BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_2003 (333 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HLY9|B2HLY9_MYCMM Tax_Id=216594 (sigB)RecName: Full=RNA pol... 647 0.0 tr|A0PT65|A0PT65_MYCUA Tax_Id=362242 (sigB)RecName: Full=RNA pol... 625 e-177 tr|C6DLJ7|C6DLJ7_MYCTK Tax_Id=478434 RecName: Full=RNA polymeras... 603 e-171 tr|A5WQW2|A5WQW2_MYCTF Tax_Id=336982 RecName: Full=RNA polymeras... 603 e-171 tr|P77906|P77906_MYCTU Tax_Id=1773 (mytB)RecName: Full=RNA polym... 602 e-170 tr|Q7TY20|Q7TY20_MYCBO Tax_Id=1765 (sigB)RecName: Full=RNA polym... 592 e-167 tr|Q59563|Q59563_MYCTU Tax_Id=1773 (mysB)RecName: Full=RNA polym... 592 e-167 tr|C1AFG9|C1AFG9_MYCBT Tax_Id=561275 (sigB)RecName: Full=RNA pol... 592 e-167 tr|A5U662|A5U662_MYCTA Tax_Id=419947 (sigB)RecName: Full=RNA pol... 592 e-167 tr|A1KM48|A1KM48_MYCBP Tax_Id=410289 (sigB)RecName: Full=RNA pol... 592 e-167 tr|A4KJZ0|A4KJZ0_MYCTU Tax_Id=395095 RecName: Full=RNA polymeras... 592 e-167 tr|Q73W34|Q73W34_MYCPA Tax_Id=1770 (sigB)RecName: Full=RNA polym... 589 e-166 tr|Q59531|Q59531_MYCLE Tax_Id=1769 RecName: Full=RNA polymerase ... 587 e-166 tr|B8ZQV3|B8ZQV3_MYCLB Tax_Id=561304 RecName: Full=RNA polymeras... 587 e-166 tr|A0QIP2|A0QIP2_MYCA1 Tax_Id=243243 RecName: Full=RNA polymeras... 583 e-164 tr|A1T7W4|A1T7W4_MYCVP Tax_Id=350058 RecName: Full=RNA polymeras... 572 e-161 tr|A4TCQ2|A4TCQ2_MYCGI Tax_Id=350054 RecName: Full=RNA polymeras... 570 e-161 tr|Q1B9Z9|Q1B9Z9_MYCSS Tax_Id=164756 RecName: Full=RNA polymeras... 568 e-160 tr|A3PYH5|A3PYH5_MYCSJ Tax_Id=164757 RecName: Full=RNA polymeras... 568 e-160 tr|A1UF13|A1UF13_MYCSK Tax_Id=189918 RecName: Full=RNA polymeras... 568 e-160 tr|A0QVZ5|A0QVZ5_MYCS2 Tax_Id=246196 RecName: Full=RNA polymeras... 566 e-159 tr|Q59553|Q59553_MYCSM Tax_Id=1772 (mysB)RecName: Full=RNA polym... 557 e-157 tr|B1MCY5|B1MCY5_MYCA9 Tax_Id=561007 RecName: Full=RNA polymeras... 540 e-151 tr|Q5YT68|Q5YT68_NOCFA Tax_Id=37329 (sigB)RecName: Full=RNA poly... 535 e-150 tr|C2APA0|C2APA0_TSUPA Tax_Id=521096 RecName: Full=RNA polymeras... 531 e-149 tr|D0LBS2|D0LBS2_GORB4 Tax_Id=526226 SubName: Full=RNA polymeras... 526 e-147 tr|Q0S1K1|Q0S1K1_RHOSR Tax_Id=101510 (sigB)RecName: Full=RNA pol... 520 e-145 tr|C1B3C8|C1B3C8_RHOOB Tax_Id=632772 (sigB)RecName: Full=RNA pol... 519 e-145 tr|C6L2K1|C6L2K1_RHOOP Tax_Id=37919 (sigB)RecName: Full=RNA poly... 519 e-145 tr|Q8VM94|Q8VM94_RHOFA Tax_Id=1828 (rofB)RecName: Full=RNA polym... 518 e-145 tr|C0ZYS7|C0ZYS7_RHOE4 Tax_Id=234621 (sigB)RecName: Full=RNA pol... 517 e-145 tr|C3JLK3|C3JLK3_RHOER Tax_Id=596309 RecName: Full=RNA polymeras... 517 e-145 tr|C7MZ75|C7MZ75_SACVD Tax_Id=471857 RecName: Full=RNA polymeras... 496 e-138 tr|A4FAM7|A4FAM7_SACEN Tax_Id=405948 (sigB)RecName: Full=RNA pol... 489 e-136 tr|C6WAH7|C6WAH7_ACTMD Tax_Id=446462 RecName: Full=RNA polymeras... 484 e-135 tr|C4LJ13|C4LJ13_CORK4 Tax_Id=645127 (sigB)RecName: Full=RNA pol... 477 e-133 tr|C8XG81|C8XG81_NAKMY Tax_Id=479431 SubName: Full=RNA polymeras... 471 e-131 tr|Q4JV99|Q4JV99_CORJK Tax_Id=306537 (sigB)RecName: Full=RNA pol... 468 e-130 tr|C8RTK2|C8RTK2_CORJE Tax_Id=525262 (sigB)SubName: Full=RNA pol... 468 e-130 tr|C2CP37|C2CP37_CORST Tax_Id=525268 (sigB)RecName: Full=RNA pol... 466 e-129 tr|C3PGV0|C3PGV0_CORA7 Tax_Id=548476 (sigB)RecName: Full=RNA pol... 465 e-129 tr|B1VDF6|B1VDF6_CORU7 Tax_Id=504474 RecName: Full=RNA polymeras... 463 e-128 sp|P33118|RPSB_CORDI Tax_Id=1717 (sigB)RecName: Full=RNA polymer... 458 e-127 tr|C6RAB0|C6RAB0_9CORY Tax_Id=553206 RecName: Full=RNA polymeras... 458 e-127 tr|C2BP49|C2BP49_9CORY Tax_Id=525264 RecName: Full=RNA polymeras... 458 e-127 tr|C0WKT8|C0WKT8_9CORY Tax_Id=525260 (sigB)RecName: Full=RNA pol... 456 e-126 tr|A4QES7|A4QES7_CORGB Tax_Id=340322 RecName: Full=RNA polymeras... 456 e-126 tr|Q9ANT6|Q9ANT6_9CORY Tax_Id=92706 (sigB)RecName: Full=RNA poly... 456 e-126 tr|Q79VF3|Q79VF3_CORGL Tax_Id=1718 (sigB)RecName: Full=RNA polym... 455 e-126 tr|C0E2Q6|C0E2Q6_9CORY Tax_Id=566549 RecName: Full=RNA polymeras... 452 e-125 >tr|B2HLY9|B2HLY9_MYCMM Tax_Id=216594 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium marinum] Length = 333 Score = 647 bits (1668), Expect = 0.0 Identities = 333/333 (100%), Positives = 333/333 (100%) Query: 1 MTAQADREGEMAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAK 60 MTAQADREGEMAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAK Sbjct: 1 MTAQADREGEMAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAK 60 Query: 61 RIEAGLYAEHLLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGM 120 RIEAGLYAEHLLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGM Sbjct: 61 RIEAGLYAEHLLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGM 120 Query: 121 PLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ 180 PLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ Sbjct: 121 PLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ 180 Query: 181 VNKLARIKREMHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPL 240 VNKLARIKREMHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPL Sbjct: 181 VNKLARIKREMHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPL 240 Query: 241 GDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL 300 GDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL Sbjct: 241 GDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL 300 Query: 301 FGLSRERVRQIERDVMCKLRHGERADRLRSYAS 333 FGLSRERVRQIERDVMCKLRHGERADRLRSYAS Sbjct: 301 FGLSRERVRQIERDVMCKLRHGERADRLRSYAS 333 >tr|A0PT65|A0PT65_MYCUA Tax_Id=362242 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium ulcerans] Length = 323 Score = 625 bits (1611), Expect = e-177 Identities = 321/323 (99%), Positives = 323/323 (100%) Query: 11 MAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEH 70 MAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEH Sbjct: 1 MAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEH 60 Query: 71 LLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 130 LLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN Sbjct: 61 LLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120 Query: 131 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 190 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE Sbjct: 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180 Query: 191 MHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 250 +HQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGS+EEAPLGDFIEDAEAM Sbjct: 181 IHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAM 240 Query: 251 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 310 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ Sbjct: 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300 Query: 311 IERDVMCKLRHGERADRLRSYAS 333 IERDVMCKLRHGERADRLRSYAS Sbjct: 301 IERDVMCKLRHGERADRLRSYAS 323 >tr|C6DLJ7|C6DLJ7_MYCTK Tax_Id=478434 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 345 Score = 603 bits (1556), Expect = e-171 Identities = 312/333 (93%), Positives = 317/333 (95%) Query: 1 MTAQADREGEMAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAK 60 MT QADRE MA R RVDSDLDAQSPAADLVRVYLNGIGKTALLNA GEVELAK Sbjct: 13 MTVQADREVAMADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAK 72 Query: 61 RIEAGLYAEHLLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGM 120 RIEAGLYAEHLL TRKRLG+NRKR+LAAVVRDG ARRHLLEANLRLVVSLAKRYTGRGM Sbjct: 73 RIEAGLYAEHLLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGM 132 Query: 121 PLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ 180 PLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ Sbjct: 133 PLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ 192 Query: 181 VNKLARIKREMHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPL 240 VNKLARIKREMHQ+LGREATDEELAAESGIP++KINDLLEHSRDPVSLDMPVGSEEEAPL Sbjct: 193 VNKLARIKREMHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPL 252 Query: 241 GDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL 300 GDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL Sbjct: 253 GDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL 312 Query: 301 FGLSRERVRQIERDVMCKLRHGERADRLRSYAS 333 FGLSRERVRQIERDVM KLRHGERADRLRSYAS Sbjct: 313 FGLSRERVRQIERDVMSKLRHGERADRLRSYAS 345 >tr|A5WQW2|A5WQW2_MYCTF Tax_Id=336982 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 345 Score = 603 bits (1556), Expect = e-171 Identities = 312/333 (93%), Positives = 317/333 (95%) Query: 1 MTAQADREGEMAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAK 60 MT QADRE MA R RVDSDLDAQSPAADLVRVYLNGIGKTALLNA GEVELAK Sbjct: 13 MTVQADREVAMADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAK 72 Query: 61 RIEAGLYAEHLLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGM 120 RIEAGLYAEHLL TRKRLG+NRKR+LAAVVRDG ARRHLLEANLRLVVSLAKRYTGRGM Sbjct: 73 RIEAGLYAEHLLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGM 132 Query: 121 PLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ 180 PLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ Sbjct: 133 PLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ 192 Query: 181 VNKLARIKREMHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPL 240 VNKLARIKREMHQ+LGREATDEELAAESGIP++KINDLLEHSRDPVSLDMPVGSEEEAPL Sbjct: 193 VNKLARIKREMHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPL 252 Query: 241 GDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL 300 GDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL Sbjct: 253 GDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL 312 Query: 301 FGLSRERVRQIERDVMCKLRHGERADRLRSYAS 333 FGLSRERVRQIERDVM KLRHGERADRLRSYAS Sbjct: 313 FGLSRERVRQIERDVMSKLRHGERADRLRSYAS 345 >tr|P77906|P77906_MYCTU Tax_Id=1773 (mytB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 345 Score = 602 bits (1551), Expect = e-170 Identities = 311/333 (93%), Positives = 316/333 (94%) Query: 1 MTAQADREGEMAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAK 60 MT QADRE MA R RVDSDLDAQSPAADLVRVYLNGIGKTALLN GEVELAK Sbjct: 13 MTVQADREVAMADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNPAGEVELAK 72 Query: 61 RIEAGLYAEHLLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGM 120 RIEAGLYAEHLL TRKRLG+NRKR+LAAVVRDG ARRHLLEANLRLVVSLAKRYTGRGM Sbjct: 73 RIEAGLYAEHLLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGM 132 Query: 121 PLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ 180 PLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ Sbjct: 133 PLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ 192 Query: 181 VNKLARIKREMHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPL 240 VNKLARIKREMHQ+LGREATDEELAAESGIP++KINDLLEHSRDPVSLDMPVGSEEEAPL Sbjct: 193 VNKLARIKREMHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPL 252 Query: 241 GDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL 300 GDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL Sbjct: 253 GDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL 312 Query: 301 FGLSRERVRQIERDVMCKLRHGERADRLRSYAS 333 FGLSRERVRQIERDVM KLRHGERADRLRSYAS Sbjct: 313 FGLSRERVRQIERDVMSKLRHGERADRLRSYAS 345 >tr|Q7TY20|Q7TY20_MYCBO Tax_Id=1765 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 323 Score = 592 bits (1525), Expect = e-167 Identities = 305/323 (94%), Positives = 310/323 (95%) Query: 11 MAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEH 70 MA R RVDSDLDAQSPAADLVRVYLNGIGKTALLNA GEVELAKRIEAGLYAEH Sbjct: 1 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 60 Query: 71 LLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 130 LL TRKRLG+NRKR+LAAVVRDG ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN Sbjct: 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120 Query: 131 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 190 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE Sbjct: 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180 Query: 191 MHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 250 MHQ+LGREATDEELAAESGIP++KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM Sbjct: 181 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 240 Query: 251 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 310 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ Sbjct: 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300 Query: 311 IERDVMCKLRHGERADRLRSYAS 333 IERDVM KLRHGERADRLRSYAS Sbjct: 301 IERDVMSKLRHGERADRLRSYAS 323 >tr|Q59563|Q59563_MYCTU Tax_Id=1773 (mysB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 323 Score = 592 bits (1525), Expect = e-167 Identities = 305/323 (94%), Positives = 310/323 (95%) Query: 11 MAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEH 70 MA R RVDSDLDAQSPAADLVRVYLNGIGKTALLNA GEVELAKRIEAGLYAEH Sbjct: 1 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 60 Query: 71 LLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 130 LL TRKRLG+NRKR+LAAVVRDG ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN Sbjct: 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120 Query: 131 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 190 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE Sbjct: 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180 Query: 191 MHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 250 MHQ+LGREATDEELAAESGIP++KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM Sbjct: 181 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 240 Query: 251 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 310 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ Sbjct: 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300 Query: 311 IERDVMCKLRHGERADRLRSYAS 333 IERDVM KLRHGERADRLRSYAS Sbjct: 301 IERDVMSKLRHGERADRLRSYAS 323 >tr|C1AFG9|C1AFG9_MYCBT Tax_Id=561275 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 323 Score = 592 bits (1525), Expect = e-167 Identities = 305/323 (94%), Positives = 310/323 (95%) Query: 11 MAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEH 70 MA R RVDSDLDAQSPAADLVRVYLNGIGKTALLNA GEVELAKRIEAGLYAEH Sbjct: 1 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 60 Query: 71 LLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 130 LL TRKRLG+NRKR+LAAVVRDG ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN Sbjct: 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120 Query: 131 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 190 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE Sbjct: 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180 Query: 191 MHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 250 MHQ+LGREATDEELAAESGIP++KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM Sbjct: 181 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 240 Query: 251 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 310 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ Sbjct: 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300 Query: 311 IERDVMCKLRHGERADRLRSYAS 333 IERDVM KLRHGERADRLRSYAS Sbjct: 301 IERDVMSKLRHGERADRLRSYAS 323 >tr|A5U662|A5U662_MYCTA Tax_Id=419947 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 323 Score = 592 bits (1525), Expect = e-167 Identities = 305/323 (94%), Positives = 310/323 (95%) Query: 11 MAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEH 70 MA R RVDSDLDAQSPAADLVRVYLNGIGKTALLNA GEVELAKRIEAGLYAEH Sbjct: 1 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 60 Query: 71 LLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 130 LL TRKRLG+NRKR+LAAVVRDG ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN Sbjct: 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120 Query: 131 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 190 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE Sbjct: 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180 Query: 191 MHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 250 MHQ+LGREATDEELAAESGIP++KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM Sbjct: 181 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 240 Query: 251 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 310 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ Sbjct: 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300 Query: 311 IERDVMCKLRHGERADRLRSYAS 333 IERDVM KLRHGERADRLRSYAS Sbjct: 301 IERDVMSKLRHGERADRLRSYAS 323 >tr|A1KM48|A1KM48_MYCBP Tax_Id=410289 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 323 Score = 592 bits (1525), Expect = e-167 Identities = 305/323 (94%), Positives = 310/323 (95%) Query: 11 MAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEH 70 MA R RVDSDLDAQSPAADLVRVYLNGIGKTALLNA GEVELAKRIEAGLYAEH Sbjct: 1 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 60 Query: 71 LLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 130 LL TRKRLG+NRKR+LAAVVRDG ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN Sbjct: 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120 Query: 131 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 190 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE Sbjct: 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180 Query: 191 MHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 250 MHQ+LGREATDEELAAESGIP++KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM Sbjct: 181 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 240 Query: 251 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 310 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ Sbjct: 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300 Query: 311 IERDVMCKLRHGERADRLRSYAS 333 IERDVM KLRHGERADRLRSYAS Sbjct: 301 IERDVMSKLRHGERADRLRSYAS 323 >tr|A4KJZ0|A4KJZ0_MYCTU Tax_Id=395095 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis str. Haarlem] Length = 323 Score = 592 bits (1525), Expect = e-167 Identities = 305/323 (94%), Positives = 310/323 (95%) Query: 11 MAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEH 70 MA R RVDSDLDAQSPAADLVRVYLNGIGKTALLNA GEVELAKRIEAGLYAEH Sbjct: 1 MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEH 60 Query: 71 LLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 130 LL TRKRLG+NRKR+LAAVVRDG ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN Sbjct: 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120 Query: 131 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 190 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE Sbjct: 121 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180 Query: 191 MHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 250 MHQ+LGREATDEELAAESGIP++KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM Sbjct: 181 MHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 240 Query: 251 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 310 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ Sbjct: 241 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 300 Query: 311 IERDVMCKLRHGERADRLRSYAS 333 IERDVM KLRHGERADRLRSYAS Sbjct: 301 IERDVMSKLRHGERADRLRSYAS 323 >tr|Q73W34|Q73W34_MYCPA Tax_Id=1770 (sigB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium paratuberculosis] Length = 332 Score = 589 bits (1519), Expect = e-166 Identities = 307/333 (92%), Positives = 313/333 (93%), Gaps = 4/333 (1%) Query: 1 MTAQADREGEMAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAK 60 MT QA+RE MA R D DLDAQSPAADLVRVYLNGIGKTALLNA GEVELAK Sbjct: 4 MTVQAEREVAMAN----ASTSRFDGDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAK 59 Query: 61 RIEAGLYAEHLLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGM 120 RIEAGLYAEHLL TRKRLG+NRKR+L AVVRDG ARRHLLEANLRLVVSLAKRYTGRGM Sbjct: 60 RIEAGLYAEHLLETRKRLGENRKRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGM 119 Query: 121 PLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ 180 PLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ Sbjct: 120 PLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ 179 Query: 181 VNKLARIKREMHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPL 240 VNKLARIKREMHQNLGREATDEELAAESGIP++KINDLLEHSRDPVSLDMPVGSEEEAPL Sbjct: 180 VNKLARIKREMHQNLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPL 239 Query: 241 GDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL 300 GDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL Sbjct: 240 GDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL 299 Query: 301 FGLSRERVRQIERDVMCKLRHGERADRLRSYAS 333 FGLSRERVRQIERDVM KLR+GERADRLRSYAS Sbjct: 300 FGLSRERVRQIERDVMSKLRNGERADRLRSYAS 332 >tr|Q59531|Q59531_MYCLE Tax_Id=1769 RecName: Full=RNA polymerase sigma factor;[Mycobacterium leprae] Length = 319 Score = 587 bits (1512), Expect = e-166 Identities = 302/319 (94%), Positives = 306/319 (95%) Query: 15 IARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLAT 74 +A RVDSDLDAQSPAADLVRVYLNGIGKTALLNA EVELAKRIEAGLYAEHLL T Sbjct: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 Query: 75 RKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 134 RKR G+ RKR LAAV RDGA ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 RKRFGEGRKRALAAVARDGAAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 135 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 194 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 195 LGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 254 LGREATDEELAAESGIP+EKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN Sbjct: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 Query: 255 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 314 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD Sbjct: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 Query: 315 VMCKLRHGERADRLRSYAS 333 VMCKLR+GERADRLRSYAS Sbjct: 301 VMCKLRNGERADRLRSYAS 319 >tr|B8ZQV3|B8ZQV3_MYCLB Tax_Id=561304 RecName: Full=RNA polymerase sigma factor;[Mycobacterium leprae] Length = 319 Score = 587 bits (1512), Expect = e-166 Identities = 302/319 (94%), Positives = 306/319 (95%) Query: 15 IARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLAT 74 +A RVDSDLDAQSPAADLVRVYLNGIGKTALLNA EVELAKRIEAGLYAEHLL T Sbjct: 1 MAEATTNRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAEHLLQT 60 Query: 75 RKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 134 RKR G+ RKR LAAV RDGA ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 RKRFGEGRKRALAAVARDGAAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 135 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 194 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 195 LGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 254 LGREATDEELAAESGIP+EKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN Sbjct: 181 LGREATDEELAAESGIPIEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 Query: 255 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 314 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD Sbjct: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 Query: 315 VMCKLRHGERADRLRSYAS 333 VMCKLR+GERADRLRSYAS Sbjct: 301 VMCKLRNGERADRLRSYAS 319 >tr|A0QIP2|A0QIP2_MYCA1 Tax_Id=243243 RecName: Full=RNA polymerase sigma factor;[Mycobacterium avium] Length = 319 Score = 583 bits (1503), Expect = e-164 Identities = 300/319 (94%), Positives = 306/319 (95%) Query: 15 IARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLAT 74 +A R D DLDAQSPAADLVRVYLNGIGKTALLNA GEVELAKRIEAGLYAEHLL T Sbjct: 1 MANASTSRFDGDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLET 60 Query: 75 RKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 134 RKRLG+NRKR+L AVVRDG ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 RKRLGENRKRDLEAVVRDGQAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 135 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 194 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 195 LGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 254 LGREATDEELAAESGIP++KINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN Sbjct: 181 LGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 240 Query: 255 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 314 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD Sbjct: 241 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 300 Query: 315 VMCKLRHGERADRLRSYAS 333 VM KLR+GERADRLRSYAS Sbjct: 301 VMSKLRNGERADRLRSYAS 319 >tr|A1T7W4|A1T7W4_MYCVP Tax_Id=350058 RecName: Full=RNA polymerase sigma factor;[Mycobacterium vanbaalenii] Length = 329 Score = 572 bits (1474), Expect = e-161 Identities = 298/333 (89%), Positives = 307/333 (92%), Gaps = 4/333 (1%) Query: 1 MTAQADREGEMAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAK 60 M D+E MA R+D DLDAQSPAADLVRVYLNGIGKTALLNA EVELAK Sbjct: 1 MKVPPDQEAAMAN----ATTSRIDQDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAK 56 Query: 61 RIEAGLYAEHLLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGM 120 RIEAGLYA+HLL TRKRLG+NRKR+LAAVVRDG ARRHLLEANLRLVVSLAKRYTGRGM Sbjct: 57 RIEAGLYAQHLLDTRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGM 116 Query: 121 PLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ 180 PLLDLIQEGNLGLIRAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ Sbjct: 117 PLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ 176 Query: 181 VNKLARIKREMHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPL 240 VNKLARIKREMHQNLGREATDEELAAESGIPVEKI DLLEHSRDPVSLDMPVGS+EEAPL Sbjct: 177 VNKLARIKREMHQNLGREATDEELAAESGIPVEKITDLLEHSRDPVSLDMPVGSDEEAPL 236 Query: 241 GDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL 300 GDFIEDAEAMSAENAVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKL Sbjct: 237 GDFIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKL 296 Query: 301 FGLSRERVRQIERDVMCKLRHGERADRLRSYAS 333 FGLSRERVRQIER+VM KLR+GERADRLRSYAS Sbjct: 297 FGLSRERVRQIEREVMAKLRNGERADRLRSYAS 329 >tr|A4TCQ2|A4TCQ2_MYCGI Tax_Id=350054 RecName: Full=RNA polymerase sigma factor;[Mycobacterium gilvum] Length = 329 Score = 570 bits (1469), Expect = e-161 Identities = 297/333 (89%), Positives = 306/333 (91%), Gaps = 4/333 (1%) Query: 1 MTAQADREGEMAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAK 60 M D+E MA R D DLDAQSPAADLVRVYLNGIGKTALL A EVELAK Sbjct: 1 MNVPPDQEAAMAN----ATTSRFDQDLDAQSPAADLVRVYLNGIGKTALLTAADEVELAK 56 Query: 61 RIEAGLYAEHLLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGM 120 RIEAGLYA+HLLATRKRLG+NRKR+LAAVVRDG ARRHLLEANLRLVVSLAKRYTGRGM Sbjct: 57 RIEAGLYAQHLLATRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGM 116 Query: 121 PLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ 180 PLLDLIQEGNLGLIRAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ Sbjct: 117 PLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQ 176 Query: 181 VNKLARIKREMHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPL 240 VNKLARIKREMHQNLGREATDEELA ESGIPVEKINDLLEHSRDPVSLDMPVGS+EEAPL Sbjct: 177 VNKLARIKREMHQNLGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGSDEEAPL 236 Query: 241 GDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKL 300 GDFIEDAEAMSAENAVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKL Sbjct: 237 GDFIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKL 296 Query: 301 FGLSRERVRQIERDVMCKLRHGERADRLRSYAS 333 FGLSRERVRQIER+VM KLR+G+RADRLRSYAS Sbjct: 297 FGLSRERVRQIEREVMAKLRNGDRADRLRSYAS 329 >tr|Q1B9Z9|Q1B9Z9_MYCSS Tax_Id=164756 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 319 Score = 568 bits (1464), Expect = e-160 Identities = 293/319 (91%), Positives = 303/319 (94%) Query: 15 IARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLAT 74 +A RVDSDLDAQSPAADLVRVYLNGIGKTALLNA EVELAKRIEAGLYA+HLL T Sbjct: 1 MANATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLNT 60 Query: 75 RKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 134 +KRLG++RKR+LAAVVRDG ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 KKRLGESRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 135 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 194 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 195 LGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 254 LGREATDEELA ESGIP EKI DLLEHSRDPVSLDMPVGS+EEAPLGDFIEDAEAMSAEN Sbjct: 181 LGREATDEELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAEN 240 Query: 255 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 314 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 241 AVISELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 Query: 315 VMCKLRHGERADRLRSYAS 333 VM KLR+GERADRLRSYAS Sbjct: 301 VMAKLRNGERADRLRSYAS 319 >tr|A3PYH5|A3PYH5_MYCSJ Tax_Id=164757 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 319 Score = 568 bits (1464), Expect = e-160 Identities = 293/319 (91%), Positives = 303/319 (94%) Query: 15 IARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLAT 74 +A RVDSDLDAQSPAADLVRVYLNGIGKTALLNA EVELAKRIEAGLYA+HLL T Sbjct: 1 MANATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLNT 60 Query: 75 RKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 134 +KRLG++RKR+LAAVVRDG ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 KKRLGESRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 135 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 194 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 195 LGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 254 LGREATDEELA ESGIP EKI DLLEHSRDPVSLDMPVGS+EEAPLGDFIEDAEAMSAEN Sbjct: 181 LGREATDEELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAEN 240 Query: 255 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 314 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 241 AVISELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 Query: 315 VMCKLRHGERADRLRSYAS 333 VM KLR+GERADRLRSYAS Sbjct: 301 VMAKLRNGERADRLRSYAS 319 >tr|A1UF13|A1UF13_MYCSK Tax_Id=189918 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 319 Score = 568 bits (1464), Expect = e-160 Identities = 293/319 (91%), Positives = 303/319 (94%) Query: 15 IARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLAT 74 +A RVDSDLDAQSPAADLVRVYLNGIGKTALLNA EVELAKRIEAGLYA+HLL T Sbjct: 1 MANATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLNT 60 Query: 75 RKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 134 +KRLG++RKR+LAAVVRDG ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 KKRLGESRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 135 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 194 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 195 LGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 254 LGREATDEELA ESGIP EKI DLLEHSRDPVSLDMPVGS+EEAPLGDFIEDAEAMSAEN Sbjct: 181 LGREATDEELAEESGIPAEKIADLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSAEN 240 Query: 255 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 314 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 241 AVISELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 Query: 315 VMCKLRHGERADRLRSYAS 333 VM KLR+GERADRLRSYAS Sbjct: 301 VMAKLRNGERADRLRSYAS 319 >tr|A0QVZ5|A0QVZ5_MYCS2 Tax_Id=246196 RecName: Full=RNA polymerase sigma factor;[Mycobacterium smegmatis] Length = 319 Score = 566 bits (1458), Expect = e-159 Identities = 291/319 (91%), Positives = 303/319 (94%) Query: 15 IARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLAT 74 +A RVD+DLDAQSPAADLVRVYLNGIGKTALLNA EVELAKRIEAGLYA+HLL T Sbjct: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 Query: 75 RKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 134 +KRLG+ RKR+L AVVRDG ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 135 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 194 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 195 LGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 254 LGREATDEELA ESGIPVEKINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAEN Sbjct: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 Query: 255 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 314 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 Query: 315 VMCKLRHGERADRLRSYAS 333 VM KLR+GERADRLRSYAS Sbjct: 301 VMAKLRNGERADRLRSYAS 319 >tr|Q59553|Q59553_MYCSM Tax_Id=1772 (mysB)RecName: Full=RNA polymerase sigma factor;[Mycobacterium smegmatis] Length = 319 Score = 557 bits (1435), Expect = e-157 Identities = 287/319 (89%), Positives = 300/319 (94%) Query: 15 IARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLAT 74 +A RVD+DLDAQSPAADLVRVYLNGIGKTALLNA EVELAKRIEAGLYA+HLL T Sbjct: 1 MANATTSRVDTDLDAQSPAADLVRVYLNGIGKTALLNAADEVELAKRIEAGLYAQHLLDT 60 Query: 75 RKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 134 +KRLG+ RKR+L AVVRDG ARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI Sbjct: 61 KKRLGEARKRDLQAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLI 120 Query: 135 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 194 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN Sbjct: 121 RAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQN 180 Query: 195 LGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAEN 254 LGREATDEELA ESGIPVEKINDLLEHSRDPVSLDMPVG++EEAPLGDFIED+EAMSAEN Sbjct: 181 LGREATDEELAEESGIPVEKINDLLEHSRDPVSLDMPVGTDEEAPLGDFIEDSEAMSAEN 240 Query: 255 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 314 AVI+ELLHTDIR VLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+ Sbjct: 241 AVISELLHTDIRYVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERE 300 Query: 315 VMCKLRHGERADRLRSYAS 333 VM KLR+GERAD+ YAS Sbjct: 301 VMAKLRNGERADQPAVYAS 319 >tr|B1MCY5|B1MCY5_MYCA9 Tax_Id=561007 RecName: Full=RNA polymerase sigma factor;[Mycobacterium abscessus] Length = 323 Score = 540 bits (1390), Expect = e-151 Identities = 277/323 (85%), Positives = 295/323 (91%) Query: 11 MAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEH 70 MA R DLDAQSPAADLVRVYLNGIGKTALL AE EVELAKRIEAGLYA+H Sbjct: 1 MANATTRPARTTESEDLDAQSPAADLVRVYLNGIGKTALLTAEDEVELAKRIEAGLYAQH 60 Query: 71 LLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 130 LL T+KRLG+ RK++LA +VR+G AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN Sbjct: 61 LLDTKKRLGEARKKDLAVIVREGNAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120 Query: 131 LGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 190 LGLIRAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE Sbjct: 121 LGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE 180 Query: 191 MHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAM 250 +HQ LGREA+DEELA ESGIPVEKI DLL+HSRDPVSLDMPVG++EEAPLGDFIED EAM Sbjct: 181 LHQRLGREASDEELAEESGIPVEKIGDLLDHSRDPVSLDMPVGTDEEAPLGDFIEDTEAM 240 Query: 251 SAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQ 310 SAENAVIAELLH+D+RSVLATLDERE QVIRLR+GLDDGQ RTLDQIGKLFGLSRERVRQ Sbjct: 241 SAENAVIAELLHSDVRSVLATLDEREQQVIRLRYGLDDGQARTLDQIGKLFGLSRERVRQ 300 Query: 311 IERDVMCKLRHGERADRLRSYAS 333 IER+VM KLRHG+RA+RLRSYAS Sbjct: 301 IEREVMAKLRHGDRAERLRSYAS 323 >tr|Q5YT68|Q5YT68_NOCFA Tax_Id=37329 (sigB)RecName: Full=RNA polymerase sigma factor;[Nocardia farcinica] Length = 322 Score = 535 bits (1377), Expect = e-150 Identities = 275/310 (88%), Positives = 290/310 (93%) Query: 24 DSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRK 83 DSDLDAQSPAADLVRVYLNGIG+TALL A EVELAKRIEAGLYA+HLL T KRL +K Sbjct: 13 DSDLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYAQHLLETSKRLSAAKK 72 Query: 84 RELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT 143 ++LA +VRDG AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT Sbjct: 73 KDLAMIVRDGQAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT 132 Query: 144 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEE 203 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ LGREATDEE Sbjct: 133 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDEE 192 Query: 204 LAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHT 263 LAAESGIPVEKI DLL+HSRDPVSLDMPVG++EEAPLGDFIED+EA SAE+AVIA LLH Sbjct: 193 LAAESGIPVEKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAESAVIAGLLHH 252 Query: 264 DIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGE 323 D+RSVLATLDERE QVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIER+VM KLR GE Sbjct: 253 DVRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRKGE 312 Query: 324 RADRLRSYAS 333 RADRLR+YAS Sbjct: 313 RADRLRAYAS 322 >tr|C2APA0|C2APA0_TSUPA Tax_Id=521096 RecName: Full=RNA polymerase sigma factor;[Tsukamurella paurometabola DSM 20162] Length = 330 Score = 531 bits (1368), Expect = e-149 Identities = 269/310 (86%), Positives = 293/310 (94%) Query: 24 DSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRK 83 ++DLDAQSPAADLVRVYLNGIG+TALL AE EVELAKRIEAGLYA+HLL T+KRL ++K Sbjct: 21 EADLDAQSPAADLVRVYLNGIGRTALLTAEDEVELAKRIEAGLYAQHLLDTKKRLSASKK 80 Query: 84 RELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT 143 R+LA +VRDG AR+HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY Sbjct: 81 RDLAFIVRDGQAARQHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYA 140 Query: 144 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEE 203 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARI+RE+HQ LGREATD E Sbjct: 141 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDAE 200 Query: 204 LAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHT 263 LAAESGIP EKI DL++HSRDPVSLDMPVGS+EEAPLGDFIEDAEA SAE+AVI+ L+H+ Sbjct: 201 LAAESGIPAEKIADLMDHSRDPVSLDMPVGSDEEAPLGDFIEDAEAASAESAVISTLMHS 260 Query: 264 DIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGE 323 D+RSVLATLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+VM KLR+GE Sbjct: 261 DVRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRNGE 320 Query: 324 RADRLRSYAS 333 RADRLR+YAS Sbjct: 321 RADRLRAYAS 330 >tr|D0LBS2|D0LBS2_GORB4 Tax_Id=526226 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Gordonia bronchialis] Length = 337 Score = 526 bits (1354), Expect = e-147 Identities = 267/310 (86%), Positives = 291/310 (93%) Query: 24 DSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRK 83 + DLDAQSPAADLVRVYLNGIG+TALLNAE EVELAK+IEAGLYA+H+LAT+KRL +K Sbjct: 28 EQDLDAQSPAADLVRVYLNGIGRTALLNAEQEVELAKQIEAGLYAKHVLATKKRLSAAKK 87 Query: 84 RELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT 143 R+LA VVR+G AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY Sbjct: 88 RDLAIVVREGEAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYA 147 Query: 144 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEE 203 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ LGREATDEE Sbjct: 148 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDEE 207 Query: 204 LAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHT 263 LA ESGIP EKI DLL+HSRDPVSLDMPVGS+EEAPLGDFIEDAEA SAE+AVIA L+HT Sbjct: 208 LANESGIPAEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDAEATSAESAVIAGLMHT 267 Query: 264 DIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGE 323 D+R+VLATLDERE QVIR+R+GLDDGQPRTLDQIG++FGLSRERVRQIER+VM KLR G+ Sbjct: 268 DVRAVLATLDEREQQVIRMRYGLDDGQPRTLDQIGRMFGLSRERVRQIEREVMGKLRQGD 327 Query: 324 RADRLRSYAS 333 RA+RLR+YAS Sbjct: 328 RAERLRAYAS 337 >tr|Q0S1K1|Q0S1K1_RHOSR Tax_Id=101510 (sigB)RecName: Full=RNA polymerase sigma factor;[Rhodococcus sp.] Length = 323 Score = 520 bits (1339), Expect = e-145 Identities = 266/309 (86%), Positives = 285/309 (92%) Query: 25 SDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRKR 84 +DLDAQSPAADLVRVYLNGIG+TALL A EVEL+KRIEAGLYA H+L T KRL +KR Sbjct: 15 ADLDAQSPAADLVRVYLNGIGRTALLTAADEVELSKRIEAGLYAAHILETGKRLSPAKKR 74 Query: 85 ELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTK 144 +LA VVR+G AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY K Sbjct: 75 DLATVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAK 134 Query: 145 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEEL 204 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ LGREATD+EL Sbjct: 135 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDEL 194 Query: 205 AAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTD 264 A ESGIP KI DLL+HSRDPVSLDMPVG++EEAPLGDFIED+EA SAENAVIA LLH+D Sbjct: 195 AEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAENAVIAGLLHSD 254 Query: 265 IRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGER 324 +RSVLATLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+VM KLR G+R Sbjct: 255 VRSVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRQGDR 314 Query: 325 ADRLRSYAS 333 A+RLRSYAS Sbjct: 315 AERLRSYAS 323 >tr|C1B3C8|C1B3C8_RHOOB Tax_Id=632772 (sigB)RecName: Full=RNA polymerase sigma factor;[Rhodococcus opacus] Length = 323 Score = 519 bits (1336), Expect = e-145 Identities = 265/309 (85%), Positives = 285/309 (92%) Query: 25 SDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRKR 84 +DLDAQSPAADLVRVYLNGIG+TALL A EVEL+KRIEAGLYA H+L T KRL +KR Sbjct: 15 ADLDAQSPAADLVRVYLNGIGRTALLTAADEVELSKRIEAGLYAAHILETGKRLSPAKKR 74 Query: 85 ELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTK 144 +LA VVR+G AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY K Sbjct: 75 DLATVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAK 134 Query: 145 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEEL 204 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ LGREATD+EL Sbjct: 135 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDEL 194 Query: 205 AAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTD 264 A ESGIP KI DLL+HSRDPVSLDMPVG++EEAPLGDFIED+EA SAENAVIA LLH+D Sbjct: 195 AEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAENAVIAGLLHSD 254 Query: 265 IRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGER 324 +R+VLATLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+VM KLR G+R Sbjct: 255 VRTVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRQGDR 314 Query: 325 ADRLRSYAS 333 A+RLRSYAS Sbjct: 315 AERLRSYAS 323 >tr|C6L2K1|C6L2K1_RHOOP Tax_Id=37919 (sigB)RecName: Full=RNA polymerase sigma factor;[Rhodococcus opacus] Length = 323 Score = 519 bits (1336), Expect = e-145 Identities = 265/309 (85%), Positives = 285/309 (92%) Query: 25 SDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRKR 84 +DLDAQSPAADLVRVYLNGIG+TALL A EVEL+KRIEAGLYA H+L T KRL +KR Sbjct: 15 ADLDAQSPAADLVRVYLNGIGRTALLTAADEVELSKRIEAGLYAAHILETGKRLSPAKKR 74 Query: 85 ELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTK 144 +LA VVR+G AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY K Sbjct: 75 DLATVVREGQSARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAK 134 Query: 145 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEEL 204 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ LGREATD+EL Sbjct: 135 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDEL 194 Query: 205 AAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTD 264 A ESGIP KI DLL+HSRDPVSLDMPVG++EEAPLGDFIED+EA SAENAVIA LLH+D Sbjct: 195 AEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAENAVIAGLLHSD 254 Query: 265 IRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGER 324 +R+VLATLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+VM KLR G+R Sbjct: 255 VRTVLATLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRQGDR 314 Query: 325 ADRLRSYAS 333 A+RLRSYAS Sbjct: 315 AERLRSYAS 323 >tr|Q8VM94|Q8VM94_RHOFA Tax_Id=1828 (rofB)RecName: Full=RNA polymerase sigma factor;[Rhodococcus fascians] Length = 323 Score = 518 bits (1333), Expect = e-145 Identities = 265/310 (85%), Positives = 286/310 (92%) Query: 24 DSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRK 83 D+DLDAQSPAADLVRVYLNGIG+TALL AE EV+LAKRIEAGLYA+ +L KRL +K Sbjct: 14 DADLDAQSPAADLVRVYLNGIGRTALLTAEEEVDLAKRIEAGLYAKQVLENTKRLSAVKK 73 Query: 84 RELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT 143 R LA +VRDG+ AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY Sbjct: 74 RNLAIIVRDGSAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYA 133 Query: 144 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEE 203 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ LGREATDEE Sbjct: 134 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDEE 193 Query: 204 LAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHT 263 L++ESGI VEKI DLL+HSRDPVSLDMPVGS+EEAPLGDFIED+EA SAENAVIA LLH+ Sbjct: 194 LSSESGIAVEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFIEDSEATSAENAVIAGLLHS 253 Query: 264 DIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGE 323 D+R VL TLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+VM KLR G+ Sbjct: 254 DVRVVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMVKLRQGD 313 Query: 324 RADRLRSYAS 333 RA++LRSYAS Sbjct: 314 RAEKLRSYAS 323 >tr|C0ZYS7|C0ZYS7_RHOE4 Tax_Id=234621 (sigB)RecName: Full=RNA polymerase sigma factor;[Rhodococcus erythropolis] Length = 323 Score = 517 bits (1332), Expect = e-145 Identities = 265/309 (85%), Positives = 285/309 (92%) Query: 25 SDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRKR 84 +DLDAQSPAADLVRVYLNGIG+TALL A EVELAKRIEAGLYA H+LAT KRL +KR Sbjct: 15 ADLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYASHVLATGKRLTVAKKR 74 Query: 85 ELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTK 144 +LA +VR+G AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY K Sbjct: 75 DLATIVREGQSARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAK 134 Query: 145 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEEL 204 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ LGREATD+EL Sbjct: 135 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDEL 194 Query: 205 AAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTD 264 A ESGIP KI DLL+HSRDPVSLDMPVG++EEAPLGDFIED+EA SAENAVIA LLH+D Sbjct: 195 AEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAENAVIAGLLHSD 254 Query: 265 IRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGER 324 +RSVL TLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+VM KLR G+R Sbjct: 255 VRSVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRVGDR 314 Query: 325 ADRLRSYAS 333 A++LRSYAS Sbjct: 315 AEKLRSYAS 323 >tr|C3JLK3|C3JLK3_RHOER Tax_Id=596309 RecName: Full=RNA polymerase sigma factor;[Rhodococcus erythropolis SK121] Length = 323 Score = 517 bits (1332), Expect = e-145 Identities = 265/309 (85%), Positives = 285/309 (92%) Query: 25 SDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRKR 84 +DLDAQSPAADLVRVYLNGIG+TALL A EVELAKRIEAGLYA H+LAT KRL +KR Sbjct: 15 ADLDAQSPAADLVRVYLNGIGRTALLTAADEVELAKRIEAGLYASHVLATGKRLTVAKKR 74 Query: 85 ELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTK 144 +LA +VR+G AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY K Sbjct: 75 DLATIVREGQSARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAK 134 Query: 145 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEEL 204 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRE+HQ LGREATD+EL Sbjct: 135 GFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDEL 194 Query: 205 AAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTD 264 A ESGIP KI DLL+HSRDPVSLDMPVG++EEAPLGDFIED+EA SAENAVIA LLH+D Sbjct: 195 AEESGIPAHKIADLLDHSRDPVSLDMPVGNDEEAPLGDFIEDSEATSAENAVIAGLLHSD 254 Query: 265 IRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGER 324 +RSVL TLDERE QVIRLR+GLDDGQPRTLDQIGKLFGLSRERVRQIER+VM KLR G+R Sbjct: 255 VRSVLGTLDEREQQVIRLRYGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRVGDR 314 Query: 325 ADRLRSYAS 333 A++LRSYAS Sbjct: 315 AEKLRSYAS 323 >tr|C7MZ75|C7MZ75_SACVD Tax_Id=471857 RecName: Full=RNA polymerase sigma factor;[Saccharomonospora viridis] Length = 342 Score = 496 bits (1278), Expect = e-138 Identities = 250/310 (80%), Positives = 281/310 (90%) Query: 24 DSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRK 83 ++DLDAQ PAADLVRVYLNGIGKTALL AE EV+LAKRIEAG++A+H+L T L + RK Sbjct: 33 EADLDAQGPAADLVRVYLNGIGKTALLTAEEEVDLAKRIEAGVFAQHVLDTSDDLSEERK 92 Query: 84 RELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT 143 EL+ VVRDG EA+ HLL+ANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA+EKFDYT Sbjct: 93 AELSEVVRDGEEAKNHLLQANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYT 152 Query: 144 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEE 203 KGFKFSTYATWWIRQAITRGMADQ RTIRLPVHLVEQVNKLARIKR++HQ LGREAT EE Sbjct: 153 KGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQRLGREATHEE 212 Query: 204 LAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHT 263 LAAESGI +K+ DLL+H+RDPVSLDMPVG++E+APLGDFIED+EA +AEN+VI+ LL Sbjct: 213 LAAESGIAEKKVADLLDHARDPVSLDMPVGADEDAPLGDFIEDSEAANAENSVISTLLQD 272 Query: 264 DIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGE 323 D+R VLATLD+RE VIRLR+GLDDGQPRTLDQIGK F LSRERVRQIER+VM KLRHGE Sbjct: 273 DLRRVLATLDDREEHVIRLRYGLDDGQPRTLDQIGKHFSLSRERVRQIEREVMAKLRHGE 332 Query: 324 RADRLRSYAS 333 RAD+LR+YAS Sbjct: 333 RADKLRAYAS 342 >tr|A4FAM7|A4FAM7_SACEN Tax_Id=405948 (sigB)RecName: Full=RNA polymerase sigma factor;[Saccharopolyspora erythraea] Length = 324 Score = 489 bits (1258), Expect = e-136 Identities = 243/311 (78%), Positives = 279/311 (89%) Query: 23 VDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNR 82 +++DLD Q P+ADLVRVYLNGIG+TALL A+ EV+LAKRIEAG++A H+L T +L R Sbjct: 14 IEADLDTQGPSADLVRVYLNGIGRTALLTAQEEVDLAKRIEAGVFANHVLETSGKLSPER 73 Query: 83 KRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 142 + +L AVVRDG A+ HL+EANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA+EKFDY Sbjct: 74 RSDLKAVVRDGVLAKNHLMEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDY 133 Query: 143 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 202 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNK+ARIKR++HQ LGREATDE Sbjct: 134 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKIARIKRDLHQKLGREATDE 193 Query: 203 ELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 262 ELA E+G+ VEK+ DLL+HSRDPVSLDMPVG+EE+APLGDFIEDAE+ AENAVI+ L Sbjct: 194 ELANEAGLTVEKVADLLDHSRDPVSLDMPVGAEEDAPLGDFIEDAESADAENAVISGFLQ 253 Query: 263 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHG 322 D+R VL+TL+ERE VIR+R+GLDDGQPRTLDQIGK FGLSRERVRQIER+VM KLR G Sbjct: 254 DDLRRVLSTLEEREQAVIRMRYGLDDGQPRTLDQIGKAFGLSRERVRQIEREVMSKLRQG 313 Query: 323 ERADRLRSYAS 333 +RAD+LR+YAS Sbjct: 314 DRADKLRAYAS 324 >tr|C6WAH7|C6WAH7_ACTMD Tax_Id=446462 RecName: Full=RNA polymerase sigma factor;[Actinosynnema mirum] Length = 330 Score = 484 bits (1245), Expect = e-135 Identities = 247/311 (79%), Positives = 275/311 (88%) Query: 23 VDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNR 82 VD DLDAQ PAADLVRVYLNGIGKTALL A EVELAKRIEAG++A H+L T L R Sbjct: 20 VDLDLDAQGPAADLVRVYLNGIGKTALLTAAQEVELAKRIEAGVFAHHVLETTTALNAGR 79 Query: 83 KRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY 142 EL A+VRDG A+ HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA+EKFDY Sbjct: 80 ADELRALVRDGLRAKNHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDY 139 Query: 143 TKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDE 202 TKGFKFSTYATWWIRQAITRGMADQ RTIRLPVHLVEQVNKLARIKR++HQ LGREAT+E Sbjct: 140 TKGFKFSTYATWWIRQAITRGMADQGRTIRLPVHLVEQVNKLARIKRDLHQQLGREATNE 199 Query: 203 ELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLH 262 ELAAESG+ K++DLL+H+RDPVSLDMPVG+EE+APLGDFIED++A AE+AVI+ LL Sbjct: 200 ELAAESGLSPTKVSDLLDHARDPVSLDMPVGAEEDAPLGDFIEDSDATDAESAVISGLLQ 259 Query: 263 TDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHG 322 D+R VLATL++RE VIRLR+GL+DGQPRTLDQIGK FGLSRERVRQIER+VM KLR G Sbjct: 260 DDLRRVLATLEQREQAVIRLRYGLEDGQPRTLDQIGKQFGLSRERVRQIEREVMSKLRQG 319 Query: 323 ERADRLRSYAS 333 ERA +LR+YAS Sbjct: 320 ERAAKLRAYAS 330 >tr|C4LJ13|C4LJ13_CORK4 Tax_Id=645127 (sigB)RecName: Full=RNA polymerase sigma factor;[Corynebacterium kroppenstedtii] Length = 326 Score = 477 bits (1228), Expect = e-133 Identities = 243/303 (80%), Positives = 275/303 (90%) Query: 30 QSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRKRELAAV 89 ++P+ADLVRVYLNGIG+TALLNAE EVEL++RIEAGLYA+HLL + ++ ++KR+L AV Sbjct: 24 ENPSADLVRVYLNGIGRTALLNAEDEVELSQRIEAGLYAQHLLESDEQFTPSKKRDLKAV 83 Query: 90 VRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 149 +DG AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA+EKFDYTKGFKFS Sbjct: 84 AKDGRAARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGFKFS 143 Query: 150 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESG 209 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q+LGREAT+EELA ESG Sbjct: 144 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNEELAEESG 203 Query: 210 IPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 269 I KI+ LL+ SRDPVSLDMPVG++EEAPLGDFIED+EA AE AV+A L H+DIR+VL Sbjct: 204 IDESKIDLLLKQSRDPVSLDMPVGTDEEAPLGDFIEDSEATDAEEAVVASLRHSDIRTVL 263 Query: 270 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLR 329 ATL++RE VIRLRFGLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR GERAD+LR Sbjct: 264 ATLEKREQDVIRLRFGLDDGVPRTLDQIGREFGLSRERVRQIEREVMAKLRKGERADKLR 323 Query: 330 SYA 332 SYA Sbjct: 324 SYA 326 >tr|C8XG81|C8XG81_NAKMY Tax_Id=479431 SubName: Full=RNA polymerase, sigma 70 subunit, RpoD subfamily; Flags: Precursor;[Nakamurella multipartita] Length = 334 Score = 471 bits (1212), Expect = e-131 Identities = 238/310 (76%), Positives = 270/310 (87%) Query: 24 DSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRK 83 D DLDAQ P+ADLVRVYLNGIGKTALL AE EVELAKRIEAG++A H+L + + R+ Sbjct: 25 DEDLDAQGPSADLVRVYLNGIGKTALLTAEQEVELAKRIEAGVFAAHVLESDVEMSPQRR 84 Query: 84 RELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYT 143 ++L VVRDG AR HLL ANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRA+EKFDYT Sbjct: 85 KDLRMVVRDGGRARNHLLVANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYT 144 Query: 144 KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEE 203 KGFKFSTYATWWIRQAI+RGMADQ RTIRLPVHLVEQVNKL+R+KRE+HQ LGR+AT E Sbjct: 145 KGFKFSTYATWWIRQAISRGMADQGRTIRLPVHLVEQVNKLSRLKRELHQQLGRDATLAE 204 Query: 204 LAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHT 263 LA ESGIP EKI DLL+H+RDPVSLDMPVGS+EEAPLGDFIED+E+ SAE AV+A +H Sbjct: 205 LAHESGIPEEKIADLLDHARDPVSLDMPVGSDEEAPLGDFIEDSESTSAEAAVVAGFMHD 264 Query: 264 DIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGE 323 DI VL TLD+RE V+RLR+GLDDG+PRTLD+IG+ FG+SRERVRQIERD M KLR G+ Sbjct: 265 DINRVLRTLDDREQTVVRLRYGLDDGRPRTLDEIGRHFGISRERVRQIERDSMAKLRVGD 324 Query: 324 RADRLRSYAS 333 R++ LRSYAS Sbjct: 325 RSEVLRSYAS 334 >tr|Q4JV99|Q4JV99_CORJK Tax_Id=306537 (sigB)RecName: Full=RNA polymerase sigma factor;[Corynebacterium jeikeium] Length = 343 Score = 468 bits (1204), Expect = e-130 Identities = 236/303 (77%), Positives = 268/303 (88%) Query: 30 QSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRKRELAAV 89 ++P+ADLVRVYLNGIGKTALL AE EVEL+KRIE GLY+E+LL+ ++L +KR+L + Sbjct: 40 ENPSADLVRVYLNGIGKTALLTAEDEVELSKRIEVGLYSEYLLSNAEKLTRAKKRDLKVL 99 Query: 90 VRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 149 R+G AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS Sbjct: 100 AREGKAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 159 Query: 150 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESG 209 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q LGREAT+EEL+ ESG Sbjct: 160 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEELSEESG 219 Query: 210 IPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 269 I KI LL+ SRDPVSLDMPVGS+EEAPLGDFIED++A AE AV+A L H+D+R+VL Sbjct: 220 IEESKIEMLLKQSRDPVSLDMPVGSDEEAPLGDFIEDSDATDAETAVVASLRHSDVRAVL 279 Query: 270 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLR 329 TL+ERE VI+LR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR G+RAD+LR Sbjct: 280 GTLEEREQDVIKLRYGLDDGMPRTLDQIGRRFGLSRERVRQIEREVMAKLREGDRADKLR 339 Query: 330 SYA 332 YA Sbjct: 340 EYA 342 >tr|C8RTK2|C8RTK2_CORJE Tax_Id=525262 (sigB)SubName: Full=RNA polymerase principal sigma factor SigB;[Corynebacterium jeikeium ATCC 43734] Length = 343 Score = 468 bits (1204), Expect = e-130 Identities = 236/303 (77%), Positives = 268/303 (88%) Query: 30 QSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRKRELAAV 89 ++P+ADLVRVYLNGIGKTALL AE EVEL+KRIE GLY+E+LL+ ++L +KR+L + Sbjct: 40 ENPSADLVRVYLNGIGKTALLTAEDEVELSKRIEVGLYSEYLLSNAEKLTRAKKRDLKVL 99 Query: 90 VRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 149 R+G AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS Sbjct: 100 AREGKAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 159 Query: 150 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESG 209 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q LGREAT+EEL+ ESG Sbjct: 160 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEELSEESG 219 Query: 210 IPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 269 I KI LL+ SRDPVSLDMPVGS+EEAPLGDFIED++A AE AV+A L H+D+R+VL Sbjct: 220 IEESKIEMLLKQSRDPVSLDMPVGSDEEAPLGDFIEDSDATDAETAVVASLRHSDVRAVL 279 Query: 270 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLR 329 TL+ERE VI+LR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR G+RAD+LR Sbjct: 280 GTLEEREQDVIKLRYGLDDGMPRTLDQIGRRFGLSRERVRQIEREVMAKLREGDRADKLR 339 Query: 330 SYA 332 YA Sbjct: 340 EYA 342 >tr|C2CP37|C2CP37_CORST Tax_Id=525268 (sigB)RecName: Full=RNA polymerase sigma factor;[Corynebacterium striatum ATCC 6940] Length = 337 Score = 466 bits (1199), Expect = e-129 Identities = 239/302 (79%), Positives = 265/302 (87%) Query: 31 SPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRKRELAAVV 90 +P+ADLVRVYLNGIGKTALL+AE EVELA+RIE GLYAE+ LA +++ KR+L +V Sbjct: 35 NPSADLVRVYLNGIGKTALLSAEDEVELAQRIEVGLYAEYKLANAEKITRAEKRDLKILV 94 Query: 91 RDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST 150 R+G +AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY KGFKFST Sbjct: 95 REGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFST 154 Query: 151 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGI 210 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q+LGREAT+EELA ESGI Sbjct: 155 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATNEELAEESGI 214 Query: 211 PVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLA 270 KI LL SRDPVSLDMPVG++EEAPLGDFIEDAEA AE AV+A + H+DIR V+ Sbjct: 215 EESKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDAEATDAETAVVAAMRHSDIRGVIE 274 Query: 271 TLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLRS 330 TL+ERE VIRLR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR G RADRLR Sbjct: 275 TLEEREQDVIRLRYGLDDGVPRTLDQIGRKFGLSRERVRQIEREVMAKLRDGNRADRLRE 334 Query: 331 YA 332 YA Sbjct: 335 YA 336 >tr|C3PGV0|C3PGV0_CORA7 Tax_Id=548476 (sigB)RecName: Full=RNA polymerase sigma factor;[Corynebacterium aurimucosum] Length = 331 Score = 465 bits (1197), Expect = e-129 Identities = 244/331 (73%), Positives = 275/331 (83%), Gaps = 4/331 (1%) Query: 2 TAQADREGEMAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKR 61 ++ A + E Q + RG +D +P+ADLVRVYLNGIGKTALL+AE EVELA+ Sbjct: 4 SSAASVQDEDGQEVDRGSRRNQTND----NPSADLVRVYLNGIGKTALLSAEDEVELAQT 59 Query: 62 IEAGLYAEHLLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMP 121 IE GLYAE+ LA ++L KR+L + R+G +AR HLLEANLRLVVSLAKRYTGRGMP Sbjct: 60 IEVGLYAEYKLANAEKLTRAEKRDLKILAREGKKARSHLLEANLRLVVSLAKRYTGRGMP 119 Query: 122 LLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQV 181 LLDLIQEGNLGLIRAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQV Sbjct: 120 LLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQV 179 Query: 182 NKLARIKREMHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLG 241 NKL+RIKREM+Q+LGREAT+EELA ESGI KI LL SRDPVSLDMPVG++EEAPLG Sbjct: 180 NKLSRIKREMYQSLGREATNEELAEESGIEESKIEMLLRQSRDPVSLDMPVGTDEEAPLG 239 Query: 242 DFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLF 301 DFIEDAEA AE AV+A + H+DIRSV+ +L+ERE VIRLR+GLDDG PRTLDQIG+ F Sbjct: 240 DFIEDAEATDAETAVVASMRHSDIRSVIGSLEEREQDVIRLRYGLDDGVPRTLDQIGRKF 299 Query: 302 GLSRERVRQIERDVMCKLRHGERADRLRSYA 332 GLSRERVRQIER+VM KLR G RADRLR YA Sbjct: 300 GLSRERVRQIEREVMAKLREGNRADRLREYA 330 >tr|B1VDF6|B1VDF6_CORU7 Tax_Id=504474 RecName: Full=RNA polymerase sigma factor;[Corynebacterium urealyticum] Length = 340 Score = 463 bits (1191), Expect = e-128 Identities = 237/303 (78%), Positives = 268/303 (88%) Query: 30 QSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRKRELAAV 89 ++P+ADLVRVYLNGIGKTALL AE EVEL++RIEAGLYAE LL + + L +KR++ + Sbjct: 37 ENPSADLVRVYLNGIGKTALLTAEDEVELSQRIEAGLYAEQLLKSGEPLTRAKKRDVKIL 96 Query: 90 VRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 149 R+G AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY KGFKFS Sbjct: 97 AREGKAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYKKGFKFS 156 Query: 150 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESG 209 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q+LGREAT EELA ESG Sbjct: 157 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATYEELAEESG 216 Query: 210 IPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 269 IP ++I L++ SRDPVSLDMPVG++EEAPLGDFIED+EA AE AV+A L H+DIRSVL Sbjct: 217 IPEDRIEMLMKQSRDPVSLDMPVGTDEEAPLGDFIEDSEAEDAEAAVVASLRHSDIRSVL 276 Query: 270 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLR 329 ATL++RE VI LR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR G+RAD+LR Sbjct: 277 ATLEQREQDVITLRYGLDDGLPRTLDQIGRQFGLSRERVRQIEREVMAKLREGQRADKLR 336 Query: 330 SYA 332 YA Sbjct: 337 EYA 339 >sp|P33118|RPSB_CORDI Tax_Id=1717 (sigB)RecName: Full=RNA polymerase sigma factor sigB;[Corynebacterium diphtheriae] Length = 329 Score = 458 bits (1179), Expect = e-127 Identities = 244/333 (73%), Positives = 280/333 (84%), Gaps = 6/333 (1%) Query: 1 MTAQADREGEMAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAK 60 MT+ +D E + + RG +D +P+ADLVRVYLNGIGKTALLNAE EVELA+ Sbjct: 1 MTSPSDVEAS-TETVDRGSRRNQTND----NPSADLVRVYLNGIGKTALLNAEDEVELAQ 55 Query: 61 RIEAGLYAEHLLA-TRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRG 119 IE GLYAE+LL +++ L KR+L +V++G +AR HLLEANLRLVVSLAKRYTGRG Sbjct: 56 TIEVGLYAEYLLENSQEPLTRAMKRDLKVLVKEGRKARSHLLEANLRLVVSLAKRYTGRG 115 Query: 120 MPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVE 179 MPLLDLIQEGNLGLIRAMEKFDY+KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVE Sbjct: 116 MPLLDLIQEGNLGLIRAMEKFDYSKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVE 175 Query: 180 QVNKLARIKREMHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAP 239 QVNKL+RIKREM+Q LGREAT+EELA ESGI KI LL SRDPVSLDMPVG++EEAP Sbjct: 176 QVNKLSRIKREMYQQLGREATNEELAEESGIEESKIEMLLRQSRDPVSLDMPVGADEEAP 235 Query: 240 LGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGK 299 LGDFIED+EA AE+AV+A L H+DIR+VL TL++RE VIRLR+GLDDG PRTLDQIG+ Sbjct: 236 LGDFIEDSEATDAESAVVASLRHSDIRTVLDTLEQREQDVIRLRYGLDDGVPRTLDQIGR 295 Query: 300 LFGLSRERVRQIERDVMCKLRHGERADRLRSYA 332 FGLSRERVRQIER+VM KLR G RA++LR+YA Sbjct: 296 QFGLSRERVRQIEREVMSKLRDGARAEKLRAYA 328 >tr|C6RAB0|C6RAB0_9CORY Tax_Id=553206 RecName: Full=RNA polymerase sigma factor;[Corynebacterium tuberculostearicum SK141] Length = 365 Score = 458 bits (1178), Expect = e-127 Identities = 235/302 (77%), Positives = 262/302 (86%) Query: 31 SPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRKRELAAVV 90 +P+ADLVRVYLNGIGKTALL+AE EVELA+ IE GLYAE+ L ++L KR+L + Sbjct: 63 NPSADLVRVYLNGIGKTALLSAEDEVELAQAIEVGLYAEYKLNNAEKLTRAEKRDLKILA 122 Query: 91 RDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST 150 R+G +AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY KGFKFST Sbjct: 123 REGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFST 182 Query: 151 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGI 210 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q+LGREAT+EEL+ ESGI Sbjct: 183 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATNEELSEESGI 242 Query: 211 PVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLA 270 KI LL SRDPVSLDMPVG++EEAPLGDFIEDAEA AE AV+A + H+DIR V+ Sbjct: 243 DENKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDAEATDAETAVVASMRHSDIRGVID 302 Query: 271 TLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLRS 330 TL++RE VIRLR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR G RADRLR Sbjct: 303 TLEKREQDVIRLRYGLDDGVPRTLDQIGRRFGLSRERVRQIEREVMAKLRDGNRADRLRE 362 Query: 331 YA 332 YA Sbjct: 363 YA 364 >tr|C2BP49|C2BP49_9CORY Tax_Id=525264 RecName: Full=RNA polymerase sigma factor;[Corynebacterium pseudogenitalium ATCC 33035] Length = 337 Score = 458 bits (1178), Expect = e-127 Identities = 235/302 (77%), Positives = 262/302 (86%) Query: 31 SPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRKRELAAVV 90 +P+ADLVRVYLNGIGKTALL+AE EVELA+ IE GLYAE+ L ++L KR+L + Sbjct: 35 NPSADLVRVYLNGIGKTALLSAEDEVELAQAIEVGLYAEYKLNNAEKLTRAEKRDLKILA 94 Query: 91 RDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST 150 R+G +AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY KGFKFST Sbjct: 95 REGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFST 154 Query: 151 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGI 210 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q+LGREAT+EEL+ ESGI Sbjct: 155 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATNEELSEESGI 214 Query: 211 PVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLA 270 KI LL SRDPVSLDMPVG++EEAPLGDFIEDAEA AE AV+A + H+DIR V+ Sbjct: 215 DENKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDAEATDAETAVVASMRHSDIRGVID 274 Query: 271 TLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLRS 330 TL++RE VIRLR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR G RADRLR Sbjct: 275 TLEKREQDVIRLRYGLDDGVPRTLDQIGRRFGLSRERVRQIEREVMAKLRDGNRADRLRE 334 Query: 331 YA 332 YA Sbjct: 335 YA 336 >tr|C0WKT8|C0WKT8_9CORY Tax_Id=525260 (sigB)RecName: Full=RNA polymerase sigma factor;[Corynebacterium accolens ATCC 49725] Length = 337 Score = 456 bits (1174), Expect = e-126 Identities = 242/331 (73%), Positives = 271/331 (81%), Gaps = 8/331 (2%) Query: 2 TAQADREGEMAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKR 61 TA D E Q + RG +D +P+ADLVRVYLNGIGKT LL+AE EVELA+ Sbjct: 14 TATTDEE----QEVDRGSRRNQTND----NPSADLVRVYLNGIGKTDLLSAEDEVELAQT 65 Query: 62 IEAGLYAEHLLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMP 121 IE GLYAE+ L ++L KR+L + R+G +AR HLLEANLRLVVSLAKRYTGRGMP Sbjct: 66 IEVGLYAEYKLNNAEKLTRAEKRDLKILAREGKKARSHLLEANLRLVVSLAKRYTGRGMP 125 Query: 122 LLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQV 181 LLDLIQEGNLGLIRAMEKFDY KGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQV Sbjct: 126 LLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQV 185 Query: 182 NKLARIKREMHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLG 241 NKL+RIKREM+Q+LGREAT+EEL+ ESGI KI LL SRDPVSLDMPVG++EEAPLG Sbjct: 186 NKLSRIKREMYQSLGREATNEELSEESGIDENKIEMLLRQSRDPVSLDMPVGTDEEAPLG 245 Query: 242 DFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLF 301 DFIEDAEA AE AV+A + H+DIR V+ TL++RE VIRLR+GLDDG PRTLDQIG+ F Sbjct: 246 DFIEDAEATDAETAVVASMRHSDIRGVIDTLEKREQDVIRLRYGLDDGVPRTLDQIGRRF 305 Query: 302 GLSRERVRQIERDVMCKLRHGERADRLRSYA 332 GLSRERVRQIER+VM KLR G RADRLR YA Sbjct: 306 GLSRERVRQIEREVMAKLRDGNRADRLREYA 336 >tr|A4QES7|A4QES7_CORGB Tax_Id=340322 RecName: Full=RNA polymerase sigma factor;[Corynebacterium glutamicum] Length = 331 Score = 456 bits (1173), Expect = e-126 Identities = 237/303 (78%), Positives = 262/303 (86%), Gaps = 1/303 (0%) Query: 31 SPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKR-LGDNRKRELAAV 89 +P+ DLVRVYLNGIGKTALL AE EVELA+ IE GLYAEHLL + L KR+L + Sbjct: 28 NPSQDLVRVYLNGIGKTALLTAEDEVELAQTIEVGLYAEHLLKNSEEPLTRAMKRDLKVL 87 Query: 90 VRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 149 +DG +AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY+KGFKFS Sbjct: 88 AKDGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGFKFS 147 Query: 150 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESG 209 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q+LGREAT+EELA ESG Sbjct: 148 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNEELAEESG 207 Query: 210 IPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 269 I KI LL SRDPVSLDMPVG++EEAPLGDFIED+EA AE+AV+A + H+DIR+VL Sbjct: 208 IEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASMRHSDIRAVL 267 Query: 270 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLR 329 TL+ RE VIRLR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR GERA RLR Sbjct: 268 NTLEPREQDVIRLRYGLDDGVPRTLDQIGRRFGLSRERVRQIEREVMSKLRDGERASRLR 327 Query: 330 SYA 332 YA Sbjct: 328 EYA 330 >tr|Q9ANT6|Q9ANT6_9CORY Tax_Id=92706 (sigB)RecName: Full=RNA polymerase sigma factor;[[Brevibacterium] flavum] Length = 331 Score = 456 bits (1173), Expect = e-126 Identities = 237/303 (78%), Positives = 262/303 (86%), Gaps = 1/303 (0%) Query: 31 SPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKR-LGDNRKRELAAV 89 +P+ DLVRVYLNGIGKTALL AE EVELA+ IE GLYAEHLL + L KR+L + Sbjct: 28 NPSQDLVRVYLNGIGKTALLTAEDEVELAQTIEVGLYAEHLLKNSEEPLTRAMKRDLKVL 87 Query: 90 VRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 149 +DG +AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY+KGFKFS Sbjct: 88 AKDGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGFKFS 147 Query: 150 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESG 209 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q+LGREAT+EELA ESG Sbjct: 148 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNEELAEESG 207 Query: 210 IPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 269 I KI LL SRDPVSLDMPVG++EEAPLGDFIED+EA AE+AV+A + H+DIR+VL Sbjct: 208 IEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASMRHSDIRAVL 267 Query: 270 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLR 329 TL+ RE VIRLR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR GERA RLR Sbjct: 268 NTLEPREQDVIRLRYGLDDGVPRTLDQIGRRFGLSRERVRQIEREVMSKLRDGERASRLR 327 Query: 330 SYA 332 YA Sbjct: 328 EYA 330 >tr|Q79VF3|Q79VF3_CORGL Tax_Id=1718 (sigB)RecName: Full=RNA polymerase sigma factor;[Corynebacterium glutamicum] Length = 331 Score = 455 bits (1170), Expect = e-126 Identities = 236/303 (77%), Positives = 262/303 (86%), Gaps = 1/303 (0%) Query: 31 SPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKR-LGDNRKRELAAV 89 +P+ DLVRVYLNGIGKTALL AE EVELA+ IE GLYAEHLL + L KR+L + Sbjct: 28 NPSQDLVRVYLNGIGKTALLTAEDEVELAQTIEVGLYAEHLLKNSEEPLTRAMKRDLKVL 87 Query: 90 VRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 149 +DG +AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY+KGFKFS Sbjct: 88 AKDGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGFKFS 147 Query: 150 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESG 209 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKRE++Q+LGREAT+EELA ESG Sbjct: 148 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKRELYQHLGREATNEELAEESG 207 Query: 210 IPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 269 I KI LL SRDPVSLDMPVG++EEAPLGDFIED+EA AE+AV+A + H+DIR+VL Sbjct: 208 IEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASMRHSDIRAVL 267 Query: 270 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLR 329 TL+ RE VIRLR+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR GERA RLR Sbjct: 268 NTLEPREQDVIRLRYGLDDGVPRTLDQIGRRFGLSRERVRQIEREVMSKLRDGERASRLR 327 Query: 330 SYA 332 YA Sbjct: 328 EYA 330 >tr|C0E2Q6|C0E2Q6_9CORY Tax_Id=566549 RecName: Full=RNA polymerase sigma factor;[Corynebacterium matruchotii ATCC 33806] Length = 391 Score = 452 bits (1162), Expect = e-125 Identities = 233/303 (76%), Positives = 264/303 (87%), Gaps = 1/303 (0%) Query: 31 SPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLA-TRKRLGDNRKRELAAV 89 +P+ADLVRVYLNGIGKTALL AE EV LA+ IE GLYAE+LL + + L +KR+L + Sbjct: 88 NPSADLVRVYLNGIGKTALLTAEDEVHLAQTIEVGLYAEYLLTDSDEPLTRAKKRDLKVL 147 Query: 90 VRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFS 149 V++G +AR HLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDY KGFKFS Sbjct: 148 VKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFS 207 Query: 150 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESG 209 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL+RIKREM+Q LGREAT+EELA ESG Sbjct: 208 TYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEELAEESG 267 Query: 210 IPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVL 269 I KI LL SRDPVSLDMPVG++EEAPLGDFIED+EA AE+AV+A L H+DIR V+ Sbjct: 268 IDESKIELLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEAADAESAVVASLRHSDIRDVI 327 Query: 270 ATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLR 329 TL++RE VIR+R+GLDDG PRTLDQIG+ FGLSRERVRQIER+VM KLR G+RA++LR Sbjct: 328 GTLEDREQDVIRMRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMRKLRDGQRAEKLR 387 Query: 330 SYA 332 YA Sbjct: 388 EYA 390 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.319 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 2,298,067,287 Number of extensions: 95422818 Number of successful extensions: 317145 Number of sequences better than 10.0: 7223 Number of HSP's gapped: 313362 Number of HSP's successfully gapped: 8440 Length of query: 333 Length of database: 3,846,993,858 Length adjustment: 138 Effective length of query: 195 Effective length of database: 2,291,015,844 Effective search space: 446748089580 Effective search space used: 446748089580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 80 (35.4 bits)