BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_2203 (110 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HP48|B2HP48_MYCMM Tax_Id=216594 (rpoZ)SubName: Full=DNA-dir... 219 1e-55 tr|A0PPJ6|A0PPJ6_MYCUA Tax_Id=362242 (rpoZ)SubName: Full=DNA-dir... 218 1e-55 sp|P66721|RPOZ_MYCTU Tax_Id=1773 (rpoZ)RecName: Full=DNA-directe... 203 4e-51 sp|A5U292|RPOZ_MYCTA Tax_Id=419947 (rpoZ)RecName: Full=DNA-direc... 203 4e-51 sp|C1AN35|RPOZ_MYCBT Tax_Id=561275 (rpoZ)RecName: Full=DNA-direc... 203 4e-51 sp|A1KIH9|RPOZ_MYCBP Tax_Id=410289 (rpoZ)RecName: Full=DNA-direc... 203 4e-51 sp|P66722|RPOZ_MYCBO Tax_Id=1765 (rpoZ)RecName: Full=DNA-directe... 203 4e-51 tr|C6DTJ4|C6DTJ4_MYCTK Tax_Id=478434 SubName: Full=DNA-directed ... 203 4e-51 tr|A5WM73|A5WM73_MYCTF Tax_Id=336982 SubName: Full=DNA-directed ... 203 4e-51 tr|A4KGV1|A4KGV1_MYCTU Tax_Id=395095 SubName: Full=DNA-directed ... 203 4e-51 tr|A2VHS5|A2VHS5_MYCTU Tax_Id=348776 SubName: Full=DNA-directed ... 203 4e-51 sp|Q9CCQ6|RPOZ_MYCLE Tax_Id=1769 (rpoZ)RecName: Full=DNA-directe... 203 6e-51 sp|B8ZUM0|RPOZ_MYCLB Tax_Id=561304 (rpoZ)RecName: Full=DNA-direc... 203 6e-51 sp|Q741G7|RPOZ_MYCPA Tax_Id=1770 (rpoZ)RecName: Full=DNA-directe... 192 8e-48 sp|A0QI28|RPOZ_MYCA1 Tax_Id=243243 (rpoZ)RecName: Full=DNA-direc... 192 1e-47 tr|Q1B9F5|Q1B9F5_MYCSS Tax_Id=164756 SubName: Full=DNA-directed ... 174 3e-42 tr|A3PZ69|A3PZ69_MYCSJ Tax_Id=164757 SubName: Full=DNA-directed ... 174 3e-42 tr|A1UFK8|A1UFK8_MYCSK Tax_Id=189918 SubName: Full=DNA-directed ... 174 3e-42 sp|A1T8H5|RPOZ_MYCVP Tax_Id=350058 (rpoZ)RecName: Full=DNA-direc... 173 6e-42 tr|A4TBZ2|A4TBZ2_MYCGI Tax_Id=350054 SubName: Full=DNA-directed ... 170 5e-41 sp|A0QWT1|RPOZ_MYCS2 Tax_Id=246196 (rpoZ)RecName: Full=DNA-direc... 169 7e-41 tr|Q4VDJ2|Q4VDJ2_MYCSM Tax_Id=1772 (rpoZ)SubName: Full=DNA-direc... 169 7e-41 sp|C1B4J5|RPOZ_RHOOB Tax_Id=632772 (rpoZ)RecName: Full=DNA-direc... 169 1e-40 sp|Q0S0L6|RPOZ_RHOSR Tax_Id=101510 (rpoZ)RecName: Full=DNA-direc... 167 3e-40 sp|C0ZZD2|RPOZ_RHOE4 Tax_Id=234621 (rpoZ)RecName: Full=DNA-direc... 164 2e-39 tr|C3JSU3|C3JSU3_RHOER Tax_Id=596309 (rpoZ)SubName: Full=DNA-dir... 164 2e-39 tr|D0LCR7|D0LCR7_GORB4 Tax_Id=526226 SubName: Full=DNA-directed ... 162 1e-38 sp|Q5YTM8|RPOZ_NOCFA Tax_Id=37329 (rpoZ)RecName: Full=DNA-direct... 160 6e-38 tr|B1MCD0|B1MCD0_MYCA9 Tax_Id=561007 SubName: Full=DNA-directed ... 157 4e-37 tr|C2ATJ9|C2ATJ9_TSUPA Tax_Id=521096 SubName: Full=DNA-directed ... 154 3e-36 tr|C6W8Y6|C6W8Y6_ACTMD Tax_Id=446462 SubName: Full=DNA-directed ... 142 2e-32 sp|A4FBI2|RPOZ_SACEN Tax_Id=405948 (rpoZ)RecName: Full=DNA-direc... 139 8e-32 tr|C7MSK0|C7MSK0_SACVD Tax_Id=471857 SubName: Full=DNA-directed ... 138 2e-31 sp|B1VDN5|RPOZ_CORU7 Tax_Id=504474 (rpoZ)RecName: Full=DNA-direc... 130 5e-29 sp|Q4JVH5|RPOZ_CORJK Tax_Id=306537 (rpoZ)RecName: Full=DNA-direc... 127 3e-28 tr|C8RTC4|C8RTC4_CORJE Tax_Id=525262 SubName: Full=DNA-directed ... 127 3e-28 sp|P60333|RPOZ_CORDI Tax_Id=1717 (rpoZ)RecName: Full=DNA-directe... 125 2e-27 tr|C8XII5|C8XII5_NAKMY Tax_Id=479431 SubName: Full=DNA-directed ... 125 2e-27 tr|C0UA72|C0UA72_9ACTO Tax_Id=526225 SubName: Full=DNA-directed ... 122 1e-26 tr|C0WL27|C0WL27_9CORY Tax_Id=525260 (rpoZ)SubName: Full=DNA-dir... 121 3e-26 tr|C6RA23|C6RA23_9CORY Tax_Id=553206 (rpoZ)SubName: Full=DNA-dir... 120 4e-26 tr|C2BPF6|C2BPF6_9CORY Tax_Id=525264 (rpoZ)SubName: Full=DNA-dir... 120 4e-26 tr|C2CMP9|C2CMP9_CORST Tax_Id=525268 (rpoZ)SubName: Full=DNA-dir... 119 8e-26 tr|C4RHQ5|C4RHQ5_9ACTO Tax_Id=219305 SubName: Full=DNA-directed ... 119 1e-25 tr|C8NU99|C8NU99_9CORY Tax_Id=585529 SubName: Full=DNA-directed ... 119 1e-25 tr|C0XSU8|C0XSU8_9CORY Tax_Id=525263 (rpoZ)SubName: Full=DNA-dir... 119 1e-25 sp|Q8NQ43|RPOZ_CORGL Tax_Id=1718 (rpoZ)RecName: Full=DNA-directe... 118 2e-25 sp|Q8FT46|RPOZ_COREF Tax_Id=152794 (rpoZ)RecName: Full=DNA-direc... 118 2e-25 tr|A4QEI0|A4QEI0_CORGB Tax_Id=340322 SubName: Full=Putative unch... 118 2e-25 tr|C8NP34|C8NP34_COREF Tax_Id=196164 SubName: Full=DNA-directed ... 118 2e-25 >tr|B2HP48|B2HP48_MYCMM Tax_Id=216594 (rpoZ)SubName: Full=DNA-directed RNA polymerase (Omega chain) RpoZ;[Mycobacterium marinum] Length = 110 Score = 219 bits (557), Expect = 1e-55 Identities = 109/110 (99%), Positives = 110/110 (100%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 >tr|A0PPJ6|A0PPJ6_MYCUA Tax_Id=362242 (rpoZ)SubName: Full=DNA-directed RNA polymerase (Omega chain) RpoZ;[Mycobacterium ulcerans] Length = 110 Score = 218 bits (556), Expect = 1e-55 Identities = 108/110 (98%), Positives = 110/110 (100%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SIPQSDAPLAAVSAVDQFDPSSGG+GAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSIPQSDAPLAAVSAVDQFDPSSGGIGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 >sp|P66721|RPOZ_MYCTU Tax_Id=1773 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium tuberculosis] Length = 110 Score = 203 bits (517), Expect = 4e-51 Identities = 102/110 (92%), Positives = 104/110 (94%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QSDA LAAV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >sp|A5U292|RPOZ_MYCTA Tax_Id=419947 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium tuberculosis] Length = 110 Score = 203 bits (517), Expect = 4e-51 Identities = 102/110 (92%), Positives = 104/110 (94%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QSDA LAAV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >sp|C1AN35|RPOZ_MYCBT Tax_Id=561275 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium bovis] Length = 110 Score = 203 bits (517), Expect = 4e-51 Identities = 102/110 (92%), Positives = 104/110 (94%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QSDA LAAV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >sp|A1KIH9|RPOZ_MYCBP Tax_Id=410289 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium bovis] Length = 110 Score = 203 bits (517), Expect = 4e-51 Identities = 102/110 (92%), Positives = 104/110 (94%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QSDA LAAV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >sp|P66722|RPOZ_MYCBO Tax_Id=1765 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium bovis] Length = 110 Score = 203 bits (517), Expect = 4e-51 Identities = 102/110 (92%), Positives = 104/110 (94%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QSDA LAAV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >tr|C6DTJ4|C6DTJ4_MYCTK Tax_Id=478434 SubName: Full=DNA-directed RNA polymerase subunit omega rpoZ;[Mycobacterium tuberculosis] Length = 110 Score = 203 bits (517), Expect = 4e-51 Identities = 102/110 (92%), Positives = 104/110 (94%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QSDA LAAV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >tr|A5WM73|A5WM73_MYCTF Tax_Id=336982 SubName: Full=DNA-directed RNA polymerase omega subunit rpoZ;[Mycobacterium tuberculosis] Length = 110 Score = 203 bits (517), Expect = 4e-51 Identities = 102/110 (92%), Positives = 104/110 (94%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QSDA LAAV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >tr|A4KGV1|A4KGV1_MYCTU Tax_Id=395095 SubName: Full=DNA-directed RNA polymerase (Omega chain) rpoZ;[Mycobacterium tuberculosis str. Haarlem] Length = 110 Score = 203 bits (517), Expect = 4e-51 Identities = 102/110 (92%), Positives = 104/110 (94%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QSDA LAAV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >tr|A2VHS5|A2VHS5_MYCTU Tax_Id=348776 SubName: Full=DNA-directed RNA polymerase (Omega chain) rpoZ;[Mycobacterium tuberculosis C] Length = 110 Score = 203 bits (517), Expect = 4e-51 Identities = 102/110 (92%), Positives = 104/110 (94%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SI QSDA LAAV AVDQFDPSSG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSISQSDASLAAVPAVDQFDPSSGASGGYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 110 >sp|Q9CCQ6|RPOZ_MYCLE Tax_Id=1769 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium leprae] Length = 110 Score = 203 bits (516), Expect = 6e-51 Identities = 101/110 (91%), Positives = 105/110 (95%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SIPQS+ L+AV AVDQFDPSSGG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE Sbjct: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 >sp|B8ZUM0|RPOZ_MYCLB Tax_Id=561304 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium leprae] Length = 110 Score = 203 bits (516), Expect = 6e-51 Identities = 101/110 (91%), Positives = 105/110 (95%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +SIPQS+ L+AV AVDQFDPSSGG G YDTPLGITNPPIDELLDRVSSKYALVIYAAKR Sbjct: 1 MSIPQSNTSLSAVIAVDQFDPSSGGQGVYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQIND+YNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE Sbjct: 61 ARQINDHYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 >sp|Q741G7|RPOZ_MYCPA Tax_Id=1770 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium paratuberculosis] Length = 108 Score = 192 bits (489), Expect = 8e-48 Identities = 97/106 (91%), Positives = 101/106 (95%), Gaps = 2/106 (1%) Query: 5 QSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQI 64 QSDA LAAV +D+FDPS+GG GAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQI Sbjct: 5 QSDAALAAV--LDRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQI 62 Query: 65 NDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 NDYYNQLGEGILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE Sbjct: 63 NDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 108 >sp|A0QI28|RPOZ_MYCA1 Tax_Id=243243 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium avium] Length = 108 Score = 192 bits (487), Expect = 1e-47 Identities = 97/106 (91%), Positives = 100/106 (94%), Gaps = 2/106 (1%) Query: 5 QSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQI 64 QSDA LAAV D+FDPS+GG GAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQI Sbjct: 5 QSDAALAAVP--DRFDPSAGGPGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQI 62 Query: 65 NDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 NDYYNQLGEGILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE Sbjct: 63 NDYYNQLGEGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 108 >tr|Q1B9F5|Q1B9F5_MYCSS Tax_Id=164756 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Mycobacterium sp.] Length = 107 Score = 174 bits (441), Expect = 3e-42 Identities = 88/110 (80%), Positives = 94/110 (85%), Gaps = 3/110 (2%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +S P +DA L +AVD + GAYDTPLGITNPPIDELLDR SSKYALVIYAAKR Sbjct: 1 MSTPHADAQL---TAVDDLTIDAAAAGAYDTPLGITNPPIDELLDRASSKYALVIYAAKR 57 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE Sbjct: 58 ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHEDLLEHTEGE 107 >tr|A3PZ69|A3PZ69_MYCSJ Tax_Id=164757 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Mycobacterium sp.] Length = 107 Score = 174 bits (441), Expect = 3e-42 Identities = 88/110 (80%), Positives = 94/110 (85%), Gaps = 3/110 (2%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +S P +DA L +AVD + GAYDTPLGITNPPIDELLDR SSKYALVIYAAKR Sbjct: 1 MSTPHADAQL---TAVDDLTIDAAAAGAYDTPLGITNPPIDELLDRASSKYALVIYAAKR 57 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE Sbjct: 58 ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHEDLLEHTEGE 107 >tr|A1UFK8|A1UFK8_MYCSK Tax_Id=189918 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Mycobacterium sp.] Length = 107 Score = 174 bits (441), Expect = 3e-42 Identities = 88/110 (80%), Positives = 94/110 (85%), Gaps = 3/110 (2%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +S P +DA L +AVD + GAYDTPLGITNPPIDELLDR SSKYALVIYAAKR Sbjct: 1 MSTPHADAQL---TAVDDLTIDAAAAGAYDTPLGITNPPIDELLDRASSKYALVIYAAKR 57 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE Sbjct: 58 ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHEDLLEHTEGE 107 >sp|A1T8H5|RPOZ_MYCVP Tax_Id=350058 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium vanbaalenii] Length = 104 Score = 173 bits (438), Expect = 6e-42 Identities = 90/110 (81%), Positives = 94/110 (85%), Gaps = 6/110 (5%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +S P +D LAAV DPS+ AYDTPLGITNPPIDELLDR SSKYALVIYAAKR Sbjct: 1 MSTPHADTRLAAVD----IDPSAAS--AYDTPLGITNPPIDELLDRASSKYALVIYAAKR 54 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIAMREIH DLLEHTEGE Sbjct: 55 ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIAMREIHGDLLEHTEGE 104 >tr|A4TBZ2|A4TBZ2_MYCGI Tax_Id=350054 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Mycobacterium gilvum] Length = 107 Score = 170 bits (430), Expect = 5e-41 Identities = 88/107 (82%), Positives = 92/107 (85%), Gaps = 6/107 (5%) Query: 4 PQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQ 63 P +D+ LAA DPS+ AYDTPLGITNPPIDELLDR SSKYALVIYAAKRARQ Sbjct: 7 PTADSRLAAAD----IDPSAAS--AYDTPLGITNPPIDELLDRASSKYALVIYAAKRARQ 60 Query: 64 INDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 INDYYNQLG+GILEYVGPLVEPGLQEKPLSIAMREIH DLLEHTEGE Sbjct: 61 INDYYNQLGDGILEYVGPLVEPGLQEKPLSIAMREIHGDLLEHTEGE 107 >sp|A0QWT1|RPOZ_MYCS2 Tax_Id=246196 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Mycobacterium smegmatis] Length = 107 Score = 169 bits (429), Expect = 7e-41 Identities = 86/110 (78%), Positives = 91/110 (82%), Gaps = 3/110 (2%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +S P +DA L +A D S AYDTPLGITNPPIDELL R SSKYALVIYAAKR Sbjct: 1 MSTPHADAQL---NAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE Sbjct: 58 ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107 >tr|Q4VDJ2|Q4VDJ2_MYCSM Tax_Id=1772 (rpoZ)SubName: Full=DNA-directed RNA polymerase omega subunit; EC=2.7.7.6;[Mycobacterium smegmatis] Length = 107 Score = 169 bits (429), Expect = 7e-41 Identities = 86/110 (78%), Positives = 91/110 (82%), Gaps = 3/110 (2%) Query: 1 VSIPQSDAPLAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKR 60 +S P +DA L +A D S AYDTPLGITNPPIDELL R SSKYALVIYAAKR Sbjct: 1 MSTPHADAQL---NAADDLGIDSSAASAYDTPLGITNPPIDELLSRASSKYALVIYAAKR 57 Query: 61 ARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 ARQINDYYNQLG+GILEYVGPLVEPGLQEKPLSIA+REIH DLLEHTEGE Sbjct: 58 ARQINDYYNQLGDGILEYVGPLVEPGLQEKPLSIALREIHGDLLEHTEGE 107 >sp|C1B4J5|RPOZ_RHOOB Tax_Id=632772 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Rhodococcus opacus] Length = 101 Score = 169 bits (427), Expect = 1e-40 Identities = 83/101 (82%), Positives = 90/101 (89%) Query: 10 LAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYN 69 +++ AV PS G + AYDTPLGITNPPIDELL R SSKYALVIYAAKRARQINDYYN Sbjct: 1 MSSTPAVASATPSHGALPAYDTPLGITNPPIDELLARTSSKYALVIYAAKRARQINDYYN 60 Query: 70 QLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 QLG+GILEYVGPLVEPGLQEKPLSIA+REIH+DLLEHTEGE Sbjct: 61 QLGDGILEYVGPLVEPGLQEKPLSIALREIHSDLLEHTEGE 101 >sp|Q0S0L6|RPOZ_RHOSR Tax_Id=101510 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Rhodococcus sp.] Length = 101 Score = 167 bits (423), Expect = 3e-40 Identities = 82/101 (81%), Positives = 89/101 (88%) Query: 10 LAAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYN 69 +++ A PS G + AYDTPLGITNPPIDELL R SSKYALVIYAAKRARQINDYYN Sbjct: 1 MSSTPAAASATPSHGALPAYDTPLGITNPPIDELLARTSSKYALVIYAAKRARQINDYYN 60 Query: 70 QLGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 QLG+GILEYVGPLVEPGLQEKPLSIA+REIH+DLLEHTEGE Sbjct: 61 QLGDGILEYVGPLVEPGLQEKPLSIALREIHSDLLEHTEGE 101 >sp|C0ZZD2|RPOZ_RHOE4 Tax_Id=234621 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Rhodococcus erythropolis] Length = 99 Score = 164 bits (416), Expect = 2e-39 Identities = 83/100 (83%), Positives = 89/100 (89%), Gaps = 5/100 (5%) Query: 11 AAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQ 70 +A SA Q G + AYDTPLGITNPPIDELL+R SSKYALVIY+AKRARQINDYYNQ Sbjct: 5 SAASAAGQ-----GALPAYDTPLGITNPPIDELLERTSSKYALVIYSAKRARQINDYYNQ 59 Query: 71 LGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 LG+GILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 60 LGDGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 99 >tr|C3JSU3|C3JSU3_RHOER Tax_Id=596309 (rpoZ)SubName: Full=DNA-directed RNA polymerase, omega subunit; EC=2.7.7.6;[Rhodococcus erythropolis SK121] Length = 99 Score = 164 bits (416), Expect = 2e-39 Identities = 83/100 (83%), Positives = 89/100 (89%), Gaps = 5/100 (5%) Query: 11 AAVSAVDQFDPSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQ 70 +A SA Q G + AYDTPLGITNPPIDELL+R SSKYALVIY+AKRARQINDYYNQ Sbjct: 5 SAASAAGQ-----GALPAYDTPLGITNPPIDELLERTSSKYALVIYSAKRARQINDYYNQ 59 Query: 71 LGEGILEYVGPLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 LG+GILEYVGPLVEPGLQEKPLSIA+REIHADLLEHTEGE Sbjct: 60 LGDGILEYVGPLVEPGLQEKPLSIALREIHADLLEHTEGE 99 >tr|D0LCR7|D0LCR7_GORB4 Tax_Id=526226 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Gordonia bronchialis] Length = 99 Score = 162 bits (410), Expect = 1e-38 Identities = 78/83 (93%), Positives = 82/83 (98%) Query: 28 AYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGL 87 AYDTPLGITNPPID+LL+R SSKYALVIYAAKRARQINDYYNQLG+GILEYVGPLVEPGL Sbjct: 17 AYDTPLGITNPPIDDLLERASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGL 76 Query: 88 QEKPLSIAMREIHADLLEHTEGE 110 QEKPLSIAMREIH+DLLEHTEGE Sbjct: 77 QEKPLSIAMREIHSDLLEHTEGE 99 >sp|Q5YTM8|RPOZ_NOCFA Tax_Id=37329 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Nocardia farcinica] Length = 91 Score = 160 bits (404), Expect = 6e-38 Identities = 75/83 (90%), Positives = 82/83 (98%) Query: 28 AYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGL 87 AYDTP+G+TNPPIDELL+R SSKYALVIYAAKRARQINDYYNQLG+GILEYVGPLVEPGL Sbjct: 9 AYDTPIGLTNPPIDELLERTSSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGL 68 Query: 88 QEKPLSIAMREIHADLLEHTEGE 110 QEKPLS+A+REIHADLLEH+EGE Sbjct: 69 QEKPLSVALREIHADLLEHSEGE 91 >tr|B1MCD0|B1MCD0_MYCA9 Tax_Id=561007 SubName: Full=DNA-directed RNA polymerase omega subunit;[Mycobacterium abscessus] Length = 102 Score = 157 bits (397), Expect = 4e-37 Identities = 77/83 (92%), Positives = 79/83 (95%) Query: 28 AYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGL 87 A DTPLGITNPPIDELL R SSKYALVIYAAKRARQINDYYNQLG+GILEYVGPLVEPGL Sbjct: 20 ALDTPLGITNPPIDELLARASSKYALVIYAAKRARQINDYYNQLGDGILEYVGPLVEPGL 79 Query: 88 QEKPLSIAMREIHADLLEHTEGE 110 QEKPLSIA+REIH DLLEHTEGE Sbjct: 80 QEKPLSIALREIHGDLLEHTEGE 102 >tr|C2ATJ9|C2ATJ9_TSUPA Tax_Id=521096 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Tsukamurella paurometabola DSM 20162] Length = 91 Score = 154 bits (389), Expect = 3e-36 Identities = 75/82 (91%), Positives = 76/82 (92%) Query: 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88 YD PLGITNPPIDELLDR SSKYALVIYAAKRARQINDYYN L +GILEYVGPLVEPGL Sbjct: 10 YDQPLGITNPPIDELLDRTSSKYALVIYAAKRARQINDYYNSLSDGILEYVGPLVEPGLH 69 Query: 89 EKPLSIAMREIHADLLEHTEGE 110 EKPLSIAMREIH DLLEHTEGE Sbjct: 70 EKPLSIAMREIHEDLLEHTEGE 91 >tr|C6W8Y6|C6W8Y6_ACTMD Tax_Id=446462 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Actinosynnema mirum] Length = 92 Score = 142 bits (357), Expect = 2e-32 Identities = 69/80 (86%), Positives = 76/80 (95%) Query: 31 TPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEK 90 +P GITNPPID+LL++VSSKYALVIYAAKRARQINDYY QLGEG+LEYVGPLVEPG +EK Sbjct: 13 SPEGITNPPIDDLLEQVSSKYALVIYAAKRARQINDYYAQLGEGLLEYVGPLVEPGPREK 72 Query: 91 PLSIAMREIHADLLEHTEGE 110 PLSIA+REIHA LLEHTEGE Sbjct: 73 PLSIALREIHAGLLEHTEGE 92 >sp|A4FBI2|RPOZ_SACEN Tax_Id=405948 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Saccharopolyspora erythraea] Length = 97 Score = 139 bits (351), Expect = 8e-32 Identities = 67/81 (82%), Positives = 76/81 (93%) Query: 30 DTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQE 89 + P GITNPPID+LL++VSSKYALVIY+AKRARQINDYY QLGEG+LEYVGPLVEPG +E Sbjct: 17 NAPEGITNPPIDDLLEQVSSKYALVIYSAKRARQINDYYAQLGEGLLEYVGPLVEPGPRE 76 Query: 90 KPLSIAMREIHADLLEHTEGE 110 KPLSIA+REIHA +LEHTEGE Sbjct: 77 KPLSIALREIHAGVLEHTEGE 97 >tr|C7MSK0|C7MSK0_SACVD Tax_Id=471857 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Saccharomonospora viridis] Length = 91 Score = 138 bits (348), Expect = 2e-31 Identities = 68/77 (88%), Positives = 73/77 (94%) Query: 34 GITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLS 93 GITNPPIDELL++VSSKYALVIYAAKRARQINDYY QLGEG+LEYVGPLVEPG +EK LS Sbjct: 15 GITNPPIDELLEKVSSKYALVIYAAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKSLS 74 Query: 94 IAMREIHADLLEHTEGE 110 IA+REIHA LLEHTEGE Sbjct: 75 IALREIHAGLLEHTEGE 91 >sp|B1VDN5|RPOZ_CORU7 Tax_Id=504474 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Corynebacterium urealyticum] Length = 93 Score = 130 bits (327), Expect = 5e-29 Identities = 61/81 (75%), Positives = 72/81 (88%) Query: 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88 +D P+GITNPPIDELL +VSSKYAL I+AAKRARQINDY+ + EG+LE+VGPLV P + Sbjct: 13 FDPPVGITNPPIDELLTKVSSKYALAIFAAKRARQINDYFQSIDEGVLEFVGPLVTPEMH 72 Query: 89 EKPLSIAMREIHADLLEHTEG 109 EKPLSIA+REI+ADLLEHTEG Sbjct: 73 EKPLSIALREINADLLEHTEG 93 >sp|Q4JVH5|RPOZ_CORJK Tax_Id=306537 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Corynebacterium jeikeium] Length = 93 Score = 127 bits (320), Expect = 3e-28 Identities = 60/81 (74%), Positives = 71/81 (87%) Query: 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88 +D P+GITNPPIDELL +VSSKYALVI+AAKRARQINDY+ + EG+ E+VGPLV P + Sbjct: 13 FDPPVGITNPPIDELLTKVSSKYALVIFAAKRARQINDYFQTVDEGVFEFVGPLVTPDVH 72 Query: 89 EKPLSIAMREIHADLLEHTEG 109 EKPLSIA+REI+ DLLEHTEG Sbjct: 73 EKPLSIALREINRDLLEHTEG 93 >tr|C8RTC4|C8RTC4_CORJE Tax_Id=525262 SubName: Full=DNA-directed RNA polymerase subunit omega; EC=2.7.7.6;[Corynebacterium jeikeium ATCC 43734] Length = 96 Score = 127 bits (320), Expect = 3e-28 Identities = 60/81 (74%), Positives = 71/81 (87%) Query: 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88 +D P+GITNPPIDELL +VSSKYALVI+AAKRARQINDY+ + EG+ E+VGPLV P + Sbjct: 16 FDPPVGITNPPIDELLTKVSSKYALVIFAAKRARQINDYFQTVDEGVFEFVGPLVTPDVH 75 Query: 89 EKPLSIAMREIHADLLEHTEG 109 EKPLSIA+REI+ DLLEHTEG Sbjct: 76 EKPLSIALREINRDLLEHTEG 96 >sp|P60333|RPOZ_CORDI Tax_Id=1717 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Corynebacterium diphtheriae] Length = 92 Score = 125 bits (314), Expect = 2e-27 Identities = 62/83 (74%), Positives = 66/83 (79%) Query: 27 GAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPG 86 G YD P GIT PPIDELL VSSKYALVI+AAKRARQIN YY Q EG+ E+VGPLV P Sbjct: 10 GVYDAPTGITAPPIDELLKHVSSKYALVIFAAKRARQINSYYQQADEGVFEFVGPLVTPE 69 Query: 87 LQEKPLSIAMREIHADLLEHTEG 109 QEKPLSIAMREI A LL+H EG Sbjct: 70 AQEKPLSIAMREIEAGLLDHEEG 92 >tr|C8XII5|C8XII5_NAKMY Tax_Id=479431 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Nakamurella multipartita] Length = 95 Score = 125 bits (314), Expect = 2e-27 Identities = 66/90 (73%), Positives = 72/90 (80%), Gaps = 4/90 (4%) Query: 21 PSSGGVGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVG 80 PS+ + A GIT PPIDELL R SSKY L IYAAKRARQINDYY QLGEG+LEYVG Sbjct: 10 PSAAAIAA----AGITYPPIDELLTRTSSKYGLSIYAAKRARQINDYYAQLGEGLLEYVG 65 Query: 81 PLVEPGLQEKPLSIAMREIHADLLEHTEGE 110 PLVEP +EKPLSIA+REI+A LL HTEGE Sbjct: 66 PLVEPLPKEKPLSIALREINAGLLTHTEGE 95 >tr|C0UA72|C0UA72_9ACTO Tax_Id=526225 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Geodermatophilus obscurus DSM 43160] Length = 87 Score = 122 bits (306), Expect = 1e-26 Identities = 61/84 (72%), Positives = 68/84 (80%) Query: 27 GAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPG 86 G P GITNPPIDELL+R SSKY LVI+AAKRARQIN YY+QL EG+LEYVGPLV+ Sbjct: 3 GVAPAPEGITNPPIDELLERTSSKYGLVIFAAKRARQINAYYSQLSEGLLEYVGPLVDTA 62 Query: 87 LQEKPLSIAMREIHADLLEHTEGE 110 QEKPLSIA+REI+ LL HT GE Sbjct: 63 PQEKPLSIALREINEGLLTHTAGE 86 >tr|C0WL27|C0WL27_9CORY Tax_Id=525260 (rpoZ)SubName: Full=DNA-directed RNA polymerase subunit omega; EC=2.7.7.6;[Corynebacterium accolens ATCC 49725] Length = 100 Score = 121 bits (303), Expect = 3e-26 Identities = 58/82 (70%), Positives = 69/82 (84%) Query: 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88 +D P+GIT+PPIDELLD+VSSKYALVI+AAKRARQIN YY + EG+ E+VGPLV P Sbjct: 19 FDDPIGITDPPIDELLDKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFVGPLVNPEPG 78 Query: 89 EKPLSIAMREIHADLLEHTEGE 110 EKPLSIA+REI A LL+H EG+ Sbjct: 79 EKPLSIALREIDAGLLDHEEGK 100 >tr|C6RA23|C6RA23_9CORY Tax_Id=553206 (rpoZ)SubName: Full=DNA-directed RNA polymerase, omega subunit; EC=2.7.7.6;[Corynebacterium tuberculostearicum SK141] Length = 100 Score = 120 bits (302), Expect = 4e-26 Identities = 58/82 (70%), Positives = 69/82 (84%) Query: 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88 +D P+GIT+PPIDELLD+VSSKYALVI+AAKRARQIN YY + EG+ E+VGPLV P Sbjct: 19 FDDPIGITDPPIDELLDKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFVGPLVTPEPG 78 Query: 89 EKPLSIAMREIHADLLEHTEGE 110 EKPLSIA+REI A LL+H EG+ Sbjct: 79 EKPLSIALREIDAGLLDHEEGK 100 >tr|C2BPF6|C2BPF6_9CORY Tax_Id=525264 (rpoZ)SubName: Full=DNA-directed RNA polymerase subunit omega; EC=2.7.7.6;[Corynebacterium pseudogenitalium ATCC 33035] Length = 100 Score = 120 bits (302), Expect = 4e-26 Identities = 58/82 (70%), Positives = 69/82 (84%) Query: 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88 +D P+GIT+PPIDELLD+VSSKYALVI+AAKRARQIN YY + EG+ E+VGPLV P Sbjct: 19 FDDPIGITDPPIDELLDKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFVGPLVTPEPG 78 Query: 89 EKPLSIAMREIHADLLEHTEGE 110 EKPLSIA+REI A LL+H EG+ Sbjct: 79 EKPLSIALREIDAGLLDHEEGK 100 >tr|C2CMP9|C2CMP9_CORST Tax_Id=525268 (rpoZ)SubName: Full=DNA-directed RNA polymerase subunit omega; EC=2.7.7.6;[Corynebacterium striatum ATCC 6940] Length = 100 Score = 119 bits (299), Expect = 8e-26 Identities = 58/82 (70%), Positives = 67/82 (81%) Query: 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88 +D P GIT PPIDELLD+VSSKYALVI+AAKRARQIN YY + EG+ E+VGPLV P Sbjct: 19 FDPPTGITAPPIDELLDKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFVGPLVTPEAG 78 Query: 89 EKPLSIAMREIHADLLEHTEGE 110 EKPLSIA+REI A LL+H EG+ Sbjct: 79 EKPLSIALREIEAGLLDHEEGK 100 >tr|C4RHQ5|C4RHQ5_9ACTO Tax_Id=219305 SubName: Full=DNA-directed RNA polymerase, omega subunit;[Micromonospora sp. ATCC 39149] Length = 87 Score = 119 bits (298), Expect = 1e-25 Identities = 59/79 (74%), Positives = 69/79 (87%) Query: 26 VGAYDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEP 85 +G+ P GITNPPIDELL++ +SKYALVI+AAKRARQ+N YY+QLGEG+LEYVGPLVE Sbjct: 1 MGSIANPEGITNPPIDELLEKTTSKYALVIFAAKRARQVNAYYSQLGEGLLEYVGPLVET 60 Query: 86 GLQEKPLSIAMREIHADLL 104 QEKPLSIAMREI+A LL Sbjct: 61 TPQEKPLSIAMREINAGLL 79 >tr|C8NU99|C8NU99_9CORY Tax_Id=585529 SubName: Full=DNA-directed RNA polymerase subunit omega; EC=2.7.7.6;[Corynebacterium genitalium ATCC 33030] Length = 96 Score = 119 bits (297), Expect = 1e-25 Identities = 58/82 (70%), Positives = 66/82 (80%) Query: 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88 YD P GIT PPIDELL +VSSKYALVI+AAKRARQIN YY + EG+ E++GPLV P Sbjct: 15 YDAPEGITAPPIDELLTKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFIGPLVTPQQG 74 Query: 89 EKPLSIAMREIHADLLEHTEGE 110 EKPLSIA+REI A LLEH EG+ Sbjct: 75 EKPLSIALREIEAGLLEHEEGQ 96 >tr|C0XSU8|C0XSU8_9CORY Tax_Id=525263 (rpoZ)SubName: Full=DNA-directed RNA polymerase subunit omega; EC=2.7.7.6;[Corynebacterium lipophiloflavum DSM 44291] Length = 109 Score = 119 bits (297), Expect = 1e-25 Identities = 58/81 (71%), Positives = 65/81 (80%) Query: 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88 YDTP GIT PPIDELL +VSSKYALVI+AAKRARQIN YY + EG+ E++GPLV P Sbjct: 28 YDTPEGITAPPIDELLGKVSSKYALVIFAAKRARQINSYYQEQDEGVFEFIGPLVTPQAG 87 Query: 89 EKPLSIAMREIHADLLEHTEG 109 EKPLSIA+REI LLEH EG Sbjct: 88 EKPLSIALREIQTGLLEHEEG 108 >sp|Q8NQ43|RPOZ_CORGL Tax_Id=1718 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Corynebacterium glutamicum] Length = 97 Score = 118 bits (296), Expect = 2e-25 Identities = 56/81 (69%), Positives = 69/81 (85%) Query: 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88 +D P+GIT PPIDELLD+V+SKYALVI+AAKRARQIN +Y+Q EG+ E++GPLV P Sbjct: 17 FDPPVGITAPPIDELLDKVTSKYALVIFAAKRARQINSFYHQADEGVFEFIGPLVTPQPG 76 Query: 89 EKPLSIAMREIHADLLEHTEG 109 EKPLSIA+REI+A LL+H EG Sbjct: 77 EKPLSIALREINAGLLDHEEG 97 >sp|Q8FT46|RPOZ_COREF Tax_Id=152794 (rpoZ)RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=Transcriptase subunit omega; AltName: Full=RNA polymerase omega subunit;[Corynebacterium efficiens] Length = 97 Score = 118 bits (296), Expect = 2e-25 Identities = 56/81 (69%), Positives = 67/81 (82%) Query: 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88 +D P+GIT PPIDELLD+V+SKYALVI+AAKRARQIN YY Q EG+ E++GPLV P Sbjct: 17 FDPPMGITAPPIDELLDKVTSKYALVIFAAKRARQINSYYQQADEGVFEFIGPLVTPQPG 76 Query: 89 EKPLSIAMREIHADLLEHTEG 109 EKPLSIA+REI+ LL+H EG Sbjct: 77 EKPLSIALREINVGLLDHEEG 97 >tr|A4QEI0|A4QEI0_CORGB Tax_Id=340322 SubName: Full=Putative uncharacterized protein;[Corynebacterium glutamicum] Length = 95 Score = 118 bits (296), Expect = 2e-25 Identities = 56/81 (69%), Positives = 69/81 (85%) Query: 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88 +D P+GIT PPIDELLD+V+SKYALVI+AAKRARQIN +Y+Q EG+ E++GPLV P Sbjct: 15 FDPPVGITAPPIDELLDKVTSKYALVIFAAKRARQINSFYHQADEGVFEFIGPLVTPQPG 74 Query: 89 EKPLSIAMREIHADLLEHTEG 109 EKPLSIA+REI+A LL+H EG Sbjct: 75 EKPLSIALREINAGLLDHEEG 95 >tr|C8NP34|C8NP34_COREF Tax_Id=196164 SubName: Full=DNA-directed RNA polymerase subunit omega (RNAP omega subunit) (Transcriptase subunit omega) (RNA polymerase omega subunit); EC=2.7.7.6;[Corynebacterium efficiens YS-314] Length = 95 Score = 118 bits (296), Expect = 2e-25 Identities = 56/81 (69%), Positives = 67/81 (82%) Query: 29 YDTPLGITNPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQ 88 +D P+GIT PPIDELLD+V+SKYALVI+AAKRARQIN YY Q EG+ E++GPLV P Sbjct: 15 FDPPMGITAPPIDELLDKVTSKYALVIFAAKRARQINSYYQQADEGVFEFIGPLVTPQPG 74 Query: 89 EKPLSIAMREIHADLLEHTEG 109 EKPLSIA+REI+ LL+H EG Sbjct: 75 EKPLSIALREINVGLLDHEEG 95 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.313 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 871,175,276 Number of extensions: 32932585 Number of successful extensions: 64246 Number of sequences better than 10.0: 646 Number of HSP's gapped: 64722 Number of HSP's successfully gapped: 646 Length of query: 110 Length of database: 3,846,993,858 Length adjustment: 78 Effective length of query: 32 Effective length of database: 2,967,528,024 Effective search space: 94960896768 Effective search space used: 94960896768 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 75 (33.5 bits)