BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_2011 (501 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HLZ7|B2HLZ7_MYCMM Tax_Id=216594 (sigA)RecName: Full=RNA pol... 612 e-173 tr|A0PT58|A0PT58_MYCUA Tax_Id=362242 (sigA)RecName: Full=RNA pol... 612 e-173 sp|P0A602|RPOD_MYCTU Tax_Id=1773 (rpoD)RecName: Full=RNA polymer... 605 e-171 sp|P0A603|RPOD_MYCBO Tax_Id=1765 (rpoD)RecName: Full=RNA polymer... 605 e-171 tr|C6DLK4|C6DLK4_MYCTK Tax_Id=478434 RecName: Full=RNA polymeras... 605 e-171 tr|C1AFG2|C1AFG2_MYCBT Tax_Id=561275 (sigA)RecName: Full=RNA pol... 605 e-171 tr|A5U655|A5U655_MYCTA Tax_Id=419947 (sigA)RecName: Full=RNA pol... 605 e-171 tr|A1KM41|A1KM41_MYCBP Tax_Id=410289 (sigA)RecName: Full=RNA pol... 605 e-171 tr|Q60158|Q60158_MYCBO Tax_Id=1765 (rpoV)RecName: Full=RNA polym... 605 e-171 tr|A5WQV6|A5WQV6_MYCTF Tax_Id=336982 RecName: Full=RNA polymeras... 605 e-171 tr|Q59502|Q59502_MYCBO Tax_Id=1765 (rpoV)RecName: Full=RNA polym... 603 e-170 tr|A0QIN4|A0QIN4_MYCA1 Tax_Id=243243 RecName: Full=RNA polymeras... 602 e-170 tr|A2VL47|A2VL47_MYCTU Tax_Id=348776 RecName: Full=RNA polymeras... 602 e-170 tr|A1T7X4|A1T7X4_MYCVP Tax_Id=350058 RecName: Full=RNA polymeras... 600 e-169 tr|Q73W40|Q73W40_MYCPA Tax_Id=1770 (sigA)RecName: Full=RNA polym... 598 e-169 tr|Q59532|Q59532_MYCLE Tax_Id=1769 (rpoT)RecName: Full=RNA polym... 598 e-169 tr|B8ZQV8|B8ZQV8_MYCLB Tax_Id=561304 (rpoT)RecName: Full=RNA pol... 598 e-169 tr|Q9S5K3|Q9S5K3_MYCLE Tax_Id=1769 (rpoT)RecName: Full=RNA polym... 598 e-169 tr|B1MCW6|B1MCW6_MYCA9 Tax_Id=561007 RecName: Full=RNA polymeras... 593 e-167 tr|Q0S1J1|Q0S1J1_RHOSR Tax_Id=101510 (sigA)RecName: Full=RNA pol... 593 e-167 tr|C1B466|C1B466_RHOOB Tax_Id=632772 (sigA)RecName: Full=RNA pol... 593 e-167 tr|C6L2K0|C6L2K0_RHOOP Tax_Id=37919 (sigA)RecName: Full=RNA poly... 593 e-167 tr|Q1B9Z1|Q1B9Z1_MYCSS Tax_Id=164756 RecName: Full=RNA polymeras... 592 e-167 tr|A3PYI3|A3PYI3_MYCSJ Tax_Id=164757 RecName: Full=RNA polymeras... 592 e-167 tr|A1UF21|A1UF21_MYCSK Tax_Id=189918 RecName: Full=RNA polymeras... 592 e-167 tr|C0ZYT9|C0ZYT9_RHOE4 Tax_Id=234621 (sigA)RecName: Full=RNA pol... 591 e-167 tr|C3JLL5|C3JLL5_RHOER Tax_Id=596309 RecName: Full=RNA polymeras... 591 e-167 tr|A0QW02|A0QW02_MYCS2 Tax_Id=246196 RecName: Full=RNA polymeras... 589 e-166 tr|Q59552|Q59552_MYCSM Tax_Id=1772 (mysA)RecName: Full=RNA polym... 589 e-166 tr|A4TCR0|A4TCR0_MYCGI Tax_Id=350054 RecName: Full=RNA polymeras... 587 e-165 tr|Q8VM92|Q8VM92_RHOFA Tax_Id=1828 (rofA)RecName: Full=RNA polym... 575 e-162 tr|Q5YT84|Q5YT84_NOCFA Tax_Id=37329 (sigA)RecName: Full=RNA poly... 568 e-160 tr|C2APF0|C2APF0_TSUPA Tax_Id=521096 RecName: Full=RNA polymeras... 563 e-158 tr|D0LBS9|D0LBS9_GORB4 Tax_Id=526226 SubName: Full=RNA polymeras... 553 e-155 tr|C6WAJ3|C6WAJ3_ACTMD Tax_Id=446462 RecName: Full=RNA polymeras... 551 e-155 tr|A4FAP1|A4FAP1_SACEN Tax_Id=405948 (sigA)RecName: Full=RNA pol... 546 e-153 tr|C7MYK8|C7MYK8_SACVD Tax_Id=471857 RecName: Full=RNA polymeras... 540 e-151 tr|C0U2T9|C0U2T9_9ACTO Tax_Id=526225 RecName: Full=RNA polymeras... 537 e-150 tr|A4X4Z1|A4X4Z1_SALTO Tax_Id=369723 RecName: Full=RNA polymeras... 536 e-150 tr|C8XG60|C8XG60_NAKMY Tax_Id=479431 SubName: Full=RNA polymeras... 535 e-150 tr|A8M805|A8M805_SALAI Tax_Id=391037 RecName: Full=RNA polymeras... 533 e-149 tr|Q4JVA6|Q4JVA6_CORJK Tax_Id=306537 (sigA)RecName: Full=RNA pol... 530 e-148 tr|C8RTJ4|C8RTJ4_CORJE Tax_Id=525262 (sigA)SubName: Full=RNA pol... 530 e-148 tr|C4RDI4|C4RDI4_9ACTO Tax_Id=219305 RecName: Full=RNA polymeras... 530 e-148 tr|C4DE52|C4DE52_9ACTO Tax_Id=446470 RecName: Full=RNA polymeras... 527 e-147 tr|Q9AGV7|Q9AGV7_CORAM Tax_Id=1697 (rpoD)RecName: Full=RNA polym... 523 e-146 tr|Q9ANT7|Q9ANT7_9CORY Tax_Id=92706 (sigA)RecName: Full=RNA poly... 523 e-146 tr|Q8NPA3|Q8NPA3_CORGL Tax_Id=1718 RecName: Full=RNA polymerase ... 522 e-146 tr|Q6M4B0|Q6M4B0_CORGL Tax_Id=1718 (sigA)RecName: Full=RNA polym... 522 e-146 tr|C2BP75|C2BP75_9CORY Tax_Id=525264 RecName: Full=RNA polymeras... 520 e-145 >tr|B2HLZ7|B2HLZ7_MYCMM Tax_Id=216594 (sigA)RecName: Full=RNA polymerase sigma factor;[Mycobacterium marinum] Length = 501 Score = 612 bits (1577), Expect = e-173 Identities = 317/343 (92%), Positives = 317/343 (92%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 218 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 219 EVELAKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ Sbjct: 399 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 Score = 98.6 bits (244), Expect = 2e-18 Identities = 53/81 (65%), Positives = 54/81 (66%) Query: 1 VAATKASPETGEPVKRTATKSPAKAGAKRPTXXXXXXXXXXXXXXXXXXXXXXXXXXXPK 60 +AATKASPETGEPVKRTATKSPAKAGAKRPT PK Sbjct: 1 MAATKASPETGEPVKRTATKSPAKAGAKRPTKTANGAAPAKRAAKTTGQADDATTGDAPK 60 Query: 61 KTRPSARGTKAARGTKAPGEG 81 KTRPSARGTKAARGTKAPGEG Sbjct: 61 KTRPSARGTKAARGTKAPGEG 81 >tr|A0PT58|A0PT58_MYCUA Tax_Id=362242 (sigA)RecName: Full=RNA polymerase sigma factor;[Mycobacterium ulcerans] Length = 501 Score = 612 bits (1577), Expect = e-173 Identities = 317/343 (92%), Positives = 317/343 (92%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 218 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 219 EVELAKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ Sbjct: 399 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 Score = 98.6 bits (244), Expect = 2e-18 Identities = 53/81 (65%), Positives = 54/81 (66%) Query: 1 VAATKASPETGEPVKRTATKSPAKAGAKRPTXXXXXXXXXXXXXXXXXXXXXXXXXXXPK 60 +AATKASPETGEPVKRTATKSPAKAGAKRPT PK Sbjct: 1 MAATKASPETGEPVKRTATKSPAKAGAKRPTKTANGAPPAKRAAKTPGQADDATTGDAPK 60 Query: 61 KTRPSARGTKAARGTKAPGEG 81 KTRPSARGTKAARGTKAPGEG Sbjct: 61 KTRPSARGTKAARGTKAPGEG 81 >sp|P0A602|RPOD_MYCTU Tax_Id=1773 (rpoD)RecName: Full=RNA polymerase sigma factor rpoD; Short=Sigma-A;[Mycobacterium tuberculosis] Length = 528 Score = 605 bits (1559), Expect = e-171 Identities = 312/343 (90%), Positives = 316/343 (92%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EEIAEP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 186 DEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 245 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLM EL++RGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 246 EVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 305 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 306 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 365 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 366 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 425 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ Sbjct: 426 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 485 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 486 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 Score = 42.0 bits (97), Expect = 0.19 Identities = 24/35 (68%), Positives = 25/35 (71%), Gaps = 6/35 (17%) Query: 1 VAATKASPETGEPVKRTATKSP------AKAGAKR 29 +AATKAS T EPVKRTATKSP AK GAKR Sbjct: 1 MAATKASTATDEPVKRTATKSPAASASGAKTGAKR 35 >sp|P0A603|RPOD_MYCBO Tax_Id=1765 (rpoD)RecName: Full=RNA polymerase sigma factor rpoD; Short=Sigma-A;[Mycobacterium bovis] Length = 528 Score = 605 bits (1559), Expect = e-171 Identities = 312/343 (90%), Positives = 316/343 (92%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EEIAEP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 186 DEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 245 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLM EL++RGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 246 EVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 305 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 306 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 365 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 366 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 425 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ Sbjct: 426 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 485 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 486 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 Score = 42.0 bits (97), Expect = 0.19 Identities = 24/35 (68%), Positives = 25/35 (71%), Gaps = 6/35 (17%) Query: 1 VAATKASPETGEPVKRTATKSP------AKAGAKR 29 +AATKAS T EPVKRTATKSP AK GAKR Sbjct: 1 MAATKASTATDEPVKRTATKSPAASASGAKTGAKR 35 >tr|C6DLK4|C6DLK4_MYCTK Tax_Id=478434 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 528 Score = 605 bits (1559), Expect = e-171 Identities = 312/343 (90%), Positives = 316/343 (92%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EEIAEP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 186 DEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 245 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLM EL++RGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 246 EVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 305 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 306 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 365 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 366 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 425 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ Sbjct: 426 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 485 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 486 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 Score = 42.0 bits (97), Expect = 0.19 Identities = 24/35 (68%), Positives = 25/35 (71%), Gaps = 6/35 (17%) Query: 1 VAATKASPETGEPVKRTATKSP------AKAGAKR 29 +AATKAS T EPVKRTATKSP AK GAKR Sbjct: 1 MAATKASTATDEPVKRTATKSPAASASGAKTGAKR 35 >tr|C1AFG2|C1AFG2_MYCBT Tax_Id=561275 (sigA)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 528 Score = 605 bits (1559), Expect = e-171 Identities = 312/343 (90%), Positives = 316/343 (92%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EEIAEP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 186 DEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 245 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLM EL++RGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 246 EVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 305 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 306 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 365 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 366 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 425 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ Sbjct: 426 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 485 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 486 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 Score = 42.0 bits (97), Expect = 0.19 Identities = 24/35 (68%), Positives = 25/35 (71%), Gaps = 6/35 (17%) Query: 1 VAATKASPETGEPVKRTATKSP------AKAGAKR 29 +AATKAS T EPVKRTATKSP AK GAKR Sbjct: 1 MAATKASTATDEPVKRTATKSPAASASGAKTGAKR 35 >tr|A5U655|A5U655_MYCTA Tax_Id=419947 (sigA)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 528 Score = 605 bits (1559), Expect = e-171 Identities = 312/343 (90%), Positives = 316/343 (92%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EEIAEP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 186 DEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 245 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLM EL++RGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 246 EVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 305 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 306 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 365 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 366 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 425 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ Sbjct: 426 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 485 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 486 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 Score = 42.0 bits (97), Expect = 0.19 Identities = 24/35 (68%), Positives = 25/35 (71%), Gaps = 6/35 (17%) Query: 1 VAATKASPETGEPVKRTATKSP------AKAGAKR 29 +AATKAS T EPVKRTATKSP AK GAKR Sbjct: 1 MAATKASTATDEPVKRTATKSPAASASGAKTGAKR 35 >tr|A1KM41|A1KM41_MYCBP Tax_Id=410289 (sigA)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 528 Score = 605 bits (1559), Expect = e-171 Identities = 312/343 (90%), Positives = 316/343 (92%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EEIAEP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 186 DEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 245 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLM EL++RGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 246 EVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 305 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 306 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 365 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 366 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 425 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ Sbjct: 426 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 485 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 486 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 Score = 42.0 bits (97), Expect = 0.19 Identities = 24/35 (68%), Positives = 25/35 (71%), Gaps = 6/35 (17%) Query: 1 VAATKASPETGEPVKRTATKSP------AKAGAKR 29 +AATKAS T EPVKRTATKSP AK GAKR Sbjct: 1 MAATKASTATDEPVKRTATKSPAASASGAKTGAKR 35 >tr|Q60158|Q60158_MYCBO Tax_Id=1765 (rpoV)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 528 Score = 605 bits (1559), Expect = e-171 Identities = 312/343 (90%), Positives = 316/343 (92%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EEIAEP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 186 DEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 245 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLM EL++RGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 246 EVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 305 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 306 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 365 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 366 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 425 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ Sbjct: 426 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 485 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 486 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 Score = 40.0 bits (92), Expect = 0.71 Identities = 23/35 (65%), Positives = 24/35 (68%), Gaps = 6/35 (17%) Query: 1 VAATKASPETGEPVKRTATKSP------AKAGAKR 29 +AATKAS T EPVKRTATKSP AK G KR Sbjct: 1 MAATKASTATDEPVKRTATKSPAASASGAKTGPKR 35 >tr|A5WQV6|A5WQV6_MYCTF Tax_Id=336982 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 528 Score = 605 bits (1559), Expect = e-171 Identities = 312/343 (90%), Positives = 316/343 (92%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EEIAEP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 186 DEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 245 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLM EL++RGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 246 EVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 305 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 306 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 365 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 366 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 425 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ Sbjct: 426 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 485 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 486 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 Score = 42.0 bits (97), Expect = 0.19 Identities = 24/35 (68%), Positives = 25/35 (71%), Gaps = 6/35 (17%) Query: 1 VAATKASPETGEPVKRTATKSP------AKAGAKR 29 +AATKAS T EPVKRTATKSP AK GAKR Sbjct: 1 MAATKASTATDEPVKRTATKSPAASASGAKTGAKR 35 >tr|Q59502|Q59502_MYCBO Tax_Id=1765 (rpoV)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 528 Score = 603 bits (1554), Expect = e-170 Identities = 311/343 (90%), Positives = 315/343 (91%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EEIAEP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 186 DEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 245 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLM EL++RGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 246 EVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 305 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 306 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 365 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 366 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 425 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ Sbjct: 426 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 485 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKL HPSRSQVLRDYLD Sbjct: 486 PRTLDEIGQVYGVTRERIRQIESKTMSKLHHPSRSQVLRDYLD 528 Score = 42.0 bits (97), Expect = 0.19 Identities = 24/35 (68%), Positives = 25/35 (71%), Gaps = 6/35 (17%) Query: 1 VAATKASPETGEPVKRTATKSP------AKAGAKR 29 +AATKAS T EPVKRTATKSP AK GAKR Sbjct: 1 MAATKASTATDEPVKRTATKSPAASASGAKTGAKR 35 >tr|A0QIN4|A0QIN4_MYCA1 Tax_Id=243243 RecName: Full=RNA polymerase sigma factor;[Mycobacterium avium] Length = 496 Score = 602 bits (1553), Expect = e-170 Identities = 310/343 (90%), Positives = 316/343 (92%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 ++EIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 154 DDEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 213 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLM+E+ +RGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 214 EVELAKRIEAGLYATQLMSEMAERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 273 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 274 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 333 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 334 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 393 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 394 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 453 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 454 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 496 >tr|A2VL47|A2VL47_MYCTU Tax_Id=348776 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis C] Length = 528 Score = 602 bits (1551), Expect = e-170 Identities = 311/343 (90%), Positives = 315/343 (91%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EEIAEP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 186 DEEIAEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 245 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLM EL++RGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 246 EVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 305 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNL LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 306 LAKRYTGRGMAFLDLIQEGNLRLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 365 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 366 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 425 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ Sbjct: 426 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 485 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 486 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 528 Score = 42.0 bits (97), Expect = 0.19 Identities = 24/35 (68%), Positives = 25/35 (71%), Gaps = 6/35 (17%) Query: 1 VAATKASPETGEPVKRTATKSP------AKAGAKR 29 +AATKAS T EPVKRTATKSP AK GAKR Sbjct: 1 MAATKASTATDEPVKRTATKSPAASASGAKTGAKR 35 >tr|A1T7X4|A1T7X4_MYCVP Tax_Id=350058 RecName: Full=RNA polymerase sigma factor;[Mycobacterium vanbaalenii] Length = 478 Score = 600 bits (1547), Expect = e-169 Identities = 309/343 (90%), Positives = 315/343 (91%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 ++ +AEPSEKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 136 DDGVAEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 195 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLMAEL D+GEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 196 EVELAKRIEAGLYATQLMAELADKGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 255 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 256 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 315 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 316 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 375 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 376 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 435 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 436 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 478 Score = 40.8 bits (94), Expect = 0.42 Identities = 22/30 (73%), Positives = 25/30 (83%), Gaps = 1/30 (3%) Query: 1 VAATKASPETGEPVKRTATKSPA-KAGAKR 29 +AATKASP T EPVKRTA K+PA KA AK+ Sbjct: 1 MAATKASPATEEPVKRTAAKAPAKKAPAKK 30 >tr|Q73W40|Q73W40_MYCPA Tax_Id=1770 (sigA)RecName: Full=RNA polymerase sigma factor;[Mycobacterium paratuberculosis] Length = 509 Score = 598 bits (1543), Expect = e-169 Identities = 308/343 (89%), Positives = 315/343 (91%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 ++EIAEPSEKDKASGDFVWDEDESEALRQAR+DAELTASADSVRAYLKQIGK Sbjct: 167 DDEIAEPSEKDKASGDFVWDEDESEALRQARRDAELTASADSVRAYLKQIGKVALLNAEE 226 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLM+E+ +RGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 227 EVELAKRIEAGLYATQLMSEMAERGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 286 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 287 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 346 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQD GREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 347 IRIPVHMVEVINKLGRIQRELLQDPGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 406 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 407 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 466 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 467 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 509 Score = 45.4 bits (106), Expect = 0.017 Identities = 36/90 (40%), Positives = 39/90 (43%), Gaps = 13/90 (14%) Query: 1 VAATKASPETGEPVKRTATKSP---AKAGAKRPTXXXXXXXXXXXXXXXXXXXXXXXXXX 57 +AATKASP T PVKRTATKSP AK A + Sbjct: 1 MAATKASPATDGPVKRTATKSPSSPAKRPAAKAANGSAPAKRATKTASRSAKSEAGAAAE 60 Query: 58 XPKKTR----------PSARGTKAARGTKA 77 KKTR PSARGTKAA+G A Sbjct: 61 PAKKTRSSAKGADAKAPSARGTKAAKGGPA 90 >tr|Q59532|Q59532_MYCLE Tax_Id=1769 (rpoT)RecName: Full=RNA polymerase sigma factor;[Mycobacterium leprae] Length = 574 Score = 598 bits (1541), Expect = e-169 Identities = 308/343 (89%), Positives = 313/343 (91%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EEI EP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 232 DEEIVEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 291 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLM EL++RG KLP AQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 292 EVELAKRIEAGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVS 351 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 352 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 411 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 412 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 471 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 472 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 531 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 532 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 Score = 42.0 bits (97), Expect = 0.19 Identities = 22/31 (70%), Positives = 24/31 (77%), Gaps = 1/31 (3%) Query: 1 VAATKASPETGEPVKRTATKSPAKAGAKRPT 31 V ATK SP TG+PVKRTATK+PA AKR T Sbjct: 56 VVATKTSPATGQPVKRTATKTPA-TPAKRST 85 >tr|B8ZQV8|B8ZQV8_MYCLB Tax_Id=561304 (rpoT)RecName: Full=RNA polymerase sigma factor;[Mycobacterium leprae] Length = 574 Score = 598 bits (1541), Expect = e-169 Identities = 308/343 (89%), Positives = 313/343 (91%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EEI EP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 232 DEEIVEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 291 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLM EL++RG KLP AQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 292 EVELAKRIEAGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVS 351 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 352 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 411 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 412 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 471 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 472 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 531 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 532 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 574 Score = 42.0 bits (97), Expect = 0.19 Identities = 22/31 (70%), Positives = 24/31 (77%), Gaps = 1/31 (3%) Query: 1 VAATKASPETGEPVKRTATKSPAKAGAKRPT 31 V ATK SP TG+PVKRTATK+PA AKR T Sbjct: 56 VVATKTSPATGQPVKRTATKTPA-TPAKRST 85 >tr|Q9S5K3|Q9S5K3_MYCLE Tax_Id=1769 (rpoT)RecName: Full=RNA polymerase sigma factor;[Mycobacterium leprae] Length = 576 Score = 598 bits (1541), Expect = e-169 Identities = 308/343 (89%), Positives = 313/343 (91%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EEI EP+EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 234 DEEIVEPTEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 293 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQLM EL++RG KLP AQRRDMMWICRDGDRAKNHLLEANLRLVVS Sbjct: 294 EVELAKRIEAGLYATQLMTELSERGTKLPTAQRRDMMWICRDGDRAKNHLLEANLRLVVS 353 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 354 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 413 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 414 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 473 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 474 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 533 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 534 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 576 Score = 42.0 bits (97), Expect = 0.19 Identities = 22/31 (70%), Positives = 24/31 (77%), Gaps = 1/31 (3%) Query: 1 VAATKASPETGEPVKRTATKSPAKAGAKRPT 31 V ATK SP TG+PVKRTATK+PA AKR T Sbjct: 56 VVATKTSPATGQPVKRTATKTPA-TPAKRST 85 >tr|B1MCW6|B1MCW6_MYCA9 Tax_Id=561007 RecName: Full=RNA polymerase sigma factor;[Mycobacterium abscessus] Length = 467 Score = 593 bits (1529), Expect = e-167 Identities = 305/338 (90%), Positives = 311/338 (92%) Query: 164 EPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXX 223 EPSEKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 130 EPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELA 189 Query: 224 KRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRY 283 KRIEAGLYATQ++ ELT++GEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRY Sbjct: 190 KRIEAGLYATQIVTELTEKGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRY 249 Query: 284 TGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 343 TGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV Sbjct: 250 TGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 309 Query: 344 HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDE 403 HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDE Sbjct: 310 HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDE 369 Query: 404 GDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLD 463 GDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLD Sbjct: 370 GDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLD 429 Query: 464 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 430 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 467 >tr|Q0S1J1|Q0S1J1_RHOSR Tax_Id=101510 (sigA)RecName: Full=RNA polymerase sigma factor;[Rhodococcus sp.] Length = 457 Score = 593 bits (1528), Expect = e-167 Identities = 306/343 (89%), Positives = 312/343 (90%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EE EPSEKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 115 DEETEEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 174 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQ+M EL+D GEKLPAAQRRDM WICRDG+RAKNHLLEANLRLVVS Sbjct: 175 EVELAKRIEAGLYATQIMQELSDSGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVS 234 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 235 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 294 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 295 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 354 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 355 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 414 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 415 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 457 >tr|C1B466|C1B466_RHOOB Tax_Id=632772 (sigA)RecName: Full=RNA polymerase sigma factor;[Rhodococcus opacus] Length = 457 Score = 593 bits (1528), Expect = e-167 Identities = 306/343 (89%), Positives = 312/343 (90%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EE EPSEKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 115 DEETEEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 174 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQ+M EL+D GEKLPAAQRRDM WICRDG+RAKNHLLEANLRLVVS Sbjct: 175 EVELAKRIEAGLYATQIMQELSDSGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVS 234 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 235 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 294 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 295 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 354 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 355 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 414 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 415 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 457 >tr|C6L2K0|C6L2K0_RHOOP Tax_Id=37919 (sigA)RecName: Full=RNA polymerase sigma factor;[Rhodococcus opacus] Length = 457 Score = 593 bits (1528), Expect = e-167 Identities = 306/343 (89%), Positives = 312/343 (90%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EE EPSEKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 115 DEETEEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 174 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQ+M EL+D GEKLPAAQRRDM WICRDG+RAKNHLLEANLRLVVS Sbjct: 175 EVELAKRIEAGLYATQIMQELSDSGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVS 234 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 235 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 294 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 295 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 354 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 355 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 414 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 415 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 457 >tr|Q1B9Z1|Q1B9Z1_MYCSS Tax_Id=164756 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 480 Score = 592 bits (1527), Expect = e-167 Identities = 305/343 (88%), Positives = 312/343 (90%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EEIAEPSEKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 138 DEEIAEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 197 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGL+ATQ +AEL ++GEKLP QRRDM WICRDGDRAKNHLLEANLRLVVS Sbjct: 198 EVELAKRIEAGLFATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVS 257 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 258 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 317 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 318 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 377 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 378 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 437 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 438 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 480 Score = 43.5 bits (101), Expect = 0.064 Identities = 23/32 (71%), Positives = 26/32 (81%), Gaps = 2/32 (6%) Query: 1 VAATKASPETGEPVKRTATKSPAK--AGAKRP 30 +AATKA+P T EPVKRTATK+PAK A AK P Sbjct: 1 MAATKANPATEEPVKRTATKTPAKKTAAAKAP 32 >tr|A3PYI3|A3PYI3_MYCSJ Tax_Id=164757 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 480 Score = 592 bits (1527), Expect = e-167 Identities = 305/343 (88%), Positives = 312/343 (90%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EEIAEPSEKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 138 DEEIAEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 197 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGL+ATQ +AEL ++GEKLP QRRDM WICRDGDRAKNHLLEANLRLVVS Sbjct: 198 EVELAKRIEAGLFATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVS 257 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 258 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 317 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 318 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 377 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 378 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 437 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 438 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 480 Score = 44.7 bits (104), Expect = 0.029 Identities = 24/32 (75%), Positives = 26/32 (81%), Gaps = 2/32 (6%) Query: 1 VAATKASPETGEPVKRTATKSPAK--AGAKRP 30 +AATKASP T EPVKRTATK+PAK A AK P Sbjct: 1 MAATKASPATEEPVKRTATKTPAKKTAAAKAP 32 >tr|A1UF21|A1UF21_MYCSK Tax_Id=189918 RecName: Full=RNA polymerase sigma factor;[Mycobacterium sp.] Length = 480 Score = 592 bits (1527), Expect = e-167 Identities = 305/343 (88%), Positives = 312/343 (90%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +EEIAEPSEKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 138 DEEIAEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 197 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGL+ATQ +AEL ++GEKLP QRRDM WICRDGDRAKNHLLEANLRLVVS Sbjct: 198 EVELAKRIEAGLFATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVS 257 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 258 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 317 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 318 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 377 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 378 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 437 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 438 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 480 Score = 43.5 bits (101), Expect = 0.064 Identities = 23/32 (71%), Positives = 26/32 (81%), Gaps = 2/32 (6%) Query: 1 VAATKASPETGEPVKRTATKSPAK--AGAKRP 30 +AATKA+P T EPVKRTATK+PAK A AK P Sbjct: 1 MAATKANPATEEPVKRTATKTPAKKTAAAKAP 32 >tr|C0ZYT9|C0ZYT9_RHOE4 Tax_Id=234621 (sigA)RecName: Full=RNA polymerase sigma factor;[Rhodococcus erythropolis] Length = 452 Score = 591 bits (1524), Expect = e-167 Identities = 305/343 (88%), Positives = 311/343 (90%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 EE AEPSEKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 110 EETAAEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 169 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYA Q+M +L D+GEKLPAAQRRDM WICRDG+RAKNHLLEANLRLVVS Sbjct: 170 EVELAKRIEAGLYAVQIMQDLADKGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVS 229 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 230 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 289 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 290 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 349 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 350 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 409 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 410 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 452 >tr|C3JLL5|C3JLL5_RHOER Tax_Id=596309 RecName: Full=RNA polymerase sigma factor;[Rhodococcus erythropolis SK121] Length = 430 Score = 591 bits (1524), Expect = e-167 Identities = 305/343 (88%), Positives = 311/343 (90%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 EE AEPSEKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 88 EETAAEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 147 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYA Q+M +L D+GEKLPAAQRRDM WICRDG+RAKNHLLEANLRLVVS Sbjct: 148 EVELAKRIEAGLYAVQIMQDLADKGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVS 207 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 208 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 267 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 268 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 327 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 328 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 387 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 388 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 430 >tr|A0QW02|A0QW02_MYCS2 Tax_Id=246196 RecName: Full=RNA polymerase sigma factor;[Mycobacterium smegmatis] Length = 466 Score = 589 bits (1519), Expect = e-166 Identities = 303/343 (88%), Positives = 311/343 (90%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +++I EPSEKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 124 DDDIDEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 183 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQ +AEL ++GEKLP QRRDM WICRDGDRAKNHLLEANLRLVVS Sbjct: 184 EVELAKRIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVS 243 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 244 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 303 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 304 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 363 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 364 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 423 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 424 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466 Score = 43.9 bits (102), Expect = 0.049 Identities = 24/30 (80%), Positives = 26/30 (86%), Gaps = 1/30 (3%) Query: 1 VAATKASPETGEPVKRTATKSPA-KAGAKR 29 +AATKASP T EPVKRTATK+PA KA AKR Sbjct: 1 MAATKASPATEEPVKRTATKTPAKKAPAKR 30 >tr|Q59552|Q59552_MYCSM Tax_Id=1772 (mysA)RecName: Full=RNA polymerase sigma factor;[Mycobacterium smegmatis] Length = 466 Score = 589 bits (1519), Expect = e-166 Identities = 303/343 (88%), Positives = 311/343 (90%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 +++I EPSEKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 124 DDDIDEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 183 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYATQ +AEL ++GEKLP QRRDM WICRDGDRAKNHLLEANLRLVVS Sbjct: 184 EVELAKRIEAGLYATQKLAELAEKGEKLPVQQRRDMQWICRDGDRAKNHLLEANLRLVVS 243 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 244 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 303 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 304 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 363 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 364 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 423 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 424 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 466 Score = 43.9 bits (102), Expect = 0.049 Identities = 24/30 (80%), Positives = 26/30 (86%), Gaps = 1/30 (3%) Query: 1 VAATKASPETGEPVKRTATKSPA-KAGAKR 29 +AATKASP T EPVKRTATK+PA KA AKR Sbjct: 1 MAATKASPATEEPVKRTATKTPAKKAPAKR 30 >tr|A4TCR0|A4TCR0_MYCGI Tax_Id=350054 RecName: Full=RNA polymerase sigma factor;[Mycobacterium gilvum] Length = 488 Score = 587 bits (1513), Expect = e-165 Identities = 302/343 (88%), Positives = 309/343 (90%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 ++ + EPSEKDKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 146 DDSLPEPSEKDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 205 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLY TQLMAE ++GEKL AQRRD MWICRDGDRAKNHLLEANLRLVVS Sbjct: 206 EVELAKRIEAGLYCTQLMAEFAEKGEKLTTAQRRDYMWICRDGDRAKNHLLEANLRLVVS 265 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 266 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 325 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 326 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 385 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 386 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 445 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 446 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 488 Score = 40.8 bits (94), Expect = 0.42 Identities = 23/32 (71%), Positives = 25/32 (78%), Gaps = 1/32 (3%) Query: 1 VAATKASPETGEPVKRTATKSPA-KAGAKRPT 31 VAATKAS T EPVKRTA K+PA KA AK+ T Sbjct: 14 VAATKASAATDEPVKRTAAKAPAKKAPAKKAT 45 >tr|Q8VM92|Q8VM92_RHOFA Tax_Id=1828 (rofA)RecName: Full=RNA polymerase sigma factor;[Rhodococcus fascians] Length = 474 Score = 575 bits (1483), Expect = e-162 Identities = 296/343 (86%), Positives = 307/343 (89%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 E+ +EP+ +DKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 132 EDATSEPTAEDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 191 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGL+A + M E ++GEKLP AQRRDM WICRDG+RAKNHLLEANLRLVVS Sbjct: 192 EVELAKRIEAGLFAVEKMRESAEKGEKLPVAQRRDMTWICRDGNRAKNHLLEANLRLVVS 251 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 252 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 311 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 312 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 371 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 372 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 431 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 432 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 474 >tr|Q5YT84|Q5YT84_NOCFA Tax_Id=37329 (sigA)RecName: Full=RNA polymerase sigma factor;[Nocardia farcinica] Length = 454 Score = 568 bits (1464), Expect = e-160 Identities = 296/343 (86%), Positives = 301/343 (87%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 EE EPS DKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 112 EEAEEEPSAADKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 171 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYA + M E + GEKLP A RRD WI RDG+RAKNHLLEANLRLVVS Sbjct: 172 EVELAKRIEAGLYAAEKMREFAESGEKLPVAMRRDYNWIVRDGNRAKNHLLEANLRLVVS 231 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 232 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 291 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 292 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 351 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQ Sbjct: 352 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQ 411 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 412 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 454 >tr|C2APF0|C2APF0_TSUPA Tax_Id=521096 RecName: Full=RNA polymerase sigma factor;[Tsukamurella paurometabola DSM 20162] Length = 483 Score = 563 bits (1452), Expect = e-158 Identities = 294/343 (85%), Positives = 302/343 (88%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 + E EPSE+DKASGDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 141 DAEDDEPSEQDKASGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 200 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGL+A Q++ +RGEK RRDM WI RDG+RAKNHLLEANLRLVVS Sbjct: 201 EVELAKRIEAGLFAEQMINRWVERGEKPAIGIRRDMNWIARDGNRAKNHLLEANLRLVVS 260 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 261 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 320 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 321 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 380 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ Sbjct: 381 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 440 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 441 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 483 >tr|D0LBS9|D0LBS9_GORB4 Tax_Id=526226 SubName: Full=RNA polymerase sigma factor RpoD;[Gordonia bronchialis] Length = 489 Score = 553 bits (1426), Expect = e-155 Identities = 285/338 (84%), Positives = 299/338 (88%) Query: 164 EPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXX 223 E + +K +GDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 152 ETATPEKTAGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELA 211 Query: 224 KRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRY 283 KRIEAGL+AT+ + + + GEK+ AQ+RD+ WI RDG+RAKNHLLEANLRLVVSLAKRY Sbjct: 212 KRIEAGLFATERLRRIMESGEKITTAQKRDLNWISRDGNRAKNHLLEANLRLVVSLAKRY 271 Query: 284 TGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 343 TGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV Sbjct: 272 TGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 331 Query: 344 HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDE 403 HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDE Sbjct: 332 HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDE 391 Query: 404 GDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLD 463 GDSQLGDFI FTLLQDQLQSVL+TLSEREAGVVRLRFGLTDGQPRTLD Sbjct: 392 GDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGLTDGQPRTLD 451 Query: 464 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 452 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 489 >tr|C6WAJ3|C6WAJ3_ACTMD Tax_Id=446462 RecName: Full=RNA polymerase sigma factor;[Actinosynnema mirum] Length = 435 Score = 551 bits (1419), Expect = e-155 Identities = 288/343 (83%), Positives = 293/343 (85%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 EEE AE GDFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 93 EEEPAEEENAKPGEGDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 152 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYA + + D EKL RRD+ WI RDG+RAKNHLLEANLRLVVS Sbjct: 153 EVELAKRIEAGLYAAERLRRAEDESEKLTPQMRRDLRWIVRDGERAKNHLLEANLRLVVS 212 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 213 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 272 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 273 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 332 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL TLSEREAGVVRLRFGLTDGQ Sbjct: 333 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLATLSEREAGVVRLRFGLTDGQ 392 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 393 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 435 >tr|A4FAP1|A4FAP1_SACEN Tax_Id=405948 (sigA)RecName: Full=RNA polymerase sigma factor;[Saccharopolyspora erythraea] Length = 467 Score = 546 bits (1406), Expect = e-153 Identities = 286/343 (83%), Positives = 296/343 (86%), Gaps = 1/343 (0%) Query: 160 EEIAEPSEKD-KASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 EE P ++D KA DFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 125 EEPTVPEDEDGKADSDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 184 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYA + + + + E+L RRD+ WI RDG+RAKNHLLEANLRLVVS Sbjct: 185 EVELAKRIEAGLYAAERLRQAEEAEERLAMQMRRDLRWIVRDGERAKNHLLEANLRLVVS 244 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART Sbjct: 245 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 304 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ Sbjct: 305 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 364 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL TLSEREAGVVRLRFGLTDGQ Sbjct: 365 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLATLSEREAGVVRLRFGLTDGQ 424 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 425 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 467 >tr|C7MYK8|C7MYK8_SACVD Tax_Id=471857 RecName: Full=RNA polymerase sigma factor;[Saccharomonospora viridis] Length = 439 Score = 540 bits (1392), Expect = e-151 Identities = 282/343 (82%), Positives = 292/343 (85%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 E+ E D DFVWDE+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 97 EDTDESDEESDANDPDFVWDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAEE 156 Query: 219 XXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVS 278 KRIEAGLYA + + + GEKL RRD+ WI RDG+RAK+HLLEANLRLVVS Sbjct: 157 EVELAKRIEAGLYAAERLRIAEEEGEKLSTQMRRDLKWIVRDGERAKSHLLEANLRLVVS 216 Query: 279 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQART 338 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG+KFSTYATWWIRQAITRAMADQART Sbjct: 217 LAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQART 276 Query: 339 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQ 398 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDI+PEKVLEIQQYAREPISLDQ Sbjct: 277 IRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPISLDQ 336 Query: 399 TIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQ 458 TIGDEGDSQLGDFI FTLLQDQLQSVL TLSEREAGVVRLRFGLTDGQ Sbjct: 337 TIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGLTDGQ 396 Query: 459 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 397 PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 439 >tr|C0U2T9|C0U2T9_9ACTO Tax_Id=526225 RecName: Full=RNA polymerase sigma factor;[Geodermatophilus obscurus DSM 43160] Length = 429 Score = 537 bits (1384), Expect = e-150 Identities = 280/344 (81%), Positives = 293/344 (85%), Gaps = 1/344 (0%) Query: 159 EEEIAEPSEKDKASGDFVWD-EDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXX 217 + E+A E+ GDF WD E+ESEALRQARKDAELTASADSVRAYLKQIGK Sbjct: 86 DSEVAAAPEEAAEGGDFEWDDEEESEALRQARKDAELTASADSVRAYLKQIGKVALLNAE 145 Query: 218 XXXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVV 277 KRIEAGLY + + + + G+KL RRD+ WI RDG+RAKNHLLEANLRLVV Sbjct: 146 EEVDLAKRIEAGLYGAERLRQAEEEGQKLSPQMRRDLNWIVRDGERAKNHLLEANLRLVV 205 Query: 278 SLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQAR 337 SLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQAR Sbjct: 206 SLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQAR 265 Query: 338 TIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLD 397 TIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP+KVLEIQQYAREPISLD Sbjct: 266 TIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPDKVLEIQQYAREPISLD 325 Query: 398 QTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDG 457 QTIGDEGDSQLGDFI FTL+QDQL SVL TLSEREAGVVRLRFGLTDG Sbjct: 326 QTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLMQDQLTSVLQTLSEREAGVVRLRFGLTDG 385 Query: 458 QPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 QPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 386 QPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 429 >tr|A4X4Z1|A4X4Z1_SALTO Tax_Id=369723 RecName: Full=RNA polymerase sigma factor;[Salinispora tropica] Length = 542 Score = 536 bits (1380), Expect = e-150 Identities = 281/345 (81%), Positives = 293/345 (84%), Gaps = 4/345 (1%) Query: 161 EIAEPSEKDKASG----DFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXX 216 E+ +E D AS DF WD++ESEAL+QAR+DAELTASADSVRAYLKQIGK Sbjct: 198 ELTRAAEADAASSASDNDFEWDDEESEALKQARRDAELTASADSVRAYLKQIGKVPLLNA 257 Query: 217 XXXXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLV 276 KRIEAGLYAT+ + + EK +RDMMWI RDG+RAKNHLLEANLRLV Sbjct: 258 EQEVELAKRIEAGLYATEQLRAAEEGDEKFNRDMQRDMMWISRDGERAKNHLLEANLRLV 317 Query: 277 VSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQA 336 VSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQA Sbjct: 318 VSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQA 377 Query: 337 RTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISL 396 RTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISL Sbjct: 378 RTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISL 437 Query: 397 DQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTD 456 DQTIGDEGDSQLGDFI F+LLQDQLQ VL TLSEREAGVVRLRFGLTD Sbjct: 438 DQTIGDEGDSQLGDFIEDSEAVVAVDAVSFSLLQDQLQQVLQTLSEREAGVVRLRFGLTD 497 Query: 457 GQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 GQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 498 GQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 542 >tr|C8XG60|C8XG60_NAKMY Tax_Id=479431 SubName: Full=RNA polymerase, sigma 70 subunit, RpoD subfamily;[Nakamurella multipartita] Length = 448 Score = 535 bits (1378), Expect = e-150 Identities = 281/346 (81%), Positives = 297/346 (85%), Gaps = 7/346 (2%) Query: 163 AEPSEKDKA------SGDFVWD-EDESEALRQARKDAELTASADSVRAYLKQIGKXXXXX 215 A+P+ KD S +F WD E+ESEAL+QARKDAELTASADSVRAYLKQIGK Sbjct: 103 AKPAGKDATPDKPGESEEFTWDDEEESEALKQARKDAELTASADSVRAYLKQIGKVALLN 162 Query: 216 XXXXXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRL 275 KRIEAGLY+++ M + + GE+LP RRD+ WI RDG+RAKNHLLEANLRL Sbjct: 163 AEEEVDLAKRIEAGLYSSERMRQFEEAGERLPNQMRRDLRWIKRDGERAKNHLLEANLRL 222 Query: 276 VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ 335 VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ Sbjct: 223 VVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQ 282 Query: 336 ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPIS 395 ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITP+KVLEIQQYAREPIS Sbjct: 283 ARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPDKVLEIQQYAREPIS 342 Query: 396 LDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLT 455 LDQTIGDEGDSQLGDFI FTLLQDQLQ+VL TLSEREAGVVRLRFGLT Sbjct: 343 LDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQAVLQTLSEREAGVVRLRFGLT 402 Query: 456 DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL+ Sbjct: 403 DGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLE 448 >tr|A8M805|A8M805_SALAI Tax_Id=391037 RecName: Full=RNA polymerase sigma factor;[Salinispora arenicola] Length = 532 Score = 533 bits (1374), Expect = e-149 Identities = 279/345 (80%), Positives = 294/345 (85%), Gaps = 4/345 (1%) Query: 161 EIAEPSEKDKASG----DFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXX 216 E+ + +E D A+ DF WD++ESEAL+QAR+DAELTASADSVRAYLKQIGK Sbjct: 188 ELTQAAEADAANSATDNDFEWDDEESEALKQARRDAELTASADSVRAYLKQIGKVPLLNA 247 Query: 217 XXXXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLV 276 KRIEAGLYA + + + EKL +RD+MWI RDG+RAKNHLLEANLRLV Sbjct: 248 EQEVELAKRIEAGLYAAERLRATEEGEEKLNRDMQRDLMWISRDGERAKNHLLEANLRLV 307 Query: 277 VSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQA 336 VSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQA Sbjct: 308 VSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQA 367 Query: 337 RTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISL 396 RTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISL Sbjct: 368 RTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISL 427 Query: 397 DQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTD 456 DQTIGDEGDSQLGDFI F+LLQDQLQ VL TLSEREAGVVRLRFGLTD Sbjct: 428 DQTIGDEGDSQLGDFIEDSEAVVAVDAVSFSLLQDQLQQVLQTLSEREAGVVRLRFGLTD 487 Query: 457 GQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 GQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 488 GQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 532 >tr|Q4JVA6|Q4JVA6_CORJK Tax_Id=306537 (sigA)RecName: Full=RNA polymerase sigma factor;[Corynebacterium jeikeium] Length = 544 Score = 530 bits (1366), Expect = e-148 Identities = 279/338 (82%), Positives = 286/338 (84%) Query: 164 EPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXX 223 E E DK G FVWDEDES ALRQARKDAELTASADSVRAYLKQIGK Sbjct: 207 EDEETDKNDGSFVWDEDESAALRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLA 266 Query: 224 KRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRY 283 KRIEAGLYA + E+ + GEKL RRD+ I RDG RAKNHLLEANLRLVVSLAKRY Sbjct: 267 KRIEAGLYAAYRLQEIKESGEKLSPMHRRDLREIDRDGRRAKNHLLEANLRLVVSLAKRY 326 Query: 284 TGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 343 TGRGMAFLDLIQEGNLGLIRAVEKFDY KGYKFSTYATWWIRQAITRAMADQARTIRIPV Sbjct: 327 TGRGMAFLDLIQEGNLGLIRAVEKFDYVKGYKFSTYATWWIRQAITRAMADQARTIRIPV 386 Query: 344 HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDE 403 HMVEVINKLGRIQRELLQDLGREPTPEELA+EMDIT +KVLEIQQYAREPISLDQTIGDE Sbjct: 387 HMVEVINKLGRIQRELLQDLGREPTPEELAREMDITVDKVLEIQQYAREPISLDQTIGDE 446 Query: 404 GDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLD 463 GDSQLGDFI FTLLQDQLQ VL TLSEREAGVV+LRFGLTDG PRTLD Sbjct: 447 GDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLHTLSEREAGVVKLRFGLTDGMPRTLD 506 Query: 464 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 507 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 544 >tr|C8RTJ4|C8RTJ4_CORJE Tax_Id=525262 (sigA)SubName: Full=RNA polymerase principal sigma factor SigA;[Corynebacterium jeikeium ATCC 43734] Length = 552 Score = 530 bits (1366), Expect = e-148 Identities = 279/338 (82%), Positives = 286/338 (84%) Query: 164 EPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXX 223 E E DK G FVWDEDES ALRQARKDAELTASADSVRAYLKQIGK Sbjct: 215 EDEETDKNDGSFVWDEDESAALRQARKDAELTASADSVRAYLKQIGKVALLNAEQEVSLA 274 Query: 224 KRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRY 283 KRIEAGLYA + E+ + GEKL RRD+ I RDG RAKNHLLEANLRLVVSLAKRY Sbjct: 275 KRIEAGLYAAYRLQEIKESGEKLSPMHRRDLREIDRDGRRAKNHLLEANLRLVVSLAKRY 334 Query: 284 TGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 343 TGRGMAFLDLIQEGNLGLIRAVEKFDY KGYKFSTYATWWIRQAITRAMADQARTIRIPV Sbjct: 335 TGRGMAFLDLIQEGNLGLIRAVEKFDYVKGYKFSTYATWWIRQAITRAMADQARTIRIPV 394 Query: 344 HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDE 403 HMVEVINKLGRIQRELLQDLGREPTPEELA+EMDIT +KVLEIQQYAREPISLDQTIGDE Sbjct: 395 HMVEVINKLGRIQRELLQDLGREPTPEELAREMDITVDKVLEIQQYAREPISLDQTIGDE 454 Query: 404 GDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLD 463 GDSQLGDFI FTLLQDQLQ VL TLSEREAGVV+LRFGLTDG PRTLD Sbjct: 455 GDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLHTLSEREAGVVKLRFGLTDGMPRTLD 514 Query: 464 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 515 EIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 552 >tr|C4RDI4|C4RDI4_9ACTO Tax_Id=219305 RecName: Full=RNA polymerase sigma factor;[Micromonospora sp. ATCC 39149] Length = 534 Score = 530 bits (1364), Expect = e-148 Identities = 279/345 (80%), Positives = 292/345 (84%), Gaps = 4/345 (1%) Query: 161 EIAEPSEKDKASG----DFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXX 216 E+A+ + D AS DF WD++ESEAL+QAR+DAELTASADSVRAYLKQIGK Sbjct: 190 ELAQAAAADAASSATDNDFEWDDEESEALKQARRDAELTASADSVRAYLKQIGKVPLLNA 249 Query: 217 XXXXXXXKRIEAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLV 276 KRIEAGLYA + + + EKL RD+ WI RDG+RAKNHLLEANLRLV Sbjct: 250 EQEVELAKRIEAGLYAAERLRAAEEGEEKLVREMVRDLGWISRDGERAKNHLLEANLRLV 309 Query: 277 VSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQA 336 VSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQA Sbjct: 310 VSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQA 369 Query: 337 RTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISL 396 RTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISL Sbjct: 370 RTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISL 429 Query: 397 DQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTD 456 DQTIGDEGDSQLGDFI F+LLQDQLQ VL TLSEREAGVVRLRFGLTD Sbjct: 430 DQTIGDEGDSQLGDFIEDSEAVVAVDAVSFSLLQDQLQQVLQTLSEREAGVVRLRFGLTD 489 Query: 457 GQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 GQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 490 GQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 534 >tr|C4DE52|C4DE52_9ACTO Tax_Id=446470 RecName: Full=RNA polymerase sigma factor;[Stackebrandtia nassauensis DSM 44728] Length = 559 Score = 527 bits (1357), Expect = e-147 Identities = 271/335 (80%), Positives = 288/335 (85%) Query: 167 EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXXXXXXKRI 226 E + S F WD+++SEAL+QARKDAE+TASADSVRAYLKQIGK KRI Sbjct: 225 EDGEGSDGFDWDDEDSEALKQARKDAEMTASADSVRAYLKQIGKVPLLNAAQEVELAKRI 284 Query: 227 EAGLYATQLMAELTDRGEKLPAAQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGR 286 EAGLYA + + +L + GE++P RRD+ W+ RDGDRAKNHLL ANLRLVVSLAKRYTGR Sbjct: 285 EAGLYAVERLRQLKEAGEEIPTQVRRDLEWVTRDGDRAKNHLLAANLRLVVSLAKRYTGR 344 Query: 287 GMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMV 346 GMAFLDLIQEGNLGLIRAVEKFDYTKG+KFSTYATWWIRQAITRAMADQARTIRIPVHMV Sbjct: 345 GMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMV 404 Query: 347 EVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDS 406 EVINKLGRIQRELLQDLGREP PEELAKEMDI+PEKVLEIQQYAREPISLDQTIGDEGDS Sbjct: 405 EVINKLGRIQRELLQDLGREPAPEELAKEMDISPEKVLEIQQYAREPISLDQTIGDEGDS 464 Query: 407 QLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIG 466 QLGDFI F+LLQ QLQ VL TLSEREAGVVRLRFGLTDGQPRTLDEIG Sbjct: 465 QLGDFIEDSEAVVAVDAVSFSLLQGQLQQVLQTLSEREAGVVRLRFGLTDGQPRTLDEIG 524 Query: 467 QVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 QVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 525 QVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 559 >tr|Q9AGV7|Q9AGV7_CORAM Tax_Id=1697 (rpoD)RecName: Full=RNA polymerase sigma factor;[Corynebacterium ammoniagenes] Length = 467 Score = 523 bits (1348), Expect = e-146 Identities = 279/357 (78%), Positives = 292/357 (81%), Gaps = 14/357 (3%) Query: 159 EEEIAEPS--------EKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGK 210 E+E EP E+++ +G VWDEDES LRQARKDA+LTASADSVRAYLKQIGK Sbjct: 111 EDEFGEPDDLEEDEDEEEEEDAGASVWDEDESATLRQARKDAQLTASADSVRAYLKQIGK 170 Query: 211 XXXXXXXXXXXXXKRIEAGLYATQLMAELT------DRGEKLPAAQRRDMMWICRDGDRA 264 +RIEAGLYA + E+ D KL AQ+RD+ WI RDG +A Sbjct: 171 VALLNAEQEVSLAERIEAGLYAQHRLDEMERLIAEGDAAAKLSPAQKRDLRWIARDGRKA 230 Query: 265 KNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWI 324 KNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWI Sbjct: 231 KNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWI 290 Query: 325 RQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVL 384 RQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP+ELAKEMDIT EKVL Sbjct: 291 RQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEEKVL 350 Query: 385 EIQQYAREPISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSERE 444 EIQQYAREPISLDQTIGDEGDSQLGDFI FTLLQDQLQ VL TLSERE Sbjct: 351 EIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLTTLSERE 410 Query: 445 AGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 AGVVRLRFGLTDG PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 411 AGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 467 >tr|Q9ANT7|Q9ANT7_9CORY Tax_Id=92706 (sigA)RecName: Full=RNA polymerase sigma factor;[[Brevibacterium] flavum] Length = 498 Score = 523 bits (1347), Expect = e-146 Identities = 277/348 (79%), Positives = 290/348 (83%), Gaps = 6/348 (1%) Query: 160 EEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXX 219 E + E SE D+ G VWDEDES LRQARKDAELTASADSVRAYLKQIGK Sbjct: 151 EALGEESEDDEEDGSSVWDEDESATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQE 210 Query: 220 XXXXKRIEAGLYATQLMAELT------DRGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 273 KRIEAGLYAT M E+ D+ KL A RRD+ I RDG +AKNHLLEANL Sbjct: 211 VSLAKRIEAGLYATHRMEEMEEAFAAGDKDAKLTPAVRRDLRAIARDGRKAKNHLLEANL 270 Query: 274 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 333 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY+KGYKFSTYATWWIRQAITRAMA Sbjct: 271 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMA 330 Query: 334 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 393 DQARTIRIPVHMVEVINKLGRIQRELLQ+LGREPTP+EL+KEMDI+ EKVLEIQQYAREP Sbjct: 331 DQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISEEKVLEIQQYAREP 390 Query: 394 ISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFG 453 ISLDQTIGDEGDSQLGDFI FTLLQDQLQ VL+TLSEREAGVV+LRFG Sbjct: 391 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLETLSEREAGVVKLRFG 450 Query: 454 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 LTDG PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 451 LTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 498 >tr|Q8NPA3|Q8NPA3_CORGL Tax_Id=1718 RecName: Full=RNA polymerase sigma factor;[Corynebacterium glutamicum] Length = 498 Score = 522 bits (1344), Expect = e-146 Identities = 276/348 (79%), Positives = 290/348 (83%), Gaps = 6/348 (1%) Query: 160 EEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXX 219 E + E SE D+ G VWDEDES LRQARKDAELTASADSVRAYLKQIGK Sbjct: 151 EALGEESEDDEEDGSSVWDEDESATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQE 210 Query: 220 XXXXKRIEAGLYATQLMAELT------DRGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 273 KRIEAGLYAT M E+ D+ KL A +RD+ I RDG +AKNHLLEANL Sbjct: 211 VSLAKRIEAGLYATHRMEEMEEAFAAGDKDAKLTPAVKRDLRAIARDGRKAKNHLLEANL 270 Query: 274 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 333 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY+KGYKFSTYATWWIRQAITRAMA Sbjct: 271 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMA 330 Query: 334 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 393 DQARTIRIPVHMVEVINKLGRIQRELLQ+LGREPTP+EL+KEMDI+ EKVLEIQQYAREP Sbjct: 331 DQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISEEKVLEIQQYAREP 390 Query: 394 ISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFG 453 ISLDQTIGDEGDSQLGDFI FTLLQDQLQ VL+TLSEREAGVV+LRFG Sbjct: 391 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLETLSEREAGVVKLRFG 450 Query: 454 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 LTDG PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 451 LTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 498 >tr|Q6M4B0|Q6M4B0_CORGL Tax_Id=1718 (sigA)RecName: Full=RNA polymerase sigma factor;[Corynebacterium glutamicum] Length = 494 Score = 522 bits (1344), Expect = e-146 Identities = 276/348 (79%), Positives = 290/348 (83%), Gaps = 6/348 (1%) Query: 160 EEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXXX 219 E + E SE D+ G VWDEDES LRQARKDAELTASADSVRAYLKQIGK Sbjct: 147 EALGEESEDDEEDGSSVWDEDESATLRQARKDAELTASADSVRAYLKQIGKVALLNAEQE 206 Query: 220 XXXXKRIEAGLYATQLMAELT------DRGEKLPAAQRRDMMWICRDGDRAKNHLLEANL 273 KRIEAGLYAT M E+ D+ KL A +RD+ I RDG +AKNHLLEANL Sbjct: 207 VSLAKRIEAGLYATHRMEEMEEAFAAGDKDAKLTPAVKRDLRAIARDGRKAKNHLLEANL 266 Query: 274 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMA 333 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY+KGYKFSTYATWWIRQAITRAMA Sbjct: 267 RLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMA 326 Query: 334 DQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREP 393 DQARTIRIPVHMVEVINKLGRIQRELLQ+LGREPTP+EL+KEMDI+ EKVLEIQQYAREP Sbjct: 327 DQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISEEKVLEIQQYAREP 386 Query: 394 ISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRFG 453 ISLDQTIGDEGDSQLGDFI FTLLQDQLQ VL+TLSEREAGVV+LRFG Sbjct: 387 ISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLETLSEREAGVVKLRFG 446 Query: 454 LTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 LTDG PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 447 LTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 494 >tr|C2BP75|C2BP75_9CORY Tax_Id=525264 RecName: Full=RNA polymerase sigma factor;[Corynebacterium pseudogenitalium ATCC 33035] Length = 490 Score = 520 bits (1340), Expect = e-145 Identities = 275/349 (78%), Positives = 290/349 (83%), Gaps = 6/349 (1%) Query: 159 EEEIAEPSEKDKASGDFVWDEDESEALRQARKDAELTASADSVRAYLKQIGKXXXXXXXX 218 EE++ + E+++ VWDE+ES ALRQARKDA+LTASADSVRAYLKQIGK Sbjct: 142 EEDLDDDDEEEEEDSSSVWDEEESAALRQARKDAQLTASADSVRAYLKQIGKVALLNAEQ 201 Query: 219 XXXXXKRIEAGLYATQLMAELT------DRGEKLPAAQRRDMMWICRDGDRAKNHLLEAN 272 KRIEAGLYA M E+ D+ KL ++RD+ I RDG +AKNHLLEAN Sbjct: 202 EVSLAKRIEAGLYAQHRMDEMEKARAEGDKAAKLSPMEKRDLRSIARDGRKAKNHLLEAN 261 Query: 273 LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 332 LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM Sbjct: 262 LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM 321 Query: 333 ADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYARE 392 ADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTP+ELAKEMDIT EKVLEIQQYARE Sbjct: 322 ADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEEKVLEIQQYARE 381 Query: 393 PISLDQTIGDEGDSQLGDFIXXXXXXXXXXXXXFTLLQDQLQSVLDTLSEREAGVVRLRF 452 PISLDQTIGDEGDSQLGDFI FTLLQDQLQ VL TLSEREAGVVRLRF Sbjct: 382 PISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLTTLSEREAGVVRLRF 441 Query: 453 GLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 501 GLTDG PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD Sbjct: 442 GLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD 490 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.315 0.132 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 2,526,163,347 Number of extensions: 84840192 Number of successful extensions: 276724 Number of sequences better than 10.0: 7034 Number of HSP's gapped: 269817 Number of HSP's successfully gapped: 7705 Length of query: 501 Length of database: 3,846,993,858 Length adjustment: 142 Effective length of query: 359 Effective length of database: 2,245,915,032 Effective search space: 806283496488 Effective search space used: 806283496488 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 83 (36.6 bits)