BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_3736 (291 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HMD2|B2HMD2_MYCMM Tax_Id=216594 (comEA)SubName: Full=Conser... 352 4e-95 tr|A0PTZ0|A0PTZ0_MYCUA Tax_Id=362242 (comEA)SubName: Full=Conser... 337 1e-90 tr|Q7TYM5|Q7TYM5_MYCBO Tax_Id=1765 SubName: Full=Putative unchar... 243 2e-62 tr|C1AQY0|C1AQY0_MYCBT Tax_Id=561275 SubName: Full=Putative unch... 243 2e-62 tr|A1KLA7|A1KLA7_MYCBP Tax_Id=410289 SubName: Full=Putative unch... 243 2e-62 tr|P71728|P71728_MYCTU Tax_Id=1773 SubName: Full=Putative unchar... 241 9e-62 tr|A5U5B0|A5U5B0_MYCTA Tax_Id=419947 SubName: Full=Putative unch... 241 9e-62 tr|A5WQ31|A5WQ31_MYCTF Tax_Id=336982 SubName: Full=Putative unch... 241 9e-62 tr|A4KJG4|A4KJG4_MYCTU Tax_Id=395095 SubName: Full=Putative unch... 241 9e-62 tr|A2VKE1|A2VKE1_MYCTU Tax_Id=348776 SubName: Full=Putative unch... 241 9e-62 tr|C6DN68|C6DN68_MYCTK Tax_Id=478434 SubName: Full=Putative unch... 236 2e-60 tr|A0QDK4|A0QDK4_MYCA1 Tax_Id=243243 SubName: Full=Competence pr... 234 7e-60 tr|Q73XT3|Q73XT3_MYCPA Tax_Id=1770 SubName: Full=Putative unchar... 230 2e-58 tr|A0R105|A0R105_MYCS2 Tax_Id=246196 SubName: Full=DNA-binding p... 199 3e-49 tr|A1TBZ2|A1TBZ2_MYCVP Tax_Id=350058 SubName: Full=Competence pr... 196 2e-48 tr|A4T2G7|A4T2G7_MYCGI Tax_Id=350054 SubName: Full=Competence pr... 195 6e-48 tr|Q1B657|Q1B657_MYCSS Tax_Id=164756 SubName: Full=Competence pr... 189 2e-46 tr|A3Q2C5|A3Q2C5_MYCSJ Tax_Id=164757 SubName: Full=Competence pr... 189 2e-46 tr|A1UIX9|A1UIX9_MYCSK Tax_Id=189918 SubName: Full=Competence pr... 189 2e-46 tr|Q7D766|Q7D766_MYCTU Tax_Id=1773 SubName: Full=ComE operon pro... 185 5e-45 tr|B1MMZ9|B1MMZ9_MYCA9 Tax_Id=561007 SubName: Full=Putative unch... 150 2e-34 tr|C1A1J4|C1A1J4_RHOE4 Tax_Id=234621 SubName: Full=Putative DNA-... 125 4e-27 tr|C3JRX5|C3JRX5_RHOER Tax_Id=596309 SubName: Full=DNA-binding p... 125 6e-27 tr|Q5Z014|Q5Z014_NOCFA Tax_Id=37329 SubName: Full=Putative DNA-b... 123 2e-26 tr|D0LC07|D0LC07_GORB4 Tax_Id=526226 SubName: Full=Competence pr... 122 5e-26 tr|C1AUQ3|C1AUQ3_RHOOB Tax_Id=632772 SubName: Full=Putative DNA-... 122 6e-26 tr|Q0SH70|Q0SH70_RHOSR Tax_Id=101510 SubName: Full=Putative unch... 114 1e-23 tr|C6WRA2|C6WRA2_ACTMD Tax_Id=446462 SubName: Full=Competence pr... 110 2e-22 tr|A4F9N2|A4F9N2_SACEN Tax_Id=405948 SubName: Full=Competence pr... 106 4e-21 tr|D1AA93|D1AA93_THECU Tax_Id=471852 SubName: Full=Competence pr... 100 3e-19 tr|C2AU83|C2AU83_TSUPA Tax_Id=521096 SubName: Full=Competence pr... 100 3e-19 tr|A0LSY6|A0LSY6_ACIC1 Tax_Id=351607 SubName: Full=Helix-hairpin... 98 1e-18 tr|A5CR90|A5CR90_CLAM3 Tax_Id=443906 SubName: Full=Putative unch... 97 2e-18 tr|A8KYV2|A8KYV2_FRASN Tax_Id=298653 SubName: Full=Helix-hairpin... 96 4e-18 tr|C5C480|C5C480_BEUC1 Tax_Id=471853 SubName: Full=Competence pr... 96 6e-18 tr|B0RDA4|B0RDA4_CLAMS Tax_Id=31964 SubName: Full=Putative DNA-b... 96 6e-18 tr|C8XF30|C8XF30_NAKMY Tax_Id=479431 SubName: Full=Competence pr... 95 8e-18 tr|C7MPR3|C7MPR3_SACVD Tax_Id=471857 SubName: Full=DNA uptake pr... 95 1e-17 tr|Q82C63|Q82C63_STRAW Tax_Id=33903 (comEA)SubName: Full=Putativ... 91 2e-16 tr|B1VY20|B1VY20_STRGG Tax_Id=455632 SubName: Full=Putative DNA-... 90 3e-16 tr|C1WVK9|C1WVK9_9ACTO Tax_Id=479435 SubName: Full=Competence pr... 90 3e-16 tr|Q9RDL8|Q9RDL8_STRCO Tax_Id=1902 SubName: Full=Putative DNA-bi... 89 5e-16 tr|C9Z7J6|C9Z7J6_STRSW Tax_Id=680198 SubName: Full=Putative memb... 89 5e-16 tr|A1SHW1|A1SHW1_NOCSJ Tax_Id=196162 SubName: Full=Competence pr... 88 1e-15 tr|B5H760|B5H760_STRPR Tax_Id=457429 SubName: Full=DNA-binding p... 88 1e-15 tr|Q2JDK7|Q2JDK7_FRASC Tax_Id=106370 SubName: Full=Helix-hairpin... 88 1e-15 tr|D1BUZ0|D1BUZ0_9MICO Tax_Id=446471 SubName: Full=Competence pr... 88 1e-15 tr|C4E8E2|C4E8E2_STRRS Tax_Id=479432 SubName: Full=DNA uptake pr... 87 2e-15 tr|B5HXE1|B5HXE1_9ACTO Tax_Id=463191 SubName: Full=DNA-binding p... 87 2e-15 tr|C4RNW4|C4RNW4_9ACTO Tax_Id=219305 SubName: Full=Competence pr... 86 4e-15 >tr|B2HMD2|B2HMD2_MYCMM Tax_Id=216594 (comEA)SubName: Full=Conserved hypothetical membrane protein ComEA;[Mycobacterium marinum] Length = 291 Score = 352 bits (902), Expect = 4e-95 Identities = 198/291 (68%), Positives = 198/291 (68%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAESGAXXXXXXXXXXNSLLPRWLPEAGDGSGL 60 MRTELPAERLQRRLSTAPDLRLHAESGAAESGA NSLLPRWLPEAGDGSGL Sbjct: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAESGADPHDDRDDDPNSLLPRWLPEAGDGSGL 60 Query: 61 LSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXXXXXXXXX 120 LSRVRADPGR RDRPAPVMSAKLPAVEHV Sbjct: 61 LSRVRADPGRAGAIALAVVAALAVLVTAFTLLRDRPAPVMSAKLPAVEHVSGSSGASPGS 120 Query: 121 XXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQ 180 DRPVVVSVVGLVHTPGLFTLAP TIGLNMARQ Sbjct: 121 SASPAAAAGPDRPVVVSVVGLVHTPGLFTLAPGARVADALQAAGGALAGADTIGLNMARQ 180 Query: 181 LADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQ 240 LADGEQIVVGLAPVAGQPKRF GPNPAEVLDLNTATVEQ Sbjct: 181 LADGEQIVVGLAPVAGQPKRFGSSIGAATPSPAPAATSGTRSPGPNPAEVLDLNTATVEQ 240 Query: 241 LDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 LDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV Sbjct: 241 LDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 >tr|A0PTZ0|A0PTZ0_MYCUA Tax_Id=362242 (comEA)SubName: Full=Conserved hypothetical membrane protein ComEA;[Mycobacterium ulcerans] Length = 291 Score = 337 bits (863), Expect = 1e-90 Identities = 192/291 (65%), Positives = 193/291 (66%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAESGAXXXXXXXXXXNSLLPRWLPEAGDGSGL 60 MRTELPAERLQRRL+TAPDLRLHAESGAAESGA NSLLPRWL EAGDGSGL Sbjct: 1 MRTELPAERLQRRLTTAPDLRLHAESGAAESGADPHDDRDDDPNSLLPRWLSEAGDGSGL 60 Query: 61 LSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXXXXXXXXX 120 LSRVRADPGR DRPAPVMSAKLPAVEHV Sbjct: 61 LSRVRADPGRAGAIALAVVAALAVLVTAFTLLHDRPAPVMSAKLPAVEHVSGSSGASPGS 120 Query: 121 XXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQ 180 DRPVVVSVVGLVHT GLFTLAP TIGLNMARQ Sbjct: 121 SASPAAAAGPDRPVVVSVVGLVHTSGLFTLAPGARVADALQAAGGALAGADTIGLNMARQ 180 Query: 181 LADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQ 240 LADGEQIVVGLAPVAGQPKRF GPN AEVLDLNTATVEQ Sbjct: 181 LADGEQIVVGLAPVAGQPKRFGSSIGAATPSPAPAATSGTRSPGPNLAEVLDLNTATVEQ 240 Query: 241 LDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 LDSLPGVGPVTAAAIVSWRAANG FTSVDQLAEVDGIGPARLQKLRSLVRV Sbjct: 241 LDSLPGVGPVTAAAIVSWRAANGNFTSVDQLAEVDGIGPARLQKLRSLVRV 291 >tr|Q7TYM5|Q7TYM5_MYCBO Tax_Id=1765 SubName: Full=Putative uncharacterized protein Mb2438c;[Mycobacterium bovis] Length = 297 Score = 243 bits (620), Expect = 2e-62 Identities = 149/300 (49%), Positives = 162/300 (54%), Gaps = 12/300 (4%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAE-------SGAXXXXXXXXXXNSLLPRWLPE 53 MRTELPAERLQRRL PD+ HA S + NSLLPRWLP+ Sbjct: 1 MRTELPAERLQRRLGAVPDIDSHAASAHLDPEPHDPTDDGPDHDEPRDDPNSLLPRWLPD 60 Query: 54 AGDGSGLLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXX 113 G G R+RADPGR RDR PVMSAKLP VE V Sbjct: 61 TSRGQGWADRIRADPGRAGAVALAVIAALAVLVTVFTLIRDRTEPVMSAKLPPVEPVSPT 120 Query: 114 XXXXXXXXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTI 173 PVVVSVVGLVHTPGL TLAP T+ Sbjct: 121 NPRSSASPGSPDRSGL---PVVVSVVGLVHTPGLVTLAPGARIADALQAAGGAVDGADTV 177 Query: 174 GLNMARQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXX--GPNPAEVL 231 GLNMARQL DGEQIVVGLAP +GQP+ P AEVL Sbjct: 178 GLNMARQLGDGEQIVVGLAPPSGQPRVLGSSVGAGTPGPAGTSGTATTGPKTAPKTAEVL 237 Query: 232 DLNTATVEQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 DLNTATVEQLD+LPG+GPVTAAAIV+WR NG+FTSVDQLA+VDGIGPARL KLR+LVRV Sbjct: 238 DLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQLADVDGIGPARLDKLRNLVRV 297 >tr|C1AQY0|C1AQY0_MYCBT Tax_Id=561275 SubName: Full=Putative uncharacterized protein;[Mycobacterium bovis] Length = 297 Score = 243 bits (620), Expect = 2e-62 Identities = 149/300 (49%), Positives = 162/300 (54%), Gaps = 12/300 (4%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAE-------SGAXXXXXXXXXXNSLLPRWLPE 53 MRTELPAERLQRRL PD+ HA S + NSLLPRWLP+ Sbjct: 1 MRTELPAERLQRRLGAVPDIDSHAASAHLDPEPHDPTDDGPDHDEPRDDPNSLLPRWLPD 60 Query: 54 AGDGSGLLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXX 113 G G R+RADPGR RDR PVMSAKLP VE V Sbjct: 61 TSRGQGWADRIRADPGRAGAVALAVIAALAVLVTVFTLIRDRTEPVMSAKLPPVEPVSPT 120 Query: 114 XXXXXXXXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTI 173 PVVVSVVGLVHTPGL TLAP T+ Sbjct: 121 NPRSSASPGSPDRSGL---PVVVSVVGLVHTPGLVTLAPGARIADALQAAGGAVDGADTV 177 Query: 174 GLNMARQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXX--GPNPAEVL 231 GLNMARQL DGEQIVVGLAP +GQP+ P AEVL Sbjct: 178 GLNMARQLGDGEQIVVGLAPPSGQPRVLGSSVGAGTPGPAGTSGTATTGPKTAPKTAEVL 237 Query: 232 DLNTATVEQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 DLNTATVEQLD+LPG+GPVTAAAIV+WR NG+FTSVDQLA+VDGIGPARL KLR+LVRV Sbjct: 238 DLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQLADVDGIGPARLDKLRNLVRV 297 >tr|A1KLA7|A1KLA7_MYCBP Tax_Id=410289 SubName: Full=Putative uncharacterized protein BCG_2431c;[Mycobacterium bovis] Length = 297 Score = 243 bits (620), Expect = 2e-62 Identities = 149/300 (49%), Positives = 162/300 (54%), Gaps = 12/300 (4%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAE-------SGAXXXXXXXXXXNSLLPRWLPE 53 MRTELPAERLQRRL PD+ HA S + NSLLPRWLP+ Sbjct: 1 MRTELPAERLQRRLGAVPDIDSHAASAHLDPEPHDPTDDGPDHDEPRDDPNSLLPRWLPD 60 Query: 54 AGDGSGLLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXX 113 G G R+RADPGR RDR PVMSAKLP VE V Sbjct: 61 TSRGQGWADRIRADPGRAGAVALAVIAALAVLVTVFTLIRDRTEPVMSAKLPPVEPVSPT 120 Query: 114 XXXXXXXXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTI 173 PVVVSVVGLVHTPGL TLAP T+ Sbjct: 121 NPRSSASPGSPDRSGL---PVVVSVVGLVHTPGLVTLAPGARIADALQAAGGAVDGADTV 177 Query: 174 GLNMARQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXX--GPNPAEVL 231 GLNMARQL DGEQIVVGLAP +GQP+ P AEVL Sbjct: 178 GLNMARQLGDGEQIVVGLAPPSGQPRVLGSSVGAGTPGPAGTSGTATTGPKTAPKTAEVL 237 Query: 232 DLNTATVEQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 DLNTATVEQLD+LPG+GPVTAAAIV+WR NG+FTSVDQLA+VDGIGPARL KLR+LVRV Sbjct: 238 DLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQLADVDGIGPARLDKLRNLVRV 297 >tr|P71728|P71728_MYCTU Tax_Id=1773 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis] Length = 297 Score = 241 bits (614), Expect = 9e-62 Identities = 148/300 (49%), Positives = 161/300 (53%), Gaps = 12/300 (4%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAE-------SGAXXXXXXXXXXNSLLPRWLPE 53 MRTELPAERLQRRL PD+ HA S + NSLLPRWLP+ Sbjct: 1 MRTELPAERLQRRLGAVPDIDSHAASAHLDPEPHDPTDDGPDHDEPRDDPNSLLPRWLPD 60 Query: 54 AGDGSGLLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXX 113 G G R+RADPGR RDR PVMSAKLP VE V Sbjct: 61 TSRGQGWADRIRADPGRAGAVALAVIAALAVLVTVFTLIRDRTEPVMSAKLPPVEPVSPT 120 Query: 114 XXXXXXXXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTI 173 PVVVSVVGLVHTPGL TLAP T+ Sbjct: 121 NPRSSASPGSPDRSGL---PVVVSVVGLVHTPGLVTLAPGARIADALQAAGGAVDGADTV 177 Query: 174 GLNMARQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXX--GPNPAEVL 231 GLNMARQL DGEQIVVGLAP +GQP+ P AEVL Sbjct: 178 GLNMARQLGDGEQIVVGLAPPSGQPRVLGSSVGAGTPGPAGTSGTATTGPKTAPKTAEVL 237 Query: 232 DLNTATVEQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 DLNTATVEQLD+LPG+GPVTAAAIV+WR NG+FTSVDQLA+VDGIGPARL K R+LVRV Sbjct: 238 DLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQLADVDGIGPARLDKRRNLVRV 297 >tr|A5U5B0|A5U5B0_MYCTA Tax_Id=419947 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis] Length = 297 Score = 241 bits (614), Expect = 9e-62 Identities = 148/300 (49%), Positives = 161/300 (53%), Gaps = 12/300 (4%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAE-------SGAXXXXXXXXXXNSLLPRWLPE 53 MRTELPAERLQRRL PD+ HA S + NSLLPRWLP+ Sbjct: 1 MRTELPAERLQRRLGAVPDIDSHAASAHLDPEPHDPTDDGPDHDEPRDDPNSLLPRWLPD 60 Query: 54 AGDGSGLLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXX 113 G G R+RADPGR RDR PVMSAKLP VE V Sbjct: 61 TSRGQGWADRIRADPGRAGAVALAVIAALAVLVTVFTLIRDRTEPVMSAKLPPVEPVSPT 120 Query: 114 XXXXXXXXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTI 173 PVVVSVVGLVHTPGL TLAP T+ Sbjct: 121 NPRSSASPGSPDRSGL---PVVVSVVGLVHTPGLVTLAPGARIADALQAAGGAVDGADTV 177 Query: 174 GLNMARQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXX--GPNPAEVL 231 GLNMARQL DGEQIVVGLAP +GQP+ P AEVL Sbjct: 178 GLNMARQLGDGEQIVVGLAPPSGQPRVLGSSVGAGTPGPAGTSGTATTGPKTAPKTAEVL 237 Query: 232 DLNTATVEQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 DLNTATVEQLD+LPG+GPVTAAAIV+WR NG+FTSVDQLA+VDGIGPARL K R+LVRV Sbjct: 238 DLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQLADVDGIGPARLDKRRNLVRV 297 >tr|A5WQ31|A5WQ31_MYCTF Tax_Id=336982 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis] Length = 297 Score = 241 bits (614), Expect = 9e-62 Identities = 148/300 (49%), Positives = 161/300 (53%), Gaps = 12/300 (4%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAE-------SGAXXXXXXXXXXNSLLPRWLPE 53 MRTELPAERLQRRL PD+ HA S + NSLLPRWLP+ Sbjct: 1 MRTELPAERLQRRLGAVPDIDSHAASAHLDPEPHDPTDDGPDHDEPRDDPNSLLPRWLPD 60 Query: 54 AGDGSGLLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXX 113 G G R+RADPGR RDR PVMSAKLP VE V Sbjct: 61 TSRGQGWADRIRADPGRAGAVALAVIAALAVLVTVFTLIRDRTEPVMSAKLPPVEPVSPT 120 Query: 114 XXXXXXXXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTI 173 PVVVSVVGLVHTPGL TLAP T+ Sbjct: 121 NPRSSASPGSPDRSGL---PVVVSVVGLVHTPGLVTLAPGARIADALQAAGGAVDGADTV 177 Query: 174 GLNMARQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXX--GPNPAEVL 231 GLNMARQL DGEQIVVGLAP +GQP+ P AEVL Sbjct: 178 GLNMARQLGDGEQIVVGLAPPSGQPRVLGSSVGAGTPGPAGTSGTATTGPKTAPKTAEVL 237 Query: 232 DLNTATVEQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 DLNTATVEQLD+LPG+GPVTAAAIV+WR NG+FTSVDQLA+VDGIGPARL K R+LVRV Sbjct: 238 DLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQLADVDGIGPARLDKRRNLVRV 297 >tr|A4KJG4|A4KJG4_MYCTU Tax_Id=395095 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis str. Haarlem] Length = 297 Score = 241 bits (614), Expect = 9e-62 Identities = 148/300 (49%), Positives = 161/300 (53%), Gaps = 12/300 (4%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAE-------SGAXXXXXXXXXXNSLLPRWLPE 53 MRTELPAERLQRRL PD+ HA S + NSLLPRWLP+ Sbjct: 1 MRTELPAERLQRRLGAVPDIDSHAASAHLDPEPHDPTDDGPDHDEPRDDPNSLLPRWLPD 60 Query: 54 AGDGSGLLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXX 113 G G R+RADPGR RDR PVMSAKLP VE V Sbjct: 61 TSRGQGWADRIRADPGRAGAVALAVIAALAVLVTVFTLIRDRTEPVMSAKLPPVEPVSPT 120 Query: 114 XXXXXXXXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTI 173 PVVVSVVGLVHTPGL TLAP T+ Sbjct: 121 NPRSSASPGSPDRSGL---PVVVSVVGLVHTPGLVTLAPGARIADALQAAGGAVDGADTV 177 Query: 174 GLNMARQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXX--GPNPAEVL 231 GLNMARQL DGEQIVVGLAP +GQP+ P AEVL Sbjct: 178 GLNMARQLGDGEQIVVGLAPPSGQPRVLGSSVGAGTPGPAGTSGTATTGPKTAPKTAEVL 237 Query: 232 DLNTATVEQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 DLNTATVEQLD+LPG+GPVTAAAIV+WR NG+FTSVDQLA+VDGIGPARL K R+LVRV Sbjct: 238 DLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQLADVDGIGPARLDKRRNLVRV 297 >tr|A2VKE1|A2VKE1_MYCTU Tax_Id=348776 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis C] Length = 297 Score = 241 bits (614), Expect = 9e-62 Identities = 148/300 (49%), Positives = 161/300 (53%), Gaps = 12/300 (4%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAE-------SGAXXXXXXXXXXNSLLPRWLPE 53 MRTELPAERLQRRL PD+ HA S + NSLLPRWLP+ Sbjct: 1 MRTELPAERLQRRLGAVPDIDSHAASAHLDPEPHDPTDDGPDHDEPRDDPNSLLPRWLPD 60 Query: 54 AGDGSGLLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXX 113 G G R+RADPGR RDR PVMSAKLP VE V Sbjct: 61 TSRGQGWADRIRADPGRAGAVALAVIAALAVLVTVFTLIRDRTEPVMSAKLPPVEPVSPT 120 Query: 114 XXXXXXXXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTI 173 PVVVSVVGLVHTPGL TLAP T+ Sbjct: 121 NPRSSASPGSPDRSGL---PVVVSVVGLVHTPGLVTLAPGARIADALQAAGGAVDGADTV 177 Query: 174 GLNMARQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXX--GPNPAEVL 231 GLNMARQL DGEQIVVGLAP +GQP+ P AEVL Sbjct: 178 GLNMARQLGDGEQIVVGLAPPSGQPRVLGSSVGAGTPGPAGTSGTATTGPKTAPKTAEVL 237 Query: 232 DLNTATVEQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 DLNTATVEQLD+LPG+GPVTAAAIV+WR NG+FTSVDQLA+VDGIGPARL K R+LVRV Sbjct: 238 DLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQLADVDGIGPARLDKRRNLVRV 297 >tr|C6DN68|C6DN68_MYCTK Tax_Id=478434 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis] Length = 298 Score = 236 bits (602), Expect = 2e-60 Identities = 148/301 (49%), Positives = 161/301 (53%), Gaps = 13/301 (4%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAE-------SGAXXXXXXXXXXNSLLPRWLPE 53 MRTELPAERLQRRL PD+ HA S + NSLLPRWLP+ Sbjct: 1 MRTELPAERLQRRLGAVPDIDSHAASAHLDPEPHDPTDDGPDHDEPRDDPNSLLPRWLPD 60 Query: 54 AGDGSGLLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXX 113 G G R+RADPGR RDR PVMSAKLP VE V Sbjct: 61 TSRGQGWADRIRADPGRAGAVALAVIAALAVLVTVFTLIRDRTEPVMSAKLPPVEPVSPT 120 Query: 114 XXXXXXXXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTI 173 PVVVSVVGLVHTPGL TLAP T+ Sbjct: 121 NPRSSASPGSPDRSGL---PVVVSVVGLVHTPGLVTLAPGARIADALQAAGGAVDGADTV 177 Query: 174 GLNMARQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXX--GPNPAEV- 230 GLNMARQL DGEQIVVGLAP +GQP+ P AEV Sbjct: 178 GLNMARQLGDGEQIVVGLAPPSGQPRVLGSSVGAGTPGPAGTSGTATTGPKTAPKTAEVV 237 Query: 231 LDLNTATVEQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVR 290 LDLNTATVEQLD+LPG+GPVTAAAIV+WR NG+FTSVDQLA+VDGIGPARL K R+LVR Sbjct: 238 LDLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQLADVDGIGPARLDKRRNLVR 297 Query: 291 V 291 V Sbjct: 298 V 298 >tr|A0QDK4|A0QDK4_MYCA1 Tax_Id=243243 SubName: Full=Competence protein ComEA helix-hairpin-helix repeat region;[Mycobacterium avium] Length = 286 Score = 234 bits (598), Expect = 7e-60 Identities = 147/293 (50%), Positives = 163/293 (55%), Gaps = 9/293 (3%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAESGAXXXXXXXXXX-NSLLPRWLPEAGDGSG 59 MRTELPAERLQRRL PD A E G NSLLPRWLP A + G Sbjct: 1 MRTELPAERLQRRLRAEPDA--DAAVQPEEPGPIAGEDFPDDDQNSLLPRWLPGAPEHRG 58 Query: 60 LLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXXXXXXXX 119 ++R+RADPGR RDRPAPVMSAKLP VE V Sbjct: 59 WVARIRADPGRAGAIGLAIVAALAVLVTVFTLIRDRPAPVMSAKLPPVEKVSTASPRSSA 118 Query: 120 XXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMAR 179 DRPVVVSVVGLVHTPGL TLAP T GLNMAR Sbjct: 119 SPSGGP-----DRPVVVSVVGLVHTPGLVTLAPGARIADAVQAAGGAVNGADTAGLNMAR 173 Query: 180 QLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXG-PNPAEVLDLNTATV 238 L DGEQIVVGLAPV GQP P ++ +DLNTATV Sbjct: 174 PLDDGEQIVVGLAPVPGQPPVLGSSVAAGSTPAPKPPPGPGAAKAKPKTSDAVDLNTATV 233 Query: 239 EQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 ++LD+LPGVGPVTAAAIV+WR NG+FTSVDQLA+V+GIGPARL+KLR+LVRV Sbjct: 234 QELDALPGVGPVTAAAIVAWRQTNGRFTSVDQLADVEGIGPARLEKLRALVRV 286 >tr|Q73XT3|Q73XT3_MYCPA Tax_Id=1770 SubName: Full=Putative uncharacterized protein;[Mycobacterium paratuberculosis] Length = 286 Score = 230 bits (586), Expect = 2e-58 Identities = 145/293 (49%), Positives = 161/293 (54%), Gaps = 9/293 (3%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAESGAXXXXXXXXXX-NSLLPRWLPEAGDGSG 59 M+TELPAER QRRL PD A E G NSLLPRWLP A + G Sbjct: 1 MQTELPAERPQRRLRAEPDA--DAAVQPEEPGPIAGEDSPDDDQNSLLPRWLPGAPEHRG 58 Query: 60 LLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXXXXXXXX 119 ++R+RADPGR RDRPAPVMSAKLP VE V Sbjct: 59 WVARIRADPGRAGAIGLAIVAALAVLVTVFTLIRDRPAPVMSAKLPPVEKVSTASPRSSA 118 Query: 120 XXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMAR 179 DRPVVVSVVGLVHTPGL TLAP T GLNMAR Sbjct: 119 SPSGGP-----DRPVVVSVVGLVHTPGLVTLAPGARIADAVQAAGGAVNGADTAGLNMAR 173 Query: 180 QLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXG-PNPAEVLDLNTATV 238 L DGEQIVVGLAPV GQP P + +DLNTATV Sbjct: 174 PLDDGEQIVVGLAPVPGQPPVLGSSVAAGSTPAPKPPPGPGAAKAKPKTGDAVDLNTATV 233 Query: 239 EQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 ++LD+LPGVGPVTAAAIV+WR NG+FTSVDQLA+V+GIGPARL+KLR+LVRV Sbjct: 234 QELDALPGVGPVTAAAIVAWRQTNGRFTSVDQLADVEGIGPARLEKLRALVRV 286 >tr|A0R105|A0R105_MYCS2 Tax_Id=246196 SubName: Full=DNA-binding protein;[Mycobacterium smegmatis] Length = 292 Score = 199 bits (506), Expect = 3e-49 Identities = 131/293 (44%), Positives = 152/293 (51%), Gaps = 15/293 (5%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAESGAXXXXXXXXXXNSLLPRWLPEAGDGS-- 58 M TELP +RL+RRL + D AA++G ++ L +WLP+ +G Sbjct: 13 MGTELPVQRLRRRLGSDTDATTDTID-AADAGDTEDSESGVAPDTALSKWLPDTTEGQRP 71 Query: 59 GLLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXXXXXXX 118 L+ +RADPGR RDRPAPVMSA LP V+ V Sbjct: 72 AWLNVIRADPGRVGVLALATLGVLAVLITVFVVLRDRPAPVMSANLPPVQMVSSSAPTPE 131 Query: 119 XXXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMA 178 PVVVSVVGLVH PGL TL+ IGLNMA Sbjct: 132 AAAG----------PVVVSVVGLVHKPGLVTLSSGARIADALTAAGGALDGADLIGLNMA 181 Query: 179 RQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATV 238 R++ADGEQIVVG+A AGQP G + LDLNTATV Sbjct: 182 RRVADGEQIVVGIAAPAGQPTTMGSSVSTAEATGAAEPAAGGG--GQTASGPLDLNTATV 239 Query: 239 EQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 EQLD+LPGVGPVTA AIVSWR ANG+F SVDQL EVDGIGPARL+KLR LVRV Sbjct: 240 EQLDALPGVGPVTAEAIVSWRNANGQFASVDQLGEVDGIGPARLEKLRGLVRV 292 >tr|A1TBZ2|A1TBZ2_MYCVP Tax_Id=350058 SubName: Full=Competence protein ComEA helix-hairpin-helix repeat protein;[Mycobacterium vanbaalenii] Length = 269 Score = 196 bits (499), Expect = 2e-48 Identities = 130/293 (44%), Positives = 153/293 (52%), Gaps = 26/293 (8%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAESGAXXXXXXXXXXNSLLPRWLPEAGDG--S 58 M TELPAERL+RRL HA++G E ++ L RWLP + G S Sbjct: 1 MSTELPAERLRRRLGADG----HADTGDDED----------PPDTTLSRWLPASAPGGPS 46 Query: 59 GLLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXXXXXXX 118 L++RVRADPGR RD P V+SAKLP VE V Sbjct: 47 ALMARVRADPGRAGVVALGVIGIVAVLVTVLSLIRDSPPAVVSAKLPPVEMVSSPAPGAG 106 Query: 119 XXXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMA 178 PVVVSVVGLVHTPGL TLAP +GLNMA Sbjct: 107 PAAPGPAG------PVVVSVVGLVHTPGLVTLAPGARIADALDAAGGALDGADVLGLNMA 160 Query: 179 RQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATV 238 R++ADGEQIVVG+ AGQP ++DLNTAT Sbjct: 161 RRVADGEQIVVGIGAPAGQPTEMGSSIVSQAAEPGAASPQTPAA----STGLVDLNTATA 216 Query: 239 EQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 EQLD+LPGVGPVTAAAI++WR ANG+F+SV+QL +VDGIGPARL KLR+LVRV Sbjct: 217 EQLDTLPGVGPVTAAAILAWRDANGRFSSVEQLGDVDGIGPARLDKLRALVRV 269 >tr|A4T2G7|A4T2G7_MYCGI Tax_Id=350054 SubName: Full=Competence protein ComEA helix-hairpin-helix repeat protein; Flags: Precursor;[Mycobacterium gilvum] Length = 263 Score = 195 bits (495), Expect = 6e-48 Identities = 130/293 (44%), Positives = 149/293 (50%), Gaps = 32/293 (10%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAESGAXXXXXXXXXXNSLLPRWLP--EAGDGS 58 M TELPA+RL+RRL + PD AE A ++ L RWLP E S Sbjct: 1 MSTELPADRLRRRLGSDPDT---AEDDAPDTS--------------LSRWLPADEPSGPS 43 Query: 59 GLLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXXXXXXX 118 L+R+RADPGR D P V+SAKLP V+ Sbjct: 44 AWLTRIRADPGRAGVIALGVVGVVAVLVTVLTLIGDSPPAVVSAKLPPVDMASSAAPGAP 103 Query: 119 XXXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMA 178 PVVVSVVGLVHTPGL TL P +GLNMA Sbjct: 104 APA----------EPVVVSVVGLVHTPGLVTLPPGSRIADALDAAGGALDGADMLGLNMA 153 Query: 179 RQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATV 238 R++ADGEQIVVGL GQP R P ++DLN+ATV Sbjct: 154 RRVADGEQIVVGLGAPPGQPTRMGSAVVADAGSPGGGAMPENSPGSPG---LVDLNSATV 210 Query: 239 EQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 EQLD+LPGVGPVTAAAIV+WR ANG+FTSVDQL +VDGIGPARL KLR LVRV Sbjct: 211 EQLDTLPGVGPVTAAAIVAWRDANGRFTSVDQLGDVDGIGPARLDKLRDLVRV 263 >tr|Q1B657|Q1B657_MYCSS Tax_Id=164756 SubName: Full=Competence protein ComEA helix-hairpin-helix region;[Mycobacterium sp.] Length = 267 Score = 189 bits (481), Expect = 2e-46 Identities = 129/294 (43%), Positives = 147/294 (50%), Gaps = 30/294 (10%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAESGAXXXXXXXXXXNSLLPRWLPEAGD--GS 58 MRTE PAERL RRL AE GA ++ L RWLP+ G Sbjct: 1 MRTEEPAERLHRRLG--------AEEEPDHDGARP--------DTALSRWLPDTATPTGP 44 Query: 59 GLLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXXXXXXX 118 G ++ VRADPGR RD P PV++AKLP VE V Sbjct: 45 GWVAAVRADPGRAGVVGLAVVGVIAVLVTVFTMWRDDPPPVVAAKLPEVEMVSSASPKPA 104 Query: 119 XXXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMA 178 D+PVVVSVVGLVH PGL TL P IGLNMA Sbjct: 105 P-----------DQPVVVSVVGLVHKPGLVTLEPGARIADALEAAGGAVDGADLIGLNMA 153 Query: 179 RQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPN-PAEVLDLNTAT 237 R+L DGEQI+VG+A GQP P E ++LNTAT Sbjct: 154 RRLTDGEQIIVGIAAGPGQPATMGSSTTAAGDGGAAAPSGSAPAERTGAPGEPVNLNTAT 213 Query: 238 VEQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 VEQLD+LPGVGPVTAAAIV+WR A+G F+SVDQL +VDGIGPARL KLR LV V Sbjct: 214 VEQLDTLPGVGPVTAAAIVAWRDAHGAFSSVDQLGDVDGIGPARLAKLRDLVHV 267 >tr|A3Q2C5|A3Q2C5_MYCSJ Tax_Id=164757 SubName: Full=Competence protein ComEA helix-hairpin-helix repeat protein;[Mycobacterium sp.] Length = 267 Score = 189 bits (481), Expect = 2e-46 Identities = 129/294 (43%), Positives = 147/294 (50%), Gaps = 30/294 (10%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAESGAXXXXXXXXXXNSLLPRWLPEAGD--GS 58 MRTE PAERL RRL AE GA ++ L RWLP+ G Sbjct: 1 MRTEEPAERLHRRLG--------AEEEPDHDGARP--------DTALSRWLPDTATPTGP 44 Query: 59 GLLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXXXXXXX 118 G ++ VRADPGR RD P PV++AKLP VE V Sbjct: 45 GWVAAVRADPGRAGVVGLAVVGVIAVLVTVFTMWRDDPPPVVAAKLPEVEMVSSASPKPA 104 Query: 119 XXXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMA 178 D+PVVVSVVGLVH PGL TL P IGLNMA Sbjct: 105 P-----------DQPVVVSVVGLVHKPGLVTLEPGARIADALEAAGGAVDGADLIGLNMA 153 Query: 179 RQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPN-PAEVLDLNTAT 237 R+L DGEQI+VG+A GQP P E ++LNTAT Sbjct: 154 RRLTDGEQIIVGIAAGPGQPATMGSSTTAAGDGGAAAPSGSAPAERTGAPGEPVNLNTAT 213 Query: 238 VEQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 VEQLD+LPGVGPVTAAAIV+WR A+G F+SVDQL +VDGIGPARL KLR LV V Sbjct: 214 VEQLDTLPGVGPVTAAAIVAWRDAHGAFSSVDQLGDVDGIGPARLAKLRDLVHV 267 >tr|A1UIX9|A1UIX9_MYCSK Tax_Id=189918 SubName: Full=Competence protein ComEA helix-hairpin-helix repeat protein;[Mycobacterium sp.] Length = 267 Score = 189 bits (481), Expect = 2e-46 Identities = 129/294 (43%), Positives = 147/294 (50%), Gaps = 30/294 (10%) Query: 1 MRTELPAERLQRRLSTAPDLRLHAESGAAESGAXXXXXXXXXXNSLLPRWLPEAGD--GS 58 MRTE PAERL RRL AE GA ++ L RWLP+ G Sbjct: 1 MRTEEPAERLHRRLG--------AEEEPDHDGARP--------DTALSRWLPDTATPTGP 44 Query: 59 GLLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLPAVEHVXXXXXXXX 118 G ++ VRADPGR RD P PV++AKLP VE V Sbjct: 45 GWVAAVRADPGRAGVVGLAVVGVIAVLVTVFTMWRDDPPPVVAAKLPEVEMVSSASPKPA 104 Query: 119 XXXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMA 178 D+PVVVSVVGLVH PGL TL P IGLNMA Sbjct: 105 P-----------DQPVVVSVVGLVHKPGLVTLEPGARIADALEAAGGAVDGADLIGLNMA 153 Query: 179 RQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPN-PAEVLDLNTAT 237 R+L DGEQI+VG+A GQP P E ++LNTAT Sbjct: 154 RRLTDGEQIIVGIAAGPGQPATMGSSTTAAGDGGAAAPSGSAPAERTGAPGEPVNLNTAT 213 Query: 238 VEQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 VEQLD+LPGVGPVTAAAIV+WR A+G F+SVDQL +VDGIGPARL KLR LV V Sbjct: 214 VEQLDTLPGVGPVTAAAIVAWRDAHGAFSSVDQLGDVDGIGPARLAKLRDLVHV 267 >tr|Q7D766|Q7D766_MYCTU Tax_Id=1773 SubName: Full=ComE operon protein 1, putative;[Mycobacterium tuberculosis] Length = 213 Score = 185 bits (470), Expect = 5e-45 Identities = 111/201 (55%), Positives = 120/201 (59%), Gaps = 5/201 (2%) Query: 93 RDRPAPVMSAKLPAVEHVXXXXXXXXXXXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAP 152 RDR PVMSAKLP VE V PVVVSVVGLVHTPGL TLAP Sbjct: 16 RDRTEPVMSAKLPPVEPVSPTNPRSSASPGSPDRSGL---PVVVSVVGLVHTPGLVTLAP 72 Query: 153 XXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXX 212 T+GLNMARQL DGEQIVVGLAP +GQP+ Sbjct: 73 GARIADALQAAGGAVDGADTVGLNMARQLGDGEQIVVGLAPPSGQPRVLGSSVGAGTPGP 132 Query: 213 XXXXXXXXXXX--GPNPAEVLDLNTATVEQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQ 270 P AEVLDLNTATVEQLD+LPG+GPVTAAAIV+WR NG+FTSVDQ Sbjct: 133 AGTSGTATTGPKTAPKTAEVLDLNTATVEQLDALPGIGPVTAAAIVAWRQRNGRFTSVDQ 192 Query: 271 LAEVDGIGPARLQKLRSLVRV 291 LA+VDGIGPARL K R+LVRV Sbjct: 193 LADVDGIGPARLDKRRNLVRV 213 >tr|B1MMZ9|B1MMZ9_MYCA9 Tax_Id=561007 SubName: Full=Putative uncharacterized protein;[Mycobacterium abscessus] Length = 277 Score = 150 bits (379), Expect = 2e-34 Identities = 103/244 (42%), Positives = 118/244 (48%), Gaps = 21/244 (8%) Query: 49 RWLPE---AGDGSGLLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAPVMSAKLP 105 RWLP+ AG G L VR DPGR R PAPV SA LP Sbjct: 50 RWLPDSLTAGGTRGWLESVRTDPGRAGVVALGAIGVLAVLVTVFTVMRQPPAPV-SANLP 108 Query: 106 AVEHVXXXXXXXXXXXXXXXXXXXXDRPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXX 165 V+ V +V+SVVGLV PGL TLA Sbjct: 109 PVQPVSSSSVSAPSS-------------LVISVVGLVKRPGLVTLATGARVADAVTAAGG 155 Query: 166 XXXXXXTIGLNMARQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGP 225 I LNMAR +ADG+QIVVGLAPV GQP GP Sbjct: 156 AVDGADVITLNMARPVADGDQIVVGLAPVPGQP----VGMASSIVAAGQTPAGSTGSKGP 211 Query: 226 NPAEVLDLNTATVEQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKL 285 ++LNTAT +LD+LPGVGPV AA+IV WR+ +GKFTS+DQLAEVDGIGP+RL KL Sbjct: 212 GAPGRVNLNTATESELDALPGVGPVMAASIVRWRSEHGKFTSIDQLAEVDGIGPSRLDKL 271 Query: 286 RSLV 289 R V Sbjct: 272 RDFV 275 >tr|C1A1J4|C1A1J4_RHOE4 Tax_Id=234621 SubName: Full=Putative DNA-binding protein;[Rhodococcus erythropolis] Length = 306 Score = 125 bits (315), Expect = 4e-27 Identities = 75/158 (47%), Positives = 90/158 (56%), Gaps = 8/158 (5%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAP 193 +VVSVVGLV TPGL L T+GLN+A++LADG+QIVVG A Sbjct: 157 LVVSVVGLVRTPGLVNLHSGSRIADALAAAGGVLEGAETVGLNLAQKLADGDQIVVGAAD 216 Query: 194 VAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPVTAA 253 +G A +++LNTAT +LD LPGVGPVTAA Sbjct: 217 QSG--------GVSASSSTTAGGTGPAAAGESGGAGLVNLNTATEAELDDLPGVGPVTAA 268 Query: 254 AIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 AI+SWR +NGKFT ++QL EVDGIGPARL KLR LV V Sbjct: 269 AIISWRTSNGKFTDIEQLGEVDGIGPARLAKLRVLVSV 306 >tr|C3JRX5|C3JRX5_RHOER Tax_Id=596309 SubName: Full=DNA-binding protein;[Rhodococcus erythropolis SK121] Length = 293 Score = 125 bits (314), Expect = 6e-27 Identities = 77/166 (46%), Positives = 92/166 (55%), Gaps = 26/166 (15%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAP 193 VVVSVVGLV TPGL L T+GLN+A++L DG+QIVVG A Sbjct: 146 VVVSVVGLVRTPGLVNLHSGSRIADALAAAGGVLDGAETVGLNLAQKLVDGDQIVVGAAD 205 Query: 194 VAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAE--------VLDLNTATVEQLDSLP 245 +G G +PA +++LNTAT +LD LP Sbjct: 206 QSG------------------GVSSSTTAGGTSPAAAGESGGAGLVNLNTATEAELDELP 247 Query: 246 GVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 GVGPVTAAAI+SWR +NGKFT ++QL EVDGIGPARL KLR LV V Sbjct: 248 GVGPVTAAAIISWRTSNGKFTDIEQLGEVDGIGPARLAKLRVLVSV 293 >tr|Q5Z014|Q5Z014_NOCFA Tax_Id=37329 SubName: Full=Putative DNA-binding protein;[Nocardia farcinica] Length = 532 Score = 123 bits (309), Expect = 2e-26 Identities = 74/158 (46%), Positives = 88/158 (55%), Gaps = 1/158 (0%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAP 193 +VVSVVGLVH GL L GLN+A+++ DG+QI+VG A Sbjct: 376 LVVSVVGLVHRGGLVRLPAGARVADALAAAGGPRDGADLTGLNLAQRVQDGDQILVGAAA 435 Query: 194 VAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPVTAA 253 G R P A +DLNTAT QLD+LPGVGPVTA Sbjct: 436 PTGDGPRLGSATISAGGAGGAAGTTTGAPV-PGTAGKIDLNTATEAQLDALPGVGPVTAR 494 Query: 254 AIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 AI++WR ANG+FT+VDQLAEVDGIGPARL +LR LV V Sbjct: 495 AILAWRTANGRFTAVDQLAEVDGIGPARLARLRELVTV 532 >tr|D0LC07|D0LC07_GORB4 Tax_Id=526226 SubName: Full=Competence protein ComEA helix-hairpin-helix repeat protein;[Gordonia bronchialis] Length = 286 Score = 122 bits (306), Expect = 5e-26 Identities = 76/164 (46%), Positives = 90/164 (54%), Gaps = 7/164 (4%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAP 193 +VVSVVGLVH PGL L P T+ LN+A+ L DG+QI+VG A Sbjct: 124 LVVSVVGLVHRPGLVRLPPGARVADAIASAGGARRGADTVSLNLAQLLNDGDQILVGYAG 183 Query: 194 VAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEV------LDLNTATVEQLDSLPGV 247 G+ R P+ A ++LNTAT +QLD+LPGV Sbjct: 184 PDGRVLR-SAVVAATGSGAPPANEPGTTSGAPSAAPSGSSGSRVNLNTATEDQLDALPGV 242 Query: 248 GPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 GPVTA AI+ WR NG+FTSVDQL EVDGIGPARL KLR LV V Sbjct: 243 GPVTARAIIDWRTRNGRFTSVDQLGEVDGIGPARLAKLRDLVTV 286 >tr|C1AUQ3|C1AUQ3_RHOOB Tax_Id=632772 SubName: Full=Putative DNA-binding protein;[Rhodococcus opacus] Length = 286 Score = 122 bits (305), Expect = 6e-26 Identities = 89/261 (34%), Positives = 111/261 (42%), Gaps = 28/261 (10%) Query: 48 PRWLPEAGD----------------GSGLLSR---VRADPGRXXXXXXXXXXXXXXXXXX 88 P WL E G+ G L R R DPGR Sbjct: 33 PEWLAEPGEPGLDGEETWSAARRRGGFALPDRWRDARFDPGRYGAIALIVVGIVVATATV 92 Query: 89 XXXXRDRPAPVMSAKLPAVEHVXXXXXXXXXXXXXXXXXXXXDRPVVVSVVGLVHTPGLF 148 DRPA LPA V + +VVSVVGLV + GL Sbjct: 93 LAVRSDRPATQAVPSLPAAG-VHSLSPAPEPATVAAAPAPALEEEIVVSVVGLVVSAGLV 151 Query: 149 TLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAPVAGQPKRFXXXXXXX 208 L P T+GLN+A++L+DG+Q++VG+A P Sbjct: 152 RLPPGARVADALAAAGGVRDGGDTLGLNLAQRLSDGDQVLVGVATTQPPPSAVGGTSAGS 211 Query: 209 XXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPVTAAAIVSWRAANGKFTSV 268 P +++LNTAT +LD+LPGVGPVTAAAIV+WR NGKFT + Sbjct: 212 PGPAGAAT--------PAAGGLVNLNTATETELDALPGVGPVTAAAIVAWRTTNGKFTDI 263 Query: 269 DQLAEVDGIGPARLQKLRSLV 289 QL EVDGIGP RL+KLR+ V Sbjct: 264 SQLGEVDGIGPVRLEKLRAQV 284 >tr|Q0SH70|Q0SH70_RHOSR Tax_Id=101510 SubName: Full=Putative uncharacterized protein;[Rhodococcus sp.] Length = 287 Score = 114 bits (285), Expect = 1e-23 Identities = 66/156 (42%), Positives = 84/156 (53%), Gaps = 8/156 (5%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAP 193 +VVSVVGLV + GL L P T+GLN+A++L+DG+Q++VG A Sbjct: 138 IVVSVVGLVASTGLVRLPPGSRVADALAAAGGVRDGGDTLGLNLAQRLSDGDQVLVGAAT 197 Query: 194 VAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPVTAA 253 P +++LNTAT +LD+LPGVGPVTAA Sbjct: 198 TQAPPS--------AVGGASAASPGTAGAAAVTGGGLVNLNTATETELDALPGVGPVTAA 249 Query: 254 AIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLV 289 AIV+WR NG FT + QL EVDGIGP RL+KLR V Sbjct: 250 AIVAWRTTNGTFTDISQLGEVDGIGPVRLEKLRGQV 285 >tr|C6WRA2|C6WRA2_ACTMD Tax_Id=446462 SubName: Full=Competence protein ComEA helix-hairpin-helix repeat protein;[Actinosynnema mirum] Length = 242 Score = 110 bits (275), Expect = 2e-22 Identities = 66/158 (41%), Positives = 82/158 (51%), Gaps = 27/158 (17%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAP 193 +VV V G VH PGL T+ GLN+AR++ DGEQI VG+ P Sbjct: 112 LVVDVAGEVHAPGLVTVEDGARVADVLSRAGGVKPGASLTGLNLARKVTDGEQIAVGVPP 171 Query: 194 VAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPVTAA 253 +G G P +++NTATVEQLD+LPGVGPVTA Sbjct: 172 ASG---------------------------GAGPPAPVNINTATVEQLDALPGVGPVTAQ 204 Query: 254 AIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 IV RA G+FTSV QL EV+GIG ++L KL L+RV Sbjct: 205 RIVDHRARRGRFTSVQQLGEVEGIGGSKLAKLTDLIRV 242 >tr|A4F9N2|A4F9N2_SACEN Tax_Id=405948 SubName: Full=Competence protein ComEA helix-hairpin-helix region;[Saccharopolyspora erythraea] Length = 200 Score = 106 bits (264), Expect = 4e-21 Identities = 68/162 (41%), Positives = 79/162 (48%), Gaps = 21/162 (12%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAP 193 +VVSVVGLV PGL TL LN+AR+++DGEQ+ VG+ P Sbjct: 56 LVVSVVGLVPKPGLITLHTGDRVADALQGAGGALPGADISALNLARKVSDGEQLYVGVPP 115 Query: 194 ----VAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGP 249 G P G +DLNTAT EQ D LPGVG Sbjct: 116 PPELATGSP-----------------VGSARGTSGNGNDSKIDLNTATEEQFDELPGVGE 158 Query: 250 VTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 VTA IV WR NG+F SV+QL EVDGIG R +LR LVRV Sbjct: 159 VTAKRIVQWRTENGRFASVEQLREVDGIGDTRFSRLRELVRV 200 >tr|D1AA93|D1AA93_THECU Tax_Id=471852 SubName: Full=Competence protein ComEA helix-hairpin-helix repeat protein;[Thermomonospora curvata DSM 43183] Length = 271 Score = 100 bits (248), Expect = 3e-19 Identities = 65/163 (39%), Positives = 81/163 (49%), Gaps = 23/163 (14%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGL-A 192 +VV V G V PG+ TL P T LN+AR+L DGEQ+++GL A Sbjct: 127 LVVHVAGKVRKPGVVTLPPGARVADAIQAAGGLRPGADTGSLNLARRLVDGEQLMIGLPA 186 Query: 193 PVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPN----PAEVLDLNTATVEQLDSLPGVG 248 P P GP P ++DLNTAT EQL++LPGVG Sbjct: 187 PTTAMPP------------------PDAMPAGPQDAGAPGGLIDLNTATAEQLETLPGVG 228 Query: 249 PVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 PV A I+ +R NG F SV+QL EV GIG R +LR+ VRV Sbjct: 229 PVLAQRIIEYRTRNGGFRSVEQLQEVTGIGARRYAELRTRVRV 271 >tr|C2AU83|C2AU83_TSUPA Tax_Id=521096 SubName: Full=Competence protein ComEA-like protein with helix-hairpin-helix repeat region;[Tsukamurella paurometabola DSM 20162] Length = 277 Score = 100 bits (248), Expect = 3e-19 Identities = 60/160 (37%), Positives = 82/160 (51%), Gaps = 4/160 (2%) Query: 132 RPVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGL 191 R +VV+VVGLV PGL +AP T LN+A+ L DG+Q+VVG+ Sbjct: 122 RELVVAVVGLVRAPGLHRIAPGSRVADALTAARGTLADADTASLNLAQLLRDGDQVVVGV 181 Query: 192 APVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPVT 251 A K GP P+ +++NTA+ +LD LPGVGP T Sbjct: 182 ADGKSPVK----LRSSVVPAGTGSAAGGASASGPAPSAQVNINTASAAELDRLPGVGPAT 237 Query: 252 AAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 AAAI+++R NG F +VD L +V GIG A+L K+ + V Sbjct: 238 AAAIIAYREQNGPFKTVDDLGKVAGIGDAKLAKITPMATV 277 >tr|A0LSY6|A0LSY6_ACIC1 Tax_Id=351607 SubName: Full=Helix-hairpin-helix motif;[Acidothermus cellulolyticus] Length = 250 Score = 98.2 bits (243), Expect = 1e-18 Identities = 64/161 (39%), Positives = 85/161 (52%), Gaps = 9/161 (5%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGL-A 192 +VV VVG V PGL TL P T+ LN+A +L DGEQ+VVG+ Sbjct: 96 LVVDVVGRVAHPGLVTLPPGARVFDAVTAAGGVLPGTDTVALNLASRLVDGEQVVVGIPL 155 Query: 193 PVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAE--VLDLNTATVEQLDSLPGVGPV 250 P +G AE +++LNTAT ++L++LPGVGPV Sbjct: 156 PTSG------IGGVLPARDAGEPPSEASRPTAGQAAEHGLINLNTATQQELETLPGVGPV 209 Query: 251 TAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 A IV+WR +G+F+SV QL EV GIGPA+ +LR+ VRV Sbjct: 210 LAGNIVAWRNRHGRFSSVAQLQEVPGIGPAKYAQLRTRVRV 250 >tr|A5CR90|A5CR90_CLAM3 Tax_Id=443906 SubName: Full=Putative uncharacterized protein;[Clavibacter michiganensis subsp. michiganensis] Length = 223 Score = 97.1 bits (240), Expect = 2e-18 Identities = 65/166 (39%), Positives = 82/166 (49%), Gaps = 27/166 (16%) Query: 133 PVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVV--- 189 P+ V VVG V +PGL+ LAP T G+N+AR L+DGEQ+VV Sbjct: 78 PIYVHVVGAVVSPGLYPLAPGSRVVDALAAAHGFADGADTAGVNLARVLSDGEQLVVPRQ 137 Query: 190 GLAPV----AGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLP 245 G AP +G P +P+ +DLNTAT EQL++LP Sbjct: 138 GEAPAVPATSGAP--------------------GAAGGAASPSAPVDLNTATAEQLETLP 177 Query: 246 GVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 VGP AA I++WRAA+G+F V L V GIG L L LVRV Sbjct: 178 RVGPSLAARIIAWRAAHGRFARVADLGRVPGIGDRTLASLTPLVRV 223 >tr|A8KYV2|A8KYV2_FRASN Tax_Id=298653 SubName: Full=Helix-hairpin-helix motif;[Frankia sp.] Length = 319 Score = 96.3 bits (238), Expect = 4e-18 Identities = 64/156 (41%), Positives = 72/156 (46%), Gaps = 3/156 (1%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAP 193 VVV V G V PG+ L T GL +AR L DGEQ++V P Sbjct: 165 VVVDVAGRVARPGVVRLPAGSRVVDAVERAGGVLPGTDTTGLALARVLTDGEQVLVDGRP 224 Query: 194 VAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPVTAA 253 P P L+LNTATVEQLD+LPGVGPV A Sbjct: 225 GPAPPPPEAAGGGSSSGASAGSAGGSAVGSAGRP---LNLNTATVEQLDALPGVGPVLAQ 281 Query: 254 AIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLV 289 I+ WRAANG FTS DQL EV G+G RL L LV Sbjct: 282 RIIDWRAANGPFTSPDQLGEVSGVGDRRLADLLPLV 317 >tr|C5C480|C5C480_BEUC1 Tax_Id=471853 SubName: Full=Competence protein ComEA helix-hairpin-helix repeat protein;[Beutenbergia cavernae] Length = 290 Score = 95.5 bits (236), Expect = 6e-18 Identities = 62/161 (38%), Positives = 77/161 (47%), Gaps = 19/161 (11%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVV---G 190 VVV V GLV +PG+ +L P LN+AR L DGEQ+ V G Sbjct: 146 VVVHVAGLVASPGVVSLPPSSRVQDALEAAGGALPEADLAALNLARVLVDGEQVYVPAPG 205 Query: 191 LAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPV 250 AP AG G + ++LNTA + LD+LPG+GP Sbjct: 206 EAPPAGA----------------GGAPGAPAAEGGSDGGPVNLNTADLAALDTLPGIGPA 249 Query: 251 TAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 A IV WR ANG F V++L EV GIGPA L++LR LV V Sbjct: 250 LAQRIVEWRTANGSFVDVEELTEVSGIGPATLERLRPLVTV 290 >tr|B0RDA4|B0RDA4_CLAMS Tax_Id=31964 SubName: Full=Putative DNA-binding/transport protein; Flags: Precursor;[Clavibacter michiganensis subsp. sepedonicus] Length = 355 Score = 95.5 bits (236), Expect = 6e-18 Identities = 62/162 (38%), Positives = 79/162 (48%), Gaps = 15/162 (9%) Query: 133 PVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVV--- 189 P+ V VVG V +PGL+ LAP T G+N+AR L+DGEQ+VV Sbjct: 206 PIYVHVVGAVVSPGLYPLAPGSRVVDALTAAHGFADGADTAGVNLARVLSDGEQLVVPRQ 265 Query: 190 GLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGP 249 G A A P P+ +DLNTAT EQL++LP VGP Sbjct: 266 GEASAAPAPS------------GAAGAGGAAGGGTATPSAPVDLNTATAEQLETLPRVGP 313 Query: 250 VTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 AA +++WR+A+G+F V L V GIG L L LVRV Sbjct: 314 SLAARVIAWRSAHGRFARVADLGRVPGIGDRTLASLTPLVRV 355 >tr|C8XF30|C8XF30_NAKMY Tax_Id=479431 SubName: Full=Competence protein ComEA helix-hairpin-helix repeat protein;[Nakamurella multipartita] Length = 377 Score = 95.1 bits (235), Expect = 8e-18 Identities = 72/246 (29%), Positives = 101/246 (41%), Gaps = 18/246 (7%) Query: 50 WLPEAGDGSGLLSRVRADPGRXXXXXXXXXXXXXXXXXXXXXXRDRPAP--VMSAKLPAV 107 W+PE L R DPGR RDRP P V ++ + A Sbjct: 145 WVPEP------LRNSRVDPGRRGMIVLVLVAAVAAVVAAVGVWRDRPEPRPVETSMVAAA 198 Query: 108 EHVXXXXXXXXXXXXXXXXXXXXDRP--VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXX 165 + P ++VSV GLV PG+ L P Sbjct: 199 GQLTVSSGADASGATGSASASPTPAPSEILVSVTGLVANPGVVRLPPDARVADAIAAAGG 258 Query: 166 XXXXXXTIGLNMARQLADGEQIVVGLAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGP 225 G+N+A +L DG+ +VV VA + GP Sbjct: 259 TGPGANLTGMNLAARLTDGDSVVVTDTGVAAESAS--------GGAAAAAAGSGGGSGGP 310 Query: 226 NPAEVLDLNTATVEQLDSLPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKL 285 +++LNTA LD+LPGVGPV A I++WR+ +GKF+SV+QL E+ GIGP+R ++ Sbjct: 311 AAGGLVNLNTADEAALDTLPGVGPVMAQNIIAWRSEHGKFSSVEQLQEISGIGPSRYAQI 370 Query: 286 RSLVRV 291 +LV V Sbjct: 371 SALVTV 376 >tr|C7MPR3|C7MPR3_SACVD Tax_Id=471857 SubName: Full=DNA uptake protein;[Saccharomonospora viridis] Length = 352 Score = 94.7 bits (234), Expect = 1e-17 Identities = 60/158 (37%), Positives = 77/158 (48%), Gaps = 15/158 (9%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAP 193 +VVSVVG V PGL T+ P + +N+AR+++DGEQI VG+ P Sbjct: 209 LVVSVVGTVARPGLITVRPGARVADVIELAGGADSDTDLLTVNLARRVSDGEQIYVGVTP 268 Query: 194 VAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPVTAA 253 G A +DLNTA + L +LPGVG TA+ Sbjct: 269 PPGAEH---------------PPVAAVPADPSTSAAKVDLNTADRQLLQTLPGVGEATAS 313 Query: 254 AIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 I+ WR +G+FTSV QL EVDGIG R +LR LV V Sbjct: 314 RILEWRERHGRFTSVSQLREVDGIGEKRFARLRDLVSV 351 >tr|Q82C63|Q82C63_STRAW Tax_Id=33903 (comEA)SubName: Full=Putative exogenous DNA-binding protein;[Streptomyces avermitilis] Length = 387 Score = 90.9 bits (224), Expect = 2e-16 Identities = 60/157 (38%), Positives = 74/157 (47%), Gaps = 13/157 (8%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAP 193 +VV V G V PG+ L GLN AR LADGEQ+VVG Sbjct: 243 IVVDVSGKVRNPGIQRLPAGSRVADALRAAGGVRPGTNMQGLNRARLLADGEQVVVGGPA 302 Query: 194 VAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPVTAA 253 A P G P+ + LNTAT +QLD+LPGVGPV A Sbjct: 303 PAPDP-------------GTAATATGGSGAGTTPSTPVSLNTATADQLDTLPGVGPVLAQ 349 Query: 254 AIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVR 290 I+ +R +G F SVD+L EV+GIG R L++LVR Sbjct: 350 HIIDYRTQHGGFRSVDELREVNGIGDRRFADLQNLVR 386 >tr|B1VY20|B1VY20_STRGG Tax_Id=455632 SubName: Full=Putative DNA-binding protein;[Streptomyces griseus subsp. griseus] Length = 332 Score = 89.7 bits (221), Expect = 3e-16 Identities = 60/157 (38%), Positives = 72/157 (45%), Gaps = 11/157 (7%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAP 193 +VV V G V PG+ L GLN AR L DGEQ+VVGL Sbjct: 186 IVVDVSGKVRRPGVRRLPAGSRVADALDAAGGVRAGTDVTGLNRARVLMDGEQVVVGLP- 244 Query: 194 VAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPVTAA 253 G P GP P+ L LNTAT EQL++LPGVGPV A Sbjct: 245 -LGPP---------VSTTAGGGSAGAGGPGGPGPSAPLSLNTATAEQLETLPGVGPVLAQ 294 Query: 254 AIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVR 290 ++ +R N F SVD+L EV+GIG R + LVR Sbjct: 295 HMIDYRTENNGFRSVDELREVNGIGDRRFADIHPLVR 331 >tr|C1WVK9|C1WVK9_9ACTO Tax_Id=479435 SubName: Full=Competence protein ComEA-like protein with helix-hairpin-helix repeat region;[Kribbella flavida DSM 17836] Length = 226 Score = 89.7 bits (221), Expect = 3e-16 Identities = 60/164 (36%), Positives = 78/164 (47%), Gaps = 32/164 (19%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAP 193 VVV V G V PGL P LN+AR + DGEQI+VGL P Sbjct: 89 VVVHVAGKVRRPGLIHTRPGARVADALAAAGGALPGADLTTLNLARPVTDGEQILVGL-P 147 Query: 194 VAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAE------VLDLNTATVEQLDSLPGV 247 P GPNP +DLNTAT++QLD+LPGV Sbjct: 148 NLPPP-------------------------GPNPTPGRSTPTSVDLNTATLDQLDALPGV 182 Query: 248 GPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 GPV A I+ +R +G+FT++DQL EV G+G + + L+ VR+ Sbjct: 183 GPVLAQRILDYRTEHGRFTTIDQLQEVPGVGTKKYEDLKPHVRI 226 >tr|Q9RDL8|Q9RDL8_STRCO Tax_Id=1902 SubName: Full=Putative DNA-binding protein;[Streptomyces coelicolor] Length = 355 Score = 89.4 bits (220), Expect = 5e-16 Identities = 58/157 (36%), Positives = 73/157 (46%), Gaps = 14/157 (8%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAP 193 +VV V G V PG+ +L T GLN AR L DGEQ++VG Sbjct: 212 IVVDVGGKVRDPGVHSLPAGSRVADALRAAGGVRPGTKTDGLNRARFLVDGEQVIVGAPA 271 Query: 194 VAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPVTAA 253 +P PA + L+TAT +QLD+LPGVGPV A Sbjct: 272 PVPRP--------------GAGPAPDGPTGAAGPAAPVSLSTATTDQLDTLPGVGPVLAQ 317 Query: 254 AIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVR 290 I+ +R +G F SVD+L EV+GIG R LR LVR Sbjct: 318 HIIDYRTQHGGFRSVDELREVNGIGERRFADLRDLVR 354 >tr|C9Z7J6|C9Z7J6_STRSW Tax_Id=680198 SubName: Full=Putative membrane-located DNA-binding protein;[Streptomyces scabies] Length = 284 Score = 89.4 bits (220), Expect = 5e-16 Identities = 61/158 (38%), Positives = 72/158 (45%), Gaps = 14/158 (8%) Query: 133 PVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLA 192 P+VV V G V PG+ L T GLN AR L DGEQI+VG Sbjct: 140 PIVVDVGGKVRRPGVRRLPAGSRVADALRAAGGVRPGADTDGLNRARILVDGEQILVGRP 199 Query: 193 PVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPVTA 252 P G PA + LNTAT +QLD+LPGVGPV A Sbjct: 200 APPNGP--------------GVTAGAGAAVTGAAPATPVSLNTATADQLDTLPGVGPVLA 245 Query: 253 AAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVR 290 I+ R +G F SVD+L EV+GIG R LR LV+ Sbjct: 246 QHIIDHRTRHGGFRSVDELREVNGIGERRFADLRDLVQ 283 >tr|A1SHW1|A1SHW1_NOCSJ Tax_Id=196162 SubName: Full=Competence protein ComEA helix-hairpin-helix repeat protein;[Nocardioides sp.] Length = 300 Score = 88.2 bits (217), Expect = 1e-15 Identities = 63/168 (37%), Positives = 76/168 (45%), Gaps = 38/168 (22%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVG--- 190 V V V G V PG+ L GLN+AR L DGEQ+VVG Sbjct: 161 VTVDVTGKVRRPGIVVLDTGARVVDALEAAGGARRGVDLSGLNLARVLVDGEQVVVGEPA 220 Query: 191 -------LAPVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDS 243 P G P GP ++DLNTAT +L++ Sbjct: 221 PTPLGAAAVPTPGAP------------------------GGP----LVDLNTATQAELEA 252 Query: 244 LPGVGPVTAAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 LP VGPVTA AI++WR +G FTSVD+L EVDGIG A L +L V V Sbjct: 253 LPEVGPVTAQAILAWRDEHGGFTSVDELLEVDGIGDATLGQLAPFVTV 300 >tr|B5H760|B5H760_STRPR Tax_Id=457429 SubName: Full=DNA-binding protein;[Streptomyces pristinaespiralis ATCC 25486] Length = 356 Score = 88.2 bits (217), Expect = 1e-15 Identities = 60/158 (37%), Positives = 75/158 (47%), Gaps = 18/158 (11%) Query: 133 PVVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLA 192 P+VV V G V PG+ L GLN AR L+DGEQ+VVG Sbjct: 216 PIVVDVSGKVRRPGVLELPAGSRVADALEAAGGVKPGTDLSGLNRARVLSDGEQVVVG-G 274 Query: 193 PVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPVTA 252 P P GP + LN+ATVEQL++LPGVGPV A Sbjct: 275 PAPPAP------------GGAGAGTATGAATGP-----ISLNSATVEQLETLPGVGPVLA 317 Query: 253 AAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVR 290 I+ R NG F S+D+L +V+GIG R + LR+LVR Sbjct: 318 QHIIDHRMQNGGFRSIDELRDVNGIGDRRFEDLRNLVR 355 >tr|Q2JDK7|Q2JDK7_FRASC Tax_Id=106370 SubName: Full=Helix-hairpin-helix DNA-binding, class 1;[Frankia sp.] Length = 422 Score = 87.8 bits (216), Expect = 1e-15 Identities = 60/158 (37%), Positives = 72/158 (45%), Gaps = 9/158 (5%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAP 193 VVV V G V PG+ L T GL +AR L DGEQ++V P Sbjct: 274 VVVDVAGRVARPGVVRLPAGARVVDAIERAGGVLPGTDTTGLALARLLVDGEQVLVDGKP 333 Query: 194 VAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPVTAA 253 +P GP +DLN AT E+LD LPGVGPV A Sbjct: 334 GPARP----GTAAGQPAGTGLGSAGSTAATGP-----IDLNAATAEELDGLPGVGPVLAR 384 Query: 254 AIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 IV WR A+G F S +QLAEV G+G RL L L++V Sbjct: 385 RIVEWRTAHGPFRSPEQLAEVTGVGDKRLADLLPLLKV 422 >tr|D1BUZ0|D1BUZ0_9MICO Tax_Id=446471 SubName: Full=Competence protein ComEA helix-hairpin-helix repeat protein; Flags: Precursor;[Xylanimonas cellulosilytica DSM 15894] Length = 320 Score = 87.8 bits (216), Expect = 1e-15 Identities = 59/158 (37%), Positives = 74/158 (46%), Gaps = 15/158 (9%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAP 193 +VV VVG VH PGL TL +N+AR + DGEQ+ V P Sbjct: 178 LVVDVVGQVHHPGLVTLPAGSRVFDAVAAAGGATEGAELSAINLARPVVDGEQLRV---P 234 Query: 194 VAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPVTAA 253 G+ G + ++LNTA L++LPG+GP AA Sbjct: 235 APGE------------VVAAPVAPDGVPATGRSDDGRVNLNTADEATLETLPGIGPALAA 282 Query: 254 AIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 IV+WR NG F SVD+L EV GIGPA L K+R LV V Sbjct: 283 RIVAWRTDNGPFASVDELDEVSGIGPAMLAKVRDLVTV 320 >tr|C4E8E2|C4E8E2_STRRS Tax_Id=479432 SubName: Full=DNA uptake protein;[Streptosporangium roseum DSM 43021] Length = 259 Score = 87.0 bits (214), Expect = 2e-15 Identities = 63/159 (39%), Positives = 74/159 (46%), Gaps = 24/159 (15%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGL-A 192 V V V G V PG+ TL T LN+AR+L DGEQIVVG A Sbjct: 124 VTVHVTGKVRRPGVITLPTGSRITDAVQAAGGVRKGAATGPLNLARKLVDGEQIVVGAPA 183 Query: 193 PVAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPVTA 252 P A P P P VLDLNTAT EQL+ LPGVG V A Sbjct: 184 PAAAAP----------------------LMADPAPV-VLDLNTATPEQLEQLPGVGEVLA 220 Query: 253 AAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 IV +R +G F +V+QL EV GIG + ++R V V Sbjct: 221 RRIVEYRDGHGGFRTVEQLREVSGIGDRKYAEIREKVHV 259 >tr|B5HXE1|B5HXE1_9ACTO Tax_Id=463191 SubName: Full=DNA-binding protein;[Streptomyces sviceus ATCC 29083] Length = 367 Score = 87.0 bits (214), Expect = 2e-15 Identities = 64/159 (40%), Positives = 75/159 (47%), Gaps = 18/159 (11%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAP 193 +VV V G V PG+ L T LN AR L DGEQ+VVG P Sbjct: 224 IVVDVGGKVREPGIQRLPAGSRVADALKAAGGVRPGTNTDTLNRARFLVDGEQVVVG-GP 282 Query: 194 VAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGP--NPAEVLDLNTATVEQLDSLPGVGPVT 251 A P GP A + LNTATV+QLD+LPGVGPV Sbjct: 283 PAPAPA---------------PGTGGSVTGGPAGTAAAPVSLNTATVDQLDTLPGVGPVL 327 Query: 252 AAAIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVR 290 A IV +R +G F SVD+L EV+GIG R LR+LVR Sbjct: 328 AQHIVDYRTRHGGFRSVDELREVNGIGDRRFADLRNLVR 366 >tr|C4RNW4|C4RNW4_9ACTO Tax_Id=219305 SubName: Full=Competence protein comEA;[Micromonospora sp. ATCC 39149] Length = 255 Score = 86.3 bits (212), Expect = 4e-15 Identities = 57/158 (36%), Positives = 77/158 (48%), Gaps = 14/158 (8%) Query: 134 VVVSVVGLVHTPGLFTLAPXXXXXXXXXXXXXXXXXXXTIGLNMARQLADGEQIVVGLAP 193 +VV+V G V PGL ++ LN AR++ DGE I+VG+ Sbjct: 112 LVVAVAGKVRRPGLVRVSAGARVGDAVQAAGGALPGVDVALLNPARKVTDGELILVGVTA 171 Query: 194 VAGQPKRFXXXXXXXXXXXXXXXXXXXXXXGPNPAEVLDLNTATVEQLDSLPGVGPVTAA 253 GQP P PA +++LNTAT+ QLD+LPGVGPV A Sbjct: 172 PPGQPDAAPGQPAGAGP--------------PAPAGLINLNTATLAQLDTLPGVGPVLAQ 217 Query: 254 AIVSWRAANGKFTSVDQLAEVDGIGPARLQKLRSLVRV 291 I+ RA G F SV L +V+GIG +R ++L+ LV V Sbjct: 218 RILDHRARAGGFRSVGDLRQVEGIGDSRYEQLKELVTV 255 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.317 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 1,445,172,600 Number of extensions: 39090433 Number of successful extensions: 112082 Number of sequences better than 10.0: 2551 Number of HSP's gapped: 112288 Number of HSP's successfully gapped: 2623 Length of query: 291 Length of database: 3,846,993,858 Length adjustment: 136 Effective length of query: 155 Effective length of database: 2,313,566,250 Effective search space: 358602768750 Effective search space used: 358602768750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 80 (35.4 bits)