BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_4100 (621 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HQL5|B2HQL5_MYCMM Tax_Id=216594 (rho)SubName: Full=Transcri... 938 0.0 tr|A0PUL3|A0PUL3_MYCUA Tax_Id=362242 (rho)SubName: Full=Transcri... 931 0.0 tr|Q73X46|Q73X46_MYCPA Tax_Id=1770 (rho)SubName: Full=Rho;[Mycob... 791 0.0 sp|P66028|RHO_MYCTU Tax_Id=1773 (rho)RecName: Full=Transcription... 790 0.0 sp|P66029|RHO_MYCBO Tax_Id=1765 (rho)RecName: Full=Transcription... 790 0.0 tr|C6DU73|C6DU73_MYCTK Tax_Id=478434 SubName: Full=Transcription... 790 0.0 tr|C1AMU1|C1AMU1_MYCBT Tax_Id=561275 (rho)SubName: Full=Transcri... 790 0.0 tr|A5U1Z6|A5U1Z6_MYCTA Tax_Id=419947 (rho)SubName: Full=Transcri... 790 0.0 tr|A1KI85|A1KI85_MYCBP Tax_Id=410289 (rho)SubName: Full=Probable... 790 0.0 tr|A5WLX8|A5WLX8_MYCTF Tax_Id=336982 SubName: Full=Transcription... 790 0.0 tr|A4KGL8|A4KGL8_MYCTU Tax_Id=395095 SubName: Full=Transcription... 790 0.0 tr|A2VHJ3|A2VHJ3_MYCTU Tax_Id=348776 SubName: Full=Transcription... 790 0.0 tr|A0QCW4|A0QCW4_MYCA1 Tax_Id=243243 (rho)SubName: Full=Transcri... 778 0.0 tr|B8ZR29|B8ZR29_MYCLB Tax_Id=561304 (rho)SubName: Full=Transcri... 702 0.0 sp|P45835|RHO_MYCLE Tax_Id=1769 (rho)RecName: Full=Transcription... 701 0.0 tr|A1TD72|A1TD72_MYCVP Tax_Id=350058 SubName: Full=Transcription... 693 0.0 tr|A0R218|A0R218_MYCS2 Tax_Id=246196 (rho)SubName: Full=Transcri... 689 0.0 tr|Q1B536|Q1B536_MYCSS Tax_Id=164756 SubName: Full=Transcription... 689 0.0 tr|A3Q3C8|A3Q3C8_MYCSJ Tax_Id=164757 SubName: Full=Transcription... 689 0.0 tr|A1UK01|A1UK01_MYCSK Tax_Id=189918 SubName: Full=Transcription... 689 0.0 tr|A4T8L9|A4T8L9_MYCGI Tax_Id=350054 SubName: Full=Transcription... 674 0.0 tr|B1MLU7|B1MLU7_MYCA9 Tax_Id=561007 SubName: Full=Probable tran... 668 0.0 tr|Q5Z0Z4|Q5Z0Z4_NOCFA Tax_Id=37329 (rho)SubName: Full=Putative ... 663 0.0 tr|Q0SGN6|Q0SGN6_RHOSR Tax_Id=101510 SubName: Full=Transcription... 654 0.0 tr|D0L9H1|D0L9H1_GORB4 Tax_Id=526226 SubName: Full=Transcription... 653 0.0 tr|C1AW12|C1AW12_RHOOB Tax_Id=632772 (rho)SubName: Full=Transcri... 653 0.0 tr|C1A1Z2|C1A1Z2_RHOE4 Tax_Id=234621 (rho)SubName: Full=Transcri... 647 0.0 tr|C3JI49|C3JI49_RHOER Tax_Id=596309 (rho)SubName: Full=Transcri... 647 0.0 tr|C7MX54|C7MX54_SACVD Tax_Id=471857 SubName: Full=Transcription... 613 e-173 tr|C2AS02|C2AS02_TSUPA Tax_Id=521096 SubName: Full=Transcription... 609 e-172 tr|C6WHL1|C6WHL1_ACTMD Tax_Id=446462 SubName: Full=Transcription... 595 e-168 tr|C8XIA7|C8XIA7_NAKMY Tax_Id=479431 SubName: Full=Transcription... 582 e-164 tr|A4FN42|A4FN42_SACEN Tax_Id=405948 (rho1)SubName: Full=Putativ... 582 e-164 tr|C4LJM6|C4LJM6_CORK4 Tax_Id=645127 SubName: Full=Transcription... 579 e-163 tr|A4XAX8|A4XAX8_SALTO Tax_Id=369723 SubName: Full=Transcription... 575 e-162 tr|C0UBY4|C0UBY4_9ACTO Tax_Id=526225 SubName: Full=Transcription... 573 e-161 tr|A8L3U9|A8L3U9_FRASN Tax_Id=298653 SubName: Full=Transcription... 573 e-161 tr|A8M2K9|A8M2K9_SALAI Tax_Id=391037 SubName: Full=Transcription... 572 e-161 tr|Q2J6L8|Q2J6L8_FRASC Tax_Id=106370 SubName: Full=Transcription... 569 e-160 tr|C4RQ92|C4RQ92_9ACTO Tax_Id=219305 SubName: Full=Transcription... 569 e-160 tr|Q6NHU1|Q6NHU1_CORDI Tax_Id=1717 (rho)SubName: Full=Transcript... 569 e-160 tr|Q0RD98|Q0RD98_FRAAA Tax_Id=326424 (rho)SubName: Full=Transcri... 563 e-158 tr|C4DMQ6|C4DMQ6_9ACTO Tax_Id=446470 SubName: Full=Transcription... 559 e-157 tr|Q8FQ32|Q8FQ32_COREF Tax_Id=152794 SubName: Full=Putative tran... 556 e-156 tr|C8NKZ7|C8NKZ7_COREF Tax_Id=196164 (rho)SubName: Full=Transcri... 556 e-156 tr|A4QDG0|A4QDG0_CORGB Tax_Id=340322 SubName: Full=Putative unch... 555 e-156 tr|Q8NR58|Q8NR58_CORGL Tax_Id=1718 (rho)SubName: Full=Transcript... 553 e-155 tr|C5VE12|C5VE12_9CORY Tax_Id=553207 (rho)SubName: Full=Transcri... 553 e-155 tr|B5HMS3|B5HMS3_9ACTO Tax_Id=463191 SubName: Full=Transcription... 551 e-154 tr|C2BQU0|C2BQU0_9CORY Tax_Id=525264 (rho)SubName: Full=Transcri... 548 e-153 >tr|B2HQL5|B2HQL5_MYCMM Tax_Id=216594 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium marinum] Length = 621 Score = 938 bits (2425), Expect = 0.0 Identities = 504/621 (81%), Positives = 505/621 (81%) Query: 1 VTDTDLITAGEXXXXXXXXXXXXXXXXXLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 +TDTDLITAGE LNTAAPTGALATMVLPELRALANQVGVKGTSG Sbjct: 1 MTDTDLITAGESTDADKKSDSVTKDSSDLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 Query: 61 MRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNEATKDAPQQEQNAXX 120 MRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNEATKDAPQQEQNA Sbjct: 61 MRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNEATKDAPQQEQNASS 120 Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKRGKRAAGGDADNNQKAPEKAQEDAKTDX 180 PDKRGKRAAGGDADNNQKAPEKAQEDAKTD Sbjct: 121 GDTVRRERRRSSRDSGTSSRDGADSAGGSPDKRGKRAAGGDADNNQKAPEKAQEDAKTDG 180 Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELREDD 240 AELREDD Sbjct: 181 GAAESGGDQGAGQQGSGGQQSRGEDDGEGRQGRRGRRFRDRRRRGERSGDGSDAELREDD 240 Query: 241 VVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREGEQ 300 VVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREGEQ Sbjct: 241 VVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREGEQ 300 Query: 301 PNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXXVIDLIM 360 PNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQ VIDLIM Sbjct: 301 PNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQRLRLETTTERLTTRVIDLIM 360 Query: 361 PIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVKGE 420 PIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVKGE Sbjct: 361 PIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVKGE 420 Query: 421 VIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILS 480 VIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILS Sbjct: 421 VIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILS 480 Query: 481 GGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLD 540 GGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLD Sbjct: 481 GGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLD 540 Query: 541 RKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKT 600 RKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKT Sbjct: 541 RKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKT 600 Query: 601 KNNYEFLVQVSKTTPGNMDND 621 KNNYEFLVQVSKTTPGNMDND Sbjct: 601 KNNYEFLVQVSKTTPGNMDND 621 >tr|A0PUL3|A0PUL3_MYCUA Tax_Id=362242 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium ulcerans] Length = 621 Score = 931 bits (2406), Expect = 0.0 Identities = 500/621 (80%), Positives = 501/621 (80%) Query: 1 VTDTDLITAGEXXXXXXXXXXXXXXXXXLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 +TDTDLITAGE LNTAAPTGALATMVLPELRALANQVGVKGTSG Sbjct: 1 MTDTDLITAGESTDADKKSDSVTKDSSDLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 Query: 61 MRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNEATKDAPQQEQNAXX 120 MRKNELIAAIQEFRDR NGTPAAAEPT DSGEQKSSASTEAPAVNEATKDAPQQEQNA Sbjct: 61 MRKNELIAAIQEFRDRTNGTPAAAEPTPDSGEQKSSASTEAPAVNEATKDAPQQEQNASS 120 Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKRGKRAAGGDADNNQKAPEKAQEDAKTDX 180 PDKRGKRAAGGDADNNQKAPEKAQEDAK D Sbjct: 121 GDTVRRERRRSSRDSETSSRDGADSAGESPDKRGKRAAGGDADNNQKAPEKAQEDAKIDG 180 Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELREDD 240 AELREDD Sbjct: 181 GAAESGGDQGAGQQGSGGQQSRGEDDGEGRQGRRGRRFRDRRRRGERSGDGSDAELREDD 240 Query: 241 VVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREGEQ 300 VVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREGEQ Sbjct: 241 VVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREGEQ 300 Query: 301 PNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXXVIDLIM 360 PNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQ VIDLIM Sbjct: 301 PNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQRLRLETTTERLTTRVIDLIM 360 Query: 361 PIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVKGE 420 PIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVKGE Sbjct: 361 PIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVKGE 420 Query: 421 VIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILS 480 VIASTFDRPPSDHTS AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILS Sbjct: 421 VIASTFDRPPSDHTSAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILS 480 Query: 481 GGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLD 540 GGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLD Sbjct: 481 GGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLD 540 Query: 541 RKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKT 600 RKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKT Sbjct: 541 RKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKT 600 Query: 601 KNNYEFLVQVSKTTPGNMDND 621 KNNYEFLVQVSKTTPGNMDND Sbjct: 601 KNNYEFLVQVSKTTPGNMDND 621 >tr|Q73X46|Q73X46_MYCPA Tax_Id=1770 (rho)SubName: Full=Rho;[Mycobacterium paratuberculosis] Length = 620 Score = 791 bits (2042), Expect = 0.0 Identities = 440/629 (69%), Positives = 455/629 (72%), Gaps = 17/629 (2%) Query: 1 VTDTDLITAGEXXXXXXXXXXXXXXXXXLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 +TDTDL TAGE T AP GAL TMVLPELRALANQVGVKGTSG Sbjct: 1 MTDTDLFTAGENTDANQLSTAVTTDTPDAKTHAPVGALTTMVLPELRALANQVGVKGTSG 60 Query: 61 MRKNELIAAIQEFRDRANGTPAA-----AEPTSDSGEQKSSASTEAPAVNEATKDAPQQE 115 MRKNELIAAI+E R +ANG A AEP DSG+ P +A D Sbjct: 61 MRKNELIAAIKEVRGQANGAAPAEQANGAEPAEDSGK---------PDAKDAKDDTTPDT 111 Query: 116 QNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKRGKRAAG---GDADNNQKAPEKA 172 ++A R AAG DAD E++ Sbjct: 112 KDANDHTGAQSAAEAPAPSEQNGATAEAPRRERRSASRDAGAAGRGSDDADRETDGREQS 171 Query: 173 QEDAKTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 232 ++D++ Sbjct: 172 KQDSREQSKQDGGDQDQQSSGGQQGRGSNQQDDDGEGRQGRRGRRFRDRRRRGERSGEGG 231 Query: 233 XAELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAV 292 AELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAV Sbjct: 232 DAELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAV 291 Query: 293 RVPREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXX 352 RVP++GEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQ Sbjct: 292 RVPKDGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLT 351 Query: 353 XXVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTD 412 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTD Sbjct: 352 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTD 411 Query: 413 MTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 472 M RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS Sbjct: 412 MQRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 471 Query: 473 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 532 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT Sbjct: 472 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 531 Query: 533 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 592 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDL Sbjct: 532 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDL 591 Query: 593 LMSQLRKTKNNYEFLVQVSKTTPGNMDND 621 LMSQLRKTKNNYEFLVQVSKTTPG MDND Sbjct: 592 LMSQLRKTKNNYEFLVQVSKTTPGAMDND 620 >sp|P66028|RHO_MYCTU Tax_Id=1773 (rho)RecName: Full=Transcription termination factor rho; EC=3.6.1.-; AltName: Full=ATP-dependent helicase rho;[Mycobacterium tuberculosis] Length = 602 Score = 790 bits (2040), Expect = 0.0 Identities = 438/623 (70%), Positives = 457/623 (73%), Gaps = 23/623 (3%) Query: 1 VTDTDLITAGEXXXXXXXXXXXXXXXXXLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 +TDTDLITAGE LN P G+LATMVLPELRALAN+ GVKGTSG Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPD-LNADEPAGSLATMVLPELRALANRAGVKGTSG 59 Query: 61 MRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNEATKDAPQQEQNAXX 120 MRKNELIAAI+E R +ANG PA + + S+EAPA Q + + Sbjct: 60 MRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQ 119 Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKRGKRA--AGGDADNNQKAPEKAQEDAKT 178 P G+RA A D DN Q Q+DAKT Sbjct: 120 VRPERRSATREAG----------------PSGSGERAGTAADDTDNRQGG----QQDAKT 159 Query: 179 DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELRE 238 + AELRE Sbjct: 160 EERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELRE 219 Query: 239 DDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREG 298 DDVVQPVAGILDVLDNYAFVRTSGYL GPHDVYVSMNMVRKNG+RRGDAVTGAVRVP+EG Sbjct: 220 DDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEG 279 Query: 299 EQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXXVIDL 358 EQPNQRQKFNPLVRLDS+NGGSVEDAKKRPEFGKLTPLYPNQ VIDL Sbjct: 280 EQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDL 339 Query: 359 IMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVK 418 IMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEEVTDM RSVK Sbjct: 340 IMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVK 399 Query: 419 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 478 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI Sbjct: 400 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 459 Query: 479 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 538 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK Sbjct: 460 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 519 Query: 539 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 598 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR Sbjct: 520 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 579 Query: 599 KTKNNYEFLVQVSKTTPGNMDND 621 KTKNNYEFLVQVSKTTPG+MD+D Sbjct: 580 KTKNNYEFLVQVSKTTPGSMDSD 602 >sp|P66029|RHO_MYCBO Tax_Id=1765 (rho)RecName: Full=Transcription termination factor rho; EC=3.6.1.-; AltName: Full=ATP-dependent helicase rho;[Mycobacterium bovis] Length = 602 Score = 790 bits (2040), Expect = 0.0 Identities = 438/623 (70%), Positives = 457/623 (73%), Gaps = 23/623 (3%) Query: 1 VTDTDLITAGEXXXXXXXXXXXXXXXXXLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 +TDTDLITAGE LN P G+LATMVLPELRALAN+ GVKGTSG Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPD-LNADEPAGSLATMVLPELRALANRAGVKGTSG 59 Query: 61 MRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNEATKDAPQQEQNAXX 120 MRKNELIAAI+E R +ANG PA + + S+EAPA Q + + Sbjct: 60 MRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQ 119 Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKRGKRA--AGGDADNNQKAPEKAQEDAKT 178 P G+RA A D DN Q Q+DAKT Sbjct: 120 VRPERRSATREAG----------------PSGSGERAGTAADDTDNRQGG----QQDAKT 159 Query: 179 DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELRE 238 + AELRE Sbjct: 160 EERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELRE 219 Query: 239 DDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREG 298 DDVVQPVAGILDVLDNYAFVRTSGYL GPHDVYVSMNMVRKNG+RRGDAVTGAVRVP+EG Sbjct: 220 DDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEG 279 Query: 299 EQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXXVIDL 358 EQPNQRQKFNPLVRLDS+NGGSVEDAKKRPEFGKLTPLYPNQ VIDL Sbjct: 280 EQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDL 339 Query: 359 IMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVK 418 IMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEEVTDM RSVK Sbjct: 340 IMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVK 399 Query: 419 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 478 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI Sbjct: 400 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 459 Query: 479 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 538 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK Sbjct: 460 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 519 Query: 539 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 598 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR Sbjct: 520 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 579 Query: 599 KTKNNYEFLVQVSKTTPGNMDND 621 KTKNNYEFLVQVSKTTPG+MD+D Sbjct: 580 KTKNNYEFLVQVSKTTPGSMDSD 602 >tr|C6DU73|C6DU73_MYCTK Tax_Id=478434 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis] Length = 602 Score = 790 bits (2040), Expect = 0.0 Identities = 438/623 (70%), Positives = 457/623 (73%), Gaps = 23/623 (3%) Query: 1 VTDTDLITAGEXXXXXXXXXXXXXXXXXLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 +TDTDLITAGE LN P G+LATMVLPELRALAN+ GVKGTSG Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPD-LNADEPAGSLATMVLPELRALANRAGVKGTSG 59 Query: 61 MRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNEATKDAPQQEQNAXX 120 MRKNELIAAI+E R +ANG PA + + S+EAPA Q + + Sbjct: 60 MRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQ 119 Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKRGKRA--AGGDADNNQKAPEKAQEDAKT 178 P G+RA A D DN Q Q+DAKT Sbjct: 120 VRPERRSATREAG----------------PSGSGERAGTAADDTDNRQGG----QQDAKT 159 Query: 179 DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELRE 238 + AELRE Sbjct: 160 EERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELRE 219 Query: 239 DDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREG 298 DDVVQPVAGILDVLDNYAFVRTSGYL GPHDVYVSMNMVRKNG+RRGDAVTGAVRVP+EG Sbjct: 220 DDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEG 279 Query: 299 EQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXXVIDL 358 EQPNQRQKFNPLVRLDS+NGGSVEDAKKRPEFGKLTPLYPNQ VIDL Sbjct: 280 EQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDL 339 Query: 359 IMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVK 418 IMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEEVTDM RSVK Sbjct: 340 IMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVK 399 Query: 419 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 478 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI Sbjct: 400 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 459 Query: 479 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 538 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK Sbjct: 460 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 519 Query: 539 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 598 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR Sbjct: 520 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 579 Query: 599 KTKNNYEFLVQVSKTTPGNMDND 621 KTKNNYEFLVQVSKTTPG+MD+D Sbjct: 580 KTKNNYEFLVQVSKTTPGSMDSD 602 >tr|C1AMU1|C1AMU1_MYCBT Tax_Id=561275 (rho)SubName: Full=Transcription termination factor;[Mycobacterium bovis] Length = 602 Score = 790 bits (2040), Expect = 0.0 Identities = 438/623 (70%), Positives = 457/623 (73%), Gaps = 23/623 (3%) Query: 1 VTDTDLITAGEXXXXXXXXXXXXXXXXXLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 +TDTDLITAGE LN P G+LATMVLPELRALAN+ GVKGTSG Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPD-LNADEPAGSLATMVLPELRALANRAGVKGTSG 59 Query: 61 MRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNEATKDAPQQEQNAXX 120 MRKNELIAAI+E R +ANG PA + + S+EAPA Q + + Sbjct: 60 MRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQ 119 Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKRGKRA--AGGDADNNQKAPEKAQEDAKT 178 P G+RA A D DN Q Q+DAKT Sbjct: 120 VRPERRSATREAG----------------PSGSGERAGTAADDTDNRQGG----QQDAKT 159 Query: 179 DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELRE 238 + AELRE Sbjct: 160 EERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELRE 219 Query: 239 DDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREG 298 DDVVQPVAGILDVLDNYAFVRTSGYL GPHDVYVSMNMVRKNG+RRGDAVTGAVRVP+EG Sbjct: 220 DDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEG 279 Query: 299 EQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXXVIDL 358 EQPNQRQKFNPLVRLDS+NGGSVEDAKKRPEFGKLTPLYPNQ VIDL Sbjct: 280 EQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDL 339 Query: 359 IMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVK 418 IMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEEVTDM RSVK Sbjct: 340 IMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVK 399 Query: 419 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 478 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI Sbjct: 400 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 459 Query: 479 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 538 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK Sbjct: 460 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 519 Query: 539 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 598 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR Sbjct: 520 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 579 Query: 599 KTKNNYEFLVQVSKTTPGNMDND 621 KTKNNYEFLVQVSKTTPG+MD+D Sbjct: 580 KTKNNYEFLVQVSKTTPGSMDSD 602 >tr|A5U1Z6|A5U1Z6_MYCTA Tax_Id=419947 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium tuberculosis] Length = 602 Score = 790 bits (2040), Expect = 0.0 Identities = 438/623 (70%), Positives = 457/623 (73%), Gaps = 23/623 (3%) Query: 1 VTDTDLITAGEXXXXXXXXXXXXXXXXXLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 +TDTDLITAGE LN P G+LATMVLPELRALAN+ GVKGTSG Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPD-LNADEPAGSLATMVLPELRALANRAGVKGTSG 59 Query: 61 MRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNEATKDAPQQEQNAXX 120 MRKNELIAAI+E R +ANG PA + + S+EAPA Q + + Sbjct: 60 MRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQ 119 Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKRGKRA--AGGDADNNQKAPEKAQEDAKT 178 P G+RA A D DN Q Q+DAKT Sbjct: 120 VRPERRSATREAG----------------PSGSGERAGTAADDTDNRQGG----QQDAKT 159 Query: 179 DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELRE 238 + AELRE Sbjct: 160 EERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELRE 219 Query: 239 DDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREG 298 DDVVQPVAGILDVLDNYAFVRTSGYL GPHDVYVSMNMVRKNG+RRGDAVTGAVRVP+EG Sbjct: 220 DDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEG 279 Query: 299 EQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXXVIDL 358 EQPNQRQKFNPLVRLDS+NGGSVEDAKKRPEFGKLTPLYPNQ VIDL Sbjct: 280 EQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDL 339 Query: 359 IMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVK 418 IMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEEVTDM RSVK Sbjct: 340 IMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVK 399 Query: 419 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 478 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI Sbjct: 400 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 459 Query: 479 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 538 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK Sbjct: 460 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 519 Query: 539 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 598 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR Sbjct: 520 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 579 Query: 599 KTKNNYEFLVQVSKTTPGNMDND 621 KTKNNYEFLVQVSKTTPG+MD+D Sbjct: 580 KTKNNYEFLVQVSKTTPGSMDSD 602 >tr|A1KI85|A1KI85_MYCBP Tax_Id=410289 (rho)SubName: Full=Probable transcription termination factor rho homolog;[Mycobacterium bovis] Length = 602 Score = 790 bits (2040), Expect = 0.0 Identities = 438/623 (70%), Positives = 457/623 (73%), Gaps = 23/623 (3%) Query: 1 VTDTDLITAGEXXXXXXXXXXXXXXXXXLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 +TDTDLITAGE LN P G+LATMVLPELRALAN+ GVKGTSG Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPD-LNADEPAGSLATMVLPELRALANRAGVKGTSG 59 Query: 61 MRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNEATKDAPQQEQNAXX 120 MRKNELIAAI+E R +ANG PA + + S+EAPA Q + + Sbjct: 60 MRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQ 119 Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKRGKRA--AGGDADNNQKAPEKAQEDAKT 178 P G+RA A D DN Q Q+DAKT Sbjct: 120 VRPERRSATREAG----------------PSGSGERAGTAADDTDNRQGG----QQDAKT 159 Query: 179 DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELRE 238 + AELRE Sbjct: 160 EERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELRE 219 Query: 239 DDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREG 298 DDVVQPVAGILDVLDNYAFVRTSGYL GPHDVYVSMNMVRKNG+RRGDAVTGAVRVP+EG Sbjct: 220 DDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEG 279 Query: 299 EQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXXVIDL 358 EQPNQRQKFNPLVRLDS+NGGSVEDAKKRPEFGKLTPLYPNQ VIDL Sbjct: 280 EQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDL 339 Query: 359 IMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVK 418 IMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEEVTDM RSVK Sbjct: 340 IMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVK 399 Query: 419 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 478 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI Sbjct: 400 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 459 Query: 479 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 538 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK Sbjct: 460 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 519 Query: 539 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 598 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR Sbjct: 520 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 579 Query: 599 KTKNNYEFLVQVSKTTPGNMDND 621 KTKNNYEFLVQVSKTTPG+MD+D Sbjct: 580 KTKNNYEFLVQVSKTTPGSMDSD 602 >tr|A5WLX8|A5WLX8_MYCTF Tax_Id=336982 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis] Length = 602 Score = 790 bits (2040), Expect = 0.0 Identities = 438/623 (70%), Positives = 457/623 (73%), Gaps = 23/623 (3%) Query: 1 VTDTDLITAGEXXXXXXXXXXXXXXXXXLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 +TDTDLITAGE LN P G+LATMVLPELRALAN+ GVKGTSG Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPD-LNADEPAGSLATMVLPELRALANRAGVKGTSG 59 Query: 61 MRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNEATKDAPQQEQNAXX 120 MRKNELIAAI+E R +ANG PA + + S+EAPA Q + + Sbjct: 60 MRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQ 119 Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKRGKRA--AGGDADNNQKAPEKAQEDAKT 178 P G+RA A D DN Q Q+DAKT Sbjct: 120 VRPERRSATREAG----------------PSGSGERAGTAADDTDNRQGG----QQDAKT 159 Query: 179 DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELRE 238 + AELRE Sbjct: 160 EERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELRE 219 Query: 239 DDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREG 298 DDVVQPVAGILDVLDNYAFVRTSGYL GPHDVYVSMNMVRKNG+RRGDAVTGAVRVP+EG Sbjct: 220 DDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEG 279 Query: 299 EQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXXVIDL 358 EQPNQRQKFNPLVRLDS+NGGSVEDAKKRPEFGKLTPLYPNQ VIDL Sbjct: 280 EQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDL 339 Query: 359 IMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVK 418 IMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEEVTDM RSVK Sbjct: 340 IMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVK 399 Query: 419 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 478 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI Sbjct: 400 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 459 Query: 479 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 538 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK Sbjct: 460 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 519 Query: 539 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 598 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR Sbjct: 520 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 579 Query: 599 KTKNNYEFLVQVSKTTPGNMDND 621 KTKNNYEFLVQVSKTTPG+MD+D Sbjct: 580 KTKNNYEFLVQVSKTTPGSMDSD 602 >tr|A4KGL8|A4KGL8_MYCTU Tax_Id=395095 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis str. Haarlem] Length = 602 Score = 790 bits (2040), Expect = 0.0 Identities = 438/623 (70%), Positives = 457/623 (73%), Gaps = 23/623 (3%) Query: 1 VTDTDLITAGEXXXXXXXXXXXXXXXXXLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 +TDTDLITAGE LN P G+LATMVLPELRALAN+ GVKGTSG Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPD-LNADEPAGSLATMVLPELRALANRAGVKGTSG 59 Query: 61 MRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNEATKDAPQQEQNAXX 120 MRKNELIAAI+E R +ANG PA + + S+EAPA Q + + Sbjct: 60 MRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQ 119 Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKRGKRA--AGGDADNNQKAPEKAQEDAKT 178 P G+RA A D DN Q Q+DAKT Sbjct: 120 VRPERRSATREAG----------------PSGSGERAGTAADDTDNRQGG----QQDAKT 159 Query: 179 DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELRE 238 + AELRE Sbjct: 160 EERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELRE 219 Query: 239 DDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREG 298 DDVVQPVAGILDVLDNYAFVRTSGYL GPHDVYVSMNMVRKNG+RRGDAVTGAVRVP+EG Sbjct: 220 DDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEG 279 Query: 299 EQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXXVIDL 358 EQPNQRQKFNPLVRLDS+NGGSVEDAKKRPEFGKLTPLYPNQ VIDL Sbjct: 280 EQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDL 339 Query: 359 IMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVK 418 IMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEEVTDM RSVK Sbjct: 340 IMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVK 399 Query: 419 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 478 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI Sbjct: 400 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 459 Query: 479 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 538 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK Sbjct: 460 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 519 Query: 539 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 598 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR Sbjct: 520 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 579 Query: 599 KTKNNYEFLVQVSKTTPGNMDND 621 KTKNNYEFLVQVSKTTPG+MD+D Sbjct: 580 KTKNNYEFLVQVSKTTPGSMDSD 602 >tr|A2VHJ3|A2VHJ3_MYCTU Tax_Id=348776 SubName: Full=Transcription termination factor rho;[Mycobacterium tuberculosis C] Length = 602 Score = 790 bits (2040), Expect = 0.0 Identities = 438/623 (70%), Positives = 457/623 (73%), Gaps = 23/623 (3%) Query: 1 VTDTDLITAGEXXXXXXXXXXXXXXXXXLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 +TDTDLITAGE LN P G+LATMVLPELRALAN+ GVKGTSG Sbjct: 1 MTDTDLITAGESTDGKPSDAAATDPPD-LNADEPAGSLATMVLPELRALANRAGVKGTSG 59 Query: 61 MRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNEATKDAPQQEQNAXX 120 MRKNELIAAI+E R +ANG PA + + S+EAPA Q + + Sbjct: 60 MRKNELIAAIEEIRRQANGAPAVDRSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQ 119 Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKRGKRA--AGGDADNNQKAPEKAQEDAKT 178 P G+RA A D DN Q Q+DAKT Sbjct: 120 VRPERRSATREAG----------------PSGSGERAGTAADDTDNRQGG----QQDAKT 159 Query: 179 DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELRE 238 + AELRE Sbjct: 160 EERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRFRDRRRRGERSGDGAEAELRE 219 Query: 239 DDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREG 298 DDVVQPVAGILDVLDNYAFVRTSGYL GPHDVYVSMNMVRKNG+RRGDAVTGAVRVP+EG Sbjct: 220 DDVVQPVAGILDVLDNYAFVRTSGYLPGPHDVYVSMNMVRKNGMRRGDAVTGAVRVPKEG 279 Query: 299 EQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXXVIDL 358 EQPNQRQKFNPLVRLDS+NGGSVEDAKKRPEFGKLTPLYPNQ VIDL Sbjct: 280 EQPNQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETSTERLTTRVIDL 339 Query: 359 IMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSVK 418 IMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEEVTDM RSVK Sbjct: 340 IMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTDMQRSVK 399 Query: 419 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 478 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI Sbjct: 400 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 459 Query: 479 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 538 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK Sbjct: 460 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELK 519 Query: 539 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 598 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR Sbjct: 520 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLR 579 Query: 599 KTKNNYEFLVQVSKTTPGNMDND 621 KTKNNYEFLVQVSKTTPG+MD+D Sbjct: 580 KTKNNYEFLVQVSKTTPGSMDSD 602 >tr|A0QCW4|A0QCW4_MYCA1 Tax_Id=243243 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium avium] Length = 596 Score = 778 bits (2009), Expect = 0.0 Identities = 428/596 (71%), Positives = 441/596 (73%), Gaps = 14/596 (2%) Query: 31 TAAPTGALATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPAA-----AE 85 T AP GAL TMVLPELRALANQVGVKGTSGMRKNELIAAI+E R +ANG A AE Sbjct: 10 THAPVGALTTMVLPELRALANQVGVKGTSGMRKNELIAAIKEVRGQANGAAPAEQANGAE 69 Query: 86 PTSDSGEQKSSASTEAPAVNEATKDAPQQEQNAXXXXXXXXXXXXXXXXXXXXXXXXXXX 145 P DSG+ P +A D ++A Sbjct: 70 PAEDSGK---------PDAKDAKDDTTPDTKDANDHTGAQSAAEAPAQNGATAEAPRRER 120 Query: 146 XXXXPDKRGKRAAGGDADNNQKAPEKAQEDAKTDXXXXXXXXXXXXXXXXXXXXXXXXXX 205 D DAD E+ ++D++ Sbjct: 121 RSASRDAGAAGRGNDDADRETDGREQNKQDSREQSKQDGGDQDQQSSGGQQGRGSNQQDD 180 Query: 206 XXXXXXXXXXXXXXXXXXXXXXXXXXXXAELREDDVVQPVAGILDVLDNYAFVRTSGYLA 265 AELREDDVVQPVAGILDVLDNYAFVRTSGYLA Sbjct: 181 DGEGRQGRRGRRFRDRRRRGERSGEGGDAELREDDVVQPVAGILDVLDNYAFVRTSGYLA 240 Query: 266 GPHDVYVSMNMVRKNGLRRGDAVTGAVRVPREGEQPNQRQKFNPLVRLDSVNGGSVEDAK 325 GPHDVYVSMNMVRKNGLRRGDAVTGAVRVP++GEQPNQRQKFNPLVRLDSVNGGSVEDAK Sbjct: 241 GPHDVYVSMNMVRKNGLRRGDAVTGAVRVPKDGEQPNQRQKFNPLVRLDSVNGGSVEDAK 300 Query: 326 KRPEFGKLTPLYPNQXXXXXXXXXXXXXXVIDLIMPIGKGQRALIVSPPKAGKTTILQDI 385 KRPEFGKLTPLYPNQ VIDLIMPIGKGQRALIVSPPKAGKTTILQDI Sbjct: 301 KRPEFGKLTPLYPNQRLRLETTPDRLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDI 360 Query: 386 ANAITKNNPECHLMVVLVDERPEEVTDMTRSVKGEVIASTFDRPPSDHTSVAELAIERAK 445 ANAITKNNPECHLMVVLVDERPEEVTDM RSVKGEVIASTFDRPPSDHTSVAELAIERAK Sbjct: 361 ANAITKNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAK 420 Query: 446 RLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGG 505 RLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGG Sbjct: 421 RLVEQGKDVVVLLDSITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGG 480 Query: 506 SLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELL 565 SLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELL Sbjct: 481 SLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELL 540 Query: 566 LSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGNMDND 621 LSPDEF IVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPG MDND Sbjct: 541 LSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTTPGAMDND 596 >tr|B8ZR29|B8ZR29_MYCLB Tax_Id=561304 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium leprae] Length = 610 Score = 702 bits (1811), Expect = 0.0 Identities = 362/388 (93%), Positives = 368/388 (94%) Query: 234 AELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVR 293 AELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSM+MVRKNGLRRGDAVTGAVR Sbjct: 223 AELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVR 282 Query: 294 VPREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXX 353 VPREGEQ +QRQKFNPLVRLDS+NGGSVEDAKKRPEFGKLTPLYPNQ Sbjct: 283 VPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTT 342 Query: 354 XVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDM 413 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NN ECHLMVVLVDERPEEVTDM Sbjct: 343 RVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDM 402 Query: 414 TRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASP 473 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASP Sbjct: 403 QRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASP 462 Query: 474 ASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTG 533 ASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGD VIFEEFKGTG Sbjct: 463 ASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTG 522 Query: 534 NAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLL 593 NAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDLL Sbjct: 523 NAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLL 582 Query: 594 MSQLRKTKNNYEFLVQVSKTTPGNMDND 621 MSQLRKTK NYEFLVQVSKTTPG+MD+D Sbjct: 583 MSQLRKTKTNYEFLVQVSKTTPGSMDDD 610 Score = 95.5 bits (236), Expect = 2e-17 Identities = 56/109 (51%), Positives = 67/109 (61%), Gaps = 3/109 (2%) Query: 1 VTDTDLITAGEXXXXXXXXXXXXXXXXXLNTAAPT---GALATMVLPELRALANQVGVKG 57 +T+TDLIT GE + A T G+L+TMVLPELRALANQ GVKG Sbjct: 1 MTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 Query: 58 TSGMRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNE 106 TSGMRK+ELIAAI+E R +ANGT P+ D G ++ STEA A E Sbjct: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQE 109 >sp|P45835|RHO_MYCLE Tax_Id=1769 (rho)RecName: Full=Transcription termination factor rho; EC=3.6.1.-; AltName: Full=ATP-dependent helicase rho;[Mycobacterium leprae] Length = 610 Score = 701 bits (1808), Expect = 0.0 Identities = 361/388 (93%), Positives = 368/388 (94%) Query: 234 AELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVR 293 AELR+DDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSM+MVRKNGLRRGDAVTGAVR Sbjct: 223 AELRQDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVR 282 Query: 294 VPREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXX 353 VPREGEQ +QRQKFNPLVRLDS+NGGSVEDAKKRPEFGKLTPLYPNQ Sbjct: 283 VPREGEQGHQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLETTPDRLTT 342 Query: 354 XVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDM 413 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NN ECHLMVVLVDERPEEVTDM Sbjct: 343 RVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDM 402 Query: 414 TRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASP 473 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASP Sbjct: 403 QRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASP 462 Query: 474 ASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTG 533 ASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGD VIFEEFKGTG Sbjct: 463 ASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTG 522 Query: 534 NAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLL 593 NAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEF IVHKLRRVLSGLDSHQAIDLL Sbjct: 523 NAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLL 582 Query: 594 MSQLRKTKNNYEFLVQVSKTTPGNMDND 621 MSQLRKTK NYEFLVQVSKTTPG+MD+D Sbjct: 583 MSQLRKTKTNYEFLVQVSKTTPGSMDDD 610 Score = 95.5 bits (236), Expect = 2e-17 Identities = 56/109 (51%), Positives = 67/109 (61%), Gaps = 3/109 (2%) Query: 1 VTDTDLITAGEXXXXXXXXXXXXXXXXXLNTAAPT---GALATMVLPELRALANQVGVKG 57 +T+TDLIT GE + A T G+L+TMVLPELRALANQ GVKG Sbjct: 1 MTETDLITVGENTDDTELTNAVTTDTPDVKATAATVSLGSLSTMVLPELRALANQAGVKG 60 Query: 58 TSGMRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNE 106 TSGMRK+ELIAAI+E R +ANGT P+ D G ++ STEA A E Sbjct: 61 TSGMRKSELIAAIEECRGQANGTSVNDGPSRDHGGSATAISTEALAAQE 109 >tr|A1TD72|A1TD72_MYCVP Tax_Id=350058 SubName: Full=Transcription termination factor Rho;[Mycobacterium vanbaalenii] Length = 684 Score = 693 bits (1788), Expect = 0.0 Identities = 355/387 (91%), Positives = 363/387 (93%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGP+DVYVSMNMVRKNGLRRGDAVTGAVRV Sbjct: 298 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAVRV 357 Query: 295 PREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXX 354 P++GEQ NQRQKFNPLVRLDSVNGG VE+AKKRPEF KLTPLYPN Sbjct: 358 PKDGEQSNQRQKFNPLVRLDSVNGGPVEEAKKRPEFQKLTPLYPNTRLRLETSSDKLTTR 417 Query: 355 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMT 414 VIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAIT+NNPECHLMVVLVDERPEEVTDM Sbjct: 418 VIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERPEEVTDMQ 477 Query: 415 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 474 RSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA Sbjct: 478 RSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 537 Query: 475 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 534 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN Sbjct: 538 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 597 Query: 535 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 594 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFA+VHKLRRVLSGLD HQAIDLLM Sbjct: 598 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAVVHKLRRVLSGLDPHQAIDLLM 657 Query: 595 SQLRKTKNNYEFLVQVSKTTPGNMDND 621 SQLRKTKNNYEFLVQVSK TPG +DND Sbjct: 658 SQLRKTKNNYEFLVQVSKNTPGGVDND 684 Score = 80.5 bits (197), Expect = 6e-13 Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 31 TAAPTGALATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPAAAEPTSDS 90 T A GAL ++VLPELRA+A ++GV+G SGMRK+ELIAAI+E R ANG PAA T+++ Sbjct: 48 TRARRGALTSLVLPELRAMAKEIGVEGASGMRKSELIAAIRERRGEANGKPAAKSDTAEA 107 Query: 91 GEQKSSASTEAPAVNEA 107 S T APA + A Sbjct: 108 TAAAPSGDTSAPAGDTA 124 >tr|A0R218|A0R218_MYCS2 Tax_Id=246196 (rho)SubName: Full=Transcription termination factor Rho;[Mycobacterium smegmatis] Length = 664 Score = 689 bits (1779), Expect = 0.0 Identities = 357/389 (91%), Positives = 364/389 (93%), Gaps = 2/389 (0%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGP+DVYVSMNMVRKNGLRRGDAVTGAVRV Sbjct: 276 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAVRV 335 Query: 295 PREGEQ--PNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXX 352 PREG+ NQRQKFNPLVRLD+VNGGSVEDAKKRPEFGKLTPLYPN+ Sbjct: 336 PREGDSGGQNQRQKFNPLVRLDTVNGGSVEDAKKRPEFGKLTPLYPNERLRLETSPERLS 395 Query: 353 XXVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTD 412 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIT+NNPECHLMVVLVDERPEEVTD Sbjct: 396 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNPECHLMVVLVDERPEEVTD 455 Query: 413 MTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 472 M RSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS Sbjct: 456 MQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 515 Query: 473 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 532 PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFKGT Sbjct: 516 PASGRILSGGVDSTALYPPKRFLGAARNIEHGGSLTIIATAMVETGSTGDTVIFEEFKGT 575 Query: 533 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 592 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL Sbjct: 576 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 635 Query: 593 LMSQLRKTKNNYEFLVQVSKTTPGNMDND 621 L+SQLRKTK NYEFLVQVSKT PG+MD D Sbjct: 636 LISQLRKTKTNYEFLVQVSKTAPGSMDVD 664 Score = 73.9 bits (180), Expect = 6e-11 Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 7/120 (5%) Query: 1 VTDTDLITAGEXXXXXXXXXXXXXXXXXLNTA--APTGALATMVLPELRALANQVGVKGT 58 +T+TDL TA NTA A + +L+TMVLPELRALA ++GV+G Sbjct: 1 MTETDLFTADNASDTGDLSGAVKS-----NTAPRARSASLSTMVLPELRALAKEIGVEGA 55 Query: 59 SGMRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTEAPAVNEATKDAPQQEQNA 118 SG+RK+ELIAAI+ R +NG A A + + Q + EAPA + A ++ A Sbjct: 56 SGLRKSELIAAIRAHRGESNGRTAEASSPATADAQTGEQAAEAPAPRRRERRASTRQAGA 115 >tr|Q1B536|Q1B536_MYCSS Tax_Id=164756 SubName: Full=Transcription termination factor Rho;[Mycobacterium sp.] Length = 663 Score = 689 bits (1777), Expect = 0.0 Identities = 354/389 (91%), Positives = 365/389 (93%), Gaps = 2/389 (0%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 E+REDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNGLRRGDAVTGAV+V Sbjct: 275 EIREDDVVQPVAGILDVLDNYAFVRTSGYLPGPNDVYVSMNMVRKNGLRRGDAVTGAVKV 334 Query: 295 PREGEQ--PNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXX 352 P+EGE NQRQKFNPLVRLDSVNGG VEDA+KRPEFGKLTPLYPNQ Sbjct: 335 PKEGEGGGQNQRQKFNPLVRLDSVNGGPVEDARKRPEFGKLTPLYPNQRLRLETSPDKLT 394 Query: 353 XXVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTD 412 VIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAIT+NNPECHLMVVLVDERPEEVTD Sbjct: 395 TRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERPEEVTD 454 Query: 413 MTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 472 M RSVKGEVIASTFDRPPSDHT+VAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS Sbjct: 455 MQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 514 Query: 473 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 532 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTI+ATAMVETGSTGDTVIFEEFKGT Sbjct: 515 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIVATAMVETGSTGDTVIFEEFKGT 574 Query: 533 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 592 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLL PDEFAIVHKLRRVLSGLDSHQAIDL Sbjct: 575 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLGPDEFAIVHKLRRVLSGLDSHQAIDL 634 Query: 593 LMSQLRKTKNNYEFLVQVSKTTPGNMDND 621 LMSQLRKTK NYEFLVQVSK TPG++DND Sbjct: 635 LMSQLRKTKTNYEFLVQVSKNTPGSVDND 663 Score = 65.5 bits (158), Expect = 2e-08 Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 2/77 (2%) Query: 37 ALATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPA--AAEPTSDSGEQK 94 +L +MVLPELRALA Q+GV+G SGMRK+ELIAAI+E R A AA P + ++ Sbjct: 55 SLTSMVLPELRALARQIGVEGASGMRKSELIAAIRERRGDGGAAKAESAAAPQTPPRRER 114 Query: 95 SSASTEAPAVNEATKDA 111 SAS +A A +A Sbjct: 115 RSASRQAGAAEAKAPEA 131 >tr|A3Q3C8|A3Q3C8_MYCSJ Tax_Id=164757 SubName: Full=Transcription termination factor Rho;[Mycobacterium sp.] Length = 663 Score = 689 bits (1777), Expect = 0.0 Identities = 354/389 (91%), Positives = 365/389 (93%), Gaps = 2/389 (0%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 E+REDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNGLRRGDAVTGAV+V Sbjct: 275 EIREDDVVQPVAGILDVLDNYAFVRTSGYLPGPNDVYVSMNMVRKNGLRRGDAVTGAVKV 334 Query: 295 PREGEQ--PNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXX 352 P+EGE NQRQKFNPLVRLDSVNGG VEDA+KRPEFGKLTPLYPNQ Sbjct: 335 PKEGEGGGQNQRQKFNPLVRLDSVNGGPVEDARKRPEFGKLTPLYPNQRLRLETSPDKLT 394 Query: 353 XXVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTD 412 VIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAIT+NNPECHLMVVLVDERPEEVTD Sbjct: 395 TRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERPEEVTD 454 Query: 413 MTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 472 M RSVKGEVIASTFDRPPSDHT+VAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS Sbjct: 455 MQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 514 Query: 473 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 532 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTI+ATAMVETGSTGDTVIFEEFKGT Sbjct: 515 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIVATAMVETGSTGDTVIFEEFKGT 574 Query: 533 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 592 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLL PDEFAIVHKLRRVLSGLDSHQAIDL Sbjct: 575 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLGPDEFAIVHKLRRVLSGLDSHQAIDL 634 Query: 593 LMSQLRKTKNNYEFLVQVSKTTPGNMDND 621 LMSQLRKTK NYEFLVQVSK TPG++DND Sbjct: 635 LMSQLRKTKTNYEFLVQVSKNTPGSVDND 663 Score = 65.5 bits (158), Expect = 2e-08 Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 2/77 (2%) Query: 37 ALATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPA--AAEPTSDSGEQK 94 +L +MVLPELRALA Q+GV+G SGMRK+ELIAAI+E R A AA P + ++ Sbjct: 55 SLTSMVLPELRALARQIGVEGASGMRKSELIAAIRERRGDGGAAKAESAAAPQTPPRRER 114 Query: 95 SSASTEAPAVNEATKDA 111 SAS +A A +A Sbjct: 115 RSASRQAGAAEAKAPEA 131 >tr|A1UK01|A1UK01_MYCSK Tax_Id=189918 SubName: Full=Transcription termination factor Rho;[Mycobacterium sp.] Length = 663 Score = 689 bits (1777), Expect = 0.0 Identities = 354/389 (91%), Positives = 365/389 (93%), Gaps = 2/389 (0%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 E+REDDVVQPVAGILDVLDNYAFVRTSGYL GP+DVYVSMNMVRKNGLRRGDAVTGAV+V Sbjct: 275 EIREDDVVQPVAGILDVLDNYAFVRTSGYLPGPNDVYVSMNMVRKNGLRRGDAVTGAVKV 334 Query: 295 PREGEQ--PNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXX 352 P+EGE NQRQKFNPLVRLDSVNGG VEDA+KRPEFGKLTPLYPNQ Sbjct: 335 PKEGEGGGQNQRQKFNPLVRLDSVNGGPVEDARKRPEFGKLTPLYPNQRLRLETSPDKLT 394 Query: 353 XXVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTD 412 VIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAIT+NNPECHLMVVLVDERPEEVTD Sbjct: 395 TRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERPEEVTD 454 Query: 413 MTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 472 M RSVKGEVIASTFDRPPSDHT+VAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS Sbjct: 455 MQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 514 Query: 473 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 532 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTI+ATAMVETGSTGDTVIFEEFKGT Sbjct: 515 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIVATAMVETGSTGDTVIFEEFKGT 574 Query: 533 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 592 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLL PDEFAIVHKLRRVLSGLDSHQAIDL Sbjct: 575 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLGPDEFAIVHKLRRVLSGLDSHQAIDL 634 Query: 593 LMSQLRKTKNNYEFLVQVSKTTPGNMDND 621 LMSQLRKTK NYEFLVQVSK TPG++DND Sbjct: 635 LMSQLRKTKTNYEFLVQVSKNTPGSVDND 663 Score = 65.5 bits (158), Expect = 2e-08 Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 2/77 (2%) Query: 37 ALATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPA--AAEPTSDSGEQK 94 +L +MVLPELRALA Q+GV+G SGMRK+ELIAAI+E R A AA P + ++ Sbjct: 55 SLTSMVLPELRALARQIGVEGASGMRKSELIAAIRERRGDGGAAKAESAAAPQTPPRRER 114 Query: 95 SSASTEAPAVNEATKDA 111 SAS +A A +A Sbjct: 115 RSASRQAGAAEAKAPEA 131 >tr|A4T8L9|A4T8L9_MYCGI Tax_Id=350054 SubName: Full=Transcription termination factor Rho;[Mycobacterium gilvum] Length = 691 Score = 674 bits (1739), Expect = 0.0 Identities = 350/390 (89%), Positives = 358/390 (91%), Gaps = 3/390 (0%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGP+DVYVSMNMVRKNGLRRGDAVTGAVRV Sbjct: 302 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGLRRGDAVTGAVRV 361 Query: 295 PREGE---QPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXX 351 PR+ E N RQKFNPLVRLD+VNG VE+AKKRPEF KLTPLYPNQ Sbjct: 362 PRDNEGGGDKNPRQKFNPLVRLDTVNGKPVEEAKKRPEFTKLTPLYPNQRLRLETSSDKL 421 Query: 352 XXXVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVT 411 VIDLIMPIGKGQRALIVSPPKAGKTTI+QDIANAIT+NNPECHLMVVLVDERPEEVT Sbjct: 422 TTRVIDLIMPIGKGQRALIVSPPKAGKTTIMQDIANAITRNNPECHLMVVLVDERPEEVT 481 Query: 412 DMTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNA 471 DM RSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNA Sbjct: 482 DMQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNA 541 Query: 472 SPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKG 531 SPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKG Sbjct: 542 SPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKG 601 Query: 532 TGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAID 591 TGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLS DEFA+VHKLRRVLSGLD HQAID Sbjct: 602 TGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSTDEFAVVHKLRRVLSGLDPHQAID 661 Query: 592 LLMSQLRKTKNNYEFLVQVSKTTPGNMDND 621 LLMSQLRKTKNNYEFLVQVSK TPG D+D Sbjct: 662 LLMSQLRKTKNNYEFLVQVSKNTPGGNDHD 691 Score = 76.6 bits (187), Expect = 9e-12 Identities = 54/131 (41%), Positives = 69/131 (52%), Gaps = 15/131 (11%) Query: 1 VTDTDLITAG------EXXXXXXXXXXXXXXXXXLNTAAPT---GALATMVLPELRALAN 51 +TDTDL TAG E AAP G+L +MVLPELRA+A Sbjct: 1 MTDTDLFTAGGNADSGEMPNTVTADISTSAPADSAPAAAPARRGGSLTSMVLPELRAMAK 60 Query: 52 QVGVKGTSGMRKNELIAAIQEFRDRANG---TPAAAEPTSDSGEQKSSAST---EAPAVN 105 ++GV+G SGMRK ELIAAI+E R ANG T PTS E + ++T +APA Sbjct: 61 EIGVEGASGMRKGELIAAIRERRGEANGSAETKKGDAPTSAPAETAAGSATDSGQAPAAA 120 Query: 106 EATKDAPQQEQ 116 +A +D + Q Sbjct: 121 QAGQDEAAEPQ 131 >tr|B1MLU7|B1MLU7_MYCA9 Tax_Id=561007 SubName: Full=Probable transcription termination factor Rho;[Mycobacterium abscessus] Length = 646 Score = 668 bits (1724), Expect = 0.0 Identities = 346/384 (90%), Positives = 356/384 (92%), Gaps = 2/384 (0%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGP+DVYVSMN+VRKNGLRRGDA+TGAVRV Sbjct: 253 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLVRKNGLRRGDAITGAVRV 312 Query: 295 PREGE--QPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXX 352 PR+ + NQRQKFNPLVRLDSVNGG VEDAKKRP+F KLTPLYPNQ Sbjct: 313 PRDPDAGNQNQRQKFNPLVRLDSVNGGPVEDAKKRPDFTKLTPLYPNQRLRLETTTEKLT 372 Query: 353 XXVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTD 412 VIDLIMPIGKGQRALIVSPPKAGKTTI+Q+IANAI+ NNPECHLMVVLVDERPEEVTD Sbjct: 373 TRVIDLIMPIGKGQRALIVSPPKAGKTTIMQNIANAISANNPECHLMVVLVDERPEEVTD 432 Query: 413 MTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 472 M RSVKGEVIASTFDRPPSDHT AELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS Sbjct: 433 MQRSVKGEVIASTFDRPPSDHTQAAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 492 Query: 473 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 532 PASGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFKGT Sbjct: 493 PASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKGT 552 Query: 533 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 592 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELL+S DEFAIVHKLRRVLSGLDSHQAIDL Sbjct: 553 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLMSGDEFAIVHKLRRVLSGLDSHQAIDL 612 Query: 593 LMSQLRKTKNNYEFLVQVSKTTPG 616 LMSQLRKTKNNYEFLVQVSK TPG Sbjct: 613 LMSQLRKTKNNYEFLVQVSKNTPG 636 Score = 76.6 bits (187), Expect = 9e-12 Identities = 46/81 (56%), Positives = 56/81 (69%), Gaps = 2/81 (2%) Query: 36 GALATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPAAAEPTSDSGE-QK 94 GAL+TMVLPELRALA+QVGVKGTSGMRK +LIAAI+E + A G P + S + Q Sbjct: 37 GALSTMVLPELRALASQVGVKGTSGMRKGDLIAAIREHQG-ALGAPKNNNQAAQSQQPQA 95 Query: 95 SSASTEAPAVNEATKDAPQQE 115 SSA EAP K++ Q+E Sbjct: 96 SSAPAEAPQKESGQKESGQKE 116 >tr|Q5Z0Z4|Q5Z0Z4_NOCFA Tax_Id=37329 (rho)SubName: Full=Putative transcription termination factor Rho;[Nocardia farcinica] Length = 681 Score = 663 bits (1711), Expect = 0.0 Identities = 338/385 (87%), Positives = 357/385 (92%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 E+REDDV+QPVAGILDVLDNYAFVRTSGYLAGP+DVYVSMN+VRKNGLRRGDA+TGAVR Sbjct: 296 EIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLVRKNGLRRGDAITGAVRA 355 Query: 295 PREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXX 354 PR+GEQ NQRQKF+PLVRLD+VNGG VE AK+RPEFGKLTPLYPNQ Sbjct: 356 PRDGEQGNQRQKFDPLVRLDTVNGGDVEAAKRRPEFGKLTPLYPNQRLRLETTPNKLTTR 415 Query: 355 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMT 414 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAI NNPEC+LMVVLVDERPEEVTDM Sbjct: 416 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIATNNPECYLMVVLVDERPEEVTDMQ 475 Query: 415 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 474 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVE GKDVVVLLDSITRLGRAYNN+SPA Sbjct: 476 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEMGKDVVVLLDSITRLGRAYNNSSPA 535 Query: 475 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 534 SGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFKGTGN Sbjct: 536 SGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 595 Query: 535 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 594 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDE A++HKLRRVLSGLDSHQAIDLL+ Sbjct: 596 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEAAVLHKLRRVLSGLDSHQAIDLLI 655 Query: 595 SQLRKTKNNYEFLVQVSKTTPGNMD 619 +L+K+KNN EFL+QVSKT PG +D Sbjct: 656 DRLKKSKNNLEFLMQVSKTAPGALD 680 Score = 57.0 bits (136), Expect = 7e-06 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 5/89 (5%) Query: 30 NTAAPTGALATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPAAAEPTSD 89 +T L M+LP+LRALA ++G++GTSGMRK +LIAAI+E ++A A +P Sbjct: 35 HTDVARSGLTGMLLPQLRALAGELGIRGTSGMRKGDLIAAIKE--NQAGRAAKADKPARS 92 Query: 90 SGEQKSSASTEAPAVNEATKDAPQQEQNA 118 + + +A PA + K AP + + A Sbjct: 93 EAKSEQTALDVQPAKD---KTAPAESKAA 118 >tr|Q0SGN6|Q0SGN6_RHOSR Tax_Id=101510 SubName: Full=Transcription termination factor Rho;[Rhodococcus sp.] Length = 694 Score = 654 bits (1687), Expect = 0.0 Identities = 332/386 (86%), Positives = 356/386 (92%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 E+REDDV+QPVAGILDVLDNYAFVRTSGYLAGP+DVYVSMN++RKNGLRRGDA+TGAVRV Sbjct: 309 EIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLRRGDAITGAVRV 368 Query: 295 PREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXX 354 REGEQ NQRQKFNPLVR+D+VNGG VE AKKRPEFGKLTPLYPNQ Sbjct: 369 GREGEQGNQRQKFNPLVRIDTVNGGDVEAAKKRPEFGKLTPLYPNQRLRLETTPNILTTR 428 Query: 355 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMT 414 VIDL+MPIGKGQRALIVSPPKAGKT++LQ IANAI NNPEC+LMVVLVDERPEEVTDM Sbjct: 429 VIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAIATNNPECYLMVVLVDERPEEVTDMQ 488 Query: 415 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 474 RSVKGEVI+STFDRPP DHTSVAELAIERAKRLVE GKDVVVLLDSITRLGRAYNN+SPA Sbjct: 489 RSVKGEVISSTFDRPPGDHTSVAELAIERAKRLVEAGKDVVVLLDSITRLGRAYNNSSPA 548 Query: 475 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 534 SGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFKGTGN Sbjct: 549 SGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 608 Query: 535 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 594 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDE A++HKLRRVLSGLDSHQAIDLL+ Sbjct: 609 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEAAVLHKLRRVLSGLDSHQAIDLLI 668 Query: 595 SQLRKTKNNYEFLVQVSKTTPGNMDN 620 +L+K+K+N EFL+QVSKT PG +D+ Sbjct: 669 DRLKKSKSNIEFLMQVSKTAPGAIDD 694 Score = 52.4 bits (124), Expect = 2e-04 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 2/78 (2%) Query: 38 LATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSA 97 L+ MVL ELR LA ++G+KG SGMRK +LIAAI+E R + PAAA T + +++ Sbjct: 54 LSGMVLTELRTLAGELGIKGISGMRKGDLIAAIKE-RQGGSSAPAAA-ATEAAPRTRATR 111 Query: 98 STEAPAVNEATKDAPQQE 115 + + + PQ E Sbjct: 112 AKRVESAQTELEVTPQVE 129 >tr|D0L9H1|D0L9H1_GORB4 Tax_Id=526226 SubName: Full=Transcription termination factor Rho;[Gordonia bronchialis] Length = 662 Score = 653 bits (1685), Expect = 0.0 Identities = 333/387 (86%), Positives = 354/387 (91%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 ++ EDDV+QPVAGILDVLDNYAFVRTSGYLAGP+DVYVSMN+VRKNGLRRGDA+TGAV+V Sbjct: 276 QVSEDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLVRKNGLRRGDAITGAVKV 335 Query: 295 PREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXX 354 PREGEQ NQRQKFNPLVRLD+VNGG VE A+KRPEFGKLTPLYPNQ Sbjct: 336 PREGEQQNQRQKFNPLVRLDTVNGGDVEAARKRPEFGKLTPLYPNQRLRLETTPERLDTR 395 Query: 355 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMT 414 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAIT NNPECHLMVVLVDERPEEVTDM Sbjct: 396 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITINNPECHLMVVLVDERPEEVTDMQ 455 Query: 415 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 474 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVE GKDVVVLLDSITRLGRAYNNASPA Sbjct: 456 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVESGKDVVVLLDSITRLGRAYNNASPA 515 Query: 475 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 534 SGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIA+A+VETGSTGDTVIFEEFKGTGN Sbjct: 516 SGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIASALVETGSTGDTVIFEEFKGTGN 575 Query: 535 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 594 AELKLDRKIA+RRVFPAVDVN S TRKDEL++SP+EF+I+HKLRRVLSGLDS QAIDLL+ Sbjct: 576 AELKLDRKIADRRVFPAVDVNQSSTRKDELMMSPEEFSIMHKLRRVLSGLDSQQAIDLLL 635 Query: 595 SQLRKTKNNYEFLVQVSKTTPGNMDND 621 SQL+KTK N EFL+QV PG M +D Sbjct: 636 SQLKKTKTNVEFLMQVQSNAPGAMKDD 662 Score = 54.3 bits (129), Expect = 5e-05 Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 5/103 (4%) Query: 1 VTDTDLITAGEXXXXXXXXXXXXXXXXXLNTAAPTGALATMVLPELRALANQVGVKGTSG 60 +T+TDLITA T TG L MVL ELRA+A ++G+KGTSG Sbjct: 1 MTETDLITAPAEEGSADSAASGAASKSRTRTQR-TG-LTGMVLTELRAVAGELGIKGTSG 58 Query: 61 MRKNELIAAIQEFR---DRANGTPAAAEPTSDSGEQKSSASTE 100 MRK +LIAAI+E + ANG A + + K S + E Sbjct: 59 MRKGDLIAAIKERQAGAASANGIGEAEKKARRASAPKDSGAPE 101 >tr|C1AW12|C1AW12_RHOOB Tax_Id=632772 (rho)SubName: Full=Transcription termination factor Rho;[Rhodococcus opacus] Length = 687 Score = 653 bits (1684), Expect = 0.0 Identities = 331/386 (85%), Positives = 356/386 (92%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 E+REDDV+QPVAGILDVLDNYAFVRTSGYLAGP+DVYVSMN++RKNGLRRGDA+TGAVRV Sbjct: 302 EIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLRRGDAITGAVRV 361 Query: 295 PREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXX 354 REG+Q NQRQKFNPLVR+D+VNGG VE AKKRPEFGKLTPLYPNQ Sbjct: 362 GREGDQGNQRQKFNPLVRIDTVNGGDVEAAKKRPEFGKLTPLYPNQRLRLETTPNILTTR 421 Query: 355 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMT 414 VIDL+MPIGKGQRALIVSPPKAGKT++LQ IANAI NNPEC+LMVVLVDERPEEVTDM Sbjct: 422 VIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAIATNNPECYLMVVLVDERPEEVTDMQ 481 Query: 415 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 474 RSVKGEVI+STFDRPP DHTSVAELAIERAKRLVE GKDVVVLLDSITRLGRAYNN+SPA Sbjct: 482 RSVKGEVISSTFDRPPGDHTSVAELAIERAKRLVEAGKDVVVLLDSITRLGRAYNNSSPA 541 Query: 475 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 534 SGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFKGTGN Sbjct: 542 SGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 601 Query: 535 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 594 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDE A++HKLRRVLSGLDSHQAIDLL+ Sbjct: 602 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEAAVLHKLRRVLSGLDSHQAIDLLI 661 Query: 595 SQLRKTKNNYEFLVQVSKTTPGNMDN 620 +L+K+K+N EFL+QVSKT PG +D+ Sbjct: 662 DRLKKSKSNLEFLMQVSKTAPGAIDD 687 Score = 54.7 bits (130), Expect = 4e-05 Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 2/78 (2%) Query: 38 LATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSA 97 L+ MVL ELR+LA ++G+KG SGMRK +LIAAI+E R + PAAA + + + A Sbjct: 47 LSGMVLTELRSLAGELGIKGISGMRKGDLIAAIKE-RQGGSAAPAAAATETAPRTRATRA 105 Query: 98 STEAPAVNEATKDAPQQE 115 E A E + PQ E Sbjct: 106 KREQSAQTE-LEVTPQAE 122 >tr|C1A1Z2|C1A1Z2_RHOE4 Tax_Id=234621 (rho)SubName: Full=Transcription termination factor Rho;[Rhodococcus erythropolis] Length = 712 Score = 647 bits (1669), Expect = 0.0 Identities = 326/386 (84%), Positives = 354/386 (91%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 E+REDDV+QPVAGILDVLDNYAFVRTSGYLAGP+DVYVSMN++RKNGLRRGDA+TGAVRV Sbjct: 327 EIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLRRGDAITGAVRV 386 Query: 295 PREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXX 354 R+GEQ +QRQKFNPLVR+D+VNGG VE AKKRPEF KLTPLYPNQ Sbjct: 387 SRDGEQGSQRQKFNPLVRIDTVNGGDVEAAKKRPEFNKLTPLYPNQRLRLETEQHILTTR 446 Query: 355 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMT 414 VIDL+MPIGKGQRALIVSPPKAGKT++LQ IANA+ NNPEC+LMV+LVDERPEEVTDM Sbjct: 447 VIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAVATNNPECYLMVILVDERPEEVTDMQ 506 Query: 415 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 474 RSVKGEVI+STFDRPP DHT+VAELAIERAKRLVE GKDVVVLLDSITRLGRAYNN+SPA Sbjct: 507 RSVKGEVISSTFDRPPGDHTAVAELAIERAKRLVEMGKDVVVLLDSITRLGRAYNNSSPA 566 Query: 475 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 534 SGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFKGTGN Sbjct: 567 SGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 626 Query: 535 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 594 AELKLDRKIAERRVFPAVDVNPS TRKDELLLSPDE A++HKLRRVLSGLDSHQAIDLL+ Sbjct: 627 AELKLDRKIAERRVFPAVDVNPSSTRKDELLLSPDEAAVLHKLRRVLSGLDSHQAIDLLI 686 Query: 595 SQLRKTKNNYEFLVQVSKTTPGNMDN 620 +L+K+KNN EFL+QVSKT PG +D+ Sbjct: 687 DRLKKSKNNLEFLMQVSKTAPGAIDD 712 Score = 57.4 bits (137), Expect = 6e-06 Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 8/78 (10%) Query: 38 LATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFR-DRANGTPAAAEPTSDS------ 90 L+ MVL ELR LA ++G+KGTSGMRK +LIAAI+E + A PA +E T D Sbjct: 47 LSGMVLTELRTLAGELGIKGTSGMRKGDLIAAIKERQGGSAKAAPAQSELTLDDAPVART 106 Query: 91 -GEQKSSASTEAPAVNEA 107 + +A TE PA A Sbjct: 107 RAKSTRAARTETPAAETA 124 >tr|C3JI49|C3JI49_RHOER Tax_Id=596309 (rho)SubName: Full=Transcription termination factor Rho;[Rhodococcus erythropolis SK121] Length = 718 Score = 647 bits (1669), Expect = 0.0 Identities = 326/386 (84%), Positives = 354/386 (91%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 E+REDDV+QPVAGILDVLDNYAFVRTSGYLAGP+DVYVSMN++RKNGLRRGDA+TGAVRV Sbjct: 333 EIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLIRKNGLRRGDAITGAVRV 392 Query: 295 PREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXX 354 R+GEQ +QRQKFNPLVR+D+VNGG VE AKKRPEF KLTPLYPNQ Sbjct: 393 SRDGEQGSQRQKFNPLVRIDTVNGGDVEAAKKRPEFNKLTPLYPNQRLRLETEQHILTTR 452 Query: 355 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMT 414 VIDL+MPIGKGQRALIVSPPKAGKT++LQ IANA+ NNPEC+LMV+LVDERPEEVTDM Sbjct: 453 VIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAVATNNPECYLMVILVDERPEEVTDMQ 512 Query: 415 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 474 RSVKGEVI+STFDRPP DHT+VAELAIERAKRLVE GKDVVVLLDSITRLGRAYNN+SPA Sbjct: 513 RSVKGEVISSTFDRPPGDHTAVAELAIERAKRLVEMGKDVVVLLDSITRLGRAYNNSSPA 572 Query: 475 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 534 SGRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATAMVETGSTGDTVIFEEFKGTGN Sbjct: 573 SGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 632 Query: 535 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 594 AELKLDRKIAERRVFPAVDVNPS TRKDELLLSPDE A++HKLRRVLSGLDSHQAIDLL+ Sbjct: 633 AELKLDRKIAERRVFPAVDVNPSSTRKDELLLSPDEAAVLHKLRRVLSGLDSHQAIDLLI 692 Query: 595 SQLRKTKNNYEFLVQVSKTTPGNMDN 620 +L+K+KNN EFL+QVSKT PG +D+ Sbjct: 693 DRLKKSKNNLEFLMQVSKTAPGAIDD 718 Score = 57.4 bits (137), Expect = 6e-06 Identities = 36/78 (46%), Positives = 46/78 (58%), Gaps = 8/78 (10%) Query: 38 LATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFR-DRANGTPAAAEPTSDS------ 90 L+ MVL ELR LA ++G+KGTSGMRK +LIAAI+E + A PA +E T D Sbjct: 47 LSGMVLTELRTLAGELGIKGTSGMRKGDLIAAIKERQGGSAKAAPAQSELTLDDAPVART 106 Query: 91 -GEQKSSASTEAPAVNEA 107 + +A TE PA A Sbjct: 107 RAKSTRAARTETPAAETA 124 >tr|C7MX54|C7MX54_SACVD Tax_Id=471857 SubName: Full=Transcription termination factor Rho;[Saccharomonospora viridis] Length = 613 Score = 613 bits (1580), Expect = e-173 Identities = 317/386 (82%), Positives = 340/386 (88%), Gaps = 2/386 (0%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 E+REDDV+ PVAGILDVL+NYAFVRTSGYL GP+DVYVS+++VRK GLRRGDA+TG V+ Sbjct: 230 EIREDDVLLPVAGILDVLENYAFVRTSGYLPGPNDVYVSLSLVRKYGLRRGDAITGVVKQ 289 Query: 295 PREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXX 354 PREGEQ QRQKFNPLVR+DSVNG E AKKRPEF KLTPLYPN+ Sbjct: 290 PREGEQ--QRQKFNPLVRVDSVNGLDPEVAKKRPEFHKLTPLYPNERLRLETTPNKLTTR 347 Query: 355 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMT 414 VIDL+MP+GKGQRALIVSPPKAGKTTI+QDIANAIT NNPECHLMVVLVDERPEEVTDM Sbjct: 348 VIDLVMPVGKGQRALIVSPPKAGKTTIMQDIANAITTNNPECHLMVVLVDERPEEVTDMQ 407 Query: 415 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 474 RSVKGEVIASTFDRPPSDHTSVAEL+IERAKRLVE G DVVVLLDSITRLGRAYN A+PA Sbjct: 408 RSVKGEVIASTFDRPPSDHTSVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNLAAPA 467 Query: 475 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 534 SGRILSGGVDSTAL+PPKRFLGAARNIE GGSLTI ATAMVETGSTGDTVIFEEFKGTGN Sbjct: 468 SGRILSGGVDSTALFPPKRFLGAARNIEGGGSLTIFATAMVETGSTGDTVIFEEFKGTGN 527 Query: 535 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 594 AELKLDRKIAERRVFPAVDVNPSGTRK+ELLLSPDE A+ HKL RVL LDS QAIDLL+ Sbjct: 528 AELKLDRKIAERRVFPAVDVNPSGTRKEELLLSPDELAVTHKLHRVLHALDSQQAIDLLL 587 Query: 595 SQLRKTKNNYEFLVQVSKTTPGNMDN 620 +LRKTK N EFL+QVSK PG +N Sbjct: 588 DRLRKTKTNAEFLMQVSKNMPGPDEN 613 Score = 49.3 bits (116), Expect = 0.002 Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 7/68 (10%) Query: 41 MVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSASTE 100 MV+ ELR LA ++G+ GT+GMRK +LIAAI+E + + T A + SA T Sbjct: 1 MVIAELRELAAELGITGTTGMRKGDLIAAIRERQGKTKRTRTTA-------KSSGSAGTA 53 Query: 101 APAVNEAT 108 A EAT Sbjct: 54 GVAAEEAT 61 >tr|C2AS02|C2AS02_TSUPA Tax_Id=521096 SubName: Full=Transcription termination factor Rho;[Tsukamurella paurometabola DSM 20162] Length = 653 Score = 609 bits (1570), Expect = e-172 Identities = 313/394 (79%), Positives = 342/394 (86%), Gaps = 14/394 (3%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 ++ EDDV+QPVAGILDVLDNYAFVRTSGY+AGP+DVYVSMNMVR+NGLRRGDA+ GAV++ Sbjct: 254 QVSEDDVLQPVAGILDVLDNYAFVRTSGYIAGPNDVYVSMNMVRRNGLRRGDAIVGAVKM 313 Query: 295 PREGEQ--------------PNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQ 340 PR+GE + RQKFNPLVRLDSVNG V+ AK RPEF KLTPLYPNQ Sbjct: 314 PRDGESNDGGNQGGGGGRGNQSNRQKFNPLVRLDSVNGQDVDSAKNRPEFNKLTPLYPNQ 373 Query: 341 XXXXXXXXXXXXXXVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMV 400 VIDLIMPIGKGQRALI +PPKAGKTTI+QDIANAI NNPEC+LMV Sbjct: 374 RLRLETAQNILTTRVIDLIMPIGKGQRALISAPPKAGKTTIMQDIANAIATNNPECYLMV 433 Query: 401 VLVDERPEEVTDMTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDS 460 VLVDERPEEVTDM RS KGEVI+STFDRPPSDHTSVAELAIERAKRLVE GKDVVVLLDS Sbjct: 434 VLVDERPEEVTDMQRSTKGEVISSTFDRPPSDHTSVAELAIERAKRLVEGGKDVVVLLDS 493 Query: 461 ITRLGRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGST 520 ITRLGRAYNN+SPASGRILSGG+DSTALYPPKRFLGAARNIE GGSLTIIATAMVETGST Sbjct: 494 ITRLGRAYNNSSPASGRILSGGIDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGST 553 Query: 521 GDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRV 580 GDTVIFEEFKGTGNAELKLDRKI+ERR+FPAVDV+PS TRKDELLL+PDE AIVHKLRR+ Sbjct: 554 GDTVIFEEFKGTGNAELKLDRKISERRIFPAVDVHPSSTRKDELLLAPDEAAIVHKLRRL 613 Query: 581 LSGLDSHQAIDLLMSQLRKTKNNYEFLVQVSKTT 614 LSGLDS QAI+LL+SQL+KT+NN EFL+ V K + Sbjct: 614 LSGLDSQQAIELLISQLKKTQNNIEFLMMVQKNS 647 Score = 52.0 bits (123), Expect = 2e-04 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 13/87 (14%) Query: 41 MVLPELRALANQVGVKGTSGMRKNELIAAI------------QEFRDRANGTPAAAEPTS 88 MVL ELR +A +G+KG SG+RK +LIAAI + + P AA P + Sbjct: 34 MVLAELRTIAGDLGIKGISGLRKGDLIAAITAQQGSGAAPTSKAEKPAKTAPPKAAAPKA 93 Query: 89 DSGEQKSSASTEAPAVNEATKDAPQQE 115 D+ + +A EAP T +AP+ E Sbjct: 94 DA-PKAEAAKVEAPKAEATTAEAPKTE 119 >tr|C6WHL1|C6WHL1_ACTMD Tax_Id=446462 SubName: Full=Transcription termination factor Rho;[Actinosynnema mirum] Length = 709 Score = 595 bits (1534), Expect = e-168 Identities = 301/387 (77%), Positives = 342/387 (88%), Gaps = 3/387 (0%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 E+R+DDV+ PVAGILDVL+NYAFVRTSGYLAGP+DVYVS+++VRK+GLRRGDA+ GAVR Sbjct: 326 EVRDDDVLLPVAGILDVLENYAFVRTSGYLAGPNDVYVSLSLVRKHGLRRGDAIIGAVRQ 385 Query: 295 PREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXX 354 PR+GEQ QRQKFNPLVR+D +NG E+++ RP+F KLTPLYPN+ Sbjct: 386 PRDGEQ--QRQKFNPLVRVDKINGLDPEESRNRPDFTKLTPLYPNERLRLETEPHILTTR 443 Query: 355 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMT 414 VIDL+MPIGKGQRAL+VSPPKAGKT++LQ IANAIT NNPECHLMVVLVDERPEEVTDM Sbjct: 444 VIDLVMPIGKGQRALVVSPPKAGKTSVLQSIANAITTNNPECHLMVVLVDERPEEVTDMQ 503 Query: 415 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 474 RSVKGEVIASTFDRPPSDHT+++ELAIERAKRLVE G DVVVLLDSITRLGRAYN A+PA Sbjct: 504 RSVKGEVIASTFDRPPSDHTTISELAIERAKRLVEMGHDVVVLLDSITRLGRAYNLAAPA 563 Query: 475 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 534 SGRILSGGVDSTALYPPKRFLGAARNIE GGSLT+IATA+VETGS GD+VIFEEFKGTGN Sbjct: 564 SGRILSGGVDSTALYPPKRFLGAARNIEGGGSLTVIATALVETGSAGDSVIFEEFKGTGN 623 Query: 535 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 594 AELKLDRKIA++R FPAVDV+ SGTRK++LLLSPDE A++HKLRRVL LD QAIDLL+ Sbjct: 624 AELKLDRKIADKRTFPAVDVDSSGTRKEDLLLSPDELAVMHKLRRVLHALDGQQAIDLLL 683 Query: 595 SQLRKTKNNYEFLVQVSKTTPGNMDND 621 +LRKT+ N EFL+QV+KTTPG DND Sbjct: 684 DRLRKTRTNIEFLMQVAKTTPG-ADND 709 Score = 52.8 bits (125), Expect = 1e-04 Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 4/89 (4%) Query: 32 AAPTGALATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPAAAEP---TS 88 A L+ MVL ELR LA Q+G+ T+ +RK +LIAAI+E + +G +AA P Sbjct: 37 ARKRAGLSGMVLAELRELAGQLGIDSTAKLRKGDLIAAIKERQGGTSGRGSAATPPKAEK 96 Query: 89 DSGEQKSSASTEAPA-VNEATKDAPQQEQ 116 E+ ++ EAPA E + P Q+Q Sbjct: 97 PKAEKATAKPAEAPAPAAEKAVEKPTQQQ 125 >tr|C8XIA7|C8XIA7_NAKMY Tax_Id=479431 SubName: Full=Transcription termination factor Rho;[Nakamurella multipartita] Length = 717 Score = 582 bits (1501), Expect = e-164 Identities = 294/385 (76%), Positives = 336/385 (87%), Gaps = 2/385 (0%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 ELR+DDV+ PVAGILDVLD+YAF+RTSGYL GP+DVYVS++ VRKNGLRRGDAVTGAVR Sbjct: 335 ELRDDDVLVPVAGILDVLDSYAFIRTSGYLTGPNDVYVSLSQVRKNGLRRGDAVTGAVRA 394 Query: 295 PREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXX 354 REGEQ QRQKFN LVRLDSVNG E A+ RPEF KLTPLYPN+ Sbjct: 395 QREGEQ--QRQKFNALVRLDSVNGLDPEQARNRPEFTKLTPLYPNERLRLETESHLLTTR 452 Query: 355 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMT 414 VIDL+MP+GKGQRALIVSPPKAGKT ++Q IANAI KNNPECHLMVVLVDERPEEVTDM Sbjct: 453 VIDLVMPVGKGQRALIVSPPKAGKTMVMQAIANAIAKNNPECHLMVVLVDERPEEVTDMQ 512 Query: 415 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 474 RSVKGEVIASTFDRPP+DHT VAEL+IERAKRLVE G+DVVVLLDSITRLGRAYN A+PA Sbjct: 513 RSVKGEVIASTFDRPPADHTMVAELSIERAKRLVEMGRDVVVLLDSITRLGRAYNLAAPA 572 Query: 475 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 534 SGRILSGGVDSTAL+PPKRFLGAARNIE GGSLTI A+A+VETGS GDTVIFEEFKGTGN Sbjct: 573 SGRILSGGVDSTALFPPKRFLGAARNIENGGSLTIFASALVETGSAGDTVIFEEFKGTGN 632 Query: 535 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 594 AELKLDR++A++R+FPA+DV+ S TRK++LL+SPDE A+V KLRRVL+ LD+ Q+I+L++ Sbjct: 633 AELKLDRRLADKRIFPAIDVDQSSTRKEDLLMSPDELAVVVKLRRVLAALDTQQSIELVL 692 Query: 595 SQLRKTKNNYEFLVQVSKTTPGNMD 619 +LRKT++N EFL+QV+K TPG D Sbjct: 693 DRLRKTRSNIEFLMQVAKNTPGGSD 717 Score = 52.4 bits (124), Expect = 2e-04 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 8/69 (11%) Query: 38 LATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRAN-GTPAAAEPTSDSGEQKSS 96 L+ MVL +L+A+A+Q+G++GTSGMRK +L+AAI + + G PAA EP + Sbjct: 33 LSGMVLTDLKAMASQLGIRGTSGMRKGDLVAAITAKQSGGHAGAPAAHEPAGPT------ 86 Query: 97 ASTEAPAVN 105 + APA N Sbjct: 87 -NGSAPATN 94 >tr|A4FN42|A4FN42_SACEN Tax_Id=405948 (rho1)SubName: Full=Putative transcription termination factor Rho;[Saccharopolyspora erythraea] Length = 642 Score = 582 bits (1499), Expect = e-164 Identities = 295/382 (77%), Positives = 333/382 (87%), Gaps = 2/382 (0%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 E+REDDV+ PVAGILDVL+NYAFVRTSGYLAGP+DVYVS+++VRK GLRRGDA+ G +R Sbjct: 259 EVREDDVLLPVAGILDVLENYAFVRTSGYLAGPNDVYVSLSLVRKYGLRRGDAIKGVIRQ 318 Query: 295 PREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXX 354 PREGEQ QRQKFNPLVR+D++NG + AK R EF KLTPLYPN+ Sbjct: 319 PREGEQ--QRQKFNPLVRVDAINGLEPDAAKGRSEFHKLTPLYPNERLRLETEPHNLTGR 376 Query: 355 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMT 414 +IDL+MP+GKGQRALIVSPPKAGKT +LQ IANAIT NNPECHLMVVL DERPEEVTDM Sbjct: 377 IIDLVMPVGKGQRALIVSPPKAGKTMVLQAIANAITTNNPECHLMVVLADERPEEVTDMQ 436 Query: 415 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 474 RSVKGEVIASTFDRPPSDHT+VAEL+IERAKRLVE G DVVVLLDSITRLGRAYN A+PA Sbjct: 437 RSVKGEVIASTFDRPPSDHTTVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNLAAPA 496 Query: 475 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 534 SGRILSGGVDSTALYPPKRFLGAARNIE GGSLTI ATA+VETGST DTVIFEEFKGTGN Sbjct: 497 SGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIFATALVETGSTMDTVIFEEFKGTGN 556 Query: 535 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 594 AELKLDRK+A++R+FPAVDV+ S TRKDE+LLSPDE A+ HKLRRVL+ LD+ QA++LL Sbjct: 557 AELKLDRKLADKRLFPAVDVDASSTRKDEILLSPDELAVTHKLRRVLAALDAQQALELLQ 616 Query: 595 SQLRKTKNNYEFLVQVSKTTPG 616 +LRK++ N EFL+QV+KTTPG Sbjct: 617 DRLRKSRTNIEFLMQVAKTTPG 638 Score = 51.2 bits (121), Expect = 4e-04 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 6/83 (7%) Query: 36 GALATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPAAAEPT---SDSGE 92 G L+ MVL ELR LA ++G++ T+G+RK +LIAAI+E + P + T S E Sbjct: 34 GGLSGMVLAELRQLAGELGIE-TTGLRKGDLIAAIKE--RQGGAAPQRSRSTKKPSQGAE 90 Query: 93 QKSSASTEAPAVNEATKDAPQQE 115 + A PA++E+ D+ Q++ Sbjct: 91 DSAQAKAHQPALDESDADSKQRD 113 >tr|C4LJM6|C4LJM6_CORK4 Tax_Id=645127 SubName: Full=Transcription termination factor;[Corynebacterium kroppenstedtii] Length = 673 Score = 579 bits (1493), Expect = e-163 Identities = 300/394 (76%), Positives = 334/394 (84%), Gaps = 7/394 (1%) Query: 235 ELREDDVVQPVAGILDVLDNY-AFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVR 293 +LRE + QP+AGILDV+DN AF+RTSGY +GP+DVYVSMNMVR G+RRGDAVTG ++ Sbjct: 277 QLREGETFQPIAGILDVVDNNTAFIRTSGYQSGPNDVYVSMNMVRSQGMRRGDAVTGQIK 336 Query: 294 VPREGEQPNQ------RQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXX 347 V +G Q RQKF PL R+D+VNG + E+AK RPEF KLTPLYPNQ Sbjct: 337 VREDGSSRPQHGRGRNRQKFAPLARVDTVNGMTPEEAKARPEFAKLTPLYPNQRLRLETD 396 Query: 348 XXXXXXXVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERP 407 VIDLIMPIGKGQRALIVSPPKAGKTTILQD+ANAIT NN EC+LMVVLVDERP Sbjct: 397 QKKLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDVANAITTNNQECYLMVVLVDERP 456 Query: 408 EEVTDMTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRA 467 EEVTDM RSV GEVIASTFDRPPS+HT+VAELAIERAKRLVE G+DVVVLLDSITRLGRA Sbjct: 457 EEVTDMQRSVNGEVIASTFDRPPSEHTTVAELAIERAKRLVEAGQDVVVLLDSITRLGRA 516 Query: 468 YNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFE 527 YNN+SPASGRILSGGVDS ALYPPKRFLGAARNIE GGSLTIIATAMVETGS GDTVIFE Sbjct: 517 YNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFE 576 Query: 528 EFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSH 587 EFKGTGNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLL+PDE ++HKLRR+LS LD Sbjct: 577 EFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLAPDEARVMHKLRRILSALDPQ 636 Query: 588 QAIDLLMSQLRKTKNNYEFLVQVSKTTPGNMDND 621 QAIDLL+ QLRKTKNN EFL+Q++ + P ++ +D Sbjct: 637 QAIDLLIKQLRKTKNNGEFLMQIASSAPMSVPDD 670 Score = 52.4 bits (124), Expect = 2e-04 Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 6/81 (7%) Query: 31 TAAPTGALATMVLPELRALANQVGVKGTSGMRKNELIAAI------QEFRDRANGTPAAA 84 T T LA M +PEL+ALA + G++G SG+RK ++IAAI Q + T A Sbjct: 2 TDTDTNNLAAMRIPELKALAAEKGIRGLSGLRKGDIIAAIQAADAGQPYSRPRRSTRKAG 61 Query: 85 EPTSDSGEQKSSASTEAPAVN 105 EP ++S +S S A + N Sbjct: 62 EPKAESHHSDNSESPNADSFN 82 >tr|A4XAX8|A4XAX8_SALTO Tax_Id=369723 SubName: Full=Transcription termination factor Rho;[Salinispora tropica] Length = 675 Score = 575 bits (1483), Expect = e-162 Identities = 284/382 (74%), Positives = 335/382 (87%), Gaps = 2/382 (0%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 ++ EDDV+ PVAGI+DVLDNYAFVRT+GYLAGP+DVYVSM+ +++ GLRRGDA+TGAVR Sbjct: 295 QVSEDDVLVPVAGIIDVLDNYAFVRTTGYLAGPNDVYVSMSQIKRYGLRRGDAITGAVRA 354 Query: 295 PREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXX 354 REGEQ +R K+NPLVRLD++NG E+AK+RPEF +LTPLYP + Sbjct: 355 AREGEQ--RRDKYNPLVRLDTINGMEPEEAKRRPEFYRLTPLYPQERLRLESEPHILTTR 412 Query: 355 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMT 414 VIDL+MPIGKGQRALIVSPPKAGKT +LQ IANAIT NNPECHLMVVLVDERPEEVTDM Sbjct: 413 VIDLVMPIGKGQRALIVSPPKAGKTMVLQAIANAITHNNPECHLMVVLVDERPEEVTDMQ 472 Query: 415 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 474 RSVKGEV+A+TFDRPP DHT+VAELAIERAKRLVE G DVVVLLDS+TRLGR+YN A+PA Sbjct: 473 RSVKGEVVAATFDRPPQDHTTVAELAIERAKRLVELGHDVVVLLDSVTRLGRSYNLAAPA 532 Query: 475 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 534 SGRI+SGG+DSTALYPPKRFLGAARNIE GGSLTI+ATA+VETGST DTVIFEEFKGTGN Sbjct: 533 SGRIMSGGIDSTALYPPKRFLGAARNIENGGSLTILATALVETGSTADTVIFEEFKGTGN 592 Query: 535 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 594 AELKLDRKIA++R FPA+D++PSGTRK+E+LL+P+E AIVHKLR+VL LDS A+DLL+ Sbjct: 593 AELKLDRKIADKRTFPAIDIHPSGTRKEEILLAPEELAIVHKLRKVLHALDSQAALDLLL 652 Query: 595 SQLRKTKNNYEFLVQVSKTTPG 616 +L+K++ N EFL+Q++K+TPG Sbjct: 653 DRLKKSRTNIEFLMQIAKSTPG 674 Score = 44.7 bits (104), Expect = 0.038 Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 19/97 (19%) Query: 41 MVLPELRALANQVGVKGTSGMRKNELIAAIQEFR--DRANGTP-------AAAEP----- 86 M+LPEL++LA +G+ GT+ MRK ELI+AI E + A GTP AAA P Sbjct: 1 MLLPELQSLAASLGISGTARMRKGELISAITERQGGGAATGTPRPRAEVAAAAAPARGEV 60 Query: 87 ---TSDSGEQKSSAS--TEAPAVNEATKDAPQQEQNA 118 +SGE+ + S E P T A + A Sbjct: 61 HAEVRESGERAETESRPAEQPTTTPTTGRARGRRSRA 97 >tr|C0UBY4|C0UBY4_9ACTO Tax_Id=526225 SubName: Full=Transcription termination factor Rho; Flags: Fragment;[Geodermatophilus obscurus DSM 43160] Length = 496 Score = 573 bits (1478), Expect = e-161 Identities = 295/382 (77%), Positives = 332/382 (86%), Gaps = 5/382 (1%) Query: 238 EDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPRE 297 EDDV+ PVAGILDVLDNYAFVRTSGYL GP+DVYVS++ VR+ GLRRGDA+TGAVR PRE Sbjct: 117 EDDVLLPVAGILDVLDNYAFVRTSGYLTGPNDVYVSLSQVRRYGLRRGDAITGAVRQPRE 176 Query: 298 GEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXXVID 357 GE+ + K+N LVRLD+VNG E A++RPEF KLTPLYP + VID Sbjct: 177 GER---KDKYNALVRLDTVNGLEPEQARQRPEFTKLTPLYPQERLRLETESHQLTTRVID 233 Query: 358 LIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTRSV 417 L+MPIGKGQRALIVSPPKAGKT +LQ IANAIT NNPECHLMVVLVDERPEEVTDM RSV Sbjct: 234 LVMPIGKGQRALIVSPPKAGKTMVLQSIANAITTNNPECHLMVVLVDERPEEVTDMQRSV 293 Query: 418 KGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGR 477 KGEVIASTFDRPPSDHT+VAEL+IERAKRLVE G DVVVLLDSITRLGRAYN A+PASGR Sbjct: 294 KGEVIASTFDRPPSDHTTVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNLAAPASGR 353 Query: 478 ILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAEL 537 ILSGGVDSTALYPPKRFLGAARNIE GGSLTIIA+A+VETGST DTVIFEEFKGTGNAE+ Sbjct: 354 ILSGGVDSTALYPPKRFLGAARNIENGGSLTIIASALVETGSTMDTVIFEEFKGTGNAEI 413 Query: 538 KLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMSQL 597 KLDR++A++RVFPAVDVN SGTRK+E+L+SPDE AIV KLRRVL+ L+ QA++LL+ +L Sbjct: 414 KLDRRLADKRVFPAVDVNASGTRKEEILMSPDELAIVIKLRRVLAALEPQQALELLLDKL 473 Query: 598 RKTKNNYEFLVQVSKTT--PGN 617 RKT+NN EFL+Q+ KTT PGN Sbjct: 474 RKTRNNIEFLMQIQKTTLGPGN 495 >tr|A8L3U9|A8L3U9_FRASN Tax_Id=298653 SubName: Full=Transcription termination factor Rho; Flags: Precursor;[Frankia sp.] Length = 670 Score = 573 bits (1476), Expect = e-161 Identities = 291/380 (76%), Positives = 329/380 (86%), Gaps = 2/380 (0%) Query: 236 LREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVP 295 +REDDV+ PVAGILDVLDNYAFVRTSGYL GP DVYVS+ VR+NGLRRGDA+TG VR P Sbjct: 290 VREDDVLVPVAGILDVLDNYAFVRTSGYLTGPTDVYVSLAQVRRNGLRRGDAITGVVRAP 349 Query: 296 REGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXXV 355 +EGEQ +R K+N LVRLD++NG E+A+ RPEF KLTPLYP V Sbjct: 350 QEGEQ--RRDKYNALVRLDTINGMEPEEARGRPEFHKLTPLYPQDRLRLETEPHMMTTRV 407 Query: 356 IDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTR 415 IDL+MPIGKGQRALIVSPPKAGKT +LQ IANAIT NNPECHLMVVLVDERPEEVTDM R Sbjct: 408 IDLVMPIGKGQRALIVSPPKAGKTMVLQSIANAITTNNPECHLMVVLVDERPEEVTDMQR 467 Query: 416 SVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPAS 475 SVKGEV+ASTFDRPP+DHT+VAEL+IERAKRLVE G DVVVLLDSITRLGRAYN A+PAS Sbjct: 468 SVKGEVVASTFDRPPADHTNVAELSIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPAS 527 Query: 476 GRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNA 535 GRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATA+VETGST DTVIFEEFKGTGNA Sbjct: 528 GRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATALVETGSTMDTVIFEEFKGTGNA 587 Query: 536 ELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMS 595 ELKLDRKIA++RVFPAVDV+ SGTRK+++LL+PDE AI+HKLRRVL + QA+DLL+ Sbjct: 588 ELKLDRKIADKRVFPAVDVDASGTRKEDILLAPDELAIMHKLRRVLHTREPQQALDLLLD 647 Query: 596 QLRKTKNNYEFLVQVSKTTP 615 +L++T+ NYEFL+Q++KT P Sbjct: 648 RLKQTRTNYEFLMQIAKTAP 667 >tr|A8M2K9|A8M2K9_SALAI Tax_Id=391037 SubName: Full=Transcription termination factor Rho;[Salinispora arenicola] Length = 688 Score = 572 bits (1474), Expect = e-161 Identities = 283/382 (74%), Positives = 334/382 (87%), Gaps = 2/382 (0%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 ++ EDDV+ PVAGI+DVLDNYAFVRT+GYLAGP+DVYVSM+ +++ GLRRGDA+TGAVR Sbjct: 308 QVSEDDVLVPVAGIIDVLDNYAFVRTTGYLAGPNDVYVSMSQIKRYGLRRGDAITGAVRA 367 Query: 295 PREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXX 354 REGEQ +R K+NPLVRLD++NG E+AK+RPEF +LTPLYP + Sbjct: 368 AREGEQ--RRDKYNPLVRLDTINGMEPEEAKRRPEFYRLTPLYPQERLRLESEPHILTTR 425 Query: 355 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMT 414 VIDL+MPIGKGQRALIVSPPKAGKT +LQ IANAIT NNPECHLMVVLVDERPEEVTDM Sbjct: 426 VIDLVMPIGKGQRALIVSPPKAGKTMVLQAIANAITHNNPECHLMVVLVDERPEEVTDMQ 485 Query: 415 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 474 RSVKGEVIA+TFDRPP DHT+VAELAIERAKRLVE G DVVVLLDS+TRLGR+YN A+PA Sbjct: 486 RSVKGEVIAATFDRPPQDHTTVAELAIERAKRLVELGHDVVVLLDSVTRLGRSYNLAAPA 545 Query: 475 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 534 SGRI+SGG+DSTALYPPKRFLGAARNIE GGSLTI+ATA+VETGS DTVIFEEFKGTGN Sbjct: 546 SGRIMSGGIDSTALYPPKRFLGAARNIENGGSLTILATALVETGSMADTVIFEEFKGTGN 605 Query: 535 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 594 AELKLDRKIA++R FPA+D++PSGTRK+E+LL+P+E AIVHKLR+VL LDS A+DLL+ Sbjct: 606 AELKLDRKIADKRTFPAIDIHPSGTRKEEILLAPEELAIVHKLRKVLHSLDSQAALDLLL 665 Query: 595 SQLRKTKNNYEFLVQVSKTTPG 616 +L++++ N EFL+Q++K+TPG Sbjct: 666 DRLKQSRTNIEFLMQIAKSTPG 687 Score = 49.3 bits (116), Expect = 0.002 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 11/93 (11%) Query: 31 TAAPTG------ALATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFR--DRANGTPA 82 TAAPT L+ M+LPEL++LA +G+ GT+ MRK ELI+AI E + A GTP Sbjct: 20 TAAPTRRRRSGTGLSAMLLPELQSLAASLGISGTARMRKGELISAITERQGGGAATGTP- 78 Query: 83 AAEPTSDSGEQKSSASTEAPAVNEATKDAPQQE 115 P ++ + A E A + + P+ E Sbjct: 79 --RPRAEVAAAAALAREEVHAEVRESGERPEAE 109 >tr|Q2J6L8|Q2J6L8_FRASC Tax_Id=106370 SubName: Full=Transcription termination factor Rho; Flags: Precursor;[Frankia sp.] Length = 698 Score = 569 bits (1467), Expect = e-160 Identities = 289/380 (76%), Positives = 329/380 (86%), Gaps = 2/380 (0%) Query: 236 LREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVP 295 LREDDV+ PVAGILDVLDNYAFVRTSGYL GP DVYVS+ VR+NGLRRGDA+TG VR P Sbjct: 318 LREDDVLVPVAGILDVLDNYAFVRTSGYLTGPTDVYVSLAQVRRNGLRRGDAITGVVRAP 377 Query: 296 REGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXXV 355 +EGEQ +R K+N LVRLD++NG E+A+ RPEF KLTPLYP + V Sbjct: 378 QEGEQ--RRDKYNALVRLDTINGMEPEEARGRPEFTKLTPLYPQERLRLETEPHMLTTRV 435 Query: 356 IDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTR 415 IDL+MPIGKGQRALIVSPPKAGKT +LQ IANAIT NNPE HLMVVL+DERPEEVTDM R Sbjct: 436 IDLVMPIGKGQRALIVSPPKAGKTMVLQSIANAITTNNPEVHLMVVLIDERPEEVTDMQR 495 Query: 416 SVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPAS 475 SVKGEVIASTFDRPP+DHT+VAEL+IERAKRLVE G DVVVLLDSITRLGRAYN A+PAS Sbjct: 496 SVKGEVIASTFDRPPADHTNVAELSIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPAS 555 Query: 476 GRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNA 535 GRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATA+VETGST DTVIFEEFKGTGNA Sbjct: 556 GRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATALVETGSTMDTVIFEEFKGTGNA 615 Query: 536 ELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMS 595 ELKLDRKIA++R+FPAVDV+ SGTRK+E+LL+PDE I+HKLRRVL ++ QA++LL+ Sbjct: 616 ELKLDRKIADKRIFPAVDVDASGTRKEEILLAPDELVIMHKLRRVLHTRETQQALELLLD 675 Query: 596 QLRKTKNNYEFLVQVSKTTP 615 +L++T+ NYEFL+Q++KT P Sbjct: 676 RLKQTRTNYEFLMQIAKTAP 695 Score = 55.5 bits (132), Expect = 2e-05 Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 2/64 (3%) Query: 38 LATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANG--TPAAAEPTSDSGEQKS 95 L+ M+LPEL+A+A+ +G++G +RK +LIAAIQ ++ + TP AA P + S S Sbjct: 11 LSAMLLPELQAMASSLGIQGVGRLRKGQLIAAIQNVQNNESAAVTPVAAAPATSSASAAS 70 Query: 96 SAST 99 +AST Sbjct: 71 TAST 74 >tr|C4RQ92|C4RQ92_9ACTO Tax_Id=219305 SubName: Full=Transcription termination factor Rho;[Micromonospora sp. ATCC 39149] Length = 690 Score = 569 bits (1467), Expect = e-160 Identities = 280/382 (73%), Positives = 334/382 (87%), Gaps = 2/382 (0%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 ++ EDDV+ PVAGI+DVLDNYAFVRT+GYLAGP+DVYVSM+ +++ GLRRGDA+TGAVR Sbjct: 310 QVSEDDVLVPVAGIIDVLDNYAFVRTTGYLAGPNDVYVSMSQIKRYGLRRGDAITGAVRT 369 Query: 295 PREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXX 354 R+GEQ +R K+NPLVRLD++NG ++A++RPEF KLTPLYP + Sbjct: 370 ARDGEQ--RRDKYNPLVRLDTINGMEPDEARRRPEFYKLTPLYPQERLRLETEPHILTTR 427 Query: 355 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMT 414 VIDL+MPIGKGQRALIVSPPKAGKT +LQ IANAIT NNPECHLMVVLVDERPEEVTDM Sbjct: 428 VIDLVMPIGKGQRALIVSPPKAGKTMVLQAIANAITHNNPECHLMVVLVDERPEEVTDMQ 487 Query: 415 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 474 RSVKGEVIA+TFDRPP DHT+VAELAIERAKRLVE G DVVVLLDS+TRLGR+YN A+PA Sbjct: 488 RSVKGEVIAATFDRPPQDHTTVAELAIERAKRLVELGHDVVVLLDSVTRLGRSYNLAAPA 547 Query: 475 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 534 SGRI+SGG+DSTALYPPKRFLGAARNIE GGSLTI+ATA+VETGS DTVIFEEFKGTGN Sbjct: 548 SGRIMSGGIDSTALYPPKRFLGAARNIENGGSLTILATALVETGSMADTVIFEEFKGTGN 607 Query: 535 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 594 AELKLDRKIA++R FPA+D++PSGTRK+E+LL+P+E AI+HKLR+VL LDS A+DLL+ Sbjct: 608 AELKLDRKIADKRTFPAIDIHPSGTRKEEILLAPEELAIIHKLRKVLHSLDSQAALDLLL 667 Query: 595 SQLRKTKNNYEFLVQVSKTTPG 616 +L++++ N EFL+Q++K+TPG Sbjct: 668 DRLKQSRTNIEFLMQIAKSTPG 689 Score = 48.5 bits (114), Expect = 0.003 Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 13/93 (13%) Query: 32 AAPTG------ALATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPAAAE 85 AAPT L+ M+LPEL++LA +G+ GT+ MRK ELI+AI E G AA Sbjct: 21 AAPTRRRRSGTGLSAMLLPELQSLAASLGISGTARMRKGELISAISE----RQGGAAAGT 76 Query: 86 PTSDSGEQKSSASTEAPAVNEATKDAPQQEQNA 118 P + +A+ APA E + Q +A Sbjct: 77 PRP---RAEVAAAAAAPAREEVRAEVSQAPSSA 106 >tr|Q6NHU1|Q6NHU1_CORDI Tax_Id=1717 (rho)SubName: Full=Transcription termination factor Rho homolog;[Corynebacterium diphtheriae] Length = 687 Score = 569 bits (1466), Expect = e-160 Identities = 299/387 (77%), Positives = 331/387 (85%), Gaps = 6/387 (1%) Query: 235 ELREDDVVQPVAGILDVLDN-YAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVR 293 E RED+V+Q VAGILD++DN AFVRTSGY AG DVYV+ M+R+ GLR GDA+ G VR Sbjct: 293 EPREDEVLQNVAGILDIVDNNVAFVRTSGYHAGAADVYVNNQMIRRLGLRSGDAIVGQVR 352 Query: 294 VPREGE-----QPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXX 348 + E + RQK+NPLVR+DSVNG +VE+AK RPEF KLTPLYPNQ Sbjct: 353 MNGENNHGGHNRGRNRQKYNPLVRVDSVNGMTVEEAKARPEFAKLTPLYPNQRLRLETEP 412 Query: 349 XXXXXXVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPE 408 VIDLIMPIGKGQRALIVSPPKAGKTTILQ+IANAI NNPEC+LMVVLVDERPE Sbjct: 413 KVLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNNPECYLMVVLVDERPE 472 Query: 409 EVTDMTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAY 468 EVTDM RSVKGEVIASTFDRPPS+HT+VAELAIERAKRLVEQG+DVVVLLDSITRLGRAY Sbjct: 473 EVTDMQRSVKGEVIASTFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRLGRAY 532 Query: 469 NNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEE 528 NN+SPASGRILSGGVDS ALYPPKRFLGAARNIE GGSLTIIATAMVETGS GDTVIFEE Sbjct: 533 NNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFEE 592 Query: 529 FKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQ 588 FKGTGNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLL+P+E I+HKLRR+LS LD+ Q Sbjct: 593 FKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLAPEEARIMHKLRRMLSALDNQQ 652 Query: 589 AIDLLMSQLRKTKNNYEFLVQVSKTTP 615 AIDLL+ QL+KTK+N EFL+QV+ + P Sbjct: 653 AIDLLIKQLKKTKSNGEFLMQVASSAP 679 Score = 54.7 bits (130), Expect = 4e-05 Identities = 39/79 (49%), Positives = 48/79 (60%), Gaps = 11/79 (13%) Query: 38 LATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPAAAEPTS--DSGEQKS 95 LA + LPELR +A ++G+KGTS +RK +LIAAI NGT +AA PTS S E K+ Sbjct: 12 LAALRLPELRKIAAEMGLKGTSALRKGDLIAAI-------NGT-SAAHPTSVAPSEENKA 63 Query: 96 SA-STEAPAVNEATKDAPQ 113 A E PA ATK Q Sbjct: 64 DAPKKERPARRRATKHVAQ 82 >tr|Q0RD98|Q0RD98_FRAAA Tax_Id=326424 (rho)SubName: Full=Transcription termination factor rho;[Frankia alni] Length = 791 Score = 563 bits (1452), Expect = e-158 Identities = 286/380 (75%), Positives = 329/380 (86%), Gaps = 2/380 (0%) Query: 236 LREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVP 295 +REDDV+ PVAGILDVLDNYAFVRTSGYL GP DVYVS+ VR+NGLRRGDA+TG VR P Sbjct: 411 VREDDVLVPVAGILDVLDNYAFVRTSGYLTGPTDVYVSLAQVRRNGLRRGDAITGVVRAP 470 Query: 296 REGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXXV 355 +EGEQ +R K+N LVRLD++NG E+A+ RPEF KLTPLYP + V Sbjct: 471 QEGEQ--RRDKYNALVRLDTINGMEPEEARGRPEFTKLTPLYPQERLRMETEPHLLTTRV 528 Query: 356 IDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMTR 415 IDL+MPIGKGQRALIVSPPKAGKT +LQ IANAIT NNPE HLMVVLVDERPEEVTDM R Sbjct: 529 IDLVMPIGKGQRALIVSPPKAGKTMVLQSIANAITTNNPEVHLMVVLVDERPEEVTDMQR 588 Query: 416 SVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPAS 475 SVKGEVIASTFDRPP+DHT+VAEL+IERAKRLVE G DVVVLLDSITRLGRAYN A+PAS Sbjct: 589 SVKGEVIASTFDRPPADHTNVAELSIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPAS 648 Query: 476 GRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGNA 535 GRILSGGVDSTALYPPKRFLGAARNIE GGSLTIIATA+VETGST DTVIFEEFKGTGNA Sbjct: 649 GRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIATALVETGSTMDTVIFEEFKGTGNA 708 Query: 536 ELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLMS 595 ELKLDRKIA++R+FPAVDV+ S TRK+E+LL+P+E +I+HKLRRVL ++ QA++LL+ Sbjct: 709 ELKLDRKIADKRIFPAVDVDASSTRKEEILLAPEELSIMHKLRRVLHTRENQQALELLLD 768 Query: 596 QLRKTKNNYEFLVQVSKTTP 615 +L++++ NYEFL+Q++KT P Sbjct: 769 RLKQSRTNYEFLMQIAKTAP 788 Score = 51.2 bits (121), Expect = 4e-04 Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 2/68 (2%) Query: 38 LATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFR--DRANGTPAAAEPTSDSGEQKS 95 L+ M+LPEL+++A+ +G++G +RK +LIAAIQ + + A G+ A+A T + Sbjct: 73 LSAMLLPELQSMASSMGIQGVGRLRKGQLIAAIQNLQNGEAAGGSTASAPTTDQAPVAPI 132 Query: 96 SASTEAPA 103 A +EAPA Sbjct: 133 PAPSEAPA 140 >tr|C4DMQ6|C4DMQ6_9ACTO Tax_Id=446470 SubName: Full=Transcription termination factor Rho;[Stackebrandtia nassauensis DSM 44728] Length = 629 Score = 559 bits (1440), Expect = e-157 Identities = 283/391 (72%), Positives = 330/391 (84%), Gaps = 6/391 (1%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 ++ EDDV+ PVAGI+D+LDNYAF+RT+GYLAGP DVYVSM+ VRK GLRRGDAVTG V+ Sbjct: 239 QVNEDDVLVPVAGIVDILDNYAFLRTTGYLAGPTDVYVSMSQVRKYGLRRGDAVTGMVKA 298 Query: 295 PREGEQPN------QRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXX 348 PRE + N +R+K+NPL+RLD+VNG E A+KRP+F KLTPLYP Q Sbjct: 299 PREDDGGNNNNGGKRREKYNPLMRLDTVNGTEPEQARKRPDFYKLTPLYPQQRLRLETEA 358 Query: 349 XXXXXXVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPE 408 +IDL+ PIGKGQRALIVSPPKAGKT +LQ IANAIT NNPECHLMVVLVDERPE Sbjct: 359 HLMTTRIIDLVTPIGKGQRALIVSPPKAGKTMVLQAIANAITANNPECHLMVVLVDERPE 418 Query: 409 EVTDMTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAY 468 EVTDM RSVKGEVI+STFDR PSDHT+VAEL+IERAKRLVE G DVVVLLDSITRLGRAY Sbjct: 419 EVTDMQRSVKGEVISSTFDRHPSDHTTVAELSIERAKRLVELGHDVVVLLDSITRLGRAY 478 Query: 469 NNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEE 528 NNA+PASGRILSGG+DSTALYPPK+FLGAARNIE GGSLTIIATA+VETGS GDTVI+EE Sbjct: 479 NNATPASGRILSGGIDSTALYPPKKFLGAARNIENGGSLTIIATALVETGSMGDTVIYEE 538 Query: 529 FKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQ 588 FKGTGN+EL LDRKIAE+R++PAVDV+ S TRKD+L++ PDE AI+ KLRRVLS L+S Q Sbjct: 539 FKGTGNSELHLDRKIAEKRIYPAVDVDRSSTRKDDLMMGPDEAAIMVKLRRVLSSLESQQ 598 Query: 589 AIDLLMSQLRKTKNNYEFLVQVSKTTPGNMD 619 I+LL+ +L+K+ N EFL+ ++K+TPGN D Sbjct: 599 GIELLLDRLKKSSTNAEFLMNIAKSTPGNSD 629 Score = 52.4 bits (124), Expect = 2e-04 Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Query: 38 LATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQKSSA 97 +A+M++PEL+ LAN +G+ MRK+ELI AIQ+ ++ + P+ P D E K+ A Sbjct: 30 MASMLMPELQQLANSLGIPSIGRMRKSELITAIQDRQNSNSAQPSL--PDVDVAEDKAPA 87 Query: 98 STEAPAVNEATKDAPQQEQNA 118 +TE+ + P Q + + Sbjct: 88 ATESKSRRATRSAGPPQPRRS 108 >tr|Q8FQ32|Q8FQ32_COREF Tax_Id=152794 SubName: Full=Putative transcription termination factor Rho;[Corynebacterium efficiens] Length = 779 Score = 556 bits (1432), Expect = e-156 Identities = 291/395 (73%), Positives = 330/395 (83%), Gaps = 10/395 (2%) Query: 237 REDDVVQPVAGILDVLD-NYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVP 295 + DD +Q VAGILD++D N AFVRT+GY P DV+V+ ++R+ GLR GDA+ G VR+ Sbjct: 381 QNDDQLQNVAGILDIVDTNVAFVRTTGYHPAPSDVFVNNQLIRRMGLRSGDAIVGQVRMN 440 Query: 296 REGEQPNQ--------RQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXX 347 + G Q + RQK+N LVR++++NG VE+A+ RPEF KLTPLYPNQ Sbjct: 441 QGGNQGGRQGGHGGRNRQKYNNLVRVETINGLPVEEARNRPEFNKLTPLYPNQRLRLETE 500 Query: 348 XXXXXXXVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERP 407 VIDLIMPIGKGQRALIVSPPKAGKTTILQ+IANAI NNPEC+LMVVLVDERP Sbjct: 501 PKILTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNNPECYLMVVLVDERP 560 Query: 408 EEVTDMTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRA 467 EEVTDM RSVKGEVIASTFDRPPS+HT+VAELAIERAKRLVEQG+DVVVLLDSITRLGRA Sbjct: 561 EEVTDMQRSVKGEVIASTFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRLGRA 620 Query: 468 YNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFE 527 YNN+SPASGRILSGGVDS ALYPPKRFLGAARNIE GGSLTIIATAMVETGS GDTVIFE Sbjct: 621 YNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFE 680 Query: 528 EFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSH 587 EFKGTGNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLL+PDE I+HKLRR+LS LD+ Sbjct: 681 EFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLNPDEARIMHKLRRILSALDNQ 740 Query: 588 QAIDLLMSQLRKTKNNYEFLVQVSKTTP-GNMDND 621 QAIDLL+ QL+KTK+N EFL+QV+ + P +ND Sbjct: 741 QAIDLLIKQLKKTKSNAEFLMQVASSAPMAGSEND 775 Score = 57.4 bits (137), Expect = 6e-06 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 5/90 (5%) Query: 30 NTAAPTGALATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPAAAEPTSD 89 NTAA G L + LPELR +A ++G++G S +RK +LI AI R+ G+P A+PT Sbjct: 65 NTAANQGDLTALRLPELRKIAGELGLRGVSALRKGDLINAIA--TARSGGSP--AQPTQQ 120 Query: 90 SGEQKSSASTEAPAVNEATK-DAPQQEQNA 118 +G K + + A AT+ AP++ A Sbjct: 121 AGPAKDAPAAPATRTRRATRTSAPEKGAEA 150 >tr|C8NKZ7|C8NKZ7_COREF Tax_Id=196164 (rho)SubName: Full=Transcription termination factor Rho;[Corynebacterium efficiens YS-314] Length = 736 Score = 556 bits (1432), Expect = e-156 Identities = 291/395 (73%), Positives = 330/395 (83%), Gaps = 10/395 (2%) Query: 237 REDDVVQPVAGILDVLD-NYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVP 295 + DD +Q VAGILD++D N AFVRT+GY P DV+V+ ++R+ GLR GDA+ G VR+ Sbjct: 338 QNDDQLQNVAGILDIVDTNVAFVRTTGYHPAPSDVFVNNQLIRRMGLRSGDAIVGQVRMN 397 Query: 296 REGEQPNQ--------RQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXX 347 + G Q + RQK+N LVR++++NG VE+A+ RPEF KLTPLYPNQ Sbjct: 398 QGGNQGGRQGGHGGRNRQKYNNLVRVETINGLPVEEARNRPEFNKLTPLYPNQRLRLETE 457 Query: 348 XXXXXXXVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERP 407 VIDLIMPIGKGQRALIVSPPKAGKTTILQ+IANAI NNPEC+LMVVLVDERP Sbjct: 458 PKILTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNNPECYLMVVLVDERP 517 Query: 408 EEVTDMTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRA 467 EEVTDM RSVKGEVIASTFDRPPS+HT+VAELAIERAKRLVEQG+DVVVLLDSITRLGRA Sbjct: 518 EEVTDMQRSVKGEVIASTFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRLGRA 577 Query: 468 YNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFE 527 YNN+SPASGRILSGGVDS ALYPPKRFLGAARNIE GGSLTIIATAMVETGS GDTVIFE Sbjct: 578 YNNSSPASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFE 637 Query: 528 EFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSH 587 EFKGTGNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLL+PDE I+HKLRR+LS LD+ Sbjct: 638 EFKGTGNAELKLDRKISERRVFPAVDVNPSGTRKDELLLNPDEARIMHKLRRILSALDNQ 697 Query: 588 QAIDLLMSQLRKTKNNYEFLVQVSKTTP-GNMDND 621 QAIDLL+ QL+KTK+N EFL+QV+ + P +ND Sbjct: 698 QAIDLLIKQLKKTKSNAEFLMQVASSAPMAGSEND 732 Score = 57.4 bits (137), Expect = 6e-06 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 5/90 (5%) Query: 30 NTAAPTGALATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPAAAEPTSD 89 NTAA G L + LPELR +A ++G++G S +RK +LI AI R+ G+P A+PT Sbjct: 22 NTAANQGDLTALRLPELRKIAGELGLRGVSALRKGDLINAIA--TARSGGSP--AQPTQQ 77 Query: 90 SGEQKSSASTEAPAVNEATK-DAPQQEQNA 118 +G K + + A AT+ AP++ A Sbjct: 78 AGPAKDAPAAPATRTRRATRTSAPEKGAEA 107 >tr|A4QDG0|A4QDG0_CORGB Tax_Id=340322 SubName: Full=Putative uncharacterized protein;[Corynebacterium glutamicum] Length = 760 Score = 555 bits (1429), Expect = e-156 Identities = 289/383 (75%), Positives = 324/383 (84%), Gaps = 5/383 (1%) Query: 238 EDDVVQPVAGILDVLD-NYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPR 296 + D +Q VAGILD++D N AFVRT+GY A P DV+VS ++R+ GLR GDA+ G VR+ + Sbjct: 367 QQDELQQVAGILDIVDHNVAFVRTTGYHAAPSDVFVSNQLIRRMGLRSGDAIEGQVRMNQ 426 Query: 297 EGEQPNQ----RQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXX 352 G N RQK+N LVR++ VNG E+ + RPEFGKLTPLYPNQ Sbjct: 427 GGGNHNNHGRNRQKYNNLVRVEMVNGLPAEETRNRPEFGKLTPLYPNQRLRLETEQKILT 486 Query: 353 XXVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTD 412 VIDLIMPIGKGQRALIVSPPKAGKTTILQ+IANAI+ NNPEC+LMVVLVDERPEEVTD Sbjct: 487 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAISTNNPECYLMVVLVDERPEEVTD 546 Query: 413 MTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 472 M RSV GEVIASTFDRPPS+HT+VAELAIERAKRLVEQG+DVVVLLDSITRLGRAYNN+S Sbjct: 547 MQRSVNGEVIASTFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRLGRAYNNSS 606 Query: 473 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 532 PASGRILSGGVDS ALYPPKRFLGAARNIE GGSLTIIATAMVETGS GDTVIFEEFKGT Sbjct: 607 PASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFEEFKGT 666 Query: 533 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 592 GNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLL+PDE I+HKLRR+LS LD+ QAIDL Sbjct: 667 GNAELKLDRKISERRVFPAVDVNPSGTRKDELLLNPDEARIMHKLRRILSALDNQQAIDL 726 Query: 593 LMSQLRKTKNNYEFLVQVSKTTP 615 L+ QL+KTK+N EFL+QV+ + P Sbjct: 727 LIKQLKKTKSNAEFLMQVASSAP 749 Score = 57.0 bits (136), Expect = 7e-06 Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 4/90 (4%) Query: 30 NTAAPTGALATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTP-AAAEPTS 88 NTAA G L + LP+LR +A +G+KGTS +RK +LI AI R+ G P AAA+ TS Sbjct: 6 NTAANQGELTALRLPDLRKIAADLGLKGTSALRKGDLINAISAARE---GKPTAAAKKTS 62 Query: 89 DSGEQKSSASTEAPAVNEATKDAPQQEQNA 118 + T+ A E ++AP Q A Sbjct: 63 PRKAPSRTRVTQPSAPVEQAQEAPAQTSTA 92 >tr|Q8NR58|Q8NR58_CORGL Tax_Id=1718 (rho)SubName: Full=Transcription termination factor; SubName: Full=Transcription termination factor Rho;[Corynebacterium glutamicum] Length = 762 Score = 553 bits (1426), Expect = e-155 Identities = 288/383 (75%), Positives = 324/383 (84%), Gaps = 5/383 (1%) Query: 238 EDDVVQPVAGILDVLD-NYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPR 296 + D +Q VAGILD++D N AFVRT+GY A P DV+VS ++R+ GLR GDA+ G VR+ + Sbjct: 369 QQDELQQVAGILDIVDHNVAFVRTTGYHAAPSDVFVSNQLIRRMGLRSGDAIEGQVRMNQ 428 Query: 297 EGEQPNQ----RQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXX 352 G N RQK+N LVR++ VNG E+ + RPEFGKLTPLYPNQ Sbjct: 429 GGGNHNNHGRNRQKYNNLVRVEMVNGLPAEETRNRPEFGKLTPLYPNQRLRLETEQKILT 488 Query: 353 XXVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTD 412 VIDLIMPIGKGQRALIVSPPKAGKTTILQ+IANAI+ NNPEC+LMVVLVDERPEEVTD Sbjct: 489 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAISTNNPECYLMVVLVDERPEEVTD 548 Query: 413 MTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 472 M RSV GEVI+STFDRPPS+HT+VAELAIERAKRLVEQG+DVVVLLDSITRLGRAYNN+S Sbjct: 549 MQRSVNGEVISSTFDRPPSEHTAVAELAIERAKRLVEQGQDVVVLLDSITRLGRAYNNSS 608 Query: 473 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 532 PASGRILSGGVDS ALYPPKRFLGAARNIE GGSLTIIATAMVETGS GDTVIFEEFKGT Sbjct: 609 PASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFEEFKGT 668 Query: 533 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 592 GNAELKLDRKI+ERRVFPAVDVNPSGTRKDELLL+PDE I+HKLRR+LS LD+ QAIDL Sbjct: 669 GNAELKLDRKISERRVFPAVDVNPSGTRKDELLLNPDEARIMHKLRRILSALDNQQAIDL 728 Query: 593 LMSQLRKTKNNYEFLVQVSKTTP 615 L+ QL+KTK+N EFL+QV+ + P Sbjct: 729 LIKQLKKTKSNAEFLMQVASSAP 751 Score = 58.2 bits (139), Expect = 3e-06 Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 4/90 (4%) Query: 30 NTAAPTGALATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTP-AAAEPTS 88 NTAA G L + LP+LR +A +G+KGTS +RK +LI AI R+ G P AAA+ TS Sbjct: 6 NTAANQGELTALRLPDLRKIAADLGLKGTSALRKGDLINAISAARE---GKPTAAAKKTS 62 Query: 89 DSGEQKSSASTEAPAVNEATKDAPQQEQNA 118 + +T+ A E ++AP Q A Sbjct: 63 PRKAPSRTRATQPSAPVEQAQEAPAQTSTA 92 >tr|C5VE12|C5VE12_9CORY Tax_Id=553207 (rho)SubName: Full=Transcription termination factor Rho;[Corynebacterium matruchotii ATCC 14266] Length = 660 Score = 553 bits (1426), Expect = e-155 Identities = 291/379 (76%), Positives = 322/379 (84%), Gaps = 6/379 (1%) Query: 239 DDVVQPVAGILDVLDN-YAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRVPRE 297 DD +Q VAGILDV+DN AFVRTSGY AGP DVYV+ MVR+ GLR GDA+TG+VR+ Sbjct: 271 DDQLQVVAGILDVVDNNVAFVRTSGYHAGPADVYVNSQMVRRLGLRSGDAITGSVRMTDT 330 Query: 298 GEQPNQ-----RQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXX 352 ++ N RQK+NPL R+DSVNG +VE+AK RPEF KLTPLYPNQ Sbjct: 331 NDRYNNNRGRNRQKYNPLARVDSVNGMTVEEAKNRPEFNKLTPLYPNQRIRLETEPGILT 390 Query: 353 XXVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTD 412 VIDLIMPIGKGQRALIVSPPKAGKTTILQ+IANAI N PEC+LMVVLVDERPEEVTD Sbjct: 391 TRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAIATNRPECYLMVVLVDERPEEVTD 450 Query: 413 MTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNAS 472 M RSVKGEVIASTFDRPP++HT+VAELAIERAKRLVEQG+DVVVLLDSITRLGRAYNN+S Sbjct: 451 MQRSVKGEVIASTFDRPPAEHTAVAELAIERAKRLVEQGQDVVVLLDSITRLGRAYNNSS 510 Query: 473 PASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGT 532 PASGRILSGGVDS ALYPPKRFLGAARNIE GGSLTIIATAMVETGS GDTVIFEEFKGT Sbjct: 511 PASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFEEFKGT 570 Query: 533 GNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDL 592 GNAELKLDRKIAERRVFPAVD+ PSGTRKDELLL+P+E ++HKLR +LS LD+ QAID Sbjct: 571 GNAELKLDRKIAERRVFPAVDIGPSGTRKDELLLAPEEARVMHKLRGILSVLDNQQAIDT 630 Query: 593 LMSQLRKTKNNYEFLVQVS 611 L++QL+K K N EFL QV+ Sbjct: 631 LIAQLKKYKTNGEFLAQVA 649 Score = 42.7 bits (99), Expect = 0.14 Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 7/79 (8%) Query: 38 LATMVLPELRALANQVGVKGTSGMRKNELIAAIQEFRDRANGTPAAAEPTSDSGEQK-SS 96 LA M LPELR LA +G+KG S +RK LIAAI N + + P +D+ K Sbjct: 12 LAAMRLPELRKLAADLGLKGVSALRKGALIAAI------TNASGDSPAPAADANAAKPRQ 65 Query: 97 ASTEAPAVNEATKDAPQQE 115 T + DAP E Sbjct: 66 TRTPRRKDTKPVDDAPAAE 84 >tr|B5HMS3|B5HMS3_9ACTO Tax_Id=463191 SubName: Full=Transcription termination factor Rho;[Streptomyces sviceus ATCC 29083] Length = 680 Score = 551 bits (1419), Expect = e-154 Identities = 281/387 (72%), Positives = 324/387 (83%), Gaps = 5/387 (1%) Query: 235 ELREDDVVQPVAGILDVLDNYAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVRV 294 ++ EDDV+ PVAGILD+LDNYAF+RTSGYL GP+DVYVS+ VRKNGLR+GD +TGAVR Sbjct: 297 QINEDDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHITGAVRQ 356 Query: 295 PREGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXXXXXXX 354 P+EGE+ R+KFN LVRLDSVNG + E + RPEF KLTPLYP Sbjct: 357 PKEGER---REKFNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLETDPGVLTTR 413 Query: 355 VIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEEVTDMT 414 +IDL+ PIGKGQR LIV+PPK GKT I+Q IANAIT NNPECHLMVVLVDERPEEVTDM Sbjct: 414 IIDLVAPIGKGQRGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQ 473 Query: 415 RSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPA 474 RSVKGEVI+STFDRP DHT+VAELAIERAKRLVE G DVVVLLDSITRLGRAYN A+PA Sbjct: 474 RSVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPA 533 Query: 475 SGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEFKGTGN 534 SGRILSGGVDSTALYPPKRF GAARNIE+GGSLTI+ATA+V+TGS D VIFEEFKGTGN Sbjct: 534 SGRILSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGN 593 Query: 535 AELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQAIDLLM 594 AELKLDRK+A++R+FPAVDV+ SGTRK+E+LL+PDE IV KLRRVL LD QA++LL+ Sbjct: 594 AELKLDRKLADKRIFPAVDVDASGTRKEEILLAPDELGIVWKLRRVLHALDQQQAVELLL 653 Query: 595 SQLRKTKNNYEFLVQVSKT--TPGNMD 619 ++++TK+N EFL+Q+ KT TPGN D Sbjct: 654 DKMKQTKSNAEFLMQIQKTTPTPGNGD 680 Score = 47.4 bits (111), Expect = 0.006 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 20/83 (24%) Query: 41 MVLPELRALANQVGVKGTSGMRKNELIAAIQEFR-------DRANGTPA--AAEP----- 86 MVL EL+ +A+ +G+KGT+ MRK++LI I+E + +A +PA AAE Sbjct: 43 MVLAELQQVASGLGIKGTARMRKSQLIEVIKEAQAGGGAAAPKAASSPAGDAAETKPKRR 102 Query: 87 ------TSDSGEQKSSASTEAPA 103 T D+ E+K+ A TEAPA Sbjct: 103 ATSKARTGDAAEKKAEAKTEAPA 125 >tr|C2BQU0|C2BQU0_9CORY Tax_Id=525264 (rho)SubName: Full=Transcription termination factor Rho;[Corynebacterium pseudogenitalium ATCC 33035] Length = 615 Score = 548 bits (1411), Expect = e-153 Identities = 292/392 (74%), Positives = 327/392 (83%), Gaps = 6/392 (1%) Query: 235 ELREDDVVQPVAGILDVLDN-YAFVRTSGYLAGPHDVYVSMNMVRKNGLRRGDAVTGAVR 293 ++RE D +Q V GILDV+DN AF+RT+GY A DV+V+ +VR+ GLR GDA+TG V+ Sbjct: 220 QVREGDELQAVGGILDVVDNNVAFLRTTGYRAAASDVFVNNGIVRRLGLRSGDAITGQVK 279 Query: 294 VP----REGEQPNQRQKFNPLVRLDSVNGGSVEDAKKRPEFGKLTPLYPNQXXXXXXXXX 349 V G N+R K+N LV++D+VNG E AK+RP F KLTPLYPN+ Sbjct: 280 VSGPTHTHGNGRNRR-KYNQLVQVDTVNGIDPEGAKQRPHFNKLTPLYPNKRLRLETDPK 338 Query: 350 XXXXXVIDLIMPIGKGQRALIVSPPKAGKTTILQDIANAITKNNPECHLMVVLVDERPEE 409 VIDLIMPIGKGQRALIVSPPKAGKTTILQ+IANAI+ NNPEC+LMVVLVDERPEE Sbjct: 339 ILTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQNIANAISTNNPECYLMVVLVDERPEE 398 Query: 410 VTDMTRSVKGEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN 469 VTDM RSV GEVIASTFDRPPS+HTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN Sbjct: 399 VTDMQRSVNGEVIASTFDRPPSEHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYN 458 Query: 470 NASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEF 529 N+SPASGRILSGGVDS ALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEF Sbjct: 459 NSSPASGRILSGGVDSNALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDTVIFEEF 518 Query: 530 KGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFAIVHKLRRVLSGLDSHQA 589 KGTGNAELKLDR I+ERRVFPAVDVNPSGTRKDELLL P+E I+ KLRR+LS LDSHQA Sbjct: 519 KGTGNAELKLDRGISERRVFPAVDVNPSGTRKDELLLVPEEARIMTKLRRILSALDSHQA 578 Query: 590 IDLLMSQLRKTKNNYEFLVQVSKTTPGNMDND 621 IDLL+ QL+KT++N EFL+QV+ + P D D Sbjct: 579 IDLLIKQLKKTRSNGEFLMQVASSAPMAADKD 610 Score = 42.0 bits (97), Expect = 0.25 Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 7/93 (7%) Query: 30 NTAAPTGALATMVLPELRALANQVGVKGTSGMRKNELIAAIQEF----RDRANGTPAAAE 85 NTAA LA++ LPELR +A + G++G S +RK +LI AI+ + +A AA Sbjct: 6 NTAAQD--LASLKLPELRKMAAERGLRGVSALRKGDLITAIKTGKVPPKAKAKVERAARV 63 Query: 86 PTSDSGEQKSSA-STEAPAVNEATKDAPQQEQN 117 ++ E+ A ++A K A +QE++ Sbjct: 64 EKAEKAEKPEKVDKPRTKAQDDAPKKAEKQEES 96 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.312 0.130 0.359 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 3,742,809,270 Number of extensions: 142775240 Number of successful extensions: 421292 Number of sequences better than 10.0: 15178 Number of HSP's gapped: 408850 Number of HSP's successfully gapped: 15294 Length of query: 621 Length of database: 3,846,993,858 Length adjustment: 144 Effective length of query: 477 Effective length of database: 2,223,364,626 Effective search space: 1060544926602 Effective search space used: 1060544926602 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 84 (37.0 bits)