BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_4164 (210 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HRE0|B2HRE0_MYCMM Tax_Id=216594 SubName: Full=Conserved hyp... 175 3e-42 tr|A0PUR7|A0PUR7_MYCUA Tax_Id=362242 SubName: Full=Conserved hyp... 173 1e-41 tr|O53528|O53528_MYCTU Tax_Id=1773 SubName: Full=Probable integr... 51 7e-05 tr|C6DP20|C6DP20_MYCTK Tax_Id=478434 SubName: Full=Membrane prot... 51 7e-05 tr|A5U4T6|A5U4T6_MYCTA Tax_Id=419947 SubName: Full=Putative inte... 51 7e-05 tr|A5WPM5|A5WPM5_MYCTF Tax_Id=336982 SubName: Full=Hypothetical ... 51 7e-05 tr|A4KJ23|A4KJ23_MYCTU Tax_Id=395095 SubName: Full=Hypothetical ... 51 7e-05 tr|A2VJY9|A2VJY9_MYCTU Tax_Id=348776 SubName: Full=Putative unch... 51 7e-05 tr|Q7VEM8|Q7VEM8_MYCBO Tax_Id=1765 SubName: Full=Probable integr... 50 2e-04 tr|C1AQH1|C1AQH1_MYCBT Tax_Id=561275 SubName: Full=Putative inte... 50 2e-04 tr|A1KKU8|A1KKU8_MYCBP Tax_Id=410289 SubName: Full=Probable inte... 50 2e-04 tr|C2AJA1|C2AJA1_TSUPA Tax_Id=521096 SubName: Full=Putative thre... 48 6e-04 tr|A1SE21|A1SE21_NOCSJ Tax_Id=196162 SubName: Full=Lysine export... 35 5.3 >tr|B2HRE0|B2HRE0_MYCMM Tax_Id=216594 SubName: Full=Conserved hypothetical integral membrane protein;[Mycobacterium marinum] Length = 210 Score = 175 bits (444), Expect = 3e-42 Identities = 93/139 (66%), Positives = 93/139 (66%) Query: 52 SCVDVMYCAAAMLVGRFAGPAVEGLGSWPEXXXXXXXXXXXXXXXXXXXXXCEPATQHWQ 111 SCVDVMYCAAAMLVGRFAGPAVEGLGSWPE CEPATQHWQ Sbjct: 52 SCVDVMYCAAAMLVGRFAGPAVEGLGSWPEVIGALLLVVVAAAGIARGLRRCEPATQHWQ 111 Query: 112 SPRSSNRFAFFFGLTAINPVTLVYFTAIAATLEQXXXXXXXXXXXXXXXXXXXXXXXXXV 171 SPRSSNRFAFFFGLTAINPVTLVYFTAIAATLEQ V Sbjct: 112 SPRSSNRFAFFFGLTAINPVTLVYFTAIAATLEQSLGGGAAIAVVAGVGLASLLWQLLLV 171 Query: 172 WIGAVVGAGSTARTRRLTI 190 WIGAVVGAGSTARTRRLTI Sbjct: 172 WIGAVVGAGSTARTRRLTI 190 >tr|A0PUR7|A0PUR7_MYCUA Tax_Id=362242 SubName: Full=Conserved hypothetical integral membrane protein;[Mycobacterium ulcerans] Length = 210 Score = 173 bits (439), Expect = 1e-41 Identities = 92/139 (66%), Positives = 93/139 (66%) Query: 52 SCVDVMYCAAAMLVGRFAGPAVEGLGSWPEXXXXXXXXXXXXXXXXXXXXXCEPATQHWQ 111 SCVDVMYCAAAMLVGRFAGPAVEGLGSWPE CEPATQHWQ Sbjct: 52 SCVDVMYCAAAMLVGRFAGPAVEGLGSWPEVIGALLLVVVAAAGIARGLRRCEPATQHWQ 111 Query: 112 SPRSSNRFAFFFGLTAINPVTLVYFTAIAATLEQXXXXXXXXXXXXXXXXXXXXXXXXXV 171 SPRSS+RFAFFFGLTAINPVTLVYFTAIAATLEQ V Sbjct: 112 SPRSSDRFAFFFGLTAINPVTLVYFTAIAATLEQSLGGSAAIAVVTGVGLASLLWQLLLV 171 Query: 172 WIGAVVGAGSTARTRRLTI 190 WIGAVVGAGSTARTRRLTI Sbjct: 172 WIGAVVGAGSTARTRRLTI 190 >tr|O53528|O53528_MYCTU Tax_Id=1773 SubName: Full=Probable integral membrane protein; SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis] Length = 151 Score = 51.2 bits (121), Expect = 7e-05 Identities = 29/73 (39%), Positives = 36/73 (49%) Query: 118 RFAFFFGLTAINPVTLVYFTAIAATLEQXXXXXXXXXXXXXXXXXXXXXXXXXVWIGAVV 177 RFA FGLTAINP T VYFTA+A TL + V GA + Sbjct: 59 RFALIFGLTAINPATFVYFTAVAVTLARALRATTAIAVVVGVALASLLWQLLLVSAGAFL 118 Query: 178 GAGSTARTRRLTI 190 + +TAR RR+T+ Sbjct: 119 RSRATARVRRMTV 131 >tr|C6DP20|C6DP20_MYCTK Tax_Id=478434 SubName: Full=Membrane protein;[Mycobacterium tuberculosis] Length = 151 Score = 51.2 bits (121), Expect = 7e-05 Identities = 29/73 (39%), Positives = 36/73 (49%) Query: 118 RFAFFFGLTAINPVTLVYFTAIAATLEQXXXXXXXXXXXXXXXXXXXXXXXXXVWIGAVV 177 RFA FGLTAINP T VYFTA+A TL + V GA + Sbjct: 59 RFALIFGLTAINPATFVYFTAVAVTLARALRATTAIAVVVGVALASLLWQLLLVSAGAFL 118 Query: 178 GAGSTARTRRLTI 190 + +TAR RR+T+ Sbjct: 119 RSRATARVRRMTV 131 >tr|A5U4T6|A5U4T6_MYCTA Tax_Id=419947 SubName: Full=Putative integral membrane protein;[Mycobacterium tuberculosis] Length = 151 Score = 51.2 bits (121), Expect = 7e-05 Identities = 29/73 (39%), Positives = 36/73 (49%) Query: 118 RFAFFFGLTAINPVTLVYFTAIAATLEQXXXXXXXXXXXXXXXXXXXXXXXXXVWIGAVV 177 RFA FGLTAINP T VYFTA+A TL + V GA + Sbjct: 59 RFALIFGLTAINPATFVYFTAVAVTLARALRATTAIAVVVGVALASLLWQLLLVSAGAFL 118 Query: 178 GAGSTARTRRLTI 190 + +TAR RR+T+ Sbjct: 119 RSRATARVRRMTV 131 >tr|A5WPM5|A5WPM5_MYCTF Tax_Id=336982 SubName: Full=Hypothetical integral membrane protein;[Mycobacterium tuberculosis] Length = 151 Score = 51.2 bits (121), Expect = 7e-05 Identities = 29/73 (39%), Positives = 36/73 (49%) Query: 118 RFAFFFGLTAINPVTLVYFTAIAATLEQXXXXXXXXXXXXXXXXXXXXXXXXXVWIGAVV 177 RFA FGLTAINP T VYFTA+A TL + V GA + Sbjct: 59 RFALIFGLTAINPATFVYFTAVAVTLARALRATTAIAVVVGVALASLLWQLLLVSAGAFL 118 Query: 178 GAGSTARTRRLTI 190 + +TAR RR+T+ Sbjct: 119 RSRATARVRRMTV 131 >tr|A4KJ23|A4KJ23_MYCTU Tax_Id=395095 SubName: Full=Hypothetical integral membrane protein;[Mycobacterium tuberculosis str. Haarlem] Length = 151 Score = 51.2 bits (121), Expect = 7e-05 Identities = 29/73 (39%), Positives = 36/73 (49%) Query: 118 RFAFFFGLTAINPVTLVYFTAIAATLEQXXXXXXXXXXXXXXXXXXXXXXXXXVWIGAVV 177 RFA FGLTAINP T VYFTA+A TL + V GA + Sbjct: 59 RFALIFGLTAINPATFVYFTAVAVTLARALRATTAIAVVVGVALASLLWQLLLVSAGAFL 118 Query: 178 GAGSTARTRRLTI 190 + +TAR RR+T+ Sbjct: 119 RSRATARVRRMTV 131 >tr|A2VJY9|A2VJY9_MYCTU Tax_Id=348776 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis C] Length = 151 Score = 51.2 bits (121), Expect = 7e-05 Identities = 29/73 (39%), Positives = 36/73 (49%) Query: 118 RFAFFFGLTAINPVTLVYFTAIAATLEQXXXXXXXXXXXXXXXXXXXXXXXXXVWIGAVV 177 RFA FGLTAINP T VYFTA+A TL + V GA + Sbjct: 59 RFALIFGLTAINPATFVYFTAVAVTLARALRATTAIAVVVGVALASLLWQLLLVSAGAFL 118 Query: 178 GAGSTARTRRLTI 190 + +TAR RR+T+ Sbjct: 119 RSRATARVRRMTV 131 >tr|Q7VEM8|Q7VEM8_MYCBO Tax_Id=1765 SubName: Full=Probable integral membrane protein;[Mycobacterium bovis] Length = 151 Score = 49.7 bits (117), Expect = 2e-04 Identities = 28/73 (38%), Positives = 35/73 (47%) Query: 118 RFAFFFGLTAINPVTLVYFTAIAATLEQXXXXXXXXXXXXXXXXXXXXXXXXXVWIGAVV 177 RFA FGLT INP T VYFTA+A TL + V GA + Sbjct: 59 RFALIFGLTVINPATFVYFTAVAVTLARALRATTAIAVVVGVALASLLWQLLLVSAGAFL 118 Query: 178 GAGSTARTRRLTI 190 + +TAR RR+T+ Sbjct: 119 RSRATARVRRMTV 131 >tr|C1AQH1|C1AQH1_MYCBT Tax_Id=561275 SubName: Full=Putative integral membrane protein;[Mycobacterium bovis] Length = 151 Score = 49.7 bits (117), Expect = 2e-04 Identities = 28/73 (38%), Positives = 35/73 (47%) Query: 118 RFAFFFGLTAINPVTLVYFTAIAATLEQXXXXXXXXXXXXXXXXXXXXXXXXXVWIGAVV 177 RFA FGLT INP T VYFTA+A TL + V GA + Sbjct: 59 RFALIFGLTVINPATFVYFTAVAVTLARALRATTAIAVVVGVALASLLWQLLLVSAGAFL 118 Query: 178 GAGSTARTRRLTI 190 + +TAR RR+T+ Sbjct: 119 RSRATARVRRMTV 131 >tr|A1KKU8|A1KKU8_MYCBP Tax_Id=410289 SubName: Full=Probable integral membrane protein;[Mycobacterium bovis] Length = 151 Score = 49.7 bits (117), Expect = 2e-04 Identities = 28/73 (38%), Positives = 35/73 (47%) Query: 118 RFAFFFGLTAINPVTLVYFTAIAATLEQXXXXXXXXXXXXXXXXXXXXXXXXXVWIGAVV 177 RFA FGLT INP T VYFTA+A TL + V GA + Sbjct: 59 RFALIFGLTVINPATFVYFTAVAVTLARALRATTAIAVVVGVALASLLWQLLLVSAGAFL 118 Query: 178 GAGSTARTRRLTI 190 + +TAR RR+T+ Sbjct: 119 RSRATARVRRMTV 131 >tr|C2AJA1|C2AJA1_TSUPA Tax_Id=521096 SubName: Full=Putative threonine efflux protein;[Tsukamurella paurometabola DSM 20162] Length = 213 Score = 48.1 bits (113), Expect = 6e-04 Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 5/93 (5%) Query: 55 DVMYCAAAMLVGRFAGPAVEGLGSWPEXXXXXXXXXXXXXXXXXXXXXCEPATQHWQSPR 114 D +YC A+ G P VE G WP P + R Sbjct: 54 DFLYCVVALAAGTVVAPVVERWGRWPAAVGGVLLLVVAALTLRNAYRGRPPGEEP-DGAR 112 Query: 115 SS----NRFAFFFGLTAINPVTLVYFTAIAATL 143 + RFA FFGLT INP+ L+YF AIA L Sbjct: 113 PALTGLRRFALFFGLTIINPMPLLYFLAIAVGL 145 >tr|A1SE21|A1SE21_NOCSJ Tax_Id=196162 SubName: Full=Lysine exporter protein (LYSE/YGGA); Flags: Precursor;[Nocardioides sp.] Length = 202 Score = 35.0 bits (79), Expect = 5.3 Identities = 14/28 (50%), Positives = 19/28 (67%) Query: 112 SPRSSNRFAFFFGLTAINPVTLVYFTAI 139 S R +A F G+TA+NP T+VYF A+ Sbjct: 105 SLRPRTAYAMFLGITAVNPTTVVYFAAV 132 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.325 0.134 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 673,449,056 Number of extensions: 13543377 Number of successful extensions: 29057 Number of sequences better than 10.0: 13 Number of HSP's gapped: 29050 Number of HSP's successfully gapped: 13 Length of query: 210 Length of database: 3,846,993,858 Length adjustment: 131 Effective length of query: 79 Effective length of database: 2,369,942,265 Effective search space: 187225438935 Effective search space used: 187225438935 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 77 (34.3 bits)