BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_1993 (180 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HLX9|B2HLX9_MYCMM Tax_Id=216594 SubName: Full=Conserved hyp... 206 7e-52 tr|A0PT75|A0PT75_MYCUA Tax_Id=362242 SubName: Full=Conserved hyp... 203 8e-51 tr|Q7TY16|Q7TY16_MYCBO Tax_Id=1765 SubName: Full=POSSIBLE CONSER... 82 2e-14 tr|O07218|O07218_MYCTU Tax_Id=1773 SubName: Full=POSSIBLE CONSER... 82 2e-14 tr|C6DLI8|C6DLI8_MYCTK Tax_Id=478434 SubName: Full=Conserved mem... 82 2e-14 tr|C1AFH8|C1AFH8_MYCBT Tax_Id=561275 SubName: Full=Putative unch... 82 2e-14 tr|A5U671|A5U671_MYCTA Tax_Id=419947 SubName: Full=Putative cons... 82 2e-14 tr|A1KM57|A1KM57_MYCBP Tax_Id=410289 SubName: Full=Possible cons... 82 2e-14 tr|A5WQX1|A5WQX1_MYCTF Tax_Id=336982 SubName: Full=Conserved mem... 82 2e-14 tr|A4KJZ9|A4KJZ9_MYCTU Tax_Id=395095 SubName: Full=Conserved mem... 82 2e-14 tr|A2VL59|A2VL59_MYCTU Tax_Id=348776 SubName: Full=Putative unch... 82 2e-14 tr|Q73W25|Q73W25_MYCPA Tax_Id=1770 SubName: Full=Putative unchar... 80 1e-13 tr|A0QIQ2|A0QIQ2_MYCA1 Tax_Id=243243 SubName: Full=LysM domain p... 79 2e-13 tr|Q49846|Q49846_MYCLE Tax_Id=1769 SubName: Full=Possible conser... 69 2e-10 tr|B8ZQU6|B8ZQU6_MYCLB Tax_Id=561304 SubName: Full=Possible cons... 69 2e-10 tr|A1T7V5|A1T7V5_MYCVP Tax_Id=350058 SubName: Full=Peptidoglycan... 64 9e-09 tr|Q1BA07|Q1BA07_MYCSS Tax_Id=164756 SubName: Full=Peptidoglycan... 61 5e-08 tr|A4TCN8|A4TCN8_MYCGI Tax_Id=350054 SubName: Full=Peptidoglycan... 61 5e-08 tr|A3PYG7|A3PYG7_MYCSJ Tax_Id=164757 SubName: Full=Peptidoglycan... 61 5e-08 tr|A1UF05|A1UF05_MYCSK Tax_Id=189918 SubName: Full=Peptidoglycan... 61 5e-08 tr|B1MCZ4|B1MCZ4_MYCA9 Tax_Id=561007 SubName: Full=Putative unch... 59 2e-07 tr|A0QVY7|A0QVY7_MYCS2 Tax_Id=246196 SubName: Full=DNA-damage-in... 59 2e-07 tr|Q4GWU1|Q4GWU1_MYCSM Tax_Id=1772 (ddiG)SubName: Full=DNA-damag... 59 2e-07 tr|A1SND0|A1SND0_NOCSJ Tax_Id=196162 SubName: Full=Peptidoglycan... 38 0.55 tr|C6WAB7|C6WAB7_ACTMD Tax_Id=446462 SubName: Full=Peptidoglycan... 36 2.1 tr|C0ZYQ0|C0ZYQ0_RHOE4 Tax_Id=234621 SubName: Full=Putative unch... 35 2.7 tr|C3JK95|C3JK95_RHOER Tax_Id=596309 SubName: Full=DNA-damage-in... 35 2.7 >tr|B2HLX9|B2HLX9_MYCMM Tax_Id=216594 SubName: Full=Conserved hypothetical membrane protein;[Mycobacterium marinum] Length = 180 Score = 206 bits (525), Expect = 7e-52 Identities = 118/180 (65%), Positives = 118/180 (65%) Query: 1 MTLMXXXXXXXXXXXXRLGTREARRFIRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXX 60 MTLM RLGTREARRFIRGPVGGAIHEPVTGRGRLAT Sbjct: 1 MTLMQAVQPVSPAVPVRLGTREARRFIRGPVGGAIHEPVTGRGRLATSRRVRPSRPAVAP 60 Query: 61 LSYRGTGVALSATAHRRRPASXXXXXXXXXXXXXXXXXXXXVAHFGEMANGGSANVSPIS 120 LSYRGTGVALSATAHRRRPAS VAHFGEMANGGSANVSPIS Sbjct: 61 LSYRGTGVALSATAHRRRPASVATTVGLALLAAIITLWLGLVAHFGEMANGGSANVSPIS 120 Query: 121 SGVPDRLAVVRVDAGESLXXXXXXXXXXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 SGVPDRLAVVRVDAGESL ERIRELNALGSSMPASGQTLIAPVG Sbjct: 121 SGVPDRLAVVRVDAGESLQDVAARVAPDAPVRQVVERIRELNALGSSMPASGQTLIAPVG 180 >tr|A0PT75|A0PT75_MYCUA Tax_Id=362242 SubName: Full=Conserved hypothetical membrane protein;[Mycobacterium ulcerans] Length = 180 Score = 203 bits (516), Expect = 8e-51 Identities = 115/180 (63%), Positives = 116/180 (64%) Query: 1 MTLMXXXXXXXXXXXXRLGTREARRFIRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXX 60 MTLM RLGTREARRFIRGPVGG IHEPVTGRGRLAT Sbjct: 1 MTLMQAVQPVSPAVPVRLGTREARRFIRGPVGGTIHEPVTGRGRLATSRRVRPSRPAVAP 60 Query: 61 LSYRGTGVALSATAHRRRPASXXXXXXXXXXXXXXXXXXXXVAHFGEMANGGSANVSPIS 120 LSYRGTGVALSATAHRRRPAS VAHFGEMANGGSANVSPIS Sbjct: 61 LSYRGTGVALSATAHRRRPASVATTVGLTLLAAIITLWLGLVAHFGEMANGGSANVSPIS 120 Query: 121 SGVPDRLAVVRVDAGESLXXXXXXXXXXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 SGVPDRL VVRVDAGESL ERIRELNALGSSMPASGQTL+APVG Sbjct: 121 SGVPDRLTVVRVDAGESLQDVAARVAPDAPVRQVVERIRELNALGSSMPASGQTLVAPVG 180 >tr|Q7TY16|Q7TY16_MYCBO Tax_Id=1765 SubName: Full=POSSIBLE CONSERVED MEMBRANE PROTEIN;[Mycobacterium bovis] Length = 165 Score = 82.4 bits (202), Expect = 2e-14 Identities = 60/155 (38%), Positives = 69/155 (44%), Gaps = 5/155 (3%) Query: 27 IRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXXLSYRGTGVALSATAHRRRPASXXXXX 86 +RGP+ G P R A L Y TGV +S T H RP Sbjct: 15 LRGPLDG----PRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTV 70 Query: 87 XXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSG-VPDRLAVVRVDAGESLXXXXXXX 145 VA FG+M GGSA+ S S+G VPDRLAVVRV+ GESL Sbjct: 71 GLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLHDVAVRV 130 Query: 146 XXXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 +RIRELN L + A GQTLIAPVG Sbjct: 131 APNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165 >tr|O07218|O07218_MYCTU Tax_Id=1773 SubName: Full=POSSIBLE CONSERVED MEMBRANE PROTEIN; SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis] Length = 165 Score = 82.4 bits (202), Expect = 2e-14 Identities = 60/155 (38%), Positives = 69/155 (44%), Gaps = 5/155 (3%) Query: 27 IRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXXLSYRGTGVALSATAHRRRPASXXXXX 86 +RGP+ G P R A L Y TGV +S T H RP Sbjct: 15 LRGPLDG----PRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTV 70 Query: 87 XXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSG-VPDRLAVVRVDAGESLXXXXXXX 145 VA FG+M GGSA+ S S+G VPDRLAVVRV+ GESL Sbjct: 71 GLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRV 130 Query: 146 XXXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 +RIRELN L + A GQTLIAPVG Sbjct: 131 APNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165 >tr|C6DLI8|C6DLI8_MYCTK Tax_Id=478434 SubName: Full=Conserved membrane protein;[Mycobacterium tuberculosis] Length = 165 Score = 82.4 bits (202), Expect = 2e-14 Identities = 60/155 (38%), Positives = 69/155 (44%), Gaps = 5/155 (3%) Query: 27 IRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXXLSYRGTGVALSATAHRRRPASXXXXX 86 +RGP+ G P R A L Y TGV +S T H RP Sbjct: 15 LRGPLDG----PRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTV 70 Query: 87 XXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSG-VPDRLAVVRVDAGESLXXXXXXX 145 VA FG+M GGSA+ S S+G VPDRLAVVRV+ GESL Sbjct: 71 GLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRV 130 Query: 146 XXXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 +RIRELN L + A GQTLIAPVG Sbjct: 131 APNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165 >tr|C1AFH8|C1AFH8_MYCBT Tax_Id=561275 SubName: Full=Putative uncharacterized protein;[Mycobacterium bovis] Length = 165 Score = 82.4 bits (202), Expect = 2e-14 Identities = 60/155 (38%), Positives = 69/155 (44%), Gaps = 5/155 (3%) Query: 27 IRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXXLSYRGTGVALSATAHRRRPASXXXXX 86 +RGP+ G P R A L Y TGV +S T H RP Sbjct: 15 LRGPLDG----PRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTV 70 Query: 87 XXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSG-VPDRLAVVRVDAGESLXXXXXXX 145 VA FG+M GGSA+ S S+G VPDRLAVVRV+ GESL Sbjct: 71 GLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLHDVAVRV 130 Query: 146 XXXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 +RIRELN L + A GQTLIAPVG Sbjct: 131 APNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165 >tr|A5U671|A5U671_MYCTA Tax_Id=419947 SubName: Full=Putative conserved membrane protein;[Mycobacterium tuberculosis] Length = 165 Score = 82.4 bits (202), Expect = 2e-14 Identities = 60/155 (38%), Positives = 69/155 (44%), Gaps = 5/155 (3%) Query: 27 IRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXXLSYRGTGVALSATAHRRRPASXXXXX 86 +RGP+ G P R A L Y TGV +S T H RP Sbjct: 15 LRGPLDG----PRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTV 70 Query: 87 XXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSG-VPDRLAVVRVDAGESLXXXXXXX 145 VA FG+M GGSA+ S S+G VPDRLAVVRV+ GESL Sbjct: 71 GLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRV 130 Query: 146 XXXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 +RIRELN L + A GQTLIAPVG Sbjct: 131 APNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165 >tr|A1KM57|A1KM57_MYCBP Tax_Id=410289 SubName: Full=Possible conserved membrane protein;[Mycobacterium bovis] Length = 165 Score = 82.4 bits (202), Expect = 2e-14 Identities = 60/155 (38%), Positives = 69/155 (44%), Gaps = 5/155 (3%) Query: 27 IRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXXLSYRGTGVALSATAHRRRPASXXXXX 86 +RGP+ G P R A L Y TGV +S T H RP Sbjct: 15 LRGPLDG----PRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTV 70 Query: 87 XXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSG-VPDRLAVVRVDAGESLXXXXXXX 145 VA FG+M GGSA+ S S+G VPDRLAVVRV+ GESL Sbjct: 71 GLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLHDVAVRV 130 Query: 146 XXXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 +RIRELN L + A GQTLIAPVG Sbjct: 131 APNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165 >tr|A5WQX1|A5WQX1_MYCTF Tax_Id=336982 SubName: Full=Conserved membrane protein;[Mycobacterium tuberculosis] Length = 165 Score = 82.4 bits (202), Expect = 2e-14 Identities = 60/155 (38%), Positives = 69/155 (44%), Gaps = 5/155 (3%) Query: 27 IRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXXLSYRGTGVALSATAHRRRPASXXXXX 86 +RGP+ G P R A L Y TGV +S T H RP Sbjct: 15 LRGPLDG----PRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTV 70 Query: 87 XXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSG-VPDRLAVVRVDAGESLXXXXXXX 145 VA FG+M GGSA+ S S+G VPDRLAVVRV+ GESL Sbjct: 71 GLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRV 130 Query: 146 XXXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 +RIRELN L + A GQTLIAPVG Sbjct: 131 APNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165 >tr|A4KJZ9|A4KJZ9_MYCTU Tax_Id=395095 SubName: Full=Conserved membrane protein;[Mycobacterium tuberculosis str. Haarlem] Length = 165 Score = 82.4 bits (202), Expect = 2e-14 Identities = 60/155 (38%), Positives = 69/155 (44%), Gaps = 5/155 (3%) Query: 27 IRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXXLSYRGTGVALSATAHRRRPASXXXXX 86 +RGP+ G P R A L Y TGV +S T H RP Sbjct: 15 LRGPLDG----PRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTV 70 Query: 87 XXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSG-VPDRLAVVRVDAGESLXXXXXXX 145 VA FG+M GGSA+ S S+G VPDRLAVVRV+ GESL Sbjct: 71 GLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRV 130 Query: 146 XXXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 +RIRELN L + A GQTLIAPVG Sbjct: 131 APNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165 >tr|A2VL59|A2VL59_MYCTU Tax_Id=348776 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis C] Length = 165 Score = 82.4 bits (202), Expect = 2e-14 Identities = 60/155 (38%), Positives = 69/155 (44%), Gaps = 5/155 (3%) Query: 27 IRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXXLSYRGTGVALSATAHRRRPASXXXXX 86 +RGP+ G P R A L Y TGV +S T H RP Sbjct: 15 LRGPLDG----PRWRRAEPAQSRRPGRSRPGGAPLRYHRTGVGMSRTGHGSRPVPPATTV 70 Query: 87 XXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSG-VPDRLAVVRVDAGESLXXXXXXX 145 VA FG+M GGSA+ S S+G VPDRLAVVRV+ GESL Sbjct: 71 GLALLAAAITLWLGLVAQFGQMITGGSADGSADSTGRVPDRLAVVRVETGESLYDVAVRV 130 Query: 146 XXXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 +RIRELN L + A GQTLIAPVG Sbjct: 131 APNAPTRQVADRIRELNGLQTPALAVGQTLIAPVG 165 >tr|Q73W25|Q73W25_MYCPA Tax_Id=1770 SubName: Full=Putative uncharacterized protein;[Mycobacterium paratuberculosis] Length = 170 Score = 79.7 bits (195), Expect = 1e-13 Identities = 55/154 (35%), Positives = 68/154 (44%), Gaps = 3/154 (1%) Query: 27 IRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXXLSYRGTGVALSATAHRRRPASXXXXX 86 +R PV G + GR L Y GTGVA+S HRRR + Sbjct: 20 LRRPVNGPVQGVRYGRDGLTRPRRPGQVRPAGAATRYHGTGVAMSVAPHRRRSVTWVTTV 79 Query: 87 XXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSGVPDRLAVVRVDAGESLXXXXXXXX 146 VA+ G++ NG + + + + VPDRLAVVRVD GESL Sbjct: 80 GLALAAGAITLWLGLVANVGQVLNGDAPSSA---AHVPDRLAVVRVDPGESLSDVAHRVA 136 Query: 147 XXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 +RIRELN L S +GQTLIAPVG Sbjct: 137 PDAPAAQVADRIRELNDLNSPTLVAGQTLIAPVG 170 >tr|A0QIQ2|A0QIQ2_MYCA1 Tax_Id=243243 SubName: Full=LysM domain protein;[Mycobacterium avium] Length = 164 Score = 79.0 bits (193), Expect = 2e-13 Identities = 55/154 (35%), Positives = 68/154 (44%), Gaps = 3/154 (1%) Query: 27 IRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXXLSYRGTGVALSATAHRRRPASXXXXX 86 +R PV G + GR L Y GTGVA+S HRRR + Sbjct: 14 LRRPVNGPVQGVRYGRDGLTRPRRPGPVRPAGAATRYHGTGVAMSIAPHRRRSVTWVTTV 73 Query: 87 XXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSGVPDRLAVVRVDAGESLXXXXXXXX 146 VA+ G++ NG + + + + VPDRLAVVRVD GESL Sbjct: 74 GLALAAGAITLWLGLVANVGQVLNGDAPSSA---AHVPDRLAVVRVDPGESLSDVAHRVA 130 Query: 147 XXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 +RIRELN L S +GQTLIAPVG Sbjct: 131 PDAPAAQVADRIRELNDLNSPTLLAGQTLIAPVG 164 >tr|Q49846|Q49846_MYCLE Tax_Id=1769 SubName: Full=Possible conserved membrane protein; SubName: Full=B2235_C3_243;[Mycobacterium leprae] Length = 164 Score = 69.3 bits (168), Expect = 2e-10 Identities = 51/154 (33%), Positives = 64/154 (41%), Gaps = 3/154 (1%) Query: 27 IRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXXLSYRGTGVALSATAHRRRPASXXXXX 86 +R P+ I P G G A + Y G VA+ HR R S Sbjct: 14 VRHPMSRPILGPRCGSGESAGSRRPAPSRSASAPMRYSGASVAMLVAPHRGRTVSLAKTI 73 Query: 87 XXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSGVPDRLAVVRVDAGESLXXXXXXXX 146 +A ++ +G + + VP+RLAVVRV+AGESL Sbjct: 74 GLALLAGMITLWLGLMADVSQVIDGDATG---FVTHVPNRLAVVRVEAGESLQDVAARVA 130 Query: 147 XXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 ERIRELN L SSM +GQTLIAPVG Sbjct: 131 PDAPVRQVSERIRELNVLDSSMLVAGQTLIAPVG 164 >tr|B8ZQU6|B8ZQU6_MYCLB Tax_Id=561304 SubName: Full=Possible conserved membrane protein;[Mycobacterium leprae] Length = 164 Score = 69.3 bits (168), Expect = 2e-10 Identities = 51/154 (33%), Positives = 64/154 (41%), Gaps = 3/154 (1%) Query: 27 IRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXXLSYRGTGVALSATAHRRRPASXXXXX 86 +R P+ I P G G A + Y G VA+ HR R S Sbjct: 14 VRHPMSRPILGPRCGSGESAGSRRPAPSRSASAPMRYSGASVAMLVAPHRGRTVSLAKTI 73 Query: 87 XXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSGVPDRLAVVRVDAGESLXXXXXXXX 146 +A ++ +G + + VP+RLAVVRV+AGESL Sbjct: 74 GLALLAGMITLWLGLMADVSQVIDGDATG---FVTHVPNRLAVVRVEAGESLQDVAARVA 130 Query: 147 XXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 ERIRELN L SSM +GQTLIAPVG Sbjct: 131 PDAPVRQVSERIRELNVLDSSMLVAGQTLIAPVG 164 >tr|A1T7V5|A1T7V5_MYCVP Tax_Id=350058 SubName: Full=Peptidoglycan-binding LysM;[Mycobacterium vanbaalenii] Length = 202 Score = 63.5 bits (153), Expect = 9e-09 Identities = 43/117 (36%), Positives = 52/117 (44%), Gaps = 8/117 (6%) Query: 63 YRGTGVALSATAHRRRPASXXXXXXXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSG 122 YRGTGV +S HRRRP + V FGE+ + Sbjct: 93 YRGTGVLVSRAPHRRRPITPATTVLLALVAAAITLWLGLVGQFGELVGD--------QAE 144 Query: 123 VPDRLAVVRVDAGESLXXXXXXXXXXXXXXXXXERIRELNALGSSMPASGQTLIAPV 179 +P RLAVV+V +GESL +RIRELN L S +GQTLIAPV Sbjct: 145 IPGRLAVVQVQSGESLQHVAQRVAPDAPVADVVDRIRELNKLESVALDAGQTLIAPV 201 >tr|Q1BA07|Q1BA07_MYCSS Tax_Id=164756 SubName: Full=Peptidoglycan-binding LysM;[Mycobacterium sp.] Length = 148 Score = 61.2 bits (147), Expect = 5e-08 Identities = 51/159 (32%), Positives = 64/159 (40%), Gaps = 15/159 (9%) Query: 22 EARRFIRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXXLSYRGTGVALSATAHRRRPAS 81 E R+ + P + PV R A L +RG GV +S +HRRRP + Sbjct: 5 EVRQTQQHPAARGVRRPVDARRPRA-------GRPAGAALRHRGNGVLVSRASHRRRPIT 57 Query: 82 XXXXXXXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSGVPDRLAVVRVDAGESLXXX 141 VA+ G +A + VP LAVV+V GESL Sbjct: 58 PATTVLLALVAAGITVWLGLVANLGGVAGQ--------QAPVPADLAVVQVQMGESLHQV 109 Query: 142 XXXXXXXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 ERIRELN L S+ +GQTLIAPVG Sbjct: 110 AQRVAPDAPVGAVVERIRELNQLDSAAIDAGQTLIAPVG 148 >tr|A4TCN8|A4TCN8_MYCGI Tax_Id=350054 SubName: Full=Peptidoglycan-binding LysM;[Mycobacterium gilvum] Length = 203 Score = 61.2 bits (147), Expect = 5e-08 Identities = 43/117 (36%), Positives = 53/117 (45%), Gaps = 8/117 (6%) Query: 63 YRGTGVALSATAHRRRPASXXXXXXXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSG 122 YRGTGV +S +HRRRP + VA G VS + Sbjct: 94 YRGTGVLVSRASHRRRPITPMATVGLALVAGAITLWLGLVAQVG--------GVSGAETQ 145 Query: 123 VPDRLAVVRVDAGESLXXXXXXXXXXXXXXXXXERIRELNALGSSMPASGQTLIAPV 179 +P RLAVV+V +GESL RI+ELN L S+ +GQTLIAPV Sbjct: 146 MPGRLAVVQVQSGESLQHVARRVAPDAPVTEVVARIQELNELDSAAVDAGQTLIAPV 202 >tr|A3PYG7|A3PYG7_MYCSJ Tax_Id=164757 SubName: Full=Peptidoglycan-binding LysM;[Mycobacterium sp.] Length = 148 Score = 61.2 bits (147), Expect = 5e-08 Identities = 51/159 (32%), Positives = 64/159 (40%), Gaps = 15/159 (9%) Query: 22 EARRFIRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXXLSYRGTGVALSATAHRRRPAS 81 E R+ + P + PV R A L +RG GV +S +HRRRP + Sbjct: 5 EVRQTQQHPAARGVRRPVDARRPRA-------GRPAGAALRHRGNGVLVSRASHRRRPIT 57 Query: 82 XXXXXXXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSGVPDRLAVVRVDAGESLXXX 141 VA+ G +A + VP LAVV+V GESL Sbjct: 58 PATTVLLALVAAGITVWLGLVANLGGVAGQ--------QAPVPADLAVVQVQMGESLHQV 109 Query: 142 XXXXXXXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 ERIRELN L S+ +GQTLIAPVG Sbjct: 110 AQRVAPDAPVGAVVERIRELNQLDSAAIDAGQTLIAPVG 148 >tr|A1UF05|A1UF05_MYCSK Tax_Id=189918 SubName: Full=Peptidoglycan-binding LysM;[Mycobacterium sp.] Length = 148 Score = 61.2 bits (147), Expect = 5e-08 Identities = 51/159 (32%), Positives = 64/159 (40%), Gaps = 15/159 (9%) Query: 22 EARRFIRGPVGGAIHEPVTGRGRLATXXXXXXXXXXXXXLSYRGTGVALSATAHRRRPAS 81 E R+ + P + PV R A L +RG GV +S +HRRRP + Sbjct: 5 EVRQTQQHPAARGVRRPVDARRPRA-------GRPAGAALRHRGNGVLVSRASHRRRPIT 57 Query: 82 XXXXXXXXXXXXXXXXXXXXVAHFGEMANGGSANVSPISSGVPDRLAVVRVDAGESLXXX 141 VA+ G +A + VP LAVV+V GESL Sbjct: 58 PATTVLLALVAAGITVWLGLVANLGGVAGQ--------QAPVPADLAVVQVQMGESLHQV 109 Query: 142 XXXXXXXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 ERIRELN L S+ +GQTLIAPVG Sbjct: 110 AQRVAPDAPVGAVVERIRELNQLDSAAIDAGQTLIAPVG 148 >tr|B1MCZ4|B1MCZ4_MYCA9 Tax_Id=561007 SubName: Full=Putative uncharacterized protein;[Mycobacterium abscessus] Length = 170 Score = 59.3 bits (142), Expect = 2e-07 Identities = 41/123 (33%), Positives = 54/123 (43%), Gaps = 11/123 (8%) Query: 61 LSYRGTGVALSATAHR---RRPASXXXXXXXXXXXXXXXXXXXXVAHFGEMANGGSANVS 117 ++YRG G+ +S AHR RRP S + GG+ Sbjct: 56 VAYRGNGIRVSGVAHRVHRRRPVSLKATIVVAVGAAVATMWLLMLGQVSAAGIGGA---- 111 Query: 118 PISSGVPDRLAVVRVDAGESLXXXXXXXXXXXXXXXXXERIRELNALGSSMPASGQTLIA 177 GVPDRLAVV+V GE+L +IRELN L S+ +GQTL++ Sbjct: 112 ----GVPDRLAVVQVAPGETLADVASRVAPEAPRSAVVSKIRELNELDSATVQAGQTLVS 167 Query: 178 PVG 180 PVG Sbjct: 168 PVG 170 >tr|A0QVY7|A0QVY7_MYCS2 Tax_Id=246196 SubName: Full=DNA-damage-inducible protein;[Mycobacterium smegmatis] Length = 185 Score = 58.9 bits (141), Expect = 2e-07 Identities = 45/120 (37%), Positives = 58/120 (48%), Gaps = 7/120 (5%) Query: 61 LSYRGTGVALSATAHRRRPASXXXXXXXXXXXXXXXXXXXXVAHFGEMANGGSANVSPIS 120 L +RGTGV +S +HRR P + VA FG + G SA VS Sbjct: 73 LRHRGTGVLMSRASHRR-PITPATTVVLALVAAGITVWLGLVAQFGGVL-GSSAPVS--- 127 Query: 121 SGVPDRLAVVRVDAGESLXXXXXXXXXXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 VP LAVV+V +GE+L ++IR+LN L S+ +GQTLIAPVG Sbjct: 128 --VPSELAVVQVQSGETLQQVARRVAPDAPVAAVVQQIRDLNQLESAALDAGQTLIAPVG 185 >tr|Q4GWU1|Q4GWU1_MYCSM Tax_Id=1772 (ddiG)SubName: Full=DNA-damage-inducible protein;[Mycobacterium smegmatis] Length = 185 Score = 58.9 bits (141), Expect = 2e-07 Identities = 45/120 (37%), Positives = 58/120 (48%), Gaps = 7/120 (5%) Query: 61 LSYRGTGVALSATAHRRRPASXXXXXXXXXXXXXXXXXXXXVAHFGEMANGGSANVSPIS 120 L +RGTGV +S +HRR P + VA FG + G SA VS Sbjct: 73 LRHRGTGVLMSRASHRR-PITPATTVVLALVAAGITVWLGLVAQFGGVL-GSSAPVS--- 127 Query: 121 SGVPDRLAVVRVDAGESLXXXXXXXXXXXXXXXXXERIRELNALGSSMPASGQTLIAPVG 180 VP LAVV+V +GE+L ++IR+LN L S+ +GQTLIAPVG Sbjct: 128 --VPSELAVVQVQSGETLQQVARRVAPDAPVAAVVQQIRDLNQLESAALDAGQTLIAPVG 185 >tr|A1SND0|A1SND0_NOCSJ Tax_Id=196162 SubName: Full=Peptidoglycan-binding LysM; Flags: Precursor;[Nocardioides sp.] Length = 118 Score = 37.7 bits (86), Expect = 0.55 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Query: 106 GEMANGGSANVSPISSGVPDRLAVVRVDAGESLXXXXXXXXXXXXXXXXXERIRELNALG 165 G + GGS V+ SG P+ VV V G++L +RI+ LNAL Sbjct: 46 GFVLAGGS--VATGESGHPEPTRVVMVGTGDTLWDIAAGLSDDGDVRAMVDRIQRLNALD 103 Query: 166 SSMPASGQTLIAPV 179 S M +GQ L+ PV Sbjct: 104 SGMVVAGQRLLVPV 117 >tr|C6WAB7|C6WAB7_ACTMD Tax_Id=446462 SubName: Full=Peptidoglycan-binding LysM;[Actinosynnema mirum] Length = 165 Score = 35.8 bits (81), Expect = 2.1 Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 121 SGVPDRLAVVRVDAGESLXXXXXXXXXXXXXXXXXERIRELNALG--SSMPASGQTLIAP 178 SGVPDR V GE+L ERI ELN LG ++ GQ L P Sbjct: 100 SGVPDRTTTAHVQVGETLRDVAERSAPGSDPEAVAERIAELNGLGGPDAVVRPGQALTVP 159 Query: 179 VG 180 G Sbjct: 160 DG 161 >tr|C0ZYQ0|C0ZYQ0_RHOE4 Tax_Id=234621 SubName: Full=Putative uncharacterized protein;[Rhodococcus erythropolis] Length = 258 Score = 35.4 bits (80), Expect = 2.7 Identities = 22/50 (44%), Positives = 26/50 (52%) Query: 129 VVRVDAGESLXXXXXXXXXXXXXXXXXERIRELNALGSSMPASGQTLIAP 178 VVRV AGESL E+I +LNA+ SS + GQTLI P Sbjct: 205 VVRVAAGESLSDIAAKVAPGQAVGSVIEQIMDLNAMSSSGLSVGQTLIVP 254 >tr|C3JK95|C3JK95_RHOER Tax_Id=596309 SubName: Full=DNA-damage-inducible protein;[Rhodococcus erythropolis SK121] Length = 237 Score = 35.4 bits (80), Expect = 2.7 Identities = 22/50 (44%), Positives = 26/50 (52%) Query: 129 VVRVDAGESLXXXXXXXXXXXXXXXXXERIRELNALGSSMPASGQTLIAP 178 VVRV AGESL E+I +LNA+ SS + GQTLI P Sbjct: 184 VVRVAAGESLSDIAAKVAPGQAVGSVIEQIMDLNAMSSSGLSVGQTLIVP 233 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.318 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 819,813,577 Number of extensions: 20194786 Number of successful extensions: 25030 Number of sequences better than 10.0: 27 Number of HSP's gapped: 24992 Number of HSP's successfully gapped: 27 Length of query: 180 Length of database: 3,846,993,858 Length adjustment: 128 Effective length of query: 52 Effective length of database: 2,403,767,874 Effective search space: 124995929448 Effective search space used: 124995929448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 76 (33.9 bits)