BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MMAR_4216
         (255 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,275,203 sequences; 3,846,993,858 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|B2HS46|B2HS46_MYCMM Tax_Id=216594 (sigE)SubName: Full=Alterna...   499   e-139
tr|A0PVW3|A0PVW3_MYCUA Tax_Id=362242 (sigE)SubName: Full=Alterna...   497   e-139
tr|A0QCH1|A0QCH1_MYCA1 Tax_Id=243243 SubName: Full=RNA polymeras...   406   e-111
tr|Q73WV3|Q73WV3_MYCPA Tax_Id=1770 (sigE)SubName: Full=SigE;[Myc...   405   e-111
tr|O05735|O05735_MYCAV Tax_Id=1764 (sigE)SubName: Full=Extracyto...   405   e-111
tr|Q7U0C9|Q7U0C9_MYCBO Tax_Id=1765 (sigE)SubName: Full=ALTERNATI...   401   e-110
tr|O06289|O06289_MYCTU Tax_Id=1773 (sigE)SubName: Full=ALTERNATI...   401   e-110
tr|C6DUF1|C6DUF1_MYCTK Tax_Id=478434 SubName: Full=Alternative R...   401   e-110
tr|C1AML5|C1AML5_MYCBT Tax_Id=561275 (sigE)SubName: Full=RNA pol...   401   e-110
tr|A5U1R9|A5U1R9_MYCTA Tax_Id=419947 (sigE)SubName: Full=RNA pol...   401   e-110
tr|A1KI09|A1KI09_MYCBP Tax_Id=410289 (sigE)SubName: Full=Alterna...   401   e-110
tr|A5WLP9|A5WLP9_MYCTF Tax_Id=336982 SubName: Full=Alternative R...   401   e-110
tr|A4KGE5|A4KGE5_MYCTU Tax_Id=395095 SubName: Full=Alternative R...   401   e-110
tr|A2VHC1|A2VHC1_MYCTU Tax_Id=348776 SubName: Full=Alternative R...   401   e-110
tr|Q9CCA6|Q9CCA6_MYCLE Tax_Id=1769 (sigE)SubName: Full=ECF subfa...   389   e-106
tr|B8ZQZ2|B8ZQZ2_MYCLB Tax_Id=561304 (sigE)SubName: Full=ECF sub...   389   e-106
tr|Q1B4T5|Q1B4T5_MYCSS Tax_Id=164756 SubName: Full=RNA polymeras...   363   1e-98
tr|A1UKA2|A1UKA2_MYCSK Tax_Id=189918 SubName: Full=RNA polymeras...   363   1e-98
tr|A3Q3Q6|A3Q3Q6_MYCSJ Tax_Id=164757 SubName: Full=RNA polymeras...   362   2e-98
tr|A1TDM1|A1TDM1_MYCVP Tax_Id=350058 SubName: Full=RNA polymeras...   360   6e-98
tr|A0R2D4|A0R2D4_MYCS2 Tax_Id=246196 SubName: Full=Extracytoplas...   359   2e-97
tr|O05767|O05767_MYCSM Tax_Id=1772 (sigE)SubName: Full=Extracyto...   359   2e-97
tr|A4T8X0|A4T8X0_MYCGI Tax_Id=350054 SubName: Full=RNA polymeras...   358   3e-97
tr|B1MLM1|B1MLM1_MYCA9 Tax_Id=561007 SubName: Full=Probable alte...   338   3e-91
tr|Q5YQG0|Q5YQG0_NOCFA Tax_Id=37329 SubName: Full=Putative sigma...   325   3e-87
tr|Q0S3Y2|Q0S3Y2_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,...   321   4e-86
tr|C1AZL3|C1AZL3_RHOOB Tax_Id=632772 (sigE)SubName: Full=RNA pol...   321   6e-86
tr|C1A2N1|C1A2N1_RHOE4 Tax_Id=234621 (sigE)SubName: Full=Putativ...   317   1e-84
tr|C3JTT3|C3JTT3_RHOER Tax_Id=596309 SubName: Full=Sigma factor,...   317   1e-84
tr|Q49971|Q49971_MYCLE Tax_Id=1769 SubName: Full=RpoE;[Mycobacte...   299   2e-79
tr|D0L8U6|D0L8U6_GORB4 Tax_Id=526226 SubName: Full=RNA polymeras...   299   2e-79
tr|C2ARI5|C2ARI5_TSUPA Tax_Id=521096 SubName: Full=RNA polymeras...   295   4e-78
tr|A4F8J4|A4F8J4_SACEN Tax_Id=405948 SubName: Full=Putative ECF ...   278   4e-73
tr|C6WL01|C6WL01_ACTMD Tax_Id=446462 SubName: Full=RNA polymeras...   276   1e-72
tr|C7MVJ5|C7MVJ5_SACVD Tax_Id=471857 SubName: Full=RNA polymeras...   273   1e-71
tr|Q8NRD2|Q8NRD2_CORGL Tax_Id=1718 SubName: Full=DNA-directed RN...   265   5e-69
tr|A4QD85|A4QD85_CORGB Tax_Id=340322 SubName: Full=Putative unch...   265   5e-69
tr|Q6M649|Q6M649_CORGL Tax_Id=1718 (sigE)SubName: Full=PUTATIVE ...   265   5e-69
tr|C0E7D8|C0E7D8_9CORY Tax_Id=566549 SubName: Full=Putative unch...   263   2e-68
tr|Q8FQE2|Q8FQE2_COREF Tax_Id=152794 SubName: Full=Putative RNA ...   262   2e-68
tr|Q6NHY6|Q6NHY6_CORDI Tax_Id=1717 SubName: Full=Putative ECF fa...   262   2e-68
tr|C8NMR0|C8NMR0_COREF Tax_Id=196164 (sigE)SubName: Full=RNA pol...   262   2e-68
tr|C5VDT3|C5VDT3_9CORY Tax_Id=553207 SubName: Full=RNA polymeras...   260   1e-67
tr|C8XJ69|C8XJ69_NAKMY Tax_Id=479431 SubName: Full=RNA polymeras...   259   2e-67
tr|C8NVH1|C8NVH1_9CORY Tax_Id=585529 (sigE)SubName: Full=RNA pol...   259   2e-67
tr|C0XQL3|C0XQL3_9CORY Tax_Id=525263 SubName: Full=RNA polymeras...   259   2e-67
tr|C0WFJ4|C0WFJ4_9CORY Tax_Id=525260 SubName: Full=ECF family DN...   258   3e-67
tr|C2CKX7|C2CKX7_CORST Tax_Id=525268 SubName: Full=RNA polymeras...   258   6e-67
tr|C0U796|C0U796_9ACTO Tax_Id=526225 SubName: Full=RNA polymeras...   254   8e-66
tr|C3PFJ3|C3PFJ3_CORA7 Tax_Id=548476 (sigE2)SubName: Full=ECF-fa...   253   1e-65

>tr|B2HS46|B2HS46_MYCMM Tax_Id=216594 (sigE)SubName:
           Full=Alternative RNA polymerase sigma factor
           SigE;[Mycobacterium marinum]
          Length = 255

 Score =  499 bits (1285), Expect = e-139
 Identities = 246/255 (96%), Positives = 246/255 (96%)

Query: 1   MERGGRGLGNTEWQLRVAAGDELPMSDGREKPEEHXXXXXXXXXMSHPQLVRDDEWAETS 60
           MERGGRGLGNTEWQLRVAAGDELPMSDGREKPEEH         MSHPQLVRDDEWAETS
Sbjct: 1   MERGGRGLGNTEWQLRVAAGDELPMSDGREKPEEHTITTLSTTTMSHPQLVRDDEWAETS 60

Query: 61  DGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRS 120
           DGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRS
Sbjct: 61  DGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRS 120

Query: 121 VQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLG 180
           VQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLG
Sbjct: 121 VQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLG 180

Query: 181 PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 240
           PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH
Sbjct: 181 PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 240

Query: 241 PEHSELSPRLVGTAR 255
           PEHSELSPRLVGTAR
Sbjct: 241 PEHSELSPRLVGTAR 255


>tr|A0PVW3|A0PVW3_MYCUA Tax_Id=362242 (sigE)SubName:
           Full=Alternative RNA polymerase sigma factor
           SigE;[Mycobacterium ulcerans]
          Length = 255

 Score =  497 bits (1279), Expect = e-139
 Identities = 245/255 (96%), Positives = 245/255 (96%)

Query: 1   MERGGRGLGNTEWQLRVAAGDELPMSDGREKPEEHXXXXXXXXXMSHPQLVRDDEWAETS 60
           MERGGRGLGNT WQLRVAAGDELPMSDGREKPEEH         MSHPQLVRDDEWAETS
Sbjct: 1   MERGGRGLGNTAWQLRVAAGDELPMSDGREKPEEHTITTLSTTTMSHPQLVRDDEWAETS 60

Query: 61  DGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRS 120
           DGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRS
Sbjct: 61  DGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRS 120

Query: 121 VQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLG 180
           VQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLG
Sbjct: 121 VQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLG 180

Query: 181 PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 240
           PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH
Sbjct: 181 PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 240

Query: 241 PEHSELSPRLVGTAR 255
           PEHSELSPRLVGTAR
Sbjct: 241 PEHSELSPRLVGTAR 255


>tr|A0QCH1|A0QCH1_MYCA1 Tax_Id=243243 SubName: Full=RNA polymerase
           sigma-70 factor;[Mycobacterium avium]
          Length = 424

 Score =  406 bits (1043), Expect = e-111
 Identities = 204/250 (81%), Positives = 211/250 (84%)

Query: 1   MERGGRGLGNTEWQLRVAAGDELPMSDGREKPEEHXXXXXXXXXMSHPQLVRDDEWAETS 60
           M+RG R  GNTEWQL VAA DE+P+       E           MSH      D WAE S
Sbjct: 1   MDRGARETGNTEWQLPVAANDEMPLIGMPNSEELIITTLLSPSSMSHAHDPSADGWAEPS 60

Query: 61  DGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRS 120
           DGL GTAVFDATGDK AMPSWDELVRQHADRVYRLAYRLSGNQ DAEDLTQETFIRVFRS
Sbjct: 61  DGLQGTAVFDATGDKTAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRS 120

Query: 121 VQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLG 180
           VQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDY+RVPAD+PNPE+IYHDSRLG
Sbjct: 121 VQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYERVPADEPNPEEIYHDSRLG 180

Query: 181 PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 240
           PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH
Sbjct: 181 PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 240

Query: 241 PEHSELSPRL 250
           P+H  L   L
Sbjct: 241 PDHDALRASL 250


>tr|Q73WV3|Q73WV3_MYCPA Tax_Id=1770 (sigE)SubName:
           Full=SigE;[Mycobacterium paratuberculosis]
          Length = 251

 Score =  405 bits (1042), Expect = e-111
 Identities = 203/246 (82%), Positives = 210/246 (85%)

Query: 1   MERGGRGLGNTEWQLRVAAGDELPMSDGREKPEEHXXXXXXXXXMSHPQLVRDDEWAETS 60
           M+RG R  GNTEWQL VAA DE+P+       E           MSH      D WAE S
Sbjct: 1   MDRGARETGNTEWQLPVAANDEMPLIGMPNSEELIITTLLSPSSMSHAHDPSADGWAEPS 60

Query: 61  DGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRS 120
           DGL GTAVFDATGDK AMPSWDELVRQHADRVYRLAYRLSGNQ DAEDLTQETFIRVFRS
Sbjct: 61  DGLQGTAVFDATGDKTAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRS 120

Query: 121 VQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLG 180
           VQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDY+RVPAD+PNPE+IYHDSRLG
Sbjct: 121 VQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYERVPADEPNPEEIYHDSRLG 180

Query: 181 PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 240
           PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH
Sbjct: 181 PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 240

Query: 241 PEHSEL 246
           P+H  L
Sbjct: 241 PDHDAL 246


>tr|O05735|O05735_MYCAV Tax_Id=1764 (sigE)SubName:
           Full=Extracytoplasmic function alternative sigma
           factor;[Mycobacterium avium]
          Length = 251

 Score =  405 bits (1042), Expect = e-111
 Identities = 203/246 (82%), Positives = 210/246 (85%)

Query: 1   MERGGRGLGNTEWQLRVAAGDELPMSDGREKPEEHXXXXXXXXXMSHPQLVRDDEWAETS 60
           M+RG R  GNTEWQL VAA DE+P+       E           MSH      D WAE S
Sbjct: 1   MDRGARETGNTEWQLPVAANDEMPLIGMPNSEELIITTLLSPSSMSHAHDPSADGWAEPS 60

Query: 61  DGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRS 120
           DGL GTAVFDATGDK AMPSWDELVRQHADRVYRLAYRLSGNQ DAEDLTQETFIRVFRS
Sbjct: 61  DGLQGTAVFDATGDKTAMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRS 120

Query: 121 VQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLG 180
           VQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDY+RVPAD+PNPE+IYHDSRLG
Sbjct: 121 VQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYERVPADEPNPEEIYHDSRLG 180

Query: 181 PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 240
           PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH
Sbjct: 181 PDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 240

Query: 241 PEHSEL 246
           P+H  L
Sbjct: 241 PDHDAL 246


>tr|Q7U0C9|Q7U0C9_MYCBO Tax_Id=1765 (sigE)SubName: Full=ALTERNATIVE
           RNA POLYMERASE SIGMA FACTOR SIGE;[Mycobacterium bovis]
          Length = 257

 Score =  401 bits (1031), Expect = e-110
 Identities = 204/244 (83%), Positives = 210/244 (86%), Gaps = 2/244 (0%)

Query: 4   GGRGLGNTEWQLRVAAGDELPM--SDGREKPEEHXXXXXXXXXMSHPQLVRDDEWAETSD 61
           GG  +GNTE QL VA GD+LP   S   E              MSHPQ VRDD+W E SD
Sbjct: 5   GGPRVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64

Query: 62  GLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSV 121
            L GTAVFDATGDKA MPSWDELVRQHADRVYRLAYRLSGNQ DAEDLTQETFIRVFRSV
Sbjct: 65  QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124

Query: 122 QNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGP 181
           QNYQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDYDRVPAD+PNPEQIYHD+RLGP
Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184

Query: 182 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 241
           DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP
Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 244

Query: 242 EHSE 245
           EH E
Sbjct: 245 EHGE 248


>tr|O06289|O06289_MYCTU Tax_Id=1773 (sigE)SubName: Full=ALTERNATIVE
           RNA POLYMERASE SIGMA FACTOR SIGE; SubName: Full=RNA
           polymerase sigma-70 factor, ECF subfamily; SubName:
           Full=SigE;[Mycobacterium tuberculosis]
          Length = 257

 Score =  401 bits (1031), Expect = e-110
 Identities = 204/244 (83%), Positives = 210/244 (86%), Gaps = 2/244 (0%)

Query: 4   GGRGLGNTEWQLRVAAGDELPM--SDGREKPEEHXXXXXXXXXMSHPQLVRDDEWAETSD 61
           GG  +GNTE QL VA GD+LP   S   E              MSHPQ VRDD+W E SD
Sbjct: 5   GGPRVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64

Query: 62  GLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSV 121
            L GTAVFDATGDKA MPSWDELVRQHADRVYRLAYRLSGNQ DAEDLTQETFIRVFRSV
Sbjct: 65  QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124

Query: 122 QNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGP 181
           QNYQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDYDRVPAD+PNPEQIYHD+RLGP
Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184

Query: 182 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 241
           DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP
Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 244

Query: 242 EHSE 245
           EH E
Sbjct: 245 EHGE 248


>tr|C6DUF1|C6DUF1_MYCTK Tax_Id=478434 SubName: Full=Alternative RNA
           polymerase sigma factor sigE;[Mycobacterium
           tuberculosis]
          Length = 257

 Score =  401 bits (1031), Expect = e-110
 Identities = 204/244 (83%), Positives = 210/244 (86%), Gaps = 2/244 (0%)

Query: 4   GGRGLGNTEWQLRVAAGDELPM--SDGREKPEEHXXXXXXXXXMSHPQLVRDDEWAETSD 61
           GG  +GNTE QL VA GD+LP   S   E              MSHPQ VRDD+W E SD
Sbjct: 5   GGPRVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64

Query: 62  GLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSV 121
            L GTAVFDATGDKA MPSWDELVRQHADRVYRLAYRLSGNQ DAEDLTQETFIRVFRSV
Sbjct: 65  QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124

Query: 122 QNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGP 181
           QNYQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDYDRVPAD+PNPEQIYHD+RLGP
Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184

Query: 182 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 241
           DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP
Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 244

Query: 242 EHSE 245
           EH E
Sbjct: 245 EHGE 248


>tr|C1AML5|C1AML5_MYCBT Tax_Id=561275 (sigE)SubName: Full=RNA
           polymerase sigma factor;[Mycobacterium bovis]
          Length = 257

 Score =  401 bits (1031), Expect = e-110
 Identities = 204/244 (83%), Positives = 210/244 (86%), Gaps = 2/244 (0%)

Query: 4   GGRGLGNTEWQLRVAAGDELPM--SDGREKPEEHXXXXXXXXXMSHPQLVRDDEWAETSD 61
           GG  +GNTE QL VA GD+LP   S   E              MSHPQ VRDD+W E SD
Sbjct: 5   GGPRVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64

Query: 62  GLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSV 121
            L GTAVFDATGDKA MPSWDELVRQHADRVYRLAYRLSGNQ DAEDLTQETFIRVFRSV
Sbjct: 65  QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124

Query: 122 QNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGP 181
           QNYQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDYDRVPAD+PNPEQIYHD+RLGP
Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184

Query: 182 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 241
           DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP
Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 244

Query: 242 EHSE 245
           EH E
Sbjct: 245 EHGE 248


>tr|A5U1R9|A5U1R9_MYCTA Tax_Id=419947 (sigE)SubName: Full=RNA
           polymerase sigma-70 factor;[Mycobacterium tuberculosis]
          Length = 257

 Score =  401 bits (1031), Expect = e-110
 Identities = 204/244 (83%), Positives = 210/244 (86%), Gaps = 2/244 (0%)

Query: 4   GGRGLGNTEWQLRVAAGDELPM--SDGREKPEEHXXXXXXXXXMSHPQLVRDDEWAETSD 61
           GG  +GNTE QL VA GD+LP   S   E              MSHPQ VRDD+W E SD
Sbjct: 5   GGPRVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64

Query: 62  GLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSV 121
            L GTAVFDATGDKA MPSWDELVRQHADRVYRLAYRLSGNQ DAEDLTQETFIRVFRSV
Sbjct: 65  QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124

Query: 122 QNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGP 181
           QNYQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDYDRVPAD+PNPEQIYHD+RLGP
Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184

Query: 182 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 241
           DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP
Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 244

Query: 242 EHSE 245
           EH E
Sbjct: 245 EHGE 248


>tr|A1KI09|A1KI09_MYCBP Tax_Id=410289 (sigE)SubName:
           Full=Alternative RNA polymerase sigma factor
           sigE;[Mycobacterium bovis]
          Length = 257

 Score =  401 bits (1031), Expect = e-110
 Identities = 204/244 (83%), Positives = 210/244 (86%), Gaps = 2/244 (0%)

Query: 4   GGRGLGNTEWQLRVAAGDELPM--SDGREKPEEHXXXXXXXXXMSHPQLVRDDEWAETSD 61
           GG  +GNTE QL VA GD+LP   S   E              MSHPQ VRDD+W E SD
Sbjct: 5   GGPRVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64

Query: 62  GLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSV 121
            L GTAVFDATGDKA MPSWDELVRQHADRVYRLAYRLSGNQ DAEDLTQETFIRVFRSV
Sbjct: 65  QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124

Query: 122 QNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGP 181
           QNYQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDYDRVPAD+PNPEQIYHD+RLGP
Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184

Query: 182 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 241
           DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP
Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 244

Query: 242 EHSE 245
           EH E
Sbjct: 245 EHGE 248


>tr|A5WLP9|A5WLP9_MYCTF Tax_Id=336982 SubName: Full=Alternative RNA
           polymerase sigma factor sigE;[Mycobacterium
           tuberculosis]
          Length = 257

 Score =  401 bits (1031), Expect = e-110
 Identities = 204/244 (83%), Positives = 210/244 (86%), Gaps = 2/244 (0%)

Query: 4   GGRGLGNTEWQLRVAAGDELPM--SDGREKPEEHXXXXXXXXXMSHPQLVRDDEWAETSD 61
           GG  +GNTE QL VA GD+LP   S   E              MSHPQ VRDD+W E SD
Sbjct: 5   GGPRVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64

Query: 62  GLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSV 121
            L GTAVFDATGDKA MPSWDELVRQHADRVYRLAYRLSGNQ DAEDLTQETFIRVFRSV
Sbjct: 65  QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124

Query: 122 QNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGP 181
           QNYQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDYDRVPAD+PNPEQIYHD+RLGP
Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184

Query: 182 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 241
           DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP
Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 244

Query: 242 EHSE 245
           EH E
Sbjct: 245 EHGE 248


>tr|A4KGE5|A4KGE5_MYCTU Tax_Id=395095 SubName: Full=Alternative RNA
           polymerase sigma factor sigE;[Mycobacterium tuberculosis
           str. Haarlem]
          Length = 257

 Score =  401 bits (1031), Expect = e-110
 Identities = 204/244 (83%), Positives = 210/244 (86%), Gaps = 2/244 (0%)

Query: 4   GGRGLGNTEWQLRVAAGDELPM--SDGREKPEEHXXXXXXXXXMSHPQLVRDDEWAETSD 61
           GG  +GNTE QL VA GD+LP   S   E              MSHPQ VRDD+W E SD
Sbjct: 5   GGPRVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64

Query: 62  GLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSV 121
            L GTAVFDATGDKA MPSWDELVRQHADRVYRLAYRLSGNQ DAEDLTQETFIRVFRSV
Sbjct: 65  QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124

Query: 122 QNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGP 181
           QNYQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDYDRVPAD+PNPEQIYHD+RLGP
Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184

Query: 182 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 241
           DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP
Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 244

Query: 242 EHSE 245
           EH E
Sbjct: 245 EHGE 248


>tr|A2VHC1|A2VHC1_MYCTU Tax_Id=348776 SubName: Full=Alternative RNA
           polymerase sigma factor sigE;[Mycobacterium tuberculosis
           C]
          Length = 257

 Score =  401 bits (1031), Expect = e-110
 Identities = 204/244 (83%), Positives = 210/244 (86%), Gaps = 2/244 (0%)

Query: 4   GGRGLGNTEWQLRVAAGDELPM--SDGREKPEEHXXXXXXXXXMSHPQLVRDDEWAETSD 61
           GG  +GNTE QL VA GD+LP   S   E              MSHPQ VRDD+W E SD
Sbjct: 5   GGPRVGNTESQLCVADGDDLPTYCSANSEDLNITTITTLSPTSMSHPQQVRDDQWVEPSD 64

Query: 62  GLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSV 121
            L GTAVFDATGDKA MPSWDELVRQHADRVYRLAYRLSGNQ DAEDLTQETFIRVFRSV
Sbjct: 65  QLQGTAVFDATGDKATMPSWDELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSV 124

Query: 122 QNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGP 181
           QNYQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDYDRVPAD+PNPEQIYHD+RLGP
Sbjct: 125 QNYQPGTFEGWLHRITTNLFLDMVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGP 184

Query: 182 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 241
           DLQAAL SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP
Sbjct: 185 DLQAALASLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 244

Query: 242 EHSE 245
           EH E
Sbjct: 245 EHGE 248


>tr|Q9CCA6|Q9CCA6_MYCLE Tax_Id=1769 (sigE)SubName: Full=ECF
           subfamily sigma subunit;[Mycobacterium leprae]
          Length = 263

 Score =  389 bits (1000), Expect = e-106
 Identities = 198/243 (81%), Positives = 206/243 (84%), Gaps = 2/243 (0%)

Query: 1   MERGGRGLGNTEWQLRVAAGDELPMSDGREKPEEHXXXXXXXXX-MSHPQLVRDDEWAET 59
           MER GR  GNT+  LRV  GDE P  DGR  PE+           MSHP   RDD+W E 
Sbjct: 7   MEREGRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNLLSPTIMSHPPPSRDDDWVEP 66

Query: 60  SDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFR 119
            D L GTAVFDATGDKA MPSW+ELVRQHA RVY LAYRLSGNQ DAEDLTQETFIRVFR
Sbjct: 67  FDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFR 126

Query: 120 SVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRL 179
           SVQNYQPGTFEGWLHRITTNLFLDMVRRR+RIRM+ALP+DYDRVPAD+PNPEQIYHDSRL
Sbjct: 127 SVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRL 186

Query: 180 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LA 238
           GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L 
Sbjct: 187 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLT 246

Query: 239 AHP 241
           AHP
Sbjct: 247 AHP 249


>tr|B8ZQZ2|B8ZQZ2_MYCLB Tax_Id=561304 (sigE)SubName: Full=ECF
           subfamily sigma subunit;[Mycobacterium leprae]
          Length = 263

 Score =  389 bits (1000), Expect = e-106
 Identities = 198/243 (81%), Positives = 206/243 (84%), Gaps = 2/243 (0%)

Query: 1   MERGGRGLGNTEWQLRVAAGDELPMSDGREKPEEHXXXXXXXXX-MSHPQLVRDDEWAET 59
           MER GR  GNT+  LRV  GDE P  DGR  PE+           MSHP   RDD+W E 
Sbjct: 7   MEREGRWTGNTQCPLRVVPGDESPTLDGRASPEDLIITNLLSPTIMSHPPPSRDDDWVEP 66

Query: 60  SDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFR 119
            D L GTAVFDATGDKA MPSW+ELVRQHA RVY LAYRLSGNQ DAEDLTQETFIRVFR
Sbjct: 67  FDALQGTAVFDATGDKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFR 126

Query: 120 SVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRL 179
           SVQNYQPGTFEGWLHRITTNLFLDMVRRR+RIRM+ALP+DYDRVPAD+PNPEQIYHDSRL
Sbjct: 127 SVQNYQPGTFEGWLHRITTNLFLDMVRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRL 186

Query: 180 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LA 238
           GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L 
Sbjct: 187 GPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLT 246

Query: 239 AHP 241
           AHP
Sbjct: 247 AHP 249


>tr|Q1B4T5|Q1B4T5_MYCSS Tax_Id=164756 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Mycobacterium sp.]
          Length = 260

 Score =  363 bits (932), Expect = 1e-98
 Identities = 177/196 (90%), Positives = 182/196 (92%)

Query: 45  MSHPQLVRDDEWAETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQ 104
           M+H +   D +W E +D L GTAVFDATGDK  MPSWDELVRQHADRVYRLAYRLSGNQ 
Sbjct: 57  MAHLEQFSDSDWVEPTDELTGTAVFDATGDKTTMPSWDELVRQHADRVYRLAYRLSGNQH 116

Query: 105 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVP 164
           DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVP
Sbjct: 117 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVP 176

Query: 165 ADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 224
           ADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS
Sbjct: 177 ADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 236

Query: 225 RIHRGRQALRDYLAAH 240
           RIHRGRQALRD+LA H
Sbjct: 237 RIHRGRQALRDHLARH 252


>tr|A1UKA2|A1UKA2_MYCSK Tax_Id=189918 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Mycobacterium sp.]
          Length = 260

 Score =  363 bits (932), Expect = 1e-98
 Identities = 177/196 (90%), Positives = 182/196 (92%)

Query: 45  MSHPQLVRDDEWAETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQ 104
           M+H +   D +W E +D L GTAVFDATGDK  MPSWDELVRQHADRVYRLAYRLSGNQ 
Sbjct: 57  MAHLEQFSDSDWVEPTDELTGTAVFDATGDKTTMPSWDELVRQHADRVYRLAYRLSGNQH 116

Query: 105 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVP 164
           DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVP
Sbjct: 117 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVP 176

Query: 165 ADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 224
           ADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS
Sbjct: 177 ADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 236

Query: 225 RIHRGRQALRDYLAAH 240
           RIHRGRQALRD+LA H
Sbjct: 237 RIHRGRQALRDHLARH 252


>tr|A3Q3Q6|A3Q3Q6_MYCSJ Tax_Id=164757 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Mycobacterium sp.]
          Length = 253

 Score =  362 bits (929), Expect = 2e-98
 Identities = 176/196 (89%), Positives = 182/196 (92%)

Query: 45  MSHPQLVRDDEWAETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQ 104
           M+H +   D +W E +D L GTAVFDATGDK  MPSWDELVRQHADRVYRLAYRLSGNQ 
Sbjct: 50  MAHLEQFSDSDWVEPTDELTGTAVFDATGDKTTMPSWDELVRQHADRVYRLAYRLSGNQH 109

Query: 105 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVP 164
           DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVP
Sbjct: 110 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVP 169

Query: 165 ADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 224
           ADDPNPEQI+HDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS
Sbjct: 170 ADDPNPEQIFHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 229

Query: 225 RIHRGRQALRDYLAAH 240
           RIHRGRQALR+YLA H
Sbjct: 230 RIHRGRQALREYLARH 245


>tr|A1TDM1|A1TDM1_MYCVP Tax_Id=350058 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Mycobacterium
           vanbaalenii]
          Length = 269

 Score =  360 bits (925), Expect = 6e-98
 Identities = 177/198 (89%), Positives = 183/198 (92%)

Query: 45  MSHPQLVRDDEWAETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQ 104
           M+H +   D  W E +D L GTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQ 
Sbjct: 61  MAHLEQFTDAAWVEPADELTGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQH 120

Query: 105 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVP 164
           DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVP
Sbjct: 121 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVP 180

Query: 165 ADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 224
           AD+PNPEQIYHDSRLGPDLQAALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS
Sbjct: 181 ADEPNPEQIYHDSRLGPDLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 240

Query: 225 RIHRGRQALRDYLAAHPE 242
           RIHRGRQALR+YLA H +
Sbjct: 241 RIHRGRQALREYLARHSD 258


>tr|A0R2D4|A0R2D4_MYCS2 Tax_Id=246196 SubName: Full=Extracytoplasmic
           function alternative sigma factor;[Mycobacterium
           smegmatis]
          Length = 257

 Score =  359 bits (921), Expect = 2e-97
 Identities = 177/203 (87%), Positives = 183/203 (90%)

Query: 45  MSHPQLVRDDEWAETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQ 104
           M+H +   D +W E SD   GTAVFDATGD+AAMPSWDELVRQHADRVYRLAYRLSGNQ 
Sbjct: 54  MAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQH 113

Query: 105 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVP 164
           DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVP
Sbjct: 114 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVP 173

Query: 165 ADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 224
           A+DPNPEQIYHDSRLG DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS
Sbjct: 174 AEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 233

Query: 225 RIHRGRQALRDYLAAHPEHSELS 247
           RIHRGRQ LRDYLA H   +  S
Sbjct: 234 RIHRGRQQLRDYLAKHSSETAQS 256


>tr|O05767|O05767_MYCSM Tax_Id=1772 (sigE)SubName:
           Full=Extracytoplasmic function alternative sigma
           factor;[Mycobacterium smegmatis]
          Length = 204

 Score =  359 bits (921), Expect = 2e-97
 Identities = 177/203 (87%), Positives = 183/203 (90%)

Query: 45  MSHPQLVRDDEWAETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQ 104
           M+H +   D +W E SD   GTAVFDATGD+AAMPSWDELVRQHADRVYRLAYRLSGNQ 
Sbjct: 1   MAHLEQFTDSDWVEPSDEPTGTAVFDATGDQAAMPSWDELVRQHADRVYRLAYRLSGNQH 60

Query: 105 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVP 164
           DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVP
Sbjct: 61  DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVP 120

Query: 165 ADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 224
           A+DPNPEQIYHDSRLG DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS
Sbjct: 121 AEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 180

Query: 225 RIHRGRQALRDYLAAHPEHSELS 247
           RIHRGRQ LRDYLA H   +  S
Sbjct: 181 RIHRGRQQLRDYLAKHSSETAQS 203


>tr|A4T8X0|A4T8X0_MYCGI Tax_Id=350054 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Mycobacterium gilvum]
          Length = 282

 Score =  358 bits (919), Expect = 3e-97
 Identities = 176/198 (88%), Positives = 183/198 (92%)

Query: 45  MSHPQLVRDDEWAETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQ 104
           M+H +   + EW E +D L GTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQ 
Sbjct: 74  MAHREQFTEAEWVEPTDELTGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQH 133

Query: 105 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVP 164
           DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVP
Sbjct: 134 DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVP 193

Query: 165 ADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 224
           AD+PNPEQIYHDSRLG DLQAALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS
Sbjct: 194 ADEPNPEQIYHDSRLGADLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRS 253

Query: 225 RIHRGRQALRDYLAAHPE 242
           RIHRGRQALRD+LA H +
Sbjct: 254 RIHRGRQALRDHLARHSD 271


>tr|B1MLM1|B1MLM1_MYCA9 Tax_Id=561007 SubName: Full=Probable
           alternative RNA polymerase sigma factor;[Mycobacterium
           abscessus]
          Length = 256

 Score =  338 bits (868), Expect = 3e-91
 Identities = 177/239 (74%), Positives = 192/239 (80%), Gaps = 2/239 (0%)

Query: 9   GNTEWQLRVAAGDELPMSDGREKPEEHXXXXXXXXXMSHPQLVRDDEWAETSDGLLGTAV 68
           GN    + V   D LP + G     E          +S P      + A  +D L GTAV
Sbjct: 17  GNNTDGIWVEQADGLP-TGGEAAVTEQEEHAISLTRISEPDYTEFVD-AANADELSGTAV 74

Query: 69  FDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSVQNYQPGT 128
           FDATGD+AAMPSWDELVR+HADRVYRLAYRLSG+QQDAEDLTQETFIRVFRS+QNYQPGT
Sbjct: 75  FDATGDQAAMPSWDELVREHADRVYRLAYRLSGSQQDAEDLTQETFIRVFRSLQNYQPGT 134

Query: 129 FEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGPDLQAALD 188
           FEGWLHRITTNLFLDMVRRR RIRMEALPEDYDRVPA DP+PEQIYHD++LG DLQAALD
Sbjct: 135 FEGWLHRITTNLFLDMVRRRGRIRMEALPEDYDRVPATDPDPEQIYHDAQLGADLQAALD 194

Query: 189 SLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHPEHSELS 247
           SL PEFRAAVVLCDIEGLSYEEIGATL VKLGTVRSRIHRGRQA+R+YLAAH   S L+
Sbjct: 195 SLAPEFRAAVVLCDIEGLSYEEIGATLDVKLGTVRSRIHRGRQAIREYLAAHSSASALA 253


>tr|Q5YQG0|Q5YQG0_NOCFA Tax_Id=37329 SubName: Full=Putative sigma
           factor;[Nocardia farcinica]
          Length = 255

 Score =  325 bits (833), Expect = 3e-87
 Identities = 157/180 (87%), Positives = 170/180 (94%)

Query: 59  TSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVF 118
           T++ L GTA FDATGD++ MPSWDELVR+HADRVYRLAYRLSG+ QDAEDLTQETFIRVF
Sbjct: 61  TAEELSGTAAFDATGDRSVMPSWDELVREHADRVYRLAYRLSGDAQDAEDLTQETFIRVF 120

Query: 119 RSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSR 178
           RS+ NYQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDYDRVPA+ P PEQ+YHD+R
Sbjct: 121 RSLSNYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRVPAEGPGPEQVYHDAR 180

Query: 179 LGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLA 238
           L PDLQ+ALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR+YLA
Sbjct: 181 LDPDLQSALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALREYLA 240


>tr|Q0S3Y2|Q0S3Y2_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,
           sigma 70 type, group 4 (ECF);[Rhodococcus sp.]
          Length = 210

 Score =  321 bits (823), Expect = 4e-86
 Identities = 162/199 (81%), Positives = 179/199 (89%), Gaps = 3/199 (1%)

Query: 45  MSHPQLVRDDEWAET--SDG-LLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSG 101
           MS+  +  D+  A+   SD  L GTAVFDATG+K+AMPSWDELVR+H DRVYRLAYRLSG
Sbjct: 1   MSNHTMAPDERNADEQLSDAELTGTAVFDATGEKSAMPSWDELVREHGDRVYRLAYRLSG 60

Query: 102 NQQDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYD 161
           + QDAEDLTQ+TFIRVFRS+ +YQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDYD
Sbjct: 61  DAQDAEDLTQDTFIRVFRSLSDYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYD 120

Query: 162 RVPADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGT 221
           RVPAD PNPE+IYHD+RL  DLQAALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGT
Sbjct: 121 RVPADGPNPEEIYHDARLDADLQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGT 180

Query: 222 VRSRIHRGRQALRDYLAAH 240
           VRSRIHRGRQALR++LA +
Sbjct: 181 VRSRIHRGRQALREHLAVN 199


>tr|C1AZL3|C1AZL3_RHOOB Tax_Id=632772 (sigE)SubName: Full=RNA
           polymerase ECF-type sigma factor SigE;[Rhodococcus
           opacus]
          Length = 210

 Score =  321 bits (822), Expect = 6e-86
 Identities = 156/178 (87%), Positives = 169/178 (94%)

Query: 63  LLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSVQ 122
           L GTAVFDATG+K+AMPSWDELVR+H DRVYRLAYRLSG+ QDAEDLTQ+TFIRVFRS+ 
Sbjct: 22  LTGTAVFDATGEKSAMPSWDELVREHGDRVYRLAYRLSGDAQDAEDLTQDTFIRVFRSLS 81

Query: 123 NYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGPD 182
           +YQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDYDRVPAD PNPE+IYHD+RL  D
Sbjct: 82  DYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRVPADGPNPEEIYHDARLDAD 141

Query: 183 LQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAH 240
           LQAALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR++LA +
Sbjct: 142 LQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALREHLAVN 199


>tr|C1A2N1|C1A2N1_RHOE4 Tax_Id=234621 (sigE)SubName: Full=Putative
           RNA polymerase ECF-type sigma factor SigE;[Rhodococcus
           erythropolis]
          Length = 273

 Score =  317 bits (811), Expect = 1e-84
 Identities = 154/177 (87%), Positives = 168/177 (94%)

Query: 63  LLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSVQ 122
           L+GTAVFDATG+K++MPSWDELVRQH DRVYRLAYRLSG+ QDAEDLTQ+TFIRVFRS+ 
Sbjct: 86  LIGTAVFDATGEKSSMPSWDELVRQHGDRVYRLAYRLSGDAQDAEDLTQDTFIRVFRSLS 145

Query: 123 NYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGPD 182
           +YQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDYDRVP+  P+PEQIYHD+RL   
Sbjct: 146 DYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRVPSPGPDPEQIYHDARLDAG 205

Query: 183 LQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAA 239
           LQAALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQA+RD+LAA
Sbjct: 206 LQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAIRDHLAA 262


>tr|C3JTT3|C3JTT3_RHOER Tax_Id=596309 SubName: Full=Sigma factor,
           sigma 70 type, group 4;[Rhodococcus erythropolis SK121]
          Length = 273

 Score =  317 bits (811), Expect = 1e-84
 Identities = 154/177 (87%), Positives = 168/177 (94%)

Query: 63  LLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSVQ 122
           L+GTAVFDATG+K++MPSWDELVRQH DRVYRLAYRLSG+ QDAEDLTQ+TFIRVFRS+ 
Sbjct: 86  LIGTAVFDATGEKSSMPSWDELVRQHGDRVYRLAYRLSGDAQDAEDLTQDTFIRVFRSLS 145

Query: 123 NYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGPD 182
           +YQPGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDYDRVP+  P+PEQIYHD+RL   
Sbjct: 146 DYQPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYDRVPSPGPDPEQIYHDARLDAG 205

Query: 183 LQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAA 239
           LQAALDSL PEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQA+RD+LAA
Sbjct: 206 LQAALDSLAPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAIRDHLAA 262


>tr|Q49971|Q49971_MYCLE Tax_Id=1769 SubName:
           Full=RpoE;[Mycobacterium leprae]
          Length = 172

 Score =  299 bits (766), Expect = 2e-79
 Identities = 148/158 (93%), Positives = 153/158 (96%), Gaps = 1/158 (0%)

Query: 85  VRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDM 144
           +RQHA RVY LAYRLSGNQ DAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDM
Sbjct: 1   MRQHAARVYWLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDM 60

Query: 145 VRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIE 204
           VRRR+RIRM+ALP+DYDRVPAD+PNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIE
Sbjct: 61  VRRRARIRMDALPDDYDRVPADEPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIE 120

Query: 205 GLSYEEIGATLGVKLGTVRSRIHRGRQALRDY-LAAHP 241
           GLSYEEIGATLGVKLGTVRSRIHRGRQALRDY L AHP
Sbjct: 121 GLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLLTAHP 158


>tr|D0L8U6|D0L8U6_GORB4 Tax_Id=526226 SubName: Full=RNA polymerase
           sigma factor, sigma-70 family;[Gordonia bronchialis]
          Length = 201

 Score =  299 bits (765), Expect = 2e-79
 Identities = 147/183 (80%), Positives = 160/183 (87%)

Query: 65  GTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSVQNY 124
           GTA FDATG+   MPSWDELVR+HADRVYRLAYRLSGNQ DAEDLTQETFIRVFRS+ NY
Sbjct: 14  GTAGFDATGNDLLMPSWDELVREHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSLSNY 73

Query: 125 QPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGPDLQ 184
           +PGTFEGWLHRITTNLFLDMVRRR++IRMEALPE+YDRVPAD P+P+Q++  + L PDLQ
Sbjct: 74  RPGTFEGWLHRITTNLFLDMVRRRNKIRMEALPEEYDRVPADTPDPQQVFDATNLDPDLQ 133

Query: 185 AALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHPEHS 244
            ALDSL PEFRAAVVLCDIEGLSYEEI  TLGVKLGTVRSRIHRGRQ +RD LAA    S
Sbjct: 134 RALDSLAPEFRAAVVLCDIEGLSYEEIATTLGVKLGTVRSRIHRGRQTIRDALAAQGHTS 193

Query: 245 ELS 247
             S
Sbjct: 194 SRS 196


>tr|C2ARI5|C2ARI5_TSUPA Tax_Id=521096 SubName: Full=RNA polymerase,
           sigma 29 subunit, SigE;[Tsukamurella paurometabola DSM
           20162]
          Length = 215

 Score =  295 bits (754), Expect = 4e-78
 Identities = 145/185 (78%), Positives = 164/185 (88%), Gaps = 3/185 (1%)

Query: 53  DDEWAETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQE 112
           DDE A  +    GTA FDATGD++ MPSWDELVR+HADRVYRLAYRLSGN QDAEDLTQ+
Sbjct: 21  DDERATET---AGTAAFDATGDRSDMPSWDELVREHADRVYRLAYRLSGNAQDAEDLTQD 77

Query: 113 TFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQ 172
           TFIRVFRS+Q+Y+PGTFEGWLHRITTNLFLDMVRRR+RIRMEALPEDY+RVP+ DP+P Q
Sbjct: 78  TFIRVFRSLQSYEPGTFEGWLHRITTNLFLDMVRRRNRIRMEALPEDYERVPSGDPDPGQ 137

Query: 173 IYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQA 232
           IY D+ L P LQ ALD+L PEFRAAVVL DIEGLSYEE+ ATLGVKLGTVRSRIHRGR++
Sbjct: 138 IYADANLNPQLQVALDALSPEFRAAVVLADIEGLSYEEVAATLGVKLGTVRSRIHRGRKS 197

Query: 233 LRDYL 237
           +R+ L
Sbjct: 198 IREAL 202


>tr|A4F8J4|A4F8J4_SACEN Tax_Id=405948 SubName: Full=Putative ECF
           family RNA polymerase sigma factor;[Saccharopolyspora
           erythraea]
          Length = 201

 Score =  278 bits (711), Expect = 4e-73
 Identities = 131/166 (78%), Positives = 149/166 (89%)

Query: 79  PSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITT 138
           PSWDE+VRQHADR+YRLAYRL+GNQ DAEDLTQETFIRVFRS+ +Y+PGTFEGWLHRITT
Sbjct: 31  PSWDEVVRQHADRIYRLAYRLTGNQHDAEDLTQETFIRVFRSLASYKPGTFEGWLHRITT 90

Query: 139 NLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAV 198
           NLFLDM RRR+R+RME LPED DR+P   P+PEQ+++D+ L PDLQAALD +PPEFRAAV
Sbjct: 91  NLFLDMARRRARLRMEGLPEDTDRLPGGGPSPEQVFNDTHLDPDLQAALDEMPPEFRAAV 150

Query: 199 VLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHPEHS 244
           VLCD+EGLSYEEIGATLGVKLGTVRSRIHRGRQ L+  L A  EH+
Sbjct: 151 VLCDVEGLSYEEIGATLGVKLGTVRSRIHRGRQMLKATLEARREHA 196


>tr|C6WL01|C6WL01_ACTMD Tax_Id=446462 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Actinosynnema mirum]
          Length = 194

 Score =  276 bits (707), Expect = 1e-72
 Identities = 131/156 (83%), Positives = 145/156 (92%)

Query: 79  PSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITT 138
           P+WDE+VR+HADRVYRLAYRL+GNQ DAEDLTQETFIRVFRS+ +Y+PGTFEGWLHRITT
Sbjct: 25  PTWDEVVREHADRVYRLAYRLTGNQHDAEDLTQETFIRVFRSLASYKPGTFEGWLHRITT 84

Query: 139 NLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAV 198
           NLFLDM RRRSR+RME LPED DR+  DDP+PEQ+Y ++ L PDLQAALD LPPEFRAAV
Sbjct: 85  NLFLDMARRRSRLRMEGLPEDTDRLAGDDPSPEQVYTETHLDPDLQAALDELPPEFRAAV 144

Query: 199 VLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR 234
           VLCD+EGLSYEEIGATLGVKLGTVRSRIHRGRQALR
Sbjct: 145 VLCDVEGLSYEEIGATLGVKLGTVRSRIHRGRQALR 180


>tr|C7MVJ5|C7MVJ5_SACVD Tax_Id=471857 SubName: Full=RNA polymerase
           sigma factor, sigma-70 family;[Saccharomonospora
           viridis]
          Length = 197

 Score =  273 bits (698), Expect = 1e-71
 Identities = 130/159 (81%), Positives = 144/159 (90%)

Query: 79  PSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITT 138
           P+WDE+VRQHADRVYRLAYRL+GN  DAEDLTQETFIRVFRS+ +Y+PGTFEGWLHRITT
Sbjct: 27  PTWDEVVRQHADRVYRLAYRLTGNAHDAEDLTQETFIRVFRSLASYKPGTFEGWLHRITT 86

Query: 139 NLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAV 198
           NLFLDM RRRSR+RME LPED DR+  D P+PEQ+Y D+ L PDLQAALD LPPEF+AAV
Sbjct: 87  NLFLDMARRRSRVRMEGLPEDTDRLVGDGPSPEQVYSDTHLDPDLQAALDELPPEFKAAV 146

Query: 199 VLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 237
           VLCD+EGLSYEEIGATLGVKLGTVRSRIHRGRQAL+  L
Sbjct: 147 VLCDVEGLSYEEIGATLGVKLGTVRSRIHRGRQALKSSL 185


>tr|Q8NRD2|Q8NRD2_CORGL Tax_Id=1718 SubName: Full=DNA-directed RNA
           polymerase specialized sigma subunits, sigma24
           homologs;[Corynebacterium glutamicum]
          Length = 213

 Score =  265 bits (676), Expect = 5e-69
 Identities = 135/197 (68%), Positives = 155/197 (78%), Gaps = 2/197 (1%)

Query: 57  AETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIR 116
           AE ++ L GTA FDA   +A MP+W ELV +HAD VYRLAYRLSGNQ DAEDLTQETF+R
Sbjct: 18  AEHAEELTGTAAFDA--GQADMPTWGELVAEHADSVYRLAYRLSGNQHDAEDLTQETFMR 75

Query: 117 VFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHD 176
           VFRS+++YQPGTFEGWLHRITTNLFLDMVR R +IRMEALPEDY+RVP +D  PEQ Y +
Sbjct: 76  VFRSLKSYQPGTFEGWLHRITTNLFLDMVRHRGKIRMEALPEDYERVPGNDITPEQAYTE 135

Query: 177 SRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY 236
           + L P LQAALD L P+FR AV+LCD+ G+SY+EI  TLGVK+GTVRSRIHRGR  LR  
Sbjct: 136 ANLDPALQAALDELSPDFRVAVILCDVVGMSYDEIAETLGVKMGTVRSRIHRGRSQLRAS 195

Query: 237 LAAHPEHSELSPRLVGT 253
           L A    SE    LV T
Sbjct: 196 LEAAAMTSEEVSLLVPT 212


>tr|A4QD85|A4QD85_CORGB Tax_Id=340322 SubName: Full=Putative
           uncharacterized protein;[Corynebacterium glutamicum]
          Length = 213

 Score =  265 bits (676), Expect = 5e-69
 Identities = 135/197 (68%), Positives = 155/197 (78%), Gaps = 2/197 (1%)

Query: 57  AETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIR 116
           AE ++ L GTA FDA   +A MP+W ELV +HAD VYRLAYRLSGNQ DAEDLTQETF+R
Sbjct: 18  AEHAEELTGTAAFDA--GQADMPTWGELVAEHADSVYRLAYRLSGNQHDAEDLTQETFMR 75

Query: 117 VFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHD 176
           VFRS+++YQPGTFEGWLHRITTNLFLDMVR R +IRMEALPEDY+RVP +D  PEQ Y +
Sbjct: 76  VFRSLKSYQPGTFEGWLHRITTNLFLDMVRHRGKIRMEALPEDYERVPGNDITPEQAYTE 135

Query: 177 SRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY 236
           + L P LQAALD L P+FR AV+LCD+ G+SY+EI  TLGVK+GTVRSRIHRGR  LR  
Sbjct: 136 ANLDPALQAALDELSPDFRVAVILCDVVGMSYDEIAETLGVKMGTVRSRIHRGRSQLRAS 195

Query: 237 LAAHPEHSELSPRLVGT 253
           L A    SE    LV T
Sbjct: 196 LEAAAMTSEEVSLLVPT 212


>tr|Q6M649|Q6M649_CORGL Tax_Id=1718 (sigE)SubName: Full=PUTATIVE RNA
           POLYMERASE SIGMA FACTOR, ECF family;[Corynebacterium
           glutamicum]
          Length = 216

 Score =  265 bits (676), Expect = 5e-69
 Identities = 135/197 (68%), Positives = 155/197 (78%), Gaps = 2/197 (1%)

Query: 57  AETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIR 116
           AE ++ L GTA FDA   +A MP+W ELV +HAD VYRLAYRLSGNQ DAEDLTQETF+R
Sbjct: 21  AEHAEELTGTAAFDA--GQADMPTWGELVAEHADSVYRLAYRLSGNQHDAEDLTQETFMR 78

Query: 117 VFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHD 176
           VFRS+++YQPGTFEGWLHRITTNLFLDMVR R +IRMEALPEDY+RVP +D  PEQ Y +
Sbjct: 79  VFRSLKSYQPGTFEGWLHRITTNLFLDMVRHRGKIRMEALPEDYERVPGNDITPEQAYTE 138

Query: 177 SRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDY 236
           + L P LQAALD L P+FR AV+LCD+ G+SY+EI  TLGVK+GTVRSRIHRGR  LR  
Sbjct: 139 ANLDPALQAALDELSPDFRVAVILCDVVGMSYDEIAETLGVKMGTVRSRIHRGRSQLRAS 198

Query: 237 LAAHPEHSELSPRLVGT 253
           L A    SE    LV T
Sbjct: 199 LEAAAMTSEEVSLLVPT 215


>tr|C0E7D8|C0E7D8_9CORY Tax_Id=566549 SubName: Full=Putative
           uncharacterized protein;[Corynebacterium matruchotii
           ATCC 33806]
          Length = 217

 Score =  263 bits (671), Expect = 2e-68
 Identities = 134/197 (68%), Positives = 153/197 (77%), Gaps = 5/197 (2%)

Query: 47  HPQLVRDDEWAETSDGLLGTAVFDA-TGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQD 105
           H     +D+  E  D L GTA FDA  GD   MPSW ++V QHAD VYRLAYRLSGNQ D
Sbjct: 12  HEAFDHEDDTLEGQD-LQGTAAFDAGVGD---MPSWGDIVAQHADSVYRLAYRLSGNQHD 67

Query: 106 AEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPA 165
           AEDLTQETF+RVFRS++NYQPGTFEGWLHRITTNLFLDMVR RS+I ME+LPEDY+RVP 
Sbjct: 68  AEDLTQETFMRVFRSIKNYQPGTFEGWLHRITTNLFLDMVRHRSKISMESLPEDYERVPG 127

Query: 166 DDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSR 225
            D  PEQ+Y ++ L P LQ ALDSL P+F+ AVVLCD+ G+SY+EI  TLGVK+GTVRSR
Sbjct: 128 TDMTPEQVYTEANLDPALQEALDSLAPDFKVAVVLCDVVGMSYDEIADTLGVKMGTVRSR 187

Query: 226 IHRGRQALRDYLAAHPE 242
           IHRGR  LR  L A  E
Sbjct: 188 IHRGRSQLRAALEAKAE 204


>tr|Q8FQE2|Q8FQE2_COREF Tax_Id=152794 SubName: Full=Putative RNA
           polymerase sigma factor;[Corynebacterium efficiens]
          Length = 216

 Score =  262 bits (670), Expect = 2e-68
 Identities = 134/196 (68%), Positives = 153/196 (78%), Gaps = 2/196 (1%)

Query: 58  ETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRV 117
           E ++ L GTA FDA   +A MPSW ELV +HAD VYRLA+RLSGNQ DAEDLTQETF+RV
Sbjct: 22  EPTEELSGTAAFDA--GQAEMPSWGELVAEHADSVYRLAFRLSGNQHDAEDLTQETFMRV 79

Query: 118 FRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDS 177
           FRS++NYQPGTFEGWLHRITTNLFLDMVR R +IRMEALPEDY+RVP +D  PEQ Y  +
Sbjct: 80  FRSLKNYQPGTFEGWLHRITTNLFLDMVRHRGKIRMEALPEDYERVPGNDMTPEQAYTVA 139

Query: 178 RLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 237
            L P LQ ALD L P+FR AV+LCD+ GLSY+EI  TLGVK+GTVRSRIHRGR  LR  L
Sbjct: 140 NLDPALQEALDDLSPDFRVAVILCDVVGLSYDEIAETLGVKMGTVRSRIHRGRTQLRASL 199

Query: 238 AAHPEHSELSPRLVGT 253
            A  + +E    LV T
Sbjct: 200 EAAAQDNEEVSILVPT 215


>tr|Q6NHY6|Q6NHY6_CORDI Tax_Id=1717 SubName: Full=Putative ECF
           family RNA polymerase sigma factor;[Corynebacterium
           diphtheriae]
          Length = 239

 Score =  262 bits (670), Expect = 2e-68
 Identities = 134/197 (68%), Positives = 153/197 (77%), Gaps = 4/197 (2%)

Query: 60  SDGLLGTAVFDA-TGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVF 118
           ++ L GTA FDA  GD   MPSW+ELV QHAD VYRLA+RLSGNQ DAEDLTQETF+RVF
Sbjct: 46  TEELTGTAAFDAGVGD---MPSWEELVAQHADSVYRLAFRLSGNQHDAEDLTQETFMRVF 102

Query: 119 RSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSR 178
           RS++ YQPGTFEGWLHRITTNLFLDMVR R++IRMEALPEDY+RVP  D  PEQ Y+ S 
Sbjct: 103 RSLKGYQPGTFEGWLHRITTNLFLDMVRHRAKIRMEALPEDYERVPGTDMTPEQAYNVSN 162

Query: 179 LGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLA 238
           L P LQ ALD L P+FR AVVLCD+ G+SY+EI  TLGVK+GTVRSRIHRGR  LR +L 
Sbjct: 163 LDPALQKALDDLSPDFRVAVVLCDVVGMSYDEIADTLGVKMGTVRSRIHRGRSQLRAHLE 222

Query: 239 AHPEHSELSPRLVGTAR 255
                 E +  L+ T R
Sbjct: 223 NQATSDEGAQLLLATGR 239


>tr|C8NMR0|C8NMR0_COREF Tax_Id=196164 (sigE)SubName: Full=RNA
           polymerase sigma-70 factor, ECF
           subfamily;[Corynebacterium efficiens YS-314]
          Length = 213

 Score =  262 bits (670), Expect = 2e-68
 Identities = 134/196 (68%), Positives = 153/196 (78%), Gaps = 2/196 (1%)

Query: 58  ETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRV 117
           E ++ L GTA FDA   +A MPSW ELV +HAD VYRLA+RLSGNQ DAEDLTQETF+RV
Sbjct: 19  EPTEELSGTAAFDA--GQAEMPSWGELVAEHADSVYRLAFRLSGNQHDAEDLTQETFMRV 76

Query: 118 FRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDS 177
           FRS++NYQPGTFEGWLHRITTNLFLDMVR R +IRMEALPEDY+RVP +D  PEQ Y  +
Sbjct: 77  FRSLKNYQPGTFEGWLHRITTNLFLDMVRHRGKIRMEALPEDYERVPGNDMTPEQAYTVA 136

Query: 178 RLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYL 237
            L P LQ ALD L P+FR AV+LCD+ GLSY+EI  TLGVK+GTVRSRIHRGR  LR  L
Sbjct: 137 NLDPALQEALDDLSPDFRVAVILCDVVGLSYDEIAETLGVKMGTVRSRIHRGRTQLRASL 196

Query: 238 AAHPEHSELSPRLVGT 253
            A  + +E    LV T
Sbjct: 197 EAAAQDNEEVSILVPT 212


>tr|C5VDT3|C5VDT3_9CORY Tax_Id=553207 SubName: Full=RNA polymerase
           sigma factor SigE;[Corynebacterium matruchotii ATCC
           14266]
          Length = 196

 Score =  260 bits (664), Expect = 1e-67
 Identities = 130/181 (71%), Positives = 147/181 (81%), Gaps = 4/181 (2%)

Query: 63  LLGTAVFDA-TGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSV 121
           L GTA FDA  GD   MPSW ++V QHAD VYRLAYRLSGNQ DAEDLTQETF+RVFRS+
Sbjct: 6   LQGTAAFDAGVGD---MPSWGDIVAQHADSVYRLAYRLSGNQHDAEDLTQETFMRVFRSI 62

Query: 122 QNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGP 181
           +NYQPGTFEGWLHRITTNLFLDMVR RS+I ME+LPEDY+RVP  D  PEQ+Y ++ L P
Sbjct: 63  KNYQPGTFEGWLHRITTNLFLDMVRHRSKISMESLPEDYERVPGTDMTPEQVYTEANLDP 122

Query: 182 DLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHP 241
            LQ ALDSL P+F+ AVVLCD+ G+SY+EI  TLGVK+GTVRSRIHRGR  LR  L A  
Sbjct: 123 ALQEALDSLAPDFKVAVVLCDVMGMSYDEIADTLGVKMGTVRSRIHRGRSQLRAALEAKA 182

Query: 242 E 242
           E
Sbjct: 183 E 183


>tr|C8XJ69|C8XJ69_NAKMY Tax_Id=479431 SubName: Full=RNA polymerase,
           sigma-24 subunit, ECF subfamily;[Nakamurella
           multipartita]
          Length = 213

 Score =  259 bits (663), Expect = 2e-67
 Identities = 125/164 (76%), Positives = 142/164 (86%)

Query: 71  ATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSVQNYQPGTFE 130
           +TG     P+WDE+VR H DRVYRLAYRLSGN  DAED+TQETFIRVFRS+ ++QPG+FE
Sbjct: 24  STGPVWTPPAWDEIVRDHGDRVYRLAYRLSGNAHDAEDITQETFIRVFRSLASFQPGSFE 83

Query: 131 GWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGPDLQAALDSL 190
           GWLHRITTN+FLDMVRRR RIRMEALPE+ DR+   +P+PEQ + D+ L PDLQAALD L
Sbjct: 84  GWLHRITTNVFLDMVRRRQRIRMEALPEETDRIAGREPSPEQAFSDAHLDPDLQAALDDL 143

Query: 191 PPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR 234
            PEFRAAVVLCD+EGL+YEEIGATLGVKLGTVRSRIHRGR ALR
Sbjct: 144 LPEFRAAVVLCDVEGLTYEEIGATLGVKLGTVRSRIHRGRLALR 187


>tr|C8NVH1|C8NVH1_9CORY Tax_Id=585529 (sigE)SubName: Full=RNA
           polymerase sigma-70 factor, ECF
           subfamily;[Corynebacterium genitalium ATCC 33030]
          Length = 211

 Score =  259 bits (662), Expect = 2e-67
 Identities = 132/189 (69%), Positives = 150/189 (79%), Gaps = 2/189 (1%)

Query: 63  LLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSVQ 122
           L GTA FDA    +AMP+W ELV +HAD VYRLA+RLSGNQQDAEDLTQETF+RVFRSV+
Sbjct: 22  LSGTAAFDA--GHSAMPTWAELVEEHADSVYRLAFRLSGNQQDAEDLTQETFMRVFRSVK 79

Query: 123 NYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGPD 182
           +Y+ GTFEGWLHRITTNLFLDMVR RS+IRMEALPEDY+RVP     PEQ Y+ S L P 
Sbjct: 80  SYKAGTFEGWLHRITTNLFLDMVRHRSKIRMEALPEDYERVPGTAMTPEQAYNVSNLDPA 139

Query: 183 LQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHPE 242
           LQ ALD L PEFR +VVLCD+ G+SYEEI  TLGVK+GTVRSRIHRGR  LRD L A   
Sbjct: 140 LQEALDELSPEFRVSVVLCDVVGMSYEEIAKTLGVKMGTVRSRIHRGRSQLRDSLEAKAR 199

Query: 243 HSELSPRLV 251
            +E +  L+
Sbjct: 200 TNEGARELI 208


>tr|C0XQL3|C0XQL3_9CORY Tax_Id=525263 SubName: Full=RNA polymerase
           sigma factor SigE;[Corynebacterium lipophiloflavum DSM
           44291]
          Length = 200

 Score =  259 bits (662), Expect = 2e-67
 Identities = 131/198 (66%), Positives = 150/198 (75%), Gaps = 2/198 (1%)

Query: 54  DEWAETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQET 113
           D   +  D L GTA FDA   +  MPSW ELV +HA+ VYRLA+RLSGNQ DAEDLTQET
Sbjct: 2   DPLHDAPDTLTGTAAFDAGAGE--MPSWAELVAEHANSVYRLAFRLSGNQHDAEDLTQET 59

Query: 114 FIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQI 173
           F+RVFRS+++YQPGTFEGWLHRITTNLFLDMVR R++IRMEALPEDY+RVP  D  PEQ 
Sbjct: 60  FMRVFRSLKSYQPGTFEGWLHRITTNLFLDMVRHRAKIRMEALPEDYERVPGTDMTPEQA 119

Query: 174 YHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAL 233
           Y  S L P LQ ALD L P+FR AVVLCD+ G++YEEI ATLGVK+GTVRSRIHRGR  L
Sbjct: 120 YSVSNLDPALQTALDELSPDFRVAVVLCDVVGMTYEEIAATLGVKMGTVRSRIHRGRSQL 179

Query: 234 RDYLAAHPEHSELSPRLV 251
           R  L       E +  L+
Sbjct: 180 RRSLETQAASDESAKELI 197


>tr|C0WFJ4|C0WFJ4_9CORY Tax_Id=525260 SubName: Full=ECF family
           DNA-directed RNA polymerase sigma subunit
           SigW;[Corynebacterium accolens ATCC 49725]
          Length = 209

 Score =  258 bits (660), Expect = 3e-67
 Identities = 133/186 (71%), Positives = 149/186 (80%), Gaps = 5/186 (2%)

Query: 52  RDDEWAETSDG---LLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAED 108
           RD E   ++D    L GTA FDA   +A MPSW ELV +HAD VYRLAYRLSG+QQDAED
Sbjct: 6   RDAESVASTDPNVELTGTAAFDA--GEATMPSWAELVAEHADGVYRLAYRLSGDQQDAED 63

Query: 109 LTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDP 168
           LTQETF+RVFRS+  YQPGTF GWLHRITTNLFLDMVR RS+IRME+LPEDY+RVP  D 
Sbjct: 64  LTQETFMRVFRSLDKYQPGTFGGWLHRITTNLFLDMVRHRSKIRMESLPEDYERVPGTDM 123

Query: 169 NPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHR 228
            PEQ Y  + L P LQ+ALDSL P+FR AVVLCDIEG+SY+EI  TLGVK+GTVRSRIHR
Sbjct: 124 TPEQAYTVANLDPVLQSALDSLAPDFRVAVVLCDIEGMSYDEIAETLGVKMGTVRSRIHR 183

Query: 229 GRQALR 234
           GR  LR
Sbjct: 184 GRSQLR 189


>tr|C2CKX7|C2CKX7_CORST Tax_Id=525268 SubName: Full=RNA polymerase
           sigma factor SigE;[Corynebacterium striatum ATCC 6940]
          Length = 221

 Score =  258 bits (658), Expect = 6e-67
 Identities = 129/179 (72%), Positives = 144/179 (80%), Gaps = 2/179 (1%)

Query: 56  WAETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFI 115
           +A+  + L GTA FDA    AAMPSW ELV +HAD VYRLAYRLSGNQQDAEDLTQETF+
Sbjct: 25  FADAQEELTGTAAFDA--GTAAMPSWAELVAEHADSVYRLAYRLSGNQQDAEDLTQETFM 82

Query: 116 RVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYH 175
           RVFRS+  YQ GTF+GWLHRITTNLFLDMVR R++IRMEALPEDY+RVP  D  PEQ Y 
Sbjct: 83  RVFRSLDKYQAGTFDGWLHRITTNLFLDMVRHRAKIRMEALPEDYERVPGTDMTPEQAYS 142

Query: 176 DSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALR 234
            + L P LQ ALD L P+FR AVVLCD+ G+SY+EI  TLGVKLGTVRSRIHRGR  LR
Sbjct: 143 VANLDPVLQKALDELAPDFRVAVVLCDVVGMSYDEIAETLGVKLGTVRSRIHRGRSQLR 201


>tr|C0U796|C0U796_9ACTO Tax_Id=526225 SubName: Full=RNA polymerase,
           sigma subunit, ECF family;[Geodermatophilus obscurus DSM
           43160]
          Length = 196

 Score =  254 bits (648), Expect = 8e-66
 Identities = 124/177 (70%), Positives = 145/177 (81%), Gaps = 6/177 (3%)

Query: 79  PSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITT 138
           P+W+++VR H+ RVYRLAYRLSGN QDAEDLTQETF+RVFRS+ ++ PGTFEGWLHRITT
Sbjct: 17  PTWEQVVRDHSARVYRLAYRLSGNPQDAEDLTQETFVRVFRSLADFSPGTFEGWLHRITT 76

Query: 139 NLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQIYHDSRLGPDLQAALDSLPPEFRAAV 198
           NLFLDMVRRR RIR +ALPED +R+P   P+PEQ+Y D+ L P +QAALD+L PEFR AV
Sbjct: 77  NLFLDMVRRRQRIRFDALPEDTERLPGTAPSPEQVYSDTHLDPQVQAALDALSPEFRVAV 136

Query: 199 VLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQALRDYLAAHPEHSELSPRLVGTAR 255
           VLCDIEGL+YEEI ATLG+KLGTVRSRIHRGR  LR+ LA       L+PR   T R
Sbjct: 137 VLCDIEGLTYEEIAATLGIKLGTVRSRIHRGRVQLREALA------HLAPRRPATTR 187


>tr|C3PFJ3|C3PFJ3_CORA7 Tax_Id=548476 (sigE2)SubName:
           Full=ECF-family sigma factor E;[Corynebacterium
           aurimucosum]
          Length = 221

 Score =  253 bits (647), Expect = 1e-65
 Identities = 129/181 (71%), Positives = 144/181 (79%), Gaps = 3/181 (1%)

Query: 54  DEWAETSDGLLGTAVFDATGDKAAMPSWDELVRQHADRVYRLAYRLSGNQQDAEDLTQET 113
           D   ET + L GTA FDA   +A MPSW ELV +HAD VYRLAYRLSGNQ DAEDLTQET
Sbjct: 24  DASGETEE-LTGTAAFDA--GQAEMPSWGELVAEHADEVYRLAYRLSGNQHDAEDLTQET 80

Query: 114 FIRVFRSVQNYQPGTFEGWLHRITTNLFLDMVRRRSRIRMEALPEDYDRVPADDPNPEQI 173
           F+RVFRS+  YQ GTF GWLHRITTNLFLDMVR RS+IRMEALPEDY+RVP  D  PEQ 
Sbjct: 81  FMRVFRSLDKYQAGTFGGWLHRITTNLFLDMVRHRSKIRMEALPEDYERVPGTDMTPEQA 140

Query: 174 YHDSRLGPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIGATLGVKLGTVRSRIHRGRQAL 233
           Y  + L P LQ+ALD+L P+FR AVVLCD+ G+SY+EI  TLGVK+GTVRSRIHRGR  L
Sbjct: 141 YTVANLDPALQSALDNLAPDFRVAVVLCDVVGMSYDEIAETLGVKMGTVRSRIHRGRSQL 200

Query: 234 R 234
           R
Sbjct: 201 R 201


  Database: Amellifera_nr
    Posted date:  Feb 5, 2010  5:10 AM
  Number of letters in database: 3,846,993,858
  Number of sequences in database:  11,275,203
  
Lambda     K      H
   0.318    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11275203
Number of Hits to DB: 1,967,386,175
Number of extensions: 78339642
Number of successful extensions: 197294
Number of sequences better than 10.0: 9951
Number of HSP's gapped: 190934
Number of HSP's successfully gapped: 9956
Length of query: 255
Length of database: 3,846,993,858
Length adjustment: 134
Effective length of query: 121
Effective length of database: 2,336,116,656
Effective search space: 282670115376
Effective search space used: 282670115376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 79 (35.0 bits)