIDEQEKIASFLTLIDGRISTQNKIIKELELLI 170 Score = 48.1 bits (113), Expect = 0.002 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 3/114 (2%) Query: 28 GANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVWVTDNAY-VCRANDPAETRYWY 86 G P G+ +++N G I + G+ CG V++ D W + Y + N +Y Y Sbjct: 218 GGITPSGYYSQYNCVGNTISISEGGNSCGYVQFNDKKFWSGGHCYTLSEINAEISNKYLY 277 Query: 87 YALQTCR--LNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVLGALDDKI 138 Y ++ + R GSG P + ++ L + +V + ++ +I++ L L +KI Sbjct: 278 YFMKFSENLIMSLRVGSGLPNIQKKDLEKFNVAFPEINQQYQISKFLDLLTEKI 331 >tr|C6BT24|C6BT24_DESAD Tax_Id=526222 SubName: Full=Restriction modification system DNA specificity domain protein;[Desulfovibrio salexigens] Length = 400 Score = 73.2 bits (178), Expect = 5e-11 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 1/150 (0%) Query: 13 SCSPPRRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYCDSDVWVTDNAY 72 S S + +P+ G G G+ + GP VVGR G+ G+ Y ++ W D Y Sbjct: 16 SPSSTKAEESTIPIIGTGGQTGWGKDSLFEGPATVVGRKGTL-GNPLYVETPFWPIDTTY 74 Query: 73 VCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQAPERRRIAEVLG 132 ++ YY+L C L + +G P +N+ L + + + P++R+IA++L Sbjct: 75 AVLPYKNIHAKWLYYSLADCDLEKLNEATGVPSINRDYLGRIKISFVEFPQQRKIAKILT 134 Query: 133 ALDDKIANNERVIEAAEALMVAMVGSVDAR 162 +D++I E +I E++ M+ + R Sbjct: 135 TVDNQIEKTEELIAKYESVKQGMMQDLFTR 164 >tr|Q1QC71|Q1QC71_PSYCK Tax_Id=335284 SubName: Full=Restriction modification system DNA specificity domain;[Psychrobacter cryohalolentis] Length = 419 Score = 72.8 bits (177), Expect = 6e-11 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 2/150 (1%) Query: 3 LGEHLEFRSGSCSPP-RRARGRVPVYGANGPIGFAAEHNVSGPLIVVGRVGSYCGSVRYC 61 +GE L R G RG+ P++G G +G+A++ P +++GR GS RY Sbjct: 27 IGEALTIRHGKDQKQVESTRGQYPIFGTGGQMGWASDFLYDKPSVLIGRKGSI-NKPRYI 85 Query: 62 DSDVWVTDNAYVCRANDPAETRYWYYALQTCRLNEHRAGSGQPLLNQRTLREVSVHVAQA 121 + W D + + ++ + ++ +Y + SG P LN T+ V + V + Sbjct: 86 NVPFWTVDTLFYSQVHNGYDEKFMFYKFCLIDWMNYNEASGVPSLNASTISNVKISVPKK 145 Query: 122 PERRRIAEVLGALDDKIANNERVIEAAEAL 151 PE+ IA L +D+ I + E++I EA+ Sbjct: 146 PEQTAIATALSDIDNLIQSLEKLIAKKEAI 175 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.320 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 2,672,031,668 Number of extensions: 107503565 Number of successful extensions: 255915 Number of sequences better than 10.0: 500 Number of HSP's gapped: 257102 Number of HSP's successfully gapped: 541 Length of query: 361 Length of database: 3,846,993,858 Length adjustment: 139 Effective length of query: 222 Effective length of database: 2,279,740,641 Effective search space: 506102422302 Effective search space used: 506102422302 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 81 (35.8 bits)