BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_3051 (184 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HFS4|B2HFS4_MYCMM Tax_Id=216594 (sigC)RecName: Full=RNA pol... 214 3e-54 tr|A0PQQ3|A0PQQ3_MYCUA Tax_Id=362242 (sigC)RecName: Full=RNA pol... 214 3e-54 sp|P66809|RPSC_MYCTU Tax_Id=1773 (sigC)RecName: Full=Probable RN... 179 1e-43 sp|P66810|RPSC_MYCBO Tax_Id=1765 (sigC)RecName: Full=Probable RN... 179 1e-43 tr|C6DPZ7|C6DPZ7_MYCTK Tax_Id=478434 RecName: Full=RNA polymeras... 179 1e-43 tr|C1APY8|C1APY8_MYCBT Tax_Id=561275 (sigC)RecName: Full=RNA pol... 179 1e-43 tr|A5U494|A5U494_MYCTA Tax_Id=419947 (sigC)RecName: Full=RNA pol... 179 1e-43 tr|A1KKB5|A1KKB5_MYCBP Tax_Id=410289 (sigC)RecName: Full=RNA pol... 179 1e-43 tr|A5WP47|A5WP47_MYCTF Tax_Id=336982 RecName: Full=RNA polymeras... 179 1e-43 tr|A4KIK6|A4KIK6_MYCTU Tax_Id=395095 RecName: Full=RNA polymeras... 179 1e-43 tr|A2VJH5|A2VJH5_MYCTU Tax_Id=348776 RecName: Full=RNA polymeras... 179 1e-43 tr|A0QFD5|A0QFD5_MYCA1 Tax_Id=243243 RecName: Full=RNA polymeras... 177 5e-43 tr|Q73YY9|Q73YY9_MYCPA Tax_Id=1770 SubName: Full=Putative unchar... 176 1e-42 tr|Q9CC01|Q9CC01_MYCLE Tax_Id=1769 RecName: Full=RNA polymerase ... 166 1e-39 tr|B8ZRM6|B8ZRM6_MYCLB Tax_Id=561304 RecName: Full=RNA polymeras... 166 1e-39 tr|B1ME35|B1ME35_MYCA9 Tax_Id=561007 RecName: Full=RNA polymeras... 139 1e-31 tr|B2HKM8|B2HKM8_MYCMM Tax_Id=216594 (sigC_1)RecName: Full=RNA p... 120 5e-26 tr|A0PWN1|A0PWN1_MYCUA Tax_Id=362242 (sigC_1)RecName: Full=RNA p... 120 5e-26 tr|C6WP37|C6WP37_ACTMD Tax_Id=446462 SubName: Full=RNA polymeras... 115 2e-24 tr|A4FP16|A4FP16_SACEN Tax_Id=405948 (sigC)RecName: Full=RNA pol... 114 6e-24 tr|A4X831|A4X831_SALTO Tax_Id=369723 RecName: Full=RNA polymeras... 103 9e-21 tr|C4RBD5|C4RBD5_9ACTO Tax_Id=219305 SubName: Full=Sigma-70 regi... 100 6e-20 tr|A8M5Q2|A8M5Q2_SALAI Tax_Id=391037 RecName: Full=RNA polymeras... 100 1e-19 tr|B1W4P0|B1W4P0_STRGG Tax_Id=455632 RecName: Full=RNA polymeras... 97 1e-18 tr|B5HT54|B5HT54_9ACTO Tax_Id=463191 RecName: Full=RNA polymeras... 97 1e-18 tr|C9Z3X6|C9Z3X6_STRSW Tax_Id=680198 SubName: Full=Putative sigm... 95 3e-18 tr|C9N8C8|C9N8C8_9ACTO Tax_Id=591167 SubName: Full=RNA polymeras... 95 3e-18 tr|C0WHW8|C0WHW8_9CORY Tax_Id=525260 SubName: Full=ECF family DN... 95 3e-18 tr|C6R7L0|C6R7L0_9CORY Tax_Id=553206 SubName: Full=RNA polymeras... 94 5e-18 tr|C2BKS5|C2BKS5_9CORY Tax_Id=525264 SubName: Full=RNA polymeras... 94 5e-18 tr|C4ERJ2|C4ERJ2_STRRS Tax_Id=479432 RecName: Full=RNA polymeras... 94 7e-18 tr|C4DT70|C4DT70_9ACTO Tax_Id=446470 RecName: Full=RNA polymeras... 94 7e-18 tr|C0U6T9|C0U6T9_9ACTO Tax_Id=526225 RecName: Full=RNA polymeras... 94 9e-18 tr|A3KIE8|A3KIE8_STRAM Tax_Id=278992 RecName: Full=RNA polymeras... 93 1e-17 tr|Q8FTZ9|Q8FTZ9_COREF Tax_Id=152794 SubName: Full=Putative RNA ... 92 2e-17 tr|C4LGM1|C4LGM1_CORK4 Tax_Id=645127 (sigC)RecName: Full=RNA pol... 92 2e-17 tr|C8NR78|C8NR78_COREF Tax_Id=196164 (sigC)SubName: Full=RNA pol... 92 2e-17 tr|Q9RCU5|Q9RCU5_STRCO Tax_Id=1902 SubName: Full=Probable ECF-fa... 92 3e-17 tr|C2GJD6|C2GJD6_9CORY Tax_Id=548478 SubName: Full=RNA polymeras... 92 3e-17 tr|C0VRJ6|C0VRJ6_9CORY Tax_Id=548477 SubName: Full=RNA polymeras... 92 3e-17 tr|B5GY45|B5GY45_STRCL Tax_Id=443255 RecName: Full=RNA polymeras... 91 4e-17 tr|C3PJS1|C3PJS1_CORA7 Tax_Id=548476 (sigC)SubName: Full=ECF-fam... 91 7e-17 tr|C2CS81|C2CS81_CORST Tax_Id=525268 SubName: Full=ECF family DN... 89 3e-16 tr|Q82PK4|Q82PK4_STRAW Tax_Id=33903 (sig10)RecName: Full=RNA pol... 88 5e-16 tr|Q6NJW3|Q6NJW3_CORDI Tax_Id=1717 (sigC)SubName: Full=Putative ... 87 8e-16 tr|C5VA02|C5VA02_9CORY Tax_Id=553207 SubName: Full=RNA polymeras... 87 1e-15 tr|C0XU56|C0XU56_9CORY Tax_Id=525263 SubName: Full=RNA polymeras... 87 1e-15 tr|C0DZR3|C0DZR3_9CORY Tax_Id=566549 SubName: Full=Putative unch... 87 1e-15 tr|Q82QA6|Q82QA6_STRAW Tax_Id=33903 (sig5)RecName: Full=RNA poly... 86 1e-15 tr|Q848B1|Q848B1_STRHY Tax_Id=1912 (gdnS)SubName: Full=Putative ... 86 1e-15 >tr|B2HFS4|B2HFS4_MYCMM Tax_Id=216594 (sigC)RecName: Full=RNA polymerase sigma factor;[Mycobacterium marinum] Length = 184 Score = 214 bits (545), Expect = 3e-54 Identities = 116/164 (70%), Positives = 116/164 (70%) Query: 1 MTTSPXXXXXXXXXXXXXXXXXXXXXXXIKATQQDVWRFVAYLSDAGSADDLTQETFLXX 60 MTTSP IKATQQDVWRFVAYLSDAGSADDLTQETFL Sbjct: 1 MTTSPDDEAVTALALAAADGDARAFEAFIKATQQDVWRFVAYLSDAGSADDLTQETFLRA 60 Query: 61 XXXXXXXXXXXXXXTWLLAIARRVVADHIRHLQARPRAAHGVDPELLLDRGRRARGFEDL 120 TWLLAIARRVVADHIRHLQARPRAAHGVDPELLLDRGRRARGFEDL Sbjct: 61 IGAIRRFGGRSSARTWLLAIARRVVADHIRHLQARPRAAHGVDPELLLDRGRRARGFEDL 120 Query: 121 VEVTTMIAQLTSDQREAXXXXXXXXXSYTDAAAVCGCPVGTIRS 164 VEVTTMIAQLTSDQREA SYTDAAAVCGCPVGTIRS Sbjct: 121 VEVTTMIAQLTSDQREALLLTQLLGLSYTDAAAVCGCPVGTIRS 164 >tr|A0PQQ3|A0PQQ3_MYCUA Tax_Id=362242 (sigC)RecName: Full=RNA polymerase sigma factor;[Mycobacterium ulcerans] Length = 186 Score = 214 bits (545), Expect = 3e-54 Identities = 116/164 (70%), Positives = 116/164 (70%) Query: 1 MTTSPXXXXXXXXXXXXXXXXXXXXXXXIKATQQDVWRFVAYLSDAGSADDLTQETFLXX 60 MTTSP IKATQQDVWRFVAYLSDAGSADDLTQETFL Sbjct: 3 MTTSPDDEAVTALALAAADGDARAFEAFIKATQQDVWRFVAYLSDAGSADDLTQETFLRA 62 Query: 61 XXXXXXXXXXXXXXTWLLAIARRVVADHIRHLQARPRAAHGVDPELLLDRGRRARGFEDL 120 TWLLAIARRVVADHIRHLQARPRAAHGVDPELLLDRGRRARGFEDL Sbjct: 63 IGAIRRFGGRSSARTWLLAIARRVVADHIRHLQARPRAAHGVDPELLLDRGRRARGFEDL 122 Query: 121 VEVTTMIAQLTSDQREAXXXXXXXXXSYTDAAAVCGCPVGTIRS 164 VEVTTMIAQLTSDQREA SYTDAAAVCGCPVGTIRS Sbjct: 123 VEVTTMIAQLTSDQREALLLTQLLGLSYTDAAAVCGCPVGTIRS 166 >sp|P66809|RPSC_MYCTU Tax_Id=1773 (sigC)RecName: Full=Probable RNA polymerase sigma-C factor;[Mycobacterium tuberculosis] Length = 185 Score = 179 bits (454), Expect = 1e-43 Identities = 93/136 (68%), Positives = 98/136 (72%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQQDVWRFVAYLSD GSADDLTQETFL TWLLAIAR VVADH Sbjct: 30 IKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARHVVADH 89 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRH+++RPR G PE L+D R ARGFEDLVEVTTMIA LT+DQREA SY Sbjct: 90 IRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVTTMIADLTTDQREALLLTQLLGLSY 149 Query: 149 TDAAAVCGCPVGTIRS 164 DAAAVCGCPVGTIRS Sbjct: 150 ADAAAVCGCPVGTIRS 165 >sp|P66810|RPSC_MYCBO Tax_Id=1765 (sigC)RecName: Full=Probable RNA polymerase sigma-C factor;[Mycobacterium bovis] Length = 185 Score = 179 bits (454), Expect = 1e-43 Identities = 93/136 (68%), Positives = 98/136 (72%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQQDVWRFVAYLSD GSADDLTQETFL TWLLAIAR VVADH Sbjct: 30 IKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARHVVADH 89 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRH+++RPR G PE L+D R ARGFEDLVEVTTMIA LT+DQREA SY Sbjct: 90 IRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVTTMIADLTTDQREALLLTQLLGLSY 149 Query: 149 TDAAAVCGCPVGTIRS 164 DAAAVCGCPVGTIRS Sbjct: 150 ADAAAVCGCPVGTIRS 165 >tr|C6DPZ7|C6DPZ7_MYCTK Tax_Id=478434 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 311 Score = 179 bits (454), Expect = 1e-43 Identities = 93/136 (68%), Positives = 98/136 (72%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQQDVWRFVAYLSD GSADDLTQETFL TWLLAIAR VVADH Sbjct: 156 IKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARHVVADH 215 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRH+++RPR G PE L+D R ARGFEDLVEVTTMIA LT+DQREA SY Sbjct: 216 IRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVTTMIADLTTDQREALLLTQLLGLSY 275 Query: 149 TDAAAVCGCPVGTIRS 164 DAAAVCGCPVGTIRS Sbjct: 276 ADAAAVCGCPVGTIRS 291 >tr|C1APY8|C1APY8_MYCBT Tax_Id=561275 (sigC)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 185 Score = 179 bits (454), Expect = 1e-43 Identities = 93/136 (68%), Positives = 98/136 (72%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQQDVWRFVAYLSD GSADDLTQETFL TWLLAIAR VVADH Sbjct: 30 IKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARHVVADH 89 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRH+++RPR G PE L+D R ARGFEDLVEVTTMIA LT+DQREA SY Sbjct: 90 IRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVTTMIADLTTDQREALLLTQLLGLSY 149 Query: 149 TDAAAVCGCPVGTIRS 164 DAAAVCGCPVGTIRS Sbjct: 150 ADAAAVCGCPVGTIRS 165 >tr|A5U494|A5U494_MYCTA Tax_Id=419947 (sigC)RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 185 Score = 179 bits (454), Expect = 1e-43 Identities = 93/136 (68%), Positives = 98/136 (72%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQQDVWRFVAYLSD GSADDLTQETFL TWLLAIAR VVADH Sbjct: 30 IKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARHVVADH 89 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRH+++RPR G PE L+D R ARGFEDLVEVTTMIA LT+DQREA SY Sbjct: 90 IRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVTTMIADLTTDQREALLLTQLLGLSY 149 Query: 149 TDAAAVCGCPVGTIRS 164 DAAAVCGCPVGTIRS Sbjct: 150 ADAAAVCGCPVGTIRS 165 >tr|A1KKB5|A1KKB5_MYCBP Tax_Id=410289 (sigC)RecName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 185 Score = 179 bits (454), Expect = 1e-43 Identities = 93/136 (68%), Positives = 98/136 (72%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQQDVWRFVAYLSD GSADDLTQETFL TWLLAIAR VVADH Sbjct: 30 IKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARHVVADH 89 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRH+++RPR G PE L+D R ARGFEDLVEVTTMIA LT+DQREA SY Sbjct: 90 IRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVTTMIADLTTDQREALLLTQLLGLSY 149 Query: 149 TDAAAVCGCPVGTIRS 164 DAAAVCGCPVGTIRS Sbjct: 150 ADAAAVCGCPVGTIRS 165 >tr|A5WP47|A5WP47_MYCTF Tax_Id=336982 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis] Length = 311 Score = 179 bits (454), Expect = 1e-43 Identities = 93/136 (68%), Positives = 98/136 (72%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQQDVWRFVAYLSD GSADDLTQETFL TWLLAIAR VVADH Sbjct: 156 IKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARHVVADH 215 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRH+++RPR G PE L+D R ARGFEDLVEVTTMIA LT+DQREA SY Sbjct: 216 IRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVTTMIADLTTDQREALLLTQLLGLSY 275 Query: 149 TDAAAVCGCPVGTIRS 164 DAAAVCGCPVGTIRS Sbjct: 276 ADAAAVCGCPVGTIRS 291 >tr|A4KIK6|A4KIK6_MYCTU Tax_Id=395095 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis str. Haarlem] Length = 222 Score = 179 bits (454), Expect = 1e-43 Identities = 93/136 (68%), Positives = 98/136 (72%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQQDVWRFVAYLSD GSADDLTQETFL TWLLAIAR VVADH Sbjct: 67 IKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARHVVADH 126 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRH+++RPR G PE L+D R ARGFEDLVEVTTMIA LT+DQREA SY Sbjct: 127 IRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVTTMIADLTTDQREALLLTQLLGLSY 186 Query: 149 TDAAAVCGCPVGTIRS 164 DAAAVCGCPVGTIRS Sbjct: 187 ADAAAVCGCPVGTIRS 202 >tr|A2VJH5|A2VJH5_MYCTU Tax_Id=348776 RecName: Full=RNA polymerase sigma factor;[Mycobacterium tuberculosis C] Length = 222 Score = 179 bits (454), Expect = 1e-43 Identities = 93/136 (68%), Positives = 98/136 (72%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQQDVWRFVAYLSD GSADDLTQETFL TWLLAIAR VVADH Sbjct: 67 IKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARHVVADH 126 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRH+++RPR G PE L+D R ARGFEDLVEVTTMIA LT+DQREA SY Sbjct: 127 IRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVTTMIADLTTDQREALLLTQLLGLSY 186 Query: 149 TDAAAVCGCPVGTIRS 164 DAAAVCGCPVGTIRS Sbjct: 187 ADAAAVCGCPVGTIRS 202 >tr|A0QFD5|A0QFD5_MYCA1 Tax_Id=243243 RecName: Full=RNA polymerase sigma factor;[Mycobacterium avium] Length = 401 Score = 177 bits (449), Expect = 5e-43 Identities = 94/136 (69%), Positives = 98/136 (72%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQQDVWRFVAYL DAGSADDLTQETFL TWLL+IARRVVADH Sbjct: 246 IKATQQDVWRFVAYLCDAGSADDLTQETFLRAIGAIERFSGRSSARTWLLSIARRVVADH 305 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRHLQ+RPRAA G DPE +L R ARGFEDLVEVTTMIA L +QREA Y Sbjct: 306 IRHLQSRPRAAVGADPEHVLRTDRHARGFEDLVEVTTMIAGLNPEQREALLLTQLLGLPY 365 Query: 149 TDAAAVCGCPVGTIRS 164 DAAAVCGCPVGTIRS Sbjct: 366 ADAAAVCGCPVGTIRS 381 >tr|Q73YY9|Q73YY9_MYCPA Tax_Id=1770 SubName: Full=Putative uncharacterized protein;[Mycobacterium paratuberculosis] Length = 459 Score = 176 bits (445), Expect = 1e-42 Identities = 93/136 (68%), Positives = 97/136 (71%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQQDVWRFVAYL DAGSADDL QETFL TWLL+IARRVVADH Sbjct: 304 IKATQQDVWRFVAYLCDAGSADDLPQETFLRAIGAIERFSGRSSARTWLLSIARRVVADH 363 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRHLQ+RPRAA G DPE +L R ARGFEDLVEVTTMIA L +QREA Y Sbjct: 364 IRHLQSRPRAAVGADPEHVLRTDRHARGFEDLVEVTTMIASLNPEQREALLLTQLLGLPY 423 Query: 149 TDAAAVCGCPVGTIRS 164 DAAAVCGCPVGTIRS Sbjct: 424 ADAAAVCGCPVGTIRS 439 >tr|Q9CC01|Q9CC01_MYCLE Tax_Id=1769 RecName: Full=RNA polymerase sigma factor;[Mycobacterium leprae] Length = 184 Score = 166 bits (420), Expect = 1e-39 Identities = 88/136 (64%), Positives = 93/136 (68%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQQDVWRFVAYLSD G+ADDLTQETFL TWLLAIARRVVADH Sbjct: 29 IKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIERFSGHSSGRTWLLAIARRVVADH 88 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IR Q RPR PE +L+ R ARGFEDLVEVTTMIA L ++QREA Y Sbjct: 89 IRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEVTTMIANLATEQREALLLTQLLGLPY 148 Query: 149 TDAAAVCGCPVGTIRS 164 DAAAVCGCPVGTIRS Sbjct: 149 ADAAAVCGCPVGTIRS 164 >tr|B8ZRM6|B8ZRM6_MYCLB Tax_Id=561304 RecName: Full=RNA polymerase sigma factor;[Mycobacterium leprae] Length = 184 Score = 166 bits (420), Expect = 1e-39 Identities = 88/136 (64%), Positives = 93/136 (68%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQQDVWRFVAYLSD G+ADDLTQETFL TWLLAIARRVVADH Sbjct: 29 IKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGAIERFSGHSSGRTWLLAIARRVVADH 88 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IR Q RPR PE +L+ R ARGFEDLVEVTTMIA L ++QREA Y Sbjct: 89 IRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEVTTMIANLATEQREALLLTQLLGLPY 148 Query: 149 TDAAAVCGCPVGTIRS 164 DAAAVCGCPVGTIRS Sbjct: 149 ADAAAVCGCPVGTIRS 164 >tr|B1ME35|B1ME35_MYCA9 Tax_Id=561007 RecName: Full=RNA polymerase sigma factor;[Mycobacterium abscessus] Length = 183 Score = 139 bits (350), Expect = 1e-31 Identities = 74/136 (54%), Positives = 89/136 (65%), Gaps = 1/136 (0%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 +KATQ DVWRFVAYL+D+G ADDLTQET+L TWLL+IARRVVADH Sbjct: 29 VKATQGDVWRFVAYLADSGVADDLTQETYLRALGALPRFAGRSTVRTWLLSIARRVVADH 88 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRHL++RPR AHG D E R R FE+LVE+ +++A L D+REA SY Sbjct: 89 IRHLKSRPRIAHGADLEEASLR-RPTHRFEELVELKSLLAALDDDRREALVLTQVVGLSY 147 Query: 149 TDAAAVCGCPVGTIRS 164 + A VCGC +GTIRS Sbjct: 148 AETADVCGCAIGTIRS 163 >tr|B2HKM8|B2HKM8_MYCMM Tax_Id=216594 (sigC_1)RecName: Full=RNA polymerase sigma factor;[Mycobacterium marinum] Length = 184 Score = 120 bits (302), Expect = 5e-26 Identities = 65/136 (47%), Positives = 79/136 (58%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 I+ATQ+DVWR VAYLSD ADDLTQETFL TWL +IARRVV D Sbjct: 29 IEATQRDVWRLVAYLSDPACADDLTQETFLRAIGALPRFAGRSNARTWLFSIARRVVVDQ 88 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IR+ RPR A+ D L + RR FED+VE+ ++ L +REA SY Sbjct: 89 IRYKTRRPRPAYVADLGEALGQARRGSRFEDIVEIRLLLDGLDEKRREALIFTQVLGLSY 148 Query: 149 TDAAAVCGCPVGTIRS 164 +AA +CG P+GTIRS Sbjct: 149 AEAAQICGSPIGTIRS 164 >tr|A0PWN1|A0PWN1_MYCUA Tax_Id=362242 (sigC_1)RecName: Full=RNA polymerase sigma factor;[Mycobacterium ulcerans] Length = 184 Score = 120 bits (302), Expect = 5e-26 Identities = 65/136 (47%), Positives = 79/136 (58%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 I+ATQ+DVWR VAYLSD ADDLTQETFL TWL +IARRVV D Sbjct: 29 IEATQRDVWRLVAYLSDPACADDLTQETFLRAIGALPRFAGRSNARTWLFSIARRVVVDQ 88 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IR+ RPR A+ D L + RR FED+VE+ ++ L +REA SY Sbjct: 89 IRYKTRRPRPAYVADLGEALGQARRGSRFEDIVEIRLLLDGLDEKRREALIFTQVLGLSY 148 Query: 149 TDAAAVCGCPVGTIRS 164 +AA +CG P+GTIRS Sbjct: 149 AEAAQICGSPIGTIRS 164 >tr|C6WP37|C6WP37_ACTMD Tax_Id=446462 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Actinosynnema mirum] Length = 192 Score = 115 bits (289), Expect = 2e-24 Identities = 62/136 (45%), Positives = 77/136 (56%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 ++ TQ+DVWRF A+L+ ADDL+QET+ TWLL IARRVV D Sbjct: 35 VRGTQRDVWRFTAHLAGVDVADDLSQETYARALTSLHRFAGRSSARTWLLVIARRVVVDQ 94 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 +R Q+RPR + G D DR A GFED VE+ ++ L D+REA SY Sbjct: 95 VRMAQSRPRLSPGADWVREADRRPAATGFEDAVELNLLLDSLDQDRREALVLTQVLGLSY 154 Query: 149 TDAAAVCGCPVGTIRS 164 +AA V GCPVGTIRS Sbjct: 155 AEAADVAGCPVGTIRS 170 >tr|A4FP16|A4FP16_SACEN Tax_Id=405948 (sigC)RecName: Full=RNA polymerase sigma factor;[Saccharopolyspora erythraea] Length = 184 Score = 114 bits (284), Expect = 6e-24 Identities = 59/136 (43%), Positives = 80/136 (58%), Gaps = 2/136 (1%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 I+ATQ+DVWRFVA+L+ ADDL QET++ TWLL+IARRVV D Sbjct: 30 IRATQRDVWRFVAHLASVEQADDLAQETYVRVLRSLPRFAGRASARTWLLSIARRVVVDQ 89 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 +R+ ++RPR V+ +R A GFED+VE+ ++A L +RE SY Sbjct: 90 VRYARSRPRTTAAVEWATAAERP--APGFEDIVELNMLLAGLDEQRREVLLLTQVLGLSY 147 Query: 149 TDAAAVCGCPVGTIRS 164 + A +CGCPVGT+RS Sbjct: 148 QETADICGCPVGTVRS 163 >tr|A4X831|A4X831_SALTO Tax_Id=369723 RecName: Full=RNA polymerase sigma factor;[Salinispora tropica] Length = 216 Score = 103 bits (257), Expect = 9e-21 Identities = 60/136 (44%), Positives = 73/136 (53%), Gaps = 4/136 (2%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 I+ATQQ V RF+A L ADDLTQET+L TWL +IARRV DH Sbjct: 58 IRATQQQVRRFLAALISPAEADDLTQETYLRALRSLPSFAGRSSARTWLFSIARRVAVDH 117 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 +R +RPR D + D GF+ V + +IA L +D+REA SY Sbjct: 118 VRAATSRPRTVPMTDSHDVADES----GFDRQVALEQIIAALPTDRREAFVVTQVLGLSY 173 Query: 149 TDAAAVCGCPVGTIRS 164 +AA VCGCPVGTIRS Sbjct: 174 AEAAQVCGCPVGTIRS 189 >tr|C4RBD5|C4RBD5_9ACTO Tax_Id=219305 SubName: Full=Sigma-70 region 4 domain-containing protein;[Micromonospora sp. ATCC 39149] Length = 198 Score = 100 bits (250), Expect = 6e-20 Identities = 58/137 (42%), Positives = 74/137 (54%), Gaps = 1/137 (0%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 ++A Q VWRF+A+L+ G ADDLTQETFL TW+ +IARRV D Sbjct: 36 VRALQGPVWRFLAHLAGPGEADDLTQETFLRALRSLPGFAGRSSARTWVFSIARRVAVDQ 95 Query: 89 IRHLQARPRAAHGVDPELLLD-RGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXS 147 +R RPR A D + + G G +D V + +IA L ++REA S Sbjct: 96 VRTAVTRPRTAALPDWQAAAEGAGAAEPGADDGVVLRQLIAGLAPERREAFVATQVAGLS 155 Query: 148 YTDAAAVCGCPVGTIRS 164 Y +AA VCGCPVGTIRS Sbjct: 156 YAEAAQVCGCPVGTIRS 172 >tr|A8M5Q2|A8M5Q2_SALAI Tax_Id=391037 RecName: Full=RNA polymerase sigma factor;[Salinispora arenicola] Length = 188 Score = 99.8 bits (247), Expect = 1e-19 Identities = 58/136 (42%), Positives = 72/136 (52%), Gaps = 2/136 (1%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 ++ATQQ V RF+A L ADDL QET+L TWL +IARRV DH Sbjct: 26 VRATQQQVRRFLAALVSPVEADDLAQETYLRALRSLPSFAGRSSARTWLFSIARRVAVDH 85 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 +R +RPR D + D GF+ V + +IA L +D+REA SY Sbjct: 86 VRAATSRPRTIPMADSHDVADAD--GSGFDRQVALEQLIAALPADRREAFVVTQVLGLSY 143 Query: 149 TDAAAVCGCPVGTIRS 164 +AA VCGCPVGTIRS Sbjct: 144 AEAAEVCGCPVGTIRS 159 >tr|B1W4P0|B1W4P0_STRGG Tax_Id=455632 RecName: Full=RNA polymerase sigma factor;[Streptomyces griseus subsp. griseus] Length = 230 Score = 96.7 bits (239), Expect = 1e-18 Identities = 58/139 (41%), Positives = 74/139 (53%), Gaps = 3/139 (2%) Query: 29 IKATQQDVWRFVAYLS-DAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVAD 87 ++AT +DV RFVAYLS D ADDL QET+L TWL++IARRVV D Sbjct: 63 VRATYEDVRRFVAYLSSDVPGADDLAQETYLRAMSGLARFGGRSCARTWLMSIARRVVID 122 Query: 88 HIRHLQARPRAAHGVDPELLLDRG--RRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXX 145 R RPR A D + +R R GFE+ V V + +L +R+A Sbjct: 123 RHRAAAVRPRTADTADWQTAAERAQPRHLPGFEESVAVLDALRRLDPARRQAFVLTQLLG 182 Query: 146 XSYTDAAAVCGCPVGTIRS 164 SY +AAA GCP+GT+RS Sbjct: 183 VSYEEAAAAAGCPIGTVRS 201 >tr|B5HT54|B5HT54_9ACTO Tax_Id=463191 RecName: Full=RNA polymerase sigma factor;[Streptomyces sviceus ATCC 29083] Length = 213 Score = 96.7 bits (239), Expect = 1e-18 Identities = 55/139 (39%), Positives = 75/139 (53%), Gaps = 3/139 (2%) Query: 29 IKATQQDVWRFVAYL-SDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVAD 87 ++A DV R+V+YL +D S DDL Q+TFL TWLL+IARR V D Sbjct: 61 VRALHHDVLRYVSYLCADPQSVDDLAQDTFLRALGSLHRFEGRSSARTWLLSIARRAVID 120 Query: 88 HIRHLQARPRAAHGVDPELLLDRG--RRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXX 145 RH ARPR D + ++R R GF+D + + ++ L+ ++REA Sbjct: 121 GFRHAAARPRRYDSSDWQAAVERAQPRNVPGFDDGIALLDLLGALSDERREAFVLTQLLG 180 Query: 146 XSYTDAAAVCGCPVGTIRS 164 SY +AA V GCPVGT+RS Sbjct: 181 LSYEEAAVVSGCPVGTVRS 199 >tr|C9Z3X6|C9Z3X6_STRSW Tax_Id=680198 SubName: Full=Putative sigma factor;[Streptomyces scabies] Length = 213 Score = 95.1 bits (235), Expect = 3e-18 Identities = 57/139 (41%), Positives = 76/139 (54%), Gaps = 3/139 (2%) Query: 29 IKATQQDVWRFVAYL-SDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVAD 87 + A Q+DV RFVA+L +D + DDL Q+TFL TWLL+IARR V D Sbjct: 41 VGALQRDVRRFVAHLCADPQAVDDLAQDTFLRALGSLHRFEGRCSARTWLLSIARRAVTD 100 Query: 88 HIRHLQARPRAAHGVDPELLLDRG--RRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXX 145 R+ ARPR + D L ++ R GF+D V +T ++ L ++REA Sbjct: 101 SFRYAAARPRLSDVPDWRLAVEHAQPRGLPGFDDGVALTDLLGALPEERREAFVLTQMLG 160 Query: 146 XSYTDAAAVCGCPVGTIRS 164 SY DAA + GCPVGT+RS Sbjct: 161 LSYEDAAELAGCPVGTVRS 179 >tr|C9N8C8|C9N8C8_9ACTO Tax_Id=591167 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Streptomyces flavogriseus ATCC 33331] Length = 255 Score = 95.1 bits (235), Expect = 3e-18 Identities = 54/139 (38%), Positives = 77/139 (55%), Gaps = 3/139 (2%) Query: 29 IKATQQDVWRFVAYLS-DAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVAD 87 ++A DVWR+VA+LS + +ADDLTQ+ FL TWLL+IARR VAD Sbjct: 56 VRALHSDVWRYVAHLSGETQAADDLTQDVFLRALTGLPGFEGRSSARTWLLSIARRTVAD 115 Query: 88 HIRHLQARPRAAHGVDPELLLDRGRRAR--GFEDLVEVTTMIAQLTSDQREAXXXXXXXX 145 R ARPR A D + ++ + GF++ V + +++ + +D+REA Sbjct: 116 SFRRAAARPRLADRDDWQRAAEQAQPCGTPGFDEGVALAELLSSIQADRREAFVLTQLLG 175 Query: 146 XSYTDAAAVCGCPVGTIRS 164 Y +AA V GCPVGT+RS Sbjct: 176 IPYKEAATVIGCPVGTVRS 194 >tr|C0WHW8|C0WHW8_9CORY Tax_Id=525260 SubName: Full=ECF family DNA-directed RNA polymerase sigma subunit SigY;[Corynebacterium accolens ATCC 49725] Length = 180 Score = 95.1 bits (235), Expect = 3e-18 Identities = 53/136 (38%), Positives = 72/136 (52%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQ DVWR +A+L ADDLTQET+L TWLL++ARRV D+ Sbjct: 31 IKATQDDVWRLLAHLGGPEIADDLTQETYLRVIGALPRFAARSSARTWLLSLARRVWVDN 90 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRH ARPR + + + + + D ++ +I L +D+REA +Y Sbjct: 91 IRHDMARPRKSATQYEDAMSSAAENSGSWSDWIDARALIDALPADRREALILTQVLGYTY 150 Query: 149 TDAAAVCGCPVGTIRS 164 +AA + G VGTIRS Sbjct: 151 EEAAKIAGVRVGTIRS 166 >tr|C6R7L0|C6R7L0_9CORY Tax_Id=553206 SubName: Full=RNA polymerase sigma factor;[Corynebacterium tuberculostearicum SK141] Length = 180 Score = 94.4 bits (233), Expect = 5e-18 Identities = 53/136 (38%), Positives = 73/136 (53%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQ DVWR +A+L ADDLTQET+L TWLL++ARRV D+ Sbjct: 31 IKATQDDVWRLLAHLGGPEGADDLTQETYLRVISALPRFAARSSARTWLLSLARRVWVDN 90 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRH ARPR + + + + + + ++ T+I L +D+REA +Y Sbjct: 91 IRHDMARPRKSATEYEDAMGAAPEESAAWSEWIDARTLIDALPADRREALILTQVLGYTY 150 Query: 149 TDAAAVCGCPVGTIRS 164 +AA + G VGTIRS Sbjct: 151 EEAAKIAGVRVGTIRS 166 >tr|C2BKS5|C2BKS5_9CORY Tax_Id=525264 SubName: Full=RNA polymerase sigma factor;[Corynebacterium pseudogenitalium ATCC 33035] Length = 180 Score = 94.4 bits (233), Expect = 5e-18 Identities = 53/136 (38%), Positives = 73/136 (53%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQ DVWR +A+L ADDLTQET+L TWLL++ARRV D+ Sbjct: 31 IKATQDDVWRLLAHLGGPEGADDLTQETYLRVISALPRFAARSSARTWLLSLARRVWVDN 90 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRH ARPR + + + + + + ++ T+I L +D+REA +Y Sbjct: 91 IRHDMARPRKSATEYEDAMGAAPEESAAWSEWIDARTLIDALPADRREALILTQVLGYTY 150 Query: 149 TDAAAVCGCPVGTIRS 164 +AA + G VGTIRS Sbjct: 151 EEAAKIAGVRVGTIRS 166 >tr|C4ERJ2|C4ERJ2_STRRS Tax_Id=479432 RecName: Full=RNA polymerase sigma factor;[Streptosporangium roseum DSM 43021] Length = 240 Score = 94.0 bits (232), Expect = 7e-18 Identities = 56/137 (40%), Positives = 75/137 (54%), Gaps = 2/137 (1%) Query: 30 KATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADHI 89 +A DV RF+AYL+ + SA+DLTQETFL TWLL+IARRVV D Sbjct: 84 RAVYADVRRFIAYLAGSHSAEDLTQETFLRVLGSLPRFAGRSSARTWLLSIARRVVVDRF 143 Query: 90 RHLQARPRAAHGVDPELLLDR--GRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXS 147 R ARP A D + +R R G ED V + ++A++ ++REA Sbjct: 144 RSAAARPVVADLSDWQAAAERCQPRGLPGREDGVALADLLAKVPRERREAFVLTQLVGLP 203 Query: 148 YTDAAAVCGCPVGTIRS 164 Y +AAA+ GCP+GT+RS Sbjct: 204 YAEAAAMIGCPIGTVRS 220 >tr|C4DT70|C4DT70_9ACTO Tax_Id=446470 RecName: Full=RNA polymerase sigma factor;[Stackebrandtia nassauensis DSM 44728] Length = 247 Score = 94.0 bits (232), Expect = 7e-18 Identities = 58/137 (42%), Positives = 75/137 (54%), Gaps = 5/137 (3%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 ++ATQ +VWR A LSD +ADDL QET+L TWLL IARRV ADH Sbjct: 28 VRATQTEVWRLCAALSDVHTADDLAQETYLRALKALASFEGRSSVRTWLLGIARRVCADH 87 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDL-VEVTTMIAQLTSDQREAXXXXXXXXXS 147 +R L R R +D LL + R G + + +T ++A+L+S++R A S Sbjct: 88 VRRLVRRRR----LDARLLDNAPRTVEGDPAVSLALTDLLARLSSERRSAFVLTQVLGLS 143 Query: 148 YTDAAAVCGCPVGTIRS 164 Y DAA V PVGTIRS Sbjct: 144 YADAAVVDNVPVGTIRS 160 >tr|C0U6T9|C0U6T9_9ACTO Tax_Id=526225 RecName: Full=RNA polymerase sigma factor;[Geodermatophilus obscurus DSM 43160] Length = 182 Score = 93.6 bits (231), Expect = 9e-18 Identities = 57/137 (41%), Positives = 71/137 (51%), Gaps = 1/137 (0%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 ++ATQ DVWR A L D SADDLTQET+L TWLL+IARRV AD Sbjct: 23 VRATQSDVWRLCAALGDRQSADDLTQETYLRAFGSLHRFEGRSSLRTWLLSIARRVCADA 82 Query: 89 IRHLQARPRAAHGVDPEL-LLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXS 147 +R + R D +L L G + V ++A+L+ D+REA Sbjct: 83 VRSRRRRRLTLVREDADLEALGAGNDGDRVGEGAAVADLLARLSPDRREAFVLTQLLGLP 142 Query: 148 YTDAAAVCGCPVGTIRS 164 Y +AA V GCPVGTIRS Sbjct: 143 YAEAAEVAGCPVGTIRS 159 >tr|A3KIE8|A3KIE8_STRAM Tax_Id=278992 RecName: Full=RNA polymerase sigma factor;[Streptomyces ambofaciens ATCC 23877] Length = 213 Score = 93.2 bits (230), Expect = 1e-17 Identities = 55/139 (39%), Positives = 75/139 (53%), Gaps = 3/139 (2%) Query: 29 IKATQQDVWRFVAYL-SDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVAD 87 ++A +DV FV YL +D +ADDL Q+TFL TWLL+IARR V D Sbjct: 49 VRALHRDVRHFVTYLGADPQTADDLAQDTFLRALGSLHRFEGRSSARTWLLSIARRAVVD 108 Query: 88 HIRHLQARPRAAHGVDPELLLDRG--RRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXX 145 RH ARPR A D + + +R R GF+D + + ++A L ++REA Sbjct: 109 SYRHASARPRLADTDDWQTVAERAQERGLPGFDDGIALGELLAALPDERREAFVLTQLLG 168 Query: 146 XSYTDAAAVCGCPVGTIRS 164 Y +AAA+ CPVGT+RS Sbjct: 169 LPYAEAAALSDCPVGTVRS 187 >tr|Q8FTZ9|Q8FTZ9_COREF Tax_Id=152794 SubName: Full=Putative RNA polymerase sigma factor;[Corynebacterium efficiens] Length = 202 Score = 92.4 bits (228), Expect = 2e-17 Identities = 52/136 (38%), Positives = 74/136 (54%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 I+ TQ DVWR +A+L ADDLTQET+L TWLL++ARRV D+ Sbjct: 46 IRETQDDVWRLLAHLGGREIADDLTQETYLRVMSALPRFAARSSARTWLLSLARRVWVDN 105 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRH ARPR +H + + + + + ++V T+I L +++REA +Y Sbjct: 106 IRHDMARPRKSHVEYEDTGVTDATNSTIWSEWIDVRTLIDALPAERREALILTQVLGYTY 165 Query: 149 TDAAAVCGCPVGTIRS 164 +AA + G VGTIRS Sbjct: 166 EEAAKIAGVRVGTIRS 181 >tr|C4LGM1|C4LGM1_CORK4 Tax_Id=645127 (sigC)RecName: Full=RNA polymerase sigma factor;[Corynebacterium kroppenstedtii] Length = 228 Score = 92.4 bits (228), Expect = 2e-17 Identities = 54/141 (38%), Positives = 77/141 (54%), Gaps = 6/141 (4%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 I+ TQ+DVWR +A+L+D ADDLTQET+L TWLL++ARRV D Sbjct: 56 IRRTQKDVWRLLAHLADIDRADDLTQETYLRIISALPTFAGRSSARTWLLSVARRVWVDS 115 Query: 89 IRHLQARPRAAHGVDPELLLDR-----GRRARGFEDLVEVTTMIAQLTSDQREAXXXXXX 143 +RH ARP++ G + E + D+ + + D V+V ++ L D+REA Sbjct: 116 VRHDMARPQST-GTEWETVADQHTATNTAASSSWSDWVDVQLLMENLDPDRREALILTQV 174 Query: 144 XXXSYTDAAAVCGCPVGTIRS 164 +Y +AA + G VGTIRS Sbjct: 175 LGYTYDEAATIVGVRVGTIRS 195 >tr|C8NR78|C8NR78_COREF Tax_Id=196164 (sigC)SubName: Full=RNA polymerase sigma-70 factor, ECF subfamily;[Corynebacterium efficiens YS-314] Length = 186 Score = 92.4 bits (228), Expect = 2e-17 Identities = 52/136 (38%), Positives = 74/136 (54%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 I+ TQ DVWR +A+L ADDLTQET+L TWLL++ARRV D+ Sbjct: 30 IRETQDDVWRLLAHLGGREIADDLTQETYLRVMSALPRFAARSSARTWLLSLARRVWVDN 89 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRH ARPR +H + + + + + ++V T+I L +++REA +Y Sbjct: 90 IRHDMARPRKSHVEYEDTGVTDATNSTIWSEWIDVRTLIDALPAERREALILTQVLGYTY 149 Query: 149 TDAAAVCGCPVGTIRS 164 +AA + G VGTIRS Sbjct: 150 EEAAKIAGVRVGTIRS 165 >tr|Q9RCU5|Q9RCU5_STRCO Tax_Id=1902 SubName: Full=Probable ECF-family sigma factor;[Streptomyces coelicolor] Length = 213 Score = 92.0 bits (227), Expect = 3e-17 Identities = 56/139 (40%), Positives = 76/139 (54%), Gaps = 3/139 (2%) Query: 29 IKATQQDVWRFVAYLS-DAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVAD 87 + A +DV RFVAYLS D +ADDL Q+TFL WLL+IARR V D Sbjct: 49 VGALHRDVRRFVAYLSADPQAADDLAQDTFLRALGSLHRFEGRSSARVWLLSIARRAVID 108 Query: 88 HIRHLQARPRAAHGVDPELLLDRG--RRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXX 145 + R+ ARPR A D + +R R GFED + + +++ L +++REA Sbjct: 109 NYRYASARPRLADVDDWQDAAERAQERGLPGFEDGIALADLLSALPAERREAFVLTQLVG 168 Query: 146 XSYTDAAAVCGCPVGTIRS 164 Y +AA + GCPVGT+RS Sbjct: 169 LPYAEAAELSGCPVGTVRS 187 >tr|C2GJD6|C2GJD6_9CORY Tax_Id=548478 SubName: Full=RNA polymerase sigma factor;[Corynebacterium glucuronolyticum ATCC 51866] Length = 169 Score = 91.7 bits (226), Expect = 3e-17 Identities = 55/144 (38%), Positives = 73/144 (50%), Gaps = 19/144 (13%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IK TQ+DVWR +A+LS ADDLTQET+L TWL+ +ARRV D Sbjct: 26 IKLTQKDVWRLLAHLSSPAEADDLTQETYLRVISALPRFQGRSTAKTWLITLARRVWIDQ 85 Query: 89 IRHLQARPRAA--------HGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXX 140 IRH Q+RP+ + H PE + +LV+V ++ L ++REA Sbjct: 86 IRHEQSRPKKSSTEYEDVQHATPPE-----------WSELVDVRLLLNSLPPERREALVL 134 Query: 141 XXXXXXSYTDAAAVCGCPVGTIRS 164 SY +AA + G VGTIRS Sbjct: 135 TQVLGYSYEEAAKIAGVRVGTIRS 158 >tr|C0VRJ6|C0VRJ6_9CORY Tax_Id=548477 SubName: Full=RNA polymerase sigma factor;[Corynebacterium glucuronolyticum ATCC 51867] Length = 169 Score = 91.7 bits (226), Expect = 3e-17 Identities = 55/144 (38%), Positives = 73/144 (50%), Gaps = 19/144 (13%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IK TQ+DVWR +A+LS ADDLTQET+L TWL+ +ARRV D Sbjct: 26 IKLTQKDVWRLLAHLSSPAEADDLTQETYLRVISALPRFQGRSTAKTWLITLARRVWIDQ 85 Query: 89 IRHLQARPRAA--------HGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXX 140 IRH Q+RP+ + H PE + +LV+V ++ L ++REA Sbjct: 86 IRHEQSRPKKSSTEYEDVQHATPPE-----------WSELVDVRLLLNSLPPERREALVL 134 Query: 141 XXXXXXSYTDAAAVCGCPVGTIRS 164 SY +AA + G VGTIRS Sbjct: 135 TQVLGYSYEEAAKIAGVRVGTIRS 158 >tr|B5GY45|B5GY45_STRCL Tax_Id=443255 RecName: Full=RNA polymerase sigma factor;[Streptomyces clavuligerus ATCC 27064] Length = 215 Score = 91.3 bits (225), Expect = 4e-17 Identities = 59/139 (42%), Positives = 71/139 (51%), Gaps = 3/139 (2%) Query: 29 IKATQQDVWRFVAYLS-DAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVAD 87 ++AT DV RFV +L+ DA A+DLTQE FL +WLLAIARRVV D Sbjct: 54 VRATYDDVRRFVVHLTADARGAEDLTQEVFLRALAGISRFAGRSCARSWLLAIARRVVVD 113 Query: 88 HIRHLQARPRAAHGVDPELLLDRG--RRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXX 145 R ARPR A D DR R GFE+ V +A L +R+A Sbjct: 114 RYRRAAARPRIADTPDWLGAADRAQPRHLPGFEESVAFADAVAALEPGRRQAFVLTCVLG 173 Query: 146 XSYTDAAAVCGCPVGTIRS 164 Y +AA + GCPVGTIRS Sbjct: 174 LPYAEAARLLGCPVGTIRS 192 >tr|C3PJS1|C3PJS1_CORA7 Tax_Id=548476 (sigC)SubName: Full=ECF-family sigma factor C;[Corynebacterium aurimucosum] Length = 182 Score = 90.5 bits (223), Expect = 7e-17 Identities = 54/138 (39%), Positives = 71/138 (51%), Gaps = 2/138 (1%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IK+TQ DVWR +A+L ADDLTQET+L TWLL++ARRV D+ Sbjct: 31 IKSTQDDVWRLLAHLGGPDIADDLTQETYLRVIGALPRFAARSSARTWLLSLARRVWVDN 90 Query: 89 IRHLQARPR--AAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXX 146 IRH ARPR A D L + + + ++ +I L D+REA Sbjct: 91 IRHDMARPRKSATEYEDAAALTTTPESSGTWSEWIDARALIDALPEDRREALILTQVLGY 150 Query: 147 SYTDAAAVCGCPVGTIRS 164 +Y +AA + G VGTIRS Sbjct: 151 TYEEAAKIAGVRVGTIRS 168 >tr|C2CS81|C2CS81_CORST Tax_Id=525268 SubName: Full=ECF family DNA-directed RNA polymerase sigma subunit SigY;[Corynebacterium striatum ATCC 6940] Length = 188 Score = 88.6 bits (218), Expect = 3e-16 Identities = 54/138 (39%), Positives = 71/138 (51%), Gaps = 2/138 (1%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IK+TQ DVWR +A+L ADDLTQET+L TWLL++ARRV D+ Sbjct: 33 IKSTQDDVWRLLAHLGGPEIADDLTQETYLRVIGALPRFAARSSARTWLLSLARRVWVDN 92 Query: 89 IRHLQARPR--AAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXX 146 IRH ARPR A D + + D ++ +I L +D+REA Sbjct: 93 IRHDMARPRKSATEYEDAAAQAPVIENSGTWSDWIDARALIDALPADRREALILTQVLGY 152 Query: 147 SYTDAAAVCGCPVGTIRS 164 +Y +AA + G VGTIRS Sbjct: 153 TYEEAAKIAGVRVGTIRS 170 >tr|Q82PK4|Q82PK4_STRAW Tax_Id=33903 (sig10)RecName: Full=RNA polymerase sigma factor;[Streptomyces avermitilis] Length = 204 Score = 87.8 bits (216), Expect = 5e-16 Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 3/139 (2%) Query: 29 IKATQQDVWRFVAYLS-DAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVAD 87 ++A +DV R+VA+LS D +ADDL Q+TFL WL++IARR V D Sbjct: 42 VRALHRDVVRYVAHLSADPQAADDLAQDTFLRALGSLHRFEGRSSARAWLMSIARRAVVD 101 Query: 88 HIRHLQARPRAAHGVDPELLLDRGRRAR--GFEDLVEVTTMIAQLTSDQREAXXXXXXXX 145 RH ARPR + D +L ++ + G +D + + ++A L ++REA Sbjct: 102 SFRHAAARPRLSDIPDWQLAVELAQPCDLPGLDDGIALLDLLAVLPDERREAFVLTQLMG 161 Query: 146 XSYTDAAAVCGCPVGTIRS 164 Y +AA V GCP+GT+RS Sbjct: 162 LPYAEAAEVSGCPIGTVRS 180 >tr|Q6NJW3|Q6NJW3_CORDI Tax_Id=1717 (sigC)SubName: Full=Putative RNA polymerase sigma factor;[Corynebacterium diphtheriae] Length = 188 Score = 87.0 bits (214), Expect = 8e-16 Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 3/136 (2%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 I+ATQ DVWR +A+L ADDLTQET+L TWLL++ARRV D+ Sbjct: 32 IRATQTDVWRLLAHLGGTDIADDLTQETYLRVMSALPRFAARSSARTWLLSLARRVWVDN 91 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 IRH ARPR + E+ G + + + V+V +I L +++REA SY Sbjct: 92 IRHDMARPRKSAA---EVEQCDGTTSSLWAEWVDVRMLIDALPAERREALILTQVLGFSY 148 Query: 149 TDAAAVCGCPVGTIRS 164 +AA + +GTIRS Sbjct: 149 EEAAKIADVRIGTIRS 164 >tr|C5VA02|C5VA02_9CORY Tax_Id=553207 SubName: Full=RNA polymerase sigma factor;[Corynebacterium matruchotii ATCC 14266] Length = 188 Score = 86.7 bits (213), Expect = 1e-15 Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQ DVWR +A+L ADDLTQET+L TWLL++ARRV AD Sbjct: 26 IKATQSDVWRLLAHLGGTDRADDLTQETYLRVMGALPRFAARSSAMTWLLSLARRVWADS 85 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 +R+ +ARPR + + E + + + V+V +I L +++REA SY Sbjct: 86 MRYDRARPRKS-AAEVESVAALRVPESSWSEWVDVRMLIDALPAERREALILTQVLGYSY 144 Query: 149 TDAAAVCGCPVGTIRS 164 +AA + VGTIRS Sbjct: 145 EEAAKIADVRVGTIRS 160 >tr|C0XU56|C0XU56_9CORY Tax_Id=525263 SubName: Full=RNA polymerase sigma factor;[Corynebacterium lipophiloflavum DSM 44291] Length = 215 Score = 86.7 bits (213), Expect = 1e-15 Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 2/138 (1%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 I+ATQ DVWRF+A+L+ ADDLTQET+L TWLL +ARRV D Sbjct: 65 IEATQGDVWRFLAHLAGREQADDLTQETYLRVLGALPRFAARSSARTWLLTLARRVWIDS 124 Query: 89 IRHLQARPRAAHGVDPELLLDRGR--RARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXX 146 IRH ARPR + ++ + + ++++ T++ L +++REA Sbjct: 125 IRHDLARPRKSITQYDDVAAQKPSPDNPNTWSEVIDARTLLDALPAERREAIVLTQVLGY 184 Query: 147 SYTDAAAVCGCPVGTIRS 164 +Y +AA + G +GTIRS Sbjct: 185 TYEEAARIAGVRIGTIRS 202 >tr|C0DZR3|C0DZR3_9CORY Tax_Id=566549 SubName: Full=Putative uncharacterized protein;[Corynebacterium matruchotii ATCC 33806] Length = 188 Score = 86.7 bits (213), Expect = 1e-15 Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 1/136 (0%) Query: 29 IKATQQDVWRFVAYLSDAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVADH 88 IKATQ DVWR +A+L ADDLTQET+L TWLL++ARRV AD Sbjct: 26 IKATQSDVWRLLAHLGGTDRADDLTQETYLRVMGALPRFAARSSAMTWLLSLARRVWADS 85 Query: 89 IRHLQARPRAAHGVDPELLLDRGRRARGFEDLVEVTTMIAQLTSDQREAXXXXXXXXXSY 148 +R+ +ARPR + + E + + + V+V +I L +++REA SY Sbjct: 86 MRYDRARPRKS-AAEVESVAALRVPESSWSEWVDVRMLIDALPAERREALILTQVLGYSY 144 Query: 149 TDAAAVCGCPVGTIRS 164 +AA + VGTIRS Sbjct: 145 EEAAKIADVRVGTIRS 160 >tr|Q82QA6|Q82QA6_STRAW Tax_Id=33903 (sig5)RecName: Full=RNA polymerase sigma factor;[Streptomyces avermitilis] Length = 217 Score = 86.3 bits (212), Expect = 1e-15 Identities = 53/139 (38%), Positives = 74/139 (53%), Gaps = 3/139 (2%) Query: 29 IKATQQDVWRFVAYLS-DAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVAD 87 ++A DV R++ +LS D ADDL Q+TFL TWLL+IARR V D Sbjct: 52 VRALHPDVVRYITHLSSDRQLADDLAQDTFLRALGSLHRFEGRSSARTWLLSIARRTVID 111 Query: 88 HIRHLQARPRAAHGVDPELLLDRGRRAR--GFEDLVEVTTMIAQLTSDQREAXXXXXXXX 145 ++R+ ARPR D + +R + + GFED V + ++ L +++REA Sbjct: 112 NVRYTAARPRLRDTDDWTVWAERAQPSGLPGFEDGVALLDLLDALPAERREAFVLTQLTG 171 Query: 146 XSYTDAAAVCGCPVGTIRS 164 Y +AA GCPVGTIRS Sbjct: 172 LPYEEAAEASGCPVGTIRS 190 >tr|Q848B1|Q848B1_STRHY Tax_Id=1912 (gdnS)SubName: Full=Putative ECF-family sigma factor;[Streptomyces hygroscopicus] Length = 210 Score = 86.3 bits (212), Expect = 1e-15 Identities = 54/139 (38%), Positives = 71/139 (51%), Gaps = 3/139 (2%) Query: 29 IKATQQDVWRFVAYLS-DAGSADDLTQETFLXXXXXXXXXXXXXXXXTWLLAIARRVVAD 87 I+AT +DV RFV +LS D +DL QET+L TWLL+IARRVV D Sbjct: 45 IRATYRDVRRFVLHLSADPHGCEDLAQETYLRALTGLPRFAGRSSARTWLLSIARRVVVD 104 Query: 88 HIRHLQARPRAAHGVDPELLLDRGRRAR--GFEDLVEVTTMIAQLTSDQREAXXXXXXXX 145 R ARPR D + +R + A GF++ V + ++A L +RE Sbjct: 105 RYRTAAARPRTLDADDWQEAAERAQPAGLPGFDEGVALMDLLAALAPARREMFLLTKVLG 164 Query: 146 XSYTDAAAVCGCPVGTIRS 164 Y DAA GCP+GT+RS Sbjct: 165 LPYADAATATGCPIGTVRS 183 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.322 0.132 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 742,884,276 Number of extensions: 19027519 Number of successful extensions: 36742 Number of sequences better than 10.0: 1486 Number of HSP's gapped: 37260 Number of HSP's successfully gapped: 1486 Length of query: 184 Length of database: 3,846,993,858 Length adjustment: 129 Effective length of query: 55 Effective length of database: 2,392,492,671 Effective search space: 131587096905 Effective search space used: 131587096905 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 76 (33.9 bits)