BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MMAR_2280
         (63 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,275,203 sequences; 3,846,993,858 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|B2HPC5|B2HPC5_MYCMM Tax_Id=216594 SubName: Full=Transcription...   129   1e-28
tr|A0PNT5|A0PNT5_MYCUA Tax_Id=362242 SubName: Full=Transcription...   129   1e-28
tr|Q8VK14|Q8VK14_MYCTU Tax_Id=1773 SubName: Full=POSSIBLE TRANSC...   114   4e-24
tr|C6DSX4|C6DSX4_MYCTK Tax_Id=478434 SubName: Full=Transcription...   114   4e-24
tr|A5U2H7|A5U2H7_MYCTA Tax_Id=419947 SubName: Full=Putative tran...   114   4e-24
tr|A5WMF6|A5WMF6_MYCTF Tax_Id=336982 SubName: Full=Hypothetical ...   114   4e-24
tr|A4KH18|A4KH18_MYCTU Tax_Id=395095 SubName: Full=Hypothetical ...   114   4e-24
tr|A2VHZ2|A2VHZ2_MYCTU Tax_Id=348776 SubName: Full=Putative unch...   114   4e-24
tr|Q7U002|Q7U002_MYCBO Tax_Id=1765 SubName: Full=POSSIBLE TRANSC...   112   1e-23
tr|C1ANB9|C1ANB9_MYCBT Tax_Id=561275 SubName: Full=Putative tran...   112   1e-23
tr|A1KIR3|A1KIR3_MYCBP Tax_Id=410289 SubName: Full=Possible tran...   112   1e-23
tr|Q740Z3|Q740Z3_MYCPA Tax_Id=1770 SubName: Full=Putative unchar...   100   4e-20
tr|Q1B979|Q1B979_MYCSS Tax_Id=164756 SubName: Full=Putative unch...   100   4e-20
tr|A3PZE1|A3PZE1_MYCSJ Tax_Id=164757 SubName: Full=Putative unch...   100   4e-20
tr|A1UFT1|A1UFT1_MYCSK Tax_Id=189918 SubName: Full=Putative unch...   100   4e-20
tr|A0QHU9|A0QHU9_MYCA1 Tax_Id=243243 SubName: Full=Conserved dom...   100   4e-20
tr|A0QX18|A0QX18_MYCS2 Tax_Id=246196 SubName: Full=Conserved dom...    96   1e-18
tr|A1T8Q0|A1T8Q0_MYCVP Tax_Id=350058 SubName: Full=Putative unch...    94   4e-18
tr|A4TC62|A4TC62_MYCGI Tax_Id=350054 SubName: Full=Putative unch...    94   6e-18
tr|B1MC43|B1MC43_MYCA9 Tax_Id=561007 SubName: Full=Putative unch...    72   2e-11
tr|Q5YU06|Q5YU06_NOCFA Tax_Id=37329 SubName: Full=Putative uncha...    68   4e-10
tr|C0UB47|C0UB47_9ACTO Tax_Id=526225 SubName: Full=Transcription...    66   1e-09
tr|Q9RJ29|Q9RJ29_STRCO Tax_Id=1902 SubName: Full=Putative transc...    64   4e-09
tr|B5GGG2|B5GGG2_9ACTO Tax_Id=465543 SubName: Full=Transcription...    64   6e-09
tr|A8L082|A8L082_FRASN Tax_Id=298653 SubName: Full=Putative tran...    64   7e-09
tr|Q829I4|Q829I4_STRAW Tax_Id=33903 SubName: Full=Putative trans...    63   9e-09
tr|Q2JCE2|Q2JCE2_FRASC Tax_Id=106370 SubName: Full=Transcription...    63   9e-09
tr|Q0RH50|Q0RH50_FRAAA Tax_Id=326424 SubName: Full=Putative tran...    63   9e-09
tr|B1W1T6|B1W1T6_STRGG Tax_Id=455632 SubName: Full=Putative unch...    63   9e-09
tr|C9YZR9|C9YZR9_STRSW Tax_Id=680198 SubName: Full=Putative unch...    63   9e-09
tr|C9NHR3|C9NHR3_9ACTO Tax_Id=591167 SubName: Full=Putative unch...    63   9e-09
tr|C7QJG7|C7QJG7_CATAD Tax_Id=479433 SubName: Full=Transcription...    63   9e-09
tr|B5I2T3|B5I2T3_9ACTO Tax_Id=463191 SubName: Full=Transcription...    63   9e-09
tr|C6W8A7|C6W8A7_ACTMD Tax_Id=446462 SubName: Full=Transcription...    62   3e-08
tr|Q47NQ7|Q47NQ7_THEFY Tax_Id=269800 SubName: Full=Transcription...    61   4e-08
tr|B5HKQ1|B5HKQ1_STRPR Tax_Id=457429 SubName: Full=Transcription...    61   4e-08
tr|B4VE53|B4VE53_9ACTO Tax_Id=465541 SubName: Full=Transcription...    61   4e-08
tr|A6WC34|A6WC34_KINRD Tax_Id=266940 SubName: Full=Putative unch...    60   8e-08
tr|C1YK47|C1YK47_NOCDA Tax_Id=446468 SubName: Full=Transcription...    60   8e-08
tr|A4FBR9|A4FBR9_SACEN Tax_Id=405948 SubName: Full=Transcription...    60   1e-07
tr|A0LU03|A0LU03_ACIC1 Tax_Id=351607 SubName: Full=Transcription...    60   1e-07
tr|C7MT29|C7MT29_SACVD Tax_Id=471857 SubName: Full=Transcription...    59   1e-07
tr|D1A1W7|D1A1W7_THECU Tax_Id=471852 SubName: Full=Putative unch...    59   1e-07
tr|A8LVZ4|A8LVZ4_SALAI Tax_Id=391037 SubName: Full=Putative unch...    55   2e-06
tr|A4X9E3|A4X9E3_SALTO Tax_Id=369723 SubName: Full=Transcription...    55   2e-06
tr|C4RKC8|C4RKC8_9ACTO Tax_Id=219305 SubName: Full=Transcription...    55   3e-06
tr|B4UYZ2|B4UYZ2_9ACTO Tax_Id=465541 SubName: Full=Transcription...    55   3e-06
tr|Q0S0G7|Q0S0G7_RHOSR Tax_Id=101510 SubName: Full=Possible tran...    54   7e-06
tr|C1B4Q1|C1B4Q1_RHOOB Tax_Id=632772 SubName: Full=Putative unch...    54   7e-06
tr|C8XKA5|C8XKA5_NAKMY Tax_Id=479431 SubName: Full=Putative unch...    53   1e-05

>tr|B2HPC5|B2HPC5_MYCMM Tax_Id=216594 SubName:
          Full=Transcriptional regulatory protein;[Mycobacterium
          marinum]
          Length = 63

 Score =  129 bits (323), Expect = 1e-28
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS
Sbjct: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60

Query: 61 RPR 63
          RPR
Sbjct: 61 RPR 63


>tr|A0PNT5|A0PNT5_MYCUA Tax_Id=362242 SubName:
          Full=Transcriptional regulatory protein;[Mycobacterium
          ulcerans]
          Length = 63

 Score =  129 bits (323), Expect = 1e-28
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS
Sbjct: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60

Query: 61 RPR 63
          RPR
Sbjct: 61 RPR 63


>tr|Q8VK14|Q8VK14_MYCTU Tax_Id=1773 SubName: Full=POSSIBLE
          TRANSCRIPTIONAL REGULATORY PROTEIN; SubName:
          Full=Putative uncharacterized protein;[Mycobacterium
          tuberculosis]
          Length = 63

 Score =  114 bits (285), Expect = 4e-24
 Identities = 56/63 (88%), Positives = 58/63 (92%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          MRKSKKTRDQLL ELR+AYE GASIRNLAA TGRSYGS+HSMLRESGTTMR RGGPN RS
Sbjct: 1  MRKSKKTRDQLLRELRNAYEGGASIRNLAATTGRSYGSIHSMLRESGTTMRGRGGPNRRS 60

Query: 61 RPR 63
          RPR
Sbjct: 61 RPR 63


>tr|C6DSX4|C6DSX4_MYCTK Tax_Id=478434 SubName:
          Full=Transcriptional regulator;[Mycobacterium
          tuberculosis]
          Length = 63

 Score =  114 bits (285), Expect = 4e-24
 Identities = 56/63 (88%), Positives = 58/63 (92%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          MRKSKKTRDQLL ELR+AYE GASIRNLAA TGRSYGS+HSMLRESGTTMR RGGPN RS
Sbjct: 1  MRKSKKTRDQLLRELRNAYEGGASIRNLAATTGRSYGSIHSMLRESGTTMRGRGGPNRRS 60

Query: 61 RPR 63
          RPR
Sbjct: 61 RPR 63


>tr|A5U2H7|A5U2H7_MYCTA Tax_Id=419947 SubName: Full=Putative
          transcriptional regulatory protein;[Mycobacterium
          tuberculosis]
          Length = 63

 Score =  114 bits (285), Expect = 4e-24
 Identities = 56/63 (88%), Positives = 58/63 (92%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          MRKSKKTRDQLL ELR+AYE GASIRNLAA TGRSYGS+HSMLRESGTTMR RGGPN RS
Sbjct: 1  MRKSKKTRDQLLRELRNAYEGGASIRNLAATTGRSYGSIHSMLRESGTTMRGRGGPNRRS 60

Query: 61 RPR 63
          RPR
Sbjct: 61 RPR 63


>tr|A5WMF6|A5WMF6_MYCTF Tax_Id=336982 SubName: Full=Hypothetical
          transcriptional regulatory protein;[Mycobacterium
          tuberculosis]
          Length = 63

 Score =  114 bits (285), Expect = 4e-24
 Identities = 56/63 (88%), Positives = 58/63 (92%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          MRKSKKTRDQLL ELR+AYE GASIRNLAA TGRSYGS+HSMLRESGTTMR RGGPN RS
Sbjct: 1  MRKSKKTRDQLLRELRNAYEGGASIRNLAATTGRSYGSIHSMLRESGTTMRGRGGPNRRS 60

Query: 61 RPR 63
          RPR
Sbjct: 61 RPR 63


>tr|A4KH18|A4KH18_MYCTU Tax_Id=395095 SubName: Full=Hypothetical
          transcriptional regulatory protein;[Mycobacterium
          tuberculosis str. Haarlem]
          Length = 63

 Score =  114 bits (285), Expect = 4e-24
 Identities = 56/63 (88%), Positives = 58/63 (92%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          MRKSKKTRDQLL ELR+AYE GASIRNLAA TGRSYGS+HSMLRESGTTMR RGGPN RS
Sbjct: 1  MRKSKKTRDQLLRELRNAYEGGASIRNLAATTGRSYGSIHSMLRESGTTMRGRGGPNRRS 60

Query: 61 RPR 63
          RPR
Sbjct: 61 RPR 63


>tr|A2VHZ2|A2VHZ2_MYCTU Tax_Id=348776 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium tuberculosis C]
          Length = 63

 Score =  114 bits (285), Expect = 4e-24
 Identities = 56/63 (88%), Positives = 58/63 (92%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          MRKSKKTRDQLL ELR+AYE GASIRNLAA TGRSYGS+HSMLRESGTTMR RGGPN RS
Sbjct: 1  MRKSKKTRDQLLRELRNAYEGGASIRNLAATTGRSYGSIHSMLRESGTTMRGRGGPNRRS 60

Query: 61 RPR 63
          RPR
Sbjct: 61 RPR 63


>tr|Q7U002|Q7U002_MYCBO Tax_Id=1765 SubName: Full=POSSIBLE
          TRANSCRIPTIONAL REGULATORY PROTEIN;[Mycobacterium
          bovis]
          Length = 63

 Score =  112 bits (280), Expect = 1e-23
 Identities = 55/63 (87%), Positives = 57/63 (90%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          MRKSKKTRDQLL ELR+AYE GASIRNLAA TGRSYGS+HSMLRESGTTMR RGGPN R 
Sbjct: 1  MRKSKKTRDQLLRELRNAYEGGASIRNLAATTGRSYGSIHSMLRESGTTMRGRGGPNRRP 60

Query: 61 RPR 63
          RPR
Sbjct: 61 RPR 63


>tr|C1ANB9|C1ANB9_MYCBT Tax_Id=561275 SubName: Full=Putative
          transcriptional regulatory protein;[Mycobacterium
          bovis]
          Length = 63

 Score =  112 bits (280), Expect = 1e-23
 Identities = 55/63 (87%), Positives = 57/63 (90%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          MRKSKKTRDQLL ELR+AYE GASIRNLAA TGRSYGS+HSMLRESGTTMR RGGPN R 
Sbjct: 1  MRKSKKTRDQLLRELRNAYEGGASIRNLAATTGRSYGSIHSMLRESGTTMRGRGGPNRRP 60

Query: 61 RPR 63
          RPR
Sbjct: 61 RPR 63


>tr|A1KIR3|A1KIR3_MYCBP Tax_Id=410289 SubName: Full=Possible
          transcriptional regulatory protein;[Mycobacterium
          bovis]
          Length = 63

 Score =  112 bits (280), Expect = 1e-23
 Identities = 55/63 (87%), Positives = 57/63 (90%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          MRKSKKTRDQLL ELR+AYE GASIRNLAA TGRSYGS+HSMLRESGTTMR RGGPN R 
Sbjct: 1  MRKSKKTRDQLLRELRNAYEGGASIRNLAATTGRSYGSIHSMLRESGTTMRGRGGPNRRP 60

Query: 61 RPR 63
          RPR
Sbjct: 61 RPR 63


>tr|Q740Z3|Q740Z3_MYCPA Tax_Id=1770 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium
          paratuberculosis]
          Length = 65

 Score =  100 bits (250), Expect = 4e-20
 Identities = 47/61 (77%), Positives = 55/61 (90%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          M++S  +RDQLLDELRHAYE+GASIR+L A TGRSYGS+HSMLRESGTTMRSRGGPN  +
Sbjct: 1  MQRSANSRDQLLDELRHAYESGASIRSLVARTGRSYGSIHSMLRESGTTMRSRGGPNRTA 60

Query: 61 R 61
          +
Sbjct: 61 K 61


>tr|Q1B979|Q1B979_MYCSS Tax_Id=164756 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium sp.]
          Length = 66

 Score =  100 bits (250), Expect = 4e-20
 Identities = 48/61 (78%), Positives = 55/61 (90%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          M+KS+K+R++LL+ELR  YE GASIR L A TGRSYGS+HSMLRESGTTMRSRGGPNHRS
Sbjct: 1  MKKSEKSREELLNELRAEYEGGASIRALVAKTGRSYGSIHSMLRESGTTMRSRGGPNHRS 60

Query: 61 R 61
          R
Sbjct: 61 R 61


>tr|A3PZE1|A3PZE1_MYCSJ Tax_Id=164757 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium sp.]
          Length = 66

 Score =  100 bits (250), Expect = 4e-20
 Identities = 48/61 (78%), Positives = 55/61 (90%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          M+KS+K+R++LL+ELR  YE GASIR L A TGRSYGS+HSMLRESGTTMRSRGGPNHRS
Sbjct: 1  MKKSEKSREELLNELRAEYEGGASIRALVAKTGRSYGSIHSMLRESGTTMRSRGGPNHRS 60

Query: 61 R 61
          R
Sbjct: 61 R 61


>tr|A1UFT1|A1UFT1_MYCSK Tax_Id=189918 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium sp.]
          Length = 66

 Score =  100 bits (250), Expect = 4e-20
 Identities = 48/61 (78%), Positives = 55/61 (90%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          M+KS+K+R++LL+ELR  YE GASIR L A TGRSYGS+HSMLRESGTTMRSRGGPNHRS
Sbjct: 1  MKKSEKSREELLNELRAEYEGGASIRALVAKTGRSYGSIHSMLRESGTTMRSRGGPNHRS 60

Query: 61 R 61
          R
Sbjct: 61 R 61


>tr|A0QHU9|A0QHU9_MYCA1 Tax_Id=243243 SubName: Full=Conserved
          domain protein;[Mycobacterium avium]
          Length = 65

 Score =  100 bits (250), Expect = 4e-20
 Identities = 47/61 (77%), Positives = 55/61 (90%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          M++S  +RDQLLDELRHAYE+GASIR+L A TGRSYGS+HSMLRESGTTMRSRGGPN  +
Sbjct: 1  MQRSANSRDQLLDELRHAYESGASIRSLVARTGRSYGSIHSMLRESGTTMRSRGGPNRTA 60

Query: 61 R 61
          +
Sbjct: 61 K 61


>tr|A0QX18|A0QX18_MYCS2 Tax_Id=246196 SubName: Full=Conserved
          domain protein;[Mycobacterium smegmatis]
          Length = 65

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 46/60 (76%), Positives = 51/60 (85%)

Query: 4  SKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRSRPR 63
          S   RD+LL ELR AYE GASIR+L A TGRSYGS+HS+LRESGTTMRSRGGPNHRS+ R
Sbjct: 5  SYSNRDELLTELRRAYEEGASIRSLVARTGRSYGSIHSLLRESGTTMRSRGGPNHRSKQR 64


>tr|A1T8Q0|A1T8Q0_MYCVP Tax_Id=350058 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium vanbaalenii]
          Length = 87

 Score = 94.4 bits (233), Expect = 4e-18
 Identities = 44/61 (72%), Positives = 52/61 (85%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          ++K+ K++DQL+ ELR AYE GASIR+L A TG SYGS+HSMLRESGT MRSRGGPNHR 
Sbjct: 24 VKKNGKSKDQLMTELRSAYERGASIRSLVATTGHSYGSIHSMLRESGTPMRSRGGPNHRG 83

Query: 61 R 61
          R
Sbjct: 84 R 84


>tr|A4TC62|A4TC62_MYCGI Tax_Id=350054 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium gilvum]
          Length = 64

 Score = 93.6 bits (231), Expect = 6e-18
 Identities = 43/61 (70%), Positives = 52/61 (85%)

Query: 1  MRKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          M+   K+RDQL+ ELR+AYE GASIR+L A+TG SYGS+HS+LRE+G TMRSRGGPNHR 
Sbjct: 1  MKNIGKSRDQLMSELRNAYERGASIRSLVASTGHSYGSIHSLLREAGVTMRSRGGPNHRG 60

Query: 61 R 61
          R
Sbjct: 61 R 61


>tr|B1MC43|B1MC43_MYCA9 Tax_Id=561007 SubName: Full=Putative
          uncharacterized protein;[Mycobacterium abscessus]
          Length = 60

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 36/56 (64%), Positives = 39/56 (69%)

Query: 6  KTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRSR 61
          KTRD+   EL+  YE GASIR LAA TGRSYG VH  L ESG  +R RGGPN R R
Sbjct: 3  KTRDEERAELKAGYEKGASIRTLAAETGRSYGYVHRALVESGVVLRGRGGPNRRGR 58


>tr|Q5YU06|Q5YU06_NOCFA Tax_Id=37329 SubName: Full=Putative
          uncharacterized protein;[Nocardia farcinica]
          Length = 79

 Score = 67.8 bits (164), Expect = 4e-10
 Identities = 33/61 (54%), Positives = 43/61 (70%)

Query: 2  RKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRSR 61
          R + K+RD+L  +L+  YE GASIR+LA  TGRSYG +H++L ES   +RSRGG N R  
Sbjct: 17 RVTGKSRDRLQSQLKKQYEQGASIRSLARATGRSYGFIHNVLVESHVQLRSRGGANRRKN 76

Query: 62 P 62
          P
Sbjct: 77 P 77


>tr|C0UB47|C0UB47_9ACTO Tax_Id=526225 SubName:
          Full=Transcriptional regulator;[Geodermatophilus
          obscurus DSM 43160]
          Length = 75

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 31/54 (57%), Positives = 39/54 (72%)

Query: 8  RDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRSR 61
          R  L DELR  Y+ G SIR+LA++T RSYG VH +L ESG ++RSRGG N  S+
Sbjct: 20 RTSLADELRKRYDGGESIRSLASSTNRSYGFVHRLLSESGASLRSRGGANRNSK 73


>tr|Q9RJ29|Q9RJ29_STRCO Tax_Id=1902 SubName: Full=Putative
          transcriptional regulator;[Streptomyces coelicolor]
          Length = 73

 Score = 64.3 bits (155), Expect = 4e-09
 Identities = 32/54 (59%), Positives = 38/54 (70%)

Query: 2  RKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGG 55
          R +   RD+L  +L+  Y+AGASIR LA  TGRSYG VH ML ESG T+R RGG
Sbjct: 10 RVTGAARDKLAADLKKKYDAGASIRALAEETGRSYGFVHRMLSESGVTLRGRGG 63


>tr|B5GGG2|B5GGG2_9ACTO Tax_Id=465543 SubName:
          Full=Transcriptional regulator;[Streptomyces sp. SPB74]
          Length = 74

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 32/60 (53%), Positives = 38/60 (63%)

Query: 2  RKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRSR 61
          R +   RD L  +L+  Y+ GASIR LA  TGRSYG VH ML+ESG T+R RGG     R
Sbjct: 10 RVTGAARDTLAADLKKKYDGGASIRALAEETGRSYGFVHRMLKESGVTLRGRGGATRGKR 69


>tr|A8L082|A8L082_FRASN Tax_Id=298653 SubName: Full=Putative
          transcriptional regulator;[Frankia sp.]
          Length = 72

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 31/56 (55%), Positives = 40/56 (71%)

Query: 8  RDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRSRPR 63
          RD+L  ELR  YE+G SIR LA ++GRSYG VH +L ESGTT+R RGG    ++ +
Sbjct: 15 RDKLAAELRKKYESGQSIRLLAESSGRSYGFVHRILSESGTTLRGRGGATRGTKKK 70


>tr|Q829I4|Q829I4_STRAW Tax_Id=33903 SubName: Full=Putative
          transcriptional regulator;[Streptomyces avermitilis]
          Length = 73

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 31/54 (57%), Positives = 38/54 (70%)

Query: 2  RKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGG 55
          R +   RD+L  +L+  Y++GASIR LA  TGRSYG VH ML ESG T+R RGG
Sbjct: 10 RVTGAARDKLAADLKKKYDSGASIRALAEETGRSYGFVHRMLSESGVTLRGRGG 63


>tr|Q2JCE2|Q2JCE2_FRASC Tax_Id=106370 SubName:
          Full=Transcriptional regulator;[Frankia sp.]
          Length = 72

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 8  RDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRSRPR 63
          RD+L  ELR  YE G SIR LA ++GRSYG VH +L ESGTT+R RGG    ++ +
Sbjct: 15 RDKLAAELRKKYEGGQSIRLLAESSGRSYGFVHRILSESGTTLRGRGGATRGTKKK 70


>tr|Q0RH50|Q0RH50_FRAAA Tax_Id=326424 SubName: Full=Putative
          transcriptional regulator;[Frankia alni]
          Length = 72

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 8  RDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRSRPR 63
          RD+L  ELR  YE G SIR LA ++GRSYG VH +L ESGTT+R RGG    ++ +
Sbjct: 15 RDKLAAELRKKYEGGQSIRLLAESSGRSYGFVHRILSESGTTLRGRGGATRGTKKK 70


>tr|B1W1T6|B1W1T6_STRGG Tax_Id=455632 SubName: Full=Putative
          uncharacterized protein;[Streptomyces griseus subsp.
          griseus]
          Length = 73

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 31/54 (57%), Positives = 38/54 (70%)

Query: 2  RKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGG 55
          R +   RD+L  +L+  Y++GASIR LA  TGRSYG VH ML ESG T+R RGG
Sbjct: 10 RVTGAARDKLAADLKKKYDSGASIRALAEETGRSYGFVHRMLSESGVTLRGRGG 63


>tr|C9YZR9|C9YZR9_STRSW Tax_Id=680198 SubName: Full=Putative
          uncharacterized protein;[Streptomyces scabies]
          Length = 73

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 31/54 (57%), Positives = 38/54 (70%)

Query: 2  RKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGG 55
          R +   RD+L  +L+  Y++GASIR LA  TGRSYG VH ML ESG T+R RGG
Sbjct: 10 RVTGAARDKLAADLKKKYDSGASIRALAEETGRSYGFVHRMLSESGVTLRGRGG 63


>tr|C9NHR3|C9NHR3_9ACTO Tax_Id=591167 SubName: Full=Putative
          uncharacterized protein;[Streptomyces flavogriseus ATCC
          33331]
          Length = 73

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 31/54 (57%), Positives = 38/54 (70%)

Query: 2  RKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGG 55
          R +   RD+L  +L+  Y++GASIR LA  TGRSYG VH ML ESG T+R RGG
Sbjct: 10 RVTGAARDKLAADLKKKYDSGASIRALAEETGRSYGFVHRMLSESGVTLRGRGG 63


>tr|C7QJG7|C7QJG7_CATAD Tax_Id=479433 SubName:
          Full=Transcriptional regulator;[Catenulispora
          acidiphila]
          Length = 72

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 32/54 (59%), Positives = 37/54 (68%)

Query: 2  RKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGG 55
          R +   R QL  +L+  YEAG SIR LA +TGRSYG VH ML ESG T+R RGG
Sbjct: 10 RVTGDARSQLATDLKAKYEAGESIRALAQSTGRSYGFVHRMLSESGVTLRGRGG 63


>tr|B5I2T3|B5I2T3_9ACTO Tax_Id=463191 SubName:
          Full=Transcriptional regulator;[Streptomyces sviceus
          ATCC 29083]
          Length = 73

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 31/54 (57%), Positives = 38/54 (70%)

Query: 2  RKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGG 55
          R +   RD+L  +L+  Y++GASIR LA  TGRSYG VH ML ESG T+R RGG
Sbjct: 10 RVTGAARDKLAADLKKKYDSGASIRALAEETGRSYGFVHRMLSESGVTLRGRGG 63


>tr|C6W8A7|C6W8A7_ACTMD Tax_Id=446462 SubName:
          Full=Transcriptional regulator;[Actinosynnema mirum]
          Length = 69

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 30/49 (61%), Positives = 36/49 (73%)

Query: 7  TRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGG 55
          TRD+L  +L+  YE GASIR LA +TGRSYG VH +L ESG  +R RGG
Sbjct: 14 TRDKLAADLKKKYEKGASIRALAESTGRSYGFVHRVLSESGVQLRGRGG 62


>tr|Q47NQ7|Q47NQ7_THEFY Tax_Id=269800 SubName:
          Full=Transcriptional regulator;[Thermobifida fusca]
          Length = 70

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 30/60 (50%), Positives = 39/60 (65%)

Query: 2  RKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRSR 61
          R + + R  L  +L+  Y+ G SIR LAA TGRSYG VH +L E+G T+R RGG   R+R
Sbjct: 10 RVTGEERSDLASDLKRRYDNGESIRALAAATGRSYGFVHRLLLEAGATLRGRGGATRRNR 69


>tr|B5HKQ1|B5HKQ1_STRPR Tax_Id=457429 SubName:
          Full=Transcriptional regulator;[Streptomyces
          pristinaespiralis ATCC 25486]
          Length = 73

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 30/54 (55%), Positives = 37/54 (68%)

Query: 2  RKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGG 55
          R +   RD+L  +L+  Y++GASIR LA  TGRSYG VH ML ESG  +R RGG
Sbjct: 10 RVTGAARDKLAADLKKKYDSGASIRALAEETGRSYGFVHRMLSESGVVLRGRGG 63


>tr|B4VE53|B4VE53_9ACTO Tax_Id=465541 SubName:
          Full=Transcriptional regulator;[Streptomyces sp. Mg1]
          Length = 73

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 30/54 (55%), Positives = 37/54 (68%)

Query: 2  RKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGG 55
          R +   RD+L  +L+  Y++GASIR LA  TGRSYG VH ML ESG  +R RGG
Sbjct: 10 RVTGAARDKLAADLKKKYDSGASIRALAEETGRSYGFVHRMLSESGVVLRGRGG 63


>tr|A6WC34|A6WC34_KINRD Tax_Id=266940 SubName: Full=Putative
          uncharacterized protein;[Kineococcus radiotolerans]
          Length = 86

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 31/54 (57%), Positives = 35/54 (64%)

Query: 2  RKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGG 55
          R S   R+QL DEL   Y  G SIR LA  TGRSYG VH +L E+  T+RSRGG
Sbjct: 24 RLSGAEREQLADELSKGYAEGKSIRALAEETGRSYGFVHRLLSENDVTLRSRGG 77


>tr|C1YK47|C1YK47_NOCDA Tax_Id=446468 SubName:
          Full=Transcriptional regulator;[Nocardiopsis
          dassonvillei subsp. dassonvillei DSM 43111]
          Length = 68

 Score = 60.1 bits (144), Expect = 8e-08
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 2  RKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRS 60
          R + + R  L  +L+  Y+AG SIR LAA TGRSYG VH +L E+G  +R RGGP  ++
Sbjct: 10 RLAGEDRSALAAQLKSRYDAGESIRMLAAATGRSYGFVHRLLSEAGVELRGRGGPTRKA 68


>tr|A4FBR9|A4FBR9_SACEN Tax_Id=405948 SubName:
          Full=Transcriptional regulator;[Saccharopolyspora
          erythraea]
          Length = 69

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 30/54 (55%), Positives = 36/54 (66%)

Query: 2  RKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGG 55
          R +   RD+L  +L+  YE GASIR LA  TGRSYG VH +L ESG  +R RGG
Sbjct: 9  RITGSARDKLASDLKKKYEKGASIRALAEATGRSYGFVHRVLSESGVQLRGRGG 62


>tr|A0LU03|A0LU03_ACIC1 Tax_Id=351607 SubName:
          Full=Transcriptional regulator;[Acidothermus
          cellulolyticus]
          Length = 72

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 33/61 (54%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 2  RKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNH-RS 60
          R +   R++L  ELR  Y+ G SIR LA  TGRSYG VH +L ESGT +R RGG    RS
Sbjct: 10 RVTGSERERLAAELRKKYDQGLSIRALAEQTGRSYGFVHRILTESGTQLRGRGGATRGRS 69

Query: 61 R 61
          R
Sbjct: 70 R 70


>tr|C7MT29|C7MT29_SACVD Tax_Id=471857 SubName:
          Full=Transcriptional regulator;[Saccharomonospora
          viridis]
          Length = 69

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 30/54 (55%), Positives = 37/54 (68%)

Query: 2  RKSKKTRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGG 55
          R +  TR++L  +L+  YE GASIR LA  TGRSYG VH +L ESG  +R RGG
Sbjct: 9  RITGNTREKLAADLKKKYEKGASIRALAEATGRSYGFVHRVLSESGVQLRGRGG 62


>tr|D1A1W7|D1A1W7_THECU Tax_Id=471852 SubName: Full=Putative
          uncharacterized protein;[Thermomonospora curvata DSM
          43183]
          Length = 70

 Score = 59.3 bits (142), Expect = 1e-07
 Identities = 28/48 (58%), Positives = 35/48 (72%)

Query: 8  RDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGG 55
          RD+L  EL+  Y++G SIR LAA TGRSYG +H +L ESG  +R RGG
Sbjct: 16 RDKLAAELKKRYDSGESIRALAAATGRSYGFIHRILTESGVNLRGRGG 63


>tr|A8LVZ4|A8LVZ4_SALAI Tax_Id=391037 SubName: Full=Putative
          uncharacterized protein;[Salinispora arenicola]
          Length = 75

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 27/54 (50%), Positives = 34/54 (62%)

Query: 8  RDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRSR 61
          R  L  +L   Y +G SIR LAA+TGRSYG +H +L ESG  +R RGG   R +
Sbjct: 21 RQTLAKDLVKRYTSGESIRALAASTGRSYGFIHRVLTESGVQLRQRGGARRRKK 74


>tr|A4X9E3|A4X9E3_SALTO Tax_Id=369723 SubName:
          Full=Transcriptional regulator;[Salinispora tropica]
          Length = 75

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 27/54 (50%), Positives = 34/54 (62%)

Query: 8  RDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRSR 61
          R  L  +L   Y +G SIR LAA+TGRSYG +H +L ESG  +R RGG   R +
Sbjct: 21 RQTLAKDLVKRYTSGESIRALAASTGRSYGFIHRVLTESGVQLRQRGGARRRKK 74


>tr|C4RKC8|C4RKC8_9ACTO Tax_Id=219305 SubName:
          Full=Transcriptional regulator;[Micromonospora sp. ATCC
          39149]
          Length = 75

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 27/54 (50%), Positives = 33/54 (61%)

Query: 8  RDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHRSR 61
          R  L  +L   Y  G SIR LAA+TGRSYG +H +L ESG  +R RGG   R +
Sbjct: 21 RQTLAKDLVKRYTGGESIRALAASTGRSYGFIHRVLTESGVQLRQRGGARRRKK 74


>tr|B4UYZ2|B4UYZ2_9ACTO Tax_Id=465541 SubName:
          Full=Transcriptional regulator;[Streptomyces sp. Mg1]
          Length = 71

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 27/48 (56%), Positives = 34/48 (70%)

Query: 8  RDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGG 55
          RD++   L+  YEAGASIR  A +TGRSYG VH +L ++G   RSRGG
Sbjct: 16 RDKVAAGLKAKYEAGASIRARAEDTGRSYGGVHRLLVDAGVIFRSRGG 63


>tr|Q0S0G7|Q0S0G7_RHOSR Tax_Id=101510 SubName: Full=Possible
          transcriptional regulator;[Rhodococcus sp.]
          Length = 83

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 27/53 (50%), Positives = 35/53 (66%)

Query: 7  TRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHR 59
          +R  L  EL+  Y+AGASIR+LA   GRSYG V ++L ES   +R RGG + R
Sbjct: 29 SRADLQAELKERYQAGASIRSLAREMGRSYGFVRNILAESEVELRGRGGAHRR 81


>tr|C1B4Q1|C1B4Q1_RHOOB Tax_Id=632772 SubName: Full=Putative
          uncharacterized protein;[Rhodococcus opacus]
          Length = 83

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 27/53 (50%), Positives = 35/53 (66%)

Query: 7  TRDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGGPNHR 59
          +R  L  EL+  Y+AGASIR+LA   GRSYG V ++L ES   +R RGG + R
Sbjct: 29 SRADLQAELKQRYQAGASIRSLAREMGRSYGFVRNILAESEVELRGRGGAHRR 81


>tr|C8XKA5|C8XKA5_NAKMY Tax_Id=479431 SubName: Full=Putative
          uncharacterized protein;[Nakamurella multipartita]
          Length = 82

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 26/48 (54%), Positives = 32/48 (66%)

Query: 8  RDQLLDELRHAYEAGASIRNLAANTGRSYGSVHSMLRESGTTMRSRGG 55
          RD+L  +LR  YE G SIR LA  TGRSYG VH +L ++   +R RGG
Sbjct: 28 RDKLAADLRKKYEKGQSIRALAEGTGRSYGFVHRLLLDAEVPLRGRGG 75


  Database: Amellifera_nr
    Posted date:  Feb 5, 2010  5:10 AM
  Number of letters in database: 3,846,993,858
  Number of sequences in database:  11,275,203
  
Lambda     K      H
   0.314    0.126    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11275203
Number of Hits to DB: 457,041,859
Number of extensions: 13409793
Number of successful extensions: 53408
Number of sequences better than 10.0: 60
Number of HSP's gapped: 53579
Number of HSP's successfully gapped: 61
Length of query: 63
Length of database: 3,846,993,858
Length adjustment: 35
Effective length of query: 28
Effective length of database: 3,452,361,753
Effective search space: 96666129084
Effective search space used: 96666129084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 75 (33.5 bits)