BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_4465 (1222 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HDI8|B2HDI8_MYCMM Tax_Id=216594 (mfd)SubName: Full=Transcri... 2279 0.0 tr|A0PW58|A0PW58_MYCUA Tax_Id=362242 (mfd)SubName: Full=Transcri... 2261 0.0 tr|Q741V0|Q741V0_MYCPA Tax_Id=1770 (mfd)SubName: Full=Mfd;[Mycob... 1992 0.0 sp|P64326|MFD_MYCTU Tax_Id=1773 (mfd)RecName: Full=Transcription... 1987 0.0 sp|P64327|MFD_MYCBO Tax_Id=1765 (mfd)RecName: Full=Transcription... 1987 0.0 tr|C6DVT3|C6DVT3_MYCTK Tax_Id=478434 SubName: Full=Transcription... 1987 0.0 tr|C1AM11|C1AM11_MYCBT Tax_Id=561275 (mfd)SubName: Full=Putative... 1987 0.0 tr|A5U163|A5U163_MYCTA Tax_Id=419947 (mfd)SubName: Full=Transcri... 1987 0.0 tr|A1KHF8|A1KHF8_MYCBP Tax_Id=410289 (mfd)SubName: Full=Probable... 1987 0.0 tr|A5WL42|A5WL42_MYCTF Tax_Id=336982 SubName: Full=Transcription... 1987 0.0 tr|A4KFW0|A4KFW0_MYCTU Tax_Id=395095 SubName: Full=Transcription... 1987 0.0 tr|B8ZU68|B8ZU68_MYCLB Tax_Id=561304 (mfd)SubName: Full=Putative... 1898 0.0 tr|Q9CD43|Q9CD43_MYCLE Tax_Id=1769 (mfd)SubName: Full=Putative t... 1896 0.0 tr|A0R3C5|A0R3C5_MYCS2 Tax_Id=246196 (mfd)SubName: Full=Transcri... 1880 0.0 tr|A1TEF0|A1TEF0_MYCVP Tax_Id=350058 SubName: Full=Transcription... 1877 0.0 tr|A3Q5G2|A3Q5G2_MYCSJ Tax_Id=164757 SubName: Full=Transcription... 1867 0.0 tr|Q1B434|Q1B434_MYCSS Tax_Id=164756 SubName: Full=Transcription... 1864 0.0 tr|A1UL14|A1UL14_MYCSK Tax_Id=189918 SubName: Full=Transcription... 1864 0.0 tr|A4T6M5|A4T6M5_MYCGI Tax_Id=350054 SubName: Full=Transcription... 1837 0.0 tr|B1MKF3|B1MKF3_MYCA9 Tax_Id=561007 SubName: Full=Probable tran... 1694 0.0 tr|Q0S4J8|Q0S4J8_RHOSR Tax_Id=101510 SubName: Full=Transcription... 1597 0.0 tr|C1AY76|C1AY76_RHOOB Tax_Id=632772 (mfd)SubName: Full=Transcri... 1597 0.0 tr|Q5YQ14|Q5YQ14_NOCFA Tax_Id=37329 (mfd)SubName: Full=Putative ... 1587 0.0 tr|C1A324|C1A324_RHOE4 Tax_Id=234621 (mfd)SubName: Full=Transcri... 1571 0.0 tr|C3JX01|C3JX01_RHOER Tax_Id=596309 (mfd)SubName: Full=Transcri... 1570 0.0 tr|D0L750|D0L750_GORB4 Tax_Id=526226 SubName: Full=Transcription... 1440 0.0 tr|C6WJJ6|C6WJJ6_ACTMD Tax_Id=446462 SubName: Full=Transcription... 1401 0.0 tr|A4F7Z2|A4F7Z2_SACEN Tax_Id=405948 (mfd)SubName: Full=Transcri... 1390 0.0 tr|C7MZH3|C7MZH3_SACVD Tax_Id=471857 SubName: Full=Transcription... 1356 0.0 tr|Q6M6I8|Q6M6I8_CORGL Tax_Id=1718 (mfd)SubName: Full=PUTATIVE T... 1308 0.0 tr|A4QCT9|A4QCT9_CORGB Tax_Id=340322 SubName: Full=Putative unch... 1308 0.0 tr|Q8FQT5|Q8FQT5_COREF Tax_Id=152794 SubName: Full=Putative tran... 1305 0.0 tr|C8NN51|C8NN51_COREF Tax_Id=196164 (mfd)SubName: Full=Transcri... 1305 0.0 tr|Q8NRS9|Q8NRS9_CORGL Tax_Id=1718 SubName: Full=Transcription-r... 1302 0.0 tr|Q6NI67|Q6NI67_CORDI Tax_Id=1717 (mfd)SubName: Full=Transcript... 1300 0.0 tr|C5VBF1|C5VBF1_9CORY Tax_Id=553207 (mfd)SubName: Full=Transcri... 1293 0.0 tr|C2CLV5|C2CLV5_CORST Tax_Id=525268 (mfd)SubName: Full=Transcri... 1283 0.0 tr|C4LHL4|C4LHL4_CORK4 Tax_Id=645127 SubName: Full=Transcription... 1283 0.0 tr|C0E7P9|C0E7P9_9CORY Tax_Id=566549 SubName: Full=Putative unch... 1283 0.0 tr|C2BQC5|C2BQC5_9CORY Tax_Id=525264 SubName: Full=Possible tran... 1278 0.0 tr|Q4JU44|Q4JU44_CORJK Tax_Id=306537 (mfd)SubName: Full=Transcri... 1278 0.0 tr|C6RB20|C6RB20_9CORY Tax_Id=553206 (mfd)SubName: Full=Transcri... 1277 0.0 tr|C0WFA9|C0WFA9_9CORY Tax_Id=525260 SubName: Full=Possible tran... 1274 0.0 tr|C8RQD1|C8RQD1_CORJE Tax_Id=525262 (mfd)SubName: Full=Transcri... 1272 0.0 tr|C3PFA1|C3PFA1_CORA7 Tax_Id=548476 (mfd)SubName: Full=Transcri... 1264 0.0 tr|B1VFK5|B1VFK5_CORU7 Tax_Id=504474 SubName: Full=Transcription... 1262 0.0 tr|C0XQ03|C0XQ03_9CORY Tax_Id=525263 SubName: Full=Possible tran... 1261 0.0 tr|C8NVV2|C8NVV2_9CORY Tax_Id=585529 (mfd)SubName: Full=Transcri... 1249 0.0 tr|C2GIP0|C2GIP0_9CORY Tax_Id=548478 (mfd)SubName: Full=Transcri... 1249 0.0 tr|C0VT33|C0VT33_9CORY Tax_Id=548477 (mfd)SubName: Full=Transcri... 1246 0.0 >tr|B2HDI8|B2HDI8_MYCMM Tax_Id=216594 (mfd)SubName: Full=Transcription-repair coupling factor Mfd (TrcF);[Mycobacterium marinum] Length = 1222 Score = 2279 bits (5905), Expect = 0.0 Identities = 1176/1222 (96%), Positives = 1176/1222 (96%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG Sbjct: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGA AH Sbjct: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGARLLLLRRLAH 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD Sbjct: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV Sbjct: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 Query: 241 ACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 ACRELLLTEDV QHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD Sbjct: 241 ACRELLLTEDVRARAAALAAQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGS 360 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGS Sbjct: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGS 360 Query: 361 GFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVS 420 GFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVS Sbjct: 361 GFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVS 420 Query: 421 TGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN 480 TGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN Sbjct: 421 TGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN 480 Query: 481 LVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG 540 LVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG Sbjct: 481 LVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG 540 Query: 541 GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKAR 600 GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKAR Sbjct: 541 GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKAR 600 Query: 601 KAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEK 660 KAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEK Sbjct: 601 KAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEK 660 Query: 661 SIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPV 720 SIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPV Sbjct: 661 SIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPV 720 Query: 721 TVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEH 780 TVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEH Sbjct: 721 TVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEH 780 Query: 781 KEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 KEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV Sbjct: 781 KEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 Query: 841 AAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGFW 900 AAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGFW Sbjct: 841 AAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGFW 900 Query: 901 QREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 QREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP Sbjct: 901 QREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 Query: 961 QAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRL 1020 QAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRL Sbjct: 961 QAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRL 1020 Query: 1021 VGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXXXXTSD 1080 VGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSD TSD Sbjct: 1021 VGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEAYRRLAAATSD 1080 Query: 1081 SGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAPMDLPDS 1140 SGVAAVVDELIDRYGALPEP SGITDVSAPSSATVRLAPMDLPDS Sbjct: 1081 SGVAAVVDELIDRYGALPEPALRLVAVARLRLLCRASGITDVSAPSSATVRLAPMDLPDS 1140 Query: 1141 AQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVTALAGKPQQDI 1200 AQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVTALAGKPQQDI Sbjct: 1141 AQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVTALAGKPQQDI 1200 Query: 1201 GRTSLSEDDAAATASGKERQAR 1222 GRTSLSEDDAAATASGKERQAR Sbjct: 1201 GRTSLSEDDAAATASGKERQAR 1222 >tr|A0PW58|A0PW58_MYCUA Tax_Id=362242 (mfd)SubName: Full=Transcription-repair coupling factor Mfd (TrcF);[Mycobacterium ulcerans] Length = 1222 Score = 2261 bits (5860), Expect = 0.0 Identities = 1167/1222 (95%), Positives = 1170/1222 (95%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG Sbjct: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGA AH Sbjct: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGARLLLLRRLAH 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+DTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD Sbjct: 121 PDDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV Sbjct: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 Query: 241 ACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 ACRELLLTEDV QHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD Sbjct: 241 ACRELLLTEDVRARAAALAAQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGS 360 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGS Sbjct: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGS 360 Query: 361 GFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVS 420 GFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVS Sbjct: 361 GFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVS 420 Query: 421 TGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN 480 TGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN Sbjct: 421 TGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN 480 Query: 481 LVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG 540 LVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG Sbjct: 481 LVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG 540 Query: 541 GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKAR 600 GARREYLVLEYASA+RGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKAR Sbjct: 541 GARREYLVLEYASARRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKAR 600 Query: 601 KAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEK 660 KAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVK DMEK Sbjct: 601 KAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKRDMEK 660 Query: 661 SIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPV 720 SIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPV Sbjct: 661 SIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPV 720 Query: 721 TVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEH 780 TVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEH Sbjct: 721 TVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEH 780 Query: 781 KEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 KEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV Sbjct: 781 KEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 Query: 841 AAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGFW 900 AAALRRELLRDGQAFYVHNR SSIDDTAARIRKLVPEARVV AHGQMPEDLLERTVQGFW Sbjct: 841 AAALRRELLRDGQAFYVHNRASSIDDTAARIRKLVPEARVVAAHGQMPEDLLERTVQGFW 900 Query: 901 QREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 QREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP Sbjct: 901 QREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 Query: 961 QAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRL 1020 QAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLY+RL Sbjct: 961 QAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYLRL 1020 Query: 1021 VGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXXXXTSD 1080 VGEAVEAYRAAADGK VTTPEEPKDVRIDLPVDAHLPPDYIGSD TSD Sbjct: 1021 VGEAVEAYRAAADGKMVTTPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEAYRRLATATSD 1080 Query: 1081 SGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAPMDLPDS 1140 SGVAAVVDELIDRYGALPEP SGITDVSAPSSATVRLAPMDLPDS Sbjct: 1081 SGVAAVVDELIDRYGALPEPALRLVAVARLRLLCRASGITDVSAPSSATVRLAPMDLPDS 1140 Query: 1141 AQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVTALAGKPQQDI 1200 AQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVTALAGK QQDI Sbjct: 1141 AQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVTALAGKLQQDI 1200 Query: 1201 GRTSLSEDDAAATASGKERQAR 1222 GRTSLSEDDA ATASGKERQAR Sbjct: 1201 GRTSLSEDDAGATASGKERQAR 1222 >tr|Q741V0|Q741V0_MYCPA Tax_Id=1770 (mfd)SubName: Full=Mfd;[Mycobacterium paratuberculosis] Length = 1221 Score = 1992 bits (5160), Expect = 0.0 Identities = 1017/1206 (84%), Positives = 1084/1206 (89%), Gaps = 5/1206 (0%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MTAPGAA P+TPIAGLV+LALTAPTFQQLI A+ P +L+LVGPAS R FVASALA+ G Sbjct: 1 MTAPGAARPETPIAGLVELALTAPTFQQLIDTAAASPADLSLVGPASTRLFVASALARLG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 PLLVVTATGREADD+TAELRGV G+AVA+FPSWETLPHERLSPGVDTVGA AH Sbjct: 61 PLLVVTATGREADDLTAELRGVVGDAVAVFPSWETLPHERLSPGVDTVGARLTVLRRLAH 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+D RLGPPL+VVVTAVRSLLQPMTPQLG EPV+LSVGQEI F+ VIARLVELAY+RVD Sbjct: 121 PDDARLGPPLQVVVTAVRSLLQPMTPQLGLVEPVTLSVGQEIEFEHVIARLVELAYSRVD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MVGRRGEFAVRGGILD+F PTAEHPVRVEFWGDE++EMRMFSVADQRSIPEI V T+++V Sbjct: 181 MVGRRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEIAVDTVISV 240 Query: 241 ACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 CRELLLTEDV QHPASE +TGSV DMLAK+A+GI DGMEALLPVLRP Sbjct: 241 PCRELLLTEDVRARAAELAAQHPASEPAITGSVSDMLAKIADGIAVDGMEALLPVLRPGK 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGT---DAPVDVEAL 357 LLTDQLA+ TPVL+CDPEK+RTRAADLIKTGREFLEASWSVAA+GT AP+DVE L Sbjct: 301 QVLLTDQLADRTPVLLCDPEKIRTRAADLIKTGREFLEASWSVAALGTLENQAPIDVEQL 360 Query: 358 GGSGFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRA 417 GGSGFAEL++V+ AA GHPWWTLSQLS+ESA EL+VRAAPSARGHQ DID IFAMLRA Sbjct: 361 GGSGFAELDEVRAAAVRGGHPWWTLSQLSDESAVELDVRAAPSARGHQHDIDGIFAMLRA 420 Query: 418 HVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVP 477 HVSTGG+A +V PGTGTAHR+VERLAE D PAAMLE GAAP+ GVVGVLKGPL DG+++P Sbjct: 421 HVSTGGHAAVVAPGTGTAHRVVERLAECDTPAAMLESGAAPRAGVVGVLKGPLHDGIVIP 480 Query: 478 GANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVER 537 GANLVV+TET+LTG+R AVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEM ER Sbjct: 481 GANLVVITETDLTGSRVAAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMTER 540 Query: 538 TVGGARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKT 597 TVGGARREYLVLEYAS+KRGGGSDKLYVPMDSLDQLSRYVGGQAPALS+LGGSDW NTKT Sbjct: 541 TVGGARREYLVLEYASSKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSKLGGSDWANTKT 600 Query: 598 KARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGD 657 KAR+AVREIAGELV+LYAKRQASPGHAF+PDTPWQAEMEDAFG+TETVDQLTAITEVK D Sbjct: 601 KARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAEMEDAFGYTETVDQLTAITEVKSD 660 Query: 658 MEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAG 717 MEK IPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAG Sbjct: 661 MEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAG 720 Query: 718 FPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFG 777 FPVTVKGLSRFTD AESR VIEG+ADGSVD+VIGTHRLLQTGVRWKDLGLVVVDEEQRFG Sbjct: 721 FPVTVKGLSRFTDAAESRAVIEGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFG 780 Query: 778 VEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDD 837 VEHKEHIKSLR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDD Sbjct: 781 VEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDD 840 Query: 838 KQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEAR--VVVAHGQMPEDLLERT 895 KQVAAALRRELLRDGQAFYVHNRVSSID AAR+R+LVPEAR VVVAHGQMPE+ LERT Sbjct: 841 KQVAAALRRELLRDGQAFYVHNRVSSIDRAAARVRELVPEARVVVVVAHGQMPEERLERT 900 Query: 896 VQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAY 955 VQGFW RE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAY Sbjct: 901 VQGFWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAY 960 Query: 956 FLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFD 1015 FLYPP APLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFD Sbjct: 961 FLYPPHAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFD 1020 Query: 1016 LYVRLVGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXX 1075 LYVRLVGEAVEAYRAAADG+TVTT EEPKDVRIDLPVDAHLPPDYI SD Sbjct: 1021 LYVRLVGEAVEAYRAAADGQTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEAYRRLA 1080 Query: 1076 XXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAPM 1135 SD + AVV+EL+DRYGALPEP +GIT+VSAPS+ATVRL+P+ Sbjct: 1081 AAGSDDEIDAVVEELVDRYGALPEPALRLVAVARLRLLCRAAGITEVSAPSAATVRLSPI 1140 Query: 1136 DLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVTALAGK 1195 LPDSAQVRLKRMYP YRATTSTVQVPIPR GGVGAPR+RDVELVQMVANLVTAL GK Sbjct: 1141 TLPDSAQVRLKRMYPAASYRATTSTVQVPIPRAGGVGAPRLRDVELVQMVANLVTALQGK 1200 Query: 1196 PQQDIG 1201 PQ D+G Sbjct: 1201 PQTDVG 1206 >sp|P64326|MFD_MYCTU Tax_Id=1773 (mfd)RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.1.-; AltName: Full=ATP-dependent helicase mfd;[Mycobacterium tuberculosis] Length = 1234 Score = 1987 bits (5148), Expect = 0.0 Identities = 1020/1233 (82%), Positives = 1095/1233 (88%), Gaps = 13/1233 (1%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MTAPG A DTPIAGLV+LAL+APTFQQL+ RA RPDELTL+ PASAR VASALA+QG Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 PLLVVTATGREADD+ AELRGVFG+AVAL PSWETLPHERLSPGVDTVG AH Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+D +LGPPL VVVT+VRSLLQPMTPQLG EP++L+VG E FD V+ARLVELAYTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MVGRRGEFAVRGGILD+FAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEI++ TLVA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 ACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 ACRELLL+EDV +HPA+E+TVTGS DMLAKLAEGI DGMEA+LPVL D Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGT---DAPVDVEAL 357 HALLTDQL +GTPVLVCDPEKVRTRAADLI+TGREFLEASWSVAA+GT APVDVE L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GGSGFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRA 417 GGSGF EL+QV+ AA+ +GHPWWTLSQLS+ESA EL+VRAAPSARGHQ+DID+IFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVP 477 H++TGGYA +V PGTGTAHR+VERL+ESD PA ML+PG APK GVVGVL+GPLRDGVI+P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVER 537 GANLVV+TET+LTG+R +A EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEMVER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 TVGGARREYLVLEYASAKRGGGS---DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTN 594 TVGGARREYLVLEYASAKRGGG+ DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDW N Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEV 654 TKTKAR+AVREIAGELV+LYAKRQASPGHAF+PDTPWQAE+EDAFGFTETVDQLTAI EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDR 714 K DMEK IPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF +R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQ 774 M+GFPVT+KGLSRFTD AESR VI+G+ADGSVD+VIGTHRLLQTGVRWKDLGLVVVDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKSLR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLER 894 HDDKQ+AAALRRELLRDGQAFYVHNRVSSID AAR+R+LVPEARVVVAHGQMPEDLLE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TVQ FW RE DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGF 1014 YFLYPPQ PLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLG+EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T EEPKDVRIDLPVDAHLPPDYI SD Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 +SD VAAVVDEL DRYGALPEP SGITDV+A S+ATV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVT 1190 RL+P+ LPDSAQVRLKRMYPG HYRATT+TVQVPIPR GG+GAPRIRDVELVQMVA+L+T Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200 Query: 1191 ALAGKPQQDIGRTSLS---EDDAAATASGKERQ 1220 ALAGKP+Q IG T+ S ED + KERQ Sbjct: 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQ 1233 >sp|P64327|MFD_MYCBO Tax_Id=1765 (mfd)RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.1.-; AltName: Full=ATP-dependent helicase mfd;[Mycobacterium bovis] Length = 1234 Score = 1987 bits (5148), Expect = 0.0 Identities = 1020/1233 (82%), Positives = 1095/1233 (88%), Gaps = 13/1233 (1%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MTAPG A DTPIAGLV+LAL+APTFQQL+ RA RPDELTL+ PASAR VASALA+QG Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 PLLVVTATGREADD+ AELRGVFG+AVAL PSWETLPHERLSPGVDTVG AH Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+D +LGPPL VVVT+VRSLLQPMTPQLG EP++L+VG E FD V+ARLVELAYTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MVGRRGEFAVRGGILD+FAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEI++ TLVA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 ACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 ACRELLL+EDV +HPA+E+TVTGS DMLAKLAEGI DGMEA+LPVL D Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGT---DAPVDVEAL 357 HALLTDQL +GTPVLVCDPEKVRTRAADLI+TGREFLEASWSVAA+GT APVDVE L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GGSGFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRA 417 GGSGF EL+QV+ AA+ +GHPWWTLSQLS+ESA EL+VRAAPSARGHQ+DID+IFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVP 477 H++TGGYA +V PGTGTAHR+VERL+ESD PA ML+PG APK GVVGVL+GPLRDGVI+P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVER 537 GANLVV+TET+LTG+R +A EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEMVER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 TVGGARREYLVLEYASAKRGGGS---DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTN 594 TVGGARREYLVLEYASAKRGGG+ DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDW N Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEV 654 TKTKAR+AVREIAGELV+LYAKRQASPGHAF+PDTPWQAE+EDAFGFTETVDQLTAI EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDR 714 K DMEK IPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF +R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQ 774 M+GFPVT+KGLSRFTD AESR VI+G+ADGSVD+VIGTHRLLQTGVRWKDLGLVVVDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKSLR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLER 894 HDDKQ+AAALRRELLRDGQAFYVHNRVSSID AAR+R+LVPEARVVVAHGQMPEDLLE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TVQ FW RE DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGF 1014 YFLYPPQ PLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLG+EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T EEPKDVRIDLPVDAHLPPDYI SD Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 +SD VAAVVDEL DRYGALPEP SGITDV+A S+ATV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVT 1190 RL+P+ LPDSAQVRLKRMYPG HYRATT+TVQVPIPR GG+GAPRIRDVELVQMVA+L+T Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200 Query: 1191 ALAGKPQQDIGRTSLS---EDDAAATASGKERQ 1220 ALAGKP+Q IG T+ S ED + KERQ Sbjct: 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQ 1233 >tr|C6DVT3|C6DVT3_MYCTK Tax_Id=478434 SubName: Full=Transcription-repair coupling factor mfd;[Mycobacterium tuberculosis] Length = 1234 Score = 1987 bits (5148), Expect = 0.0 Identities = 1020/1233 (82%), Positives = 1095/1233 (88%), Gaps = 13/1233 (1%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MTAPG A DTPIAGLV+LAL+APTFQQL+ RA RPDELTL+ PASAR VASALA+QG Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 PLLVVTATGREADD+ AELRGVFG+AVAL PSWETLPHERLSPGVDTVG AH Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+D +LGPPL VVVT+VRSLLQPMTPQLG EP++L+VG E FD V+ARLVELAYTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MVGRRGEFAVRGGILD+FAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEI++ TLVA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 ACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 ACRELLL+EDV +HPA+E+TVTGS DMLAKLAEGI DGMEA+LPVL D Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGT---DAPVDVEAL 357 HALLTDQL +GTPVLVCDPEKVRTRAADLI+TGREFLEASWSVAA+GT APVDVE L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GGSGFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRA 417 GGSGF EL+QV+ AA+ +GHPWWTLSQLS+ESA EL+VRAAPSARGHQ+DID+IFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVP 477 H++TGGYA +V PGTGTAHR+VERL+ESD PA ML+PG APK GVVGVL+GPLRDGVI+P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVER 537 GANLVV+TET+LTG+R +A EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEMVER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 TVGGARREYLVLEYASAKRGGGS---DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTN 594 TVGGARREYLVLEYASAKRGGG+ DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDW N Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEV 654 TKTKAR+AVREIAGELV+LYAKRQASPGHAF+PDTPWQAE+EDAFGFTETVDQLTAI EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDR 714 K DMEK IPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF +R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQ 774 M+GFPVT+KGLSRFTD AESR VI+G+ADGSVD+VIGTHRLLQTGVRWKDLGLVVVDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKSLR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLER 894 HDDKQ+AAALRRELLRDGQAFYVHNRVSSID AAR+R+LVPEARVVVAHGQMPEDLLE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TVQ FW RE DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGF 1014 YFLYPPQ PLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLG+EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T EEPKDVRIDLPVDAHLPPDYI SD Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 +SD VAAVVDEL DRYGALPEP SGITDV+A S+ATV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVT 1190 RL+P+ LPDSAQVRLKRMYPG HYRATT+TVQVPIPR GG+GAPRIRDVELVQMVA+L+T Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200 Query: 1191 ALAGKPQQDIGRTSLS---EDDAAATASGKERQ 1220 ALAGKP+Q IG T+ S ED + KERQ Sbjct: 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQ 1233 >tr|C1AM11|C1AM11_MYCBT Tax_Id=561275 (mfd)SubName: Full=Putative transcription-repair coupling factor;[Mycobacterium bovis] Length = 1234 Score = 1987 bits (5148), Expect = 0.0 Identities = 1020/1233 (82%), Positives = 1095/1233 (88%), Gaps = 13/1233 (1%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MTAPG A DTPIAGLV+LAL+APTFQQL+ RA RPDELTL+ PASAR VASALA+QG Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 PLLVVTATGREADD+ AELRGVFG+AVAL PSWETLPHERLSPGVDTVG AH Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+D +LGPPL VVVT+VRSLLQPMTPQLG EP++L+VG E FD V+ARLVELAYTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MVGRRGEFAVRGGILD+FAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEI++ TLVA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 ACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 ACRELLL+EDV +HPA+E+TVTGS DMLAKLAEGI DGMEA+LPVL D Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGT---DAPVDVEAL 357 HALLTDQL +GTPVLVCDPEKVRTRAADLI+TGREFLEASWSVAA+GT APVDVE L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GGSGFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRA 417 GGSGF EL+QV+ AA+ +GHPWWTLSQLS+ESA EL+VRAAPSARGHQ+DID+IFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVP 477 H++TGGYA +V PGTGTAHR+VERL+ESD PA ML+PG APK GVVGVL+GPLRDGVI+P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVER 537 GANLVV+TET+LTG+R +A EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEMVER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 TVGGARREYLVLEYASAKRGGGS---DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTN 594 TVGGARREYLVLEYASAKRGGG+ DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDW N Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEV 654 TKTKAR+AVREIAGELV+LYAKRQASPGHAF+PDTPWQAE+EDAFGFTETVDQLTAI EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDR 714 K DMEK IPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF +R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQ 774 M+GFPVT+KGLSRFTD AESR VI+G+ADGSVD+VIGTHRLLQTGVRWKDLGLVVVDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKSLR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLER 894 HDDKQ+AAALRRELLRDGQAFYVHNRVSSID AAR+R+LVPEARVVVAHGQMPEDLLE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TVQ FW RE DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGF 1014 YFLYPPQ PLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLG+EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T EEPKDVRIDLPVDAHLPPDYI SD Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 +SD VAAVVDEL DRYGALPEP SGITDV+A S+ATV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVT 1190 RL+P+ LPDSAQVRLKRMYPG HYRATT+TVQVPIPR GG+GAPRIRDVELVQMVA+L+T Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200 Query: 1191 ALAGKPQQDIGRTSLS---EDDAAATASGKERQ 1220 ALAGKP+Q IG T+ S ED + KERQ Sbjct: 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQ 1233 >tr|A5U163|A5U163_MYCTA Tax_Id=419947 (mfd)SubName: Full=Transcription-repair coupling factor;[Mycobacterium tuberculosis] Length = 1234 Score = 1987 bits (5148), Expect = 0.0 Identities = 1020/1233 (82%), Positives = 1095/1233 (88%), Gaps = 13/1233 (1%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MTAPG A DTPIAGLV+LAL+APTFQQL+ RA RPDELTL+ PASAR VASALA+QG Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 PLLVVTATGREADD+ AELRGVFG+AVAL PSWETLPHERLSPGVDTVG AH Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+D +LGPPL VVVT+VRSLLQPMTPQLG EP++L+VG E FD V+ARLVELAYTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MVGRRGEFAVRGGILD+FAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEI++ TLVA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 ACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 ACRELLL+EDV +HPA+E+TVTGS DMLAKLAEGI DGMEA+LPVL D Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGT---DAPVDVEAL 357 HALLTDQL +GTPVLVCDPEKVRTRAADLI+TGREFLEASWSVAA+GT APVDVE L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GGSGFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRA 417 GGSGF EL+QV+ AA+ +GHPWWTLSQLS+ESA EL+VRAAPSARGHQ+DID+IFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVP 477 H++TGGYA +V PGTGTAHR+VERL+ESD PA ML+PG APK GVVGVL+GPLRDGVI+P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVER 537 GANLVV+TET+LTG+R +A EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEMVER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 TVGGARREYLVLEYASAKRGGGS---DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTN 594 TVGGARREYLVLEYASAKRGGG+ DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDW N Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEV 654 TKTKAR+AVREIAGELV+LYAKRQASPGHAF+PDTPWQAE+EDAFGFTETVDQLTAI EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDR 714 K DMEK IPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF +R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQ 774 M+GFPVT+KGLSRFTD AESR VI+G+ADGSVD+VIGTHRLLQTGVRWKDLGLVVVDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKSLR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLER 894 HDDKQ+AAALRRELLRDGQAFYVHNRVSSID AAR+R+LVPEARVVVAHGQMPEDLLE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TVQ FW RE DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGF 1014 YFLYPPQ PLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLG+EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T EEPKDVRIDLPVDAHLPPDYI SD Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 +SD VAAVVDEL DRYGALPEP SGITDV+A S+ATV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVT 1190 RL+P+ LPDSAQVRLKRMYPG HYRATT+TVQVPIPR GG+GAPRIRDVELVQMVA+L+T Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200 Query: 1191 ALAGKPQQDIGRTSLS---EDDAAATASGKERQ 1220 ALAGKP+Q IG T+ S ED + KERQ Sbjct: 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQ 1233 >tr|A1KHF8|A1KHF8_MYCBP Tax_Id=410289 (mfd)SubName: Full=Probable transcription-repair coupling factor mfd;[Mycobacterium bovis] Length = 1234 Score = 1987 bits (5148), Expect = 0.0 Identities = 1020/1233 (82%), Positives = 1095/1233 (88%), Gaps = 13/1233 (1%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MTAPG A DTPIAGLV+LAL+APTFQQL+ RA RPDELTL+ PASAR VASALA+QG Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 PLLVVTATGREADD+ AELRGVFG+AVAL PSWETLPHERLSPGVDTVG AH Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+D +LGPPL VVVT+VRSLLQPMTPQLG EP++L+VG E FD V+ARLVELAYTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MVGRRGEFAVRGGILD+FAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEI++ TLVA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 ACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 ACRELLL+EDV +HPA+E+TVTGS DMLAKLAEGI DGMEA+LPVL D Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGT---DAPVDVEAL 357 HALLTDQL +GTPVLVCDPEKVRTRAADLI+TGREFLEASWSVAA+GT APVDVE L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GGSGFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRA 417 GGSGF EL+QV+ AA+ +GHPWWTLSQLS+ESA EL+VRAAPSARGHQ+DID+IFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVP 477 H++TGGYA +V PGTGTAHR+VERL+ESD PA ML+PG APK GVVGVL+GPLRDGVI+P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVER 537 GANLVV+TET+LTG+R +A EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEMVER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 TVGGARREYLVLEYASAKRGGGS---DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTN 594 TVGGARREYLVLEYASAKRGGG+ DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDW N Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEV 654 TKTKAR+AVREIAGELV+LYAKRQASPGHAF+PDTPWQAE+EDAFGFTETVDQLTAI EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDR 714 K DMEK IPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF +R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQ 774 M+GFPVT+KGLSRFTD AESR VI+G+ADGSVD+VIGTHRLLQTGVRWKDLGLVVVDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKSLR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLER 894 HDDKQ+AAALRRELLRDGQAFYVHNRVSSID AAR+R+LVPEARVVVAHGQMPEDLLE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TVQ FW RE DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGF 1014 YFLYPPQ PLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLG+EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T EEPKDVRIDLPVDAHLPPDYI SD Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 +SD VAAVVDEL DRYGALPEP SGITDV+A S+ATV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVT 1190 RL+P+ LPDSAQVRLKRMYPG HYRATT+TVQVPIPR GG+GAPRIRDVELVQMVA+L+T Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200 Query: 1191 ALAGKPQQDIGRTSLS---EDDAAATASGKERQ 1220 ALAGKP+Q IG T+ S ED + KERQ Sbjct: 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQ 1233 >tr|A5WL42|A5WL42_MYCTF Tax_Id=336982 SubName: Full=Transcription-repair coupling factor mfd;[Mycobacterium tuberculosis] Length = 1234 Score = 1987 bits (5148), Expect = 0.0 Identities = 1020/1233 (82%), Positives = 1095/1233 (88%), Gaps = 13/1233 (1%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MTAPG A DTPIAGLV+LAL+APTFQQL+ RA RPDELTL+ PASAR VASALA+QG Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 PLLVVTATGREADD+ AELRGVFG+AVAL PSWETLPHERLSPGVDTVG AH Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+D +LGPPL VVVT+VRSLLQPMTPQLG EP++L+VG E FD V+ARLVELAYTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MVGRRGEFAVRGGILD+FAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEI++ TLVA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 ACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 ACRELLL+EDV +HPA+E+TVTGS DMLAKLAEGI DGMEA+LPVL D Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGT---DAPVDVEAL 357 HALLTDQL +GTPVLVCDPEKVRTRAADLI+TGREFLEASWSVAA+GT APVDVE L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GGSGFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRA 417 GGSGF EL+QV+ AA+ +GHPWWTLSQLS+ESA EL+VRAAPSARGHQ+DID+IFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVP 477 H++TGGYA +V PGTGTAHR+VERL+ESD PA ML+PG APK GVVGVL+GPLRDGVI+P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVER 537 GANLVV+TET+LTG+R +A EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEMVER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 TVGGARREYLVLEYASAKRGGGS---DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTN 594 TVGGARREYLVLEYASAKRGGG+ DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDW N Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEV 654 TKTKAR+AVREIAGELV+LYAKRQASPGHAF+PDTPWQAE+EDAFGFTETVDQLTAI EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDR 714 K DMEK IPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF +R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQ 774 M+GFPVT+KGLSRFTD AESR VI+G+ADGSVD+VIGTHRLLQTGVRWKDLGLVVVDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKSLR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLER 894 HDDKQ+AAALRRELLRDGQAFYVHNRVSSID AAR+R+LVPEARVVVAHGQMPEDLLE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TVQ FW RE DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGF 1014 YFLYPPQ PLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLG+EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T EEPKDVRIDLPVDAHLPPDYI SD Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 +SD VAAVVDEL DRYGALPEP SGITDV+A S+ATV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVT 1190 RL+P+ LPDSAQVRLKRMYPG HYRATT+TVQVPIPR GG+GAPRIRDVELVQMVA+L+T Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200 Query: 1191 ALAGKPQQDIGRTSLS---EDDAAATASGKERQ 1220 ALAGKP+Q IG T+ S ED + KERQ Sbjct: 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQ 1233 >tr|A4KFW0|A4KFW0_MYCTU Tax_Id=395095 SubName: Full=Transcription-repair coupling factor mfd;[Mycobacterium tuberculosis str. Haarlem] Length = 1234 Score = 1987 bits (5148), Expect = 0.0 Identities = 1020/1233 (82%), Positives = 1095/1233 (88%), Gaps = 13/1233 (1%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MTAPG A DTPIAGLV+LAL+APTFQQL+ RA RPDELTL+ PASAR VASALA+QG Sbjct: 1 MTAPGPACSDTPIAGLVELALSAPTFQQLMQRAGGRPDELTLIAPASARLLVASALARQG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 PLLVVTATGREADD+ AELRGVFG+AVAL PSWETLPHERLSPGVDTVG AH Sbjct: 61 PLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAH 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+D +LGPPL VVVT+VRSLLQPMTPQLG EP++L+VG E FD V+ARLVELAYTRVD Sbjct: 121 PDDAQLGPPLGVVVTSVRSLLQPMTPQLGMMEPLTLTVGDESPFDGVVARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MVGRRGEFAVRGGILD+FAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEI++ TLVA Sbjct: 181 MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAF 240 Query: 241 ACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 ACRELLL+EDV +HPA+E+TVTGS DMLAKLAEGI DGMEA+LPVL D Sbjct: 241 ACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDG 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGT---DAPVDVEAL 357 HALLTDQL +GTPVLVCDPEKVRTRAADLI+TGREFLEASWSVAA+GT APVDVE L Sbjct: 301 HALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQL 360 Query: 358 GGSGFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRA 417 GGSGF EL+QV+ AA+ +GHPWWTLSQLS+ESA EL+VRAAPSARGHQ+DID+IFAMLRA Sbjct: 361 GGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGHQRDIDEIFAMLRA 420 Query: 418 HVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVP 477 H++TGGYA +V PGTGTAHR+VERL+ESD PA ML+PG APK GVVGVL+GPLRDGVI+P Sbjct: 421 HIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIP 480 Query: 478 GANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVER 537 GANLVV+TET+LTG+R +A EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEMVER Sbjct: 481 GANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVER 540 Query: 538 TVGGARREYLVLEYASAKRGGGS---DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTN 594 TVGGARREYLVLEYASAKRGGG+ DKLYVPMDSLDQLSRYVGGQAPALSRLGGSDW N Sbjct: 541 TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWAN 600 Query: 595 TKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEV 654 TKTKAR+AVREIAGELV+LYAKRQASPGHAF+PDTPWQAE+EDAFGFTETVDQLTAI EV Sbjct: 601 TKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660 Query: 655 KGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDR 714 K DMEK IPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF +R Sbjct: 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720 Query: 715 MAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQ 774 M+GFPVT+KGLSRFTD AESR VI+G+ADGSVD+VIGTHRLLQTGVRWKDLGLVVVDEEQ Sbjct: 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780 Query: 775 RFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIKSLR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLER 894 HDDKQ+AAALRRELLRDGQAFYVHNRVSSID AAR+R+LVPEARVVVAHGQMPEDLLE Sbjct: 841 HDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLET 900 Query: 895 TVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TVQ FW RE DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGF 1014 YFLYPPQ PLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLG+EQSGHVAGVGF Sbjct: 961 YFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVE----AYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 DLYVRLVGEA+E AYRAAADG+TV T EEPKDVRIDLPVDAHLPPDYI SD Sbjct: 1021 DLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 +SD VAAVVDEL DRYGALPEP SGITDV+A S+ATV Sbjct: 1081 YRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAASAATV 1140 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVT 1190 RL+P+ LPDSAQVRLKRMYPG HYRATT+TVQVPIPR GG+GAPRIRDVELVQMVA+L+T Sbjct: 1141 RLSPLTLPDSAQVRLKRMYPGAHYRATTATVQVPIPRAGGLGAPRIRDVELVQMVADLIT 1200 Query: 1191 ALAGKPQQDIGRTSLS---EDDAAATASGKERQ 1220 ALAGKP+Q IG T+ S ED + KERQ Sbjct: 1201 ALAGKPRQHIGITNPSPPGEDGRGRNTTIKERQ 1233 >tr|B8ZU68|B8ZU68_MYCLB Tax_Id=561304 (mfd)SubName: Full=Putative transcription-repair coupling factor;[Mycobacterium leprae] Length = 1224 Score = 1898 bits (4916), Expect = 0.0 Identities = 986/1217 (81%), Positives = 1052/1217 (86%), Gaps = 14/1217 (1%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MTAPG A DTPIAGLV+LALTAPTF QL+ RA RP EL L GPA AR FVASALA+ G Sbjct: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 PLLVVTATGREA ++TAELRGVFG AVA+FPSWETLPHERLSPGVDTVGA AH Sbjct: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+D RLGPPL+VVVTAVRSLLQPMT QLG EPV+LSVG EIGF+ VIARLVELAYTRVD Sbjct: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MVGRRGEFAVRGGILD+F PTAEHPVRVEFWGDEITEMRMFSV DQRSIPEI V TLVA+ Sbjct: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 Query: 241 ACRELLLTEDVXXXXXXXXXQ----HPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVL 296 ACRELLL++DV Q P E ++GSV D+LAKLAEGIP DGMEALLPVL Sbjct: 241 ACRELLLSDDVRARAVELAAQAAARRPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 Query: 297 RPDDHALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTD--APVDV 354 PDD+ALLTDQ A TPVL+CDPEKVR +AADLIKT R FLEASWSVAA+G D APVDV Sbjct: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV 360 Query: 355 EALGGSGFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAM 414 E L GSGF EL VQ AA SGHPWWTLSQLS+ESA EL++RAAPS RGHQ ID IFAM Sbjct: 361 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFAM 420 Query: 415 LRAHVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGV----VGVLKGPL 470 LRAHV+TGGYA +V PGTGTAHR+VERLAESDIP AMLEP AAP LG+ VGVLKGPL Sbjct: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIPGAMLEPAAAPGLGLRPGLVGVLKGPL 480 Query: 471 RDGVIVPGANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGR 530 DGV++PGANLV++TE +LTG+RAT VEGKRLAAKRR+ DPLALTAGDLVVHDQHGIGR Sbjct: 481 LDGVVIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGR 540 Query: 531 FVEMVERTVGGARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGS 590 FVEMVERTVGGARREYLVLEYAS K+ +DKLYVPMDSLDQLSRYVGGQAPALSRLGGS Sbjct: 541 FVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGS 600 Query: 591 DWTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTA 650 DW NTKTKAR AVREIAGELV+LYAKRQASPGHAF PDTPWQAEMEDAFGFTETVDQLTA Sbjct: 601 DWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTA 660 Query: 651 ITEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQT 710 ITEVKGDMEKS+PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHL+T Sbjct: 661 ITEVKGDMEKSVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRT 720 Query: 711 FTDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVV 770 FT+RMAGFPVTVKGLSRFTD AESR VI+G+A+GSVD+VIGTHRLLQTGV WKDLGLVVV Sbjct: 721 FTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVV 780 Query: 771 DEEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 830 DEEQ FGVEHKEHIKSLR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT Sbjct: 781 DEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 840 Query: 831 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPED 890 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSI AAR+ LVPEARVVVAHGQMPED Sbjct: 841 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPED 900 Query: 891 LLERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRE 950 LLE T++GFW RE+DILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVGRS E Sbjct: 901 LLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHE 960 Query: 951 RGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1010 RGYAYFLYPPQAPLTE AYDRL TIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA Sbjct: 961 RGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1020 Query: 1011 GVGFDLYVRLVGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 GVGFDLYVRLVGEAVEAYRA ADGKT TPEEPKDVRIDLPVDAHLPPDYI SD Sbjct: 1021 GVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 +SD+ VAAVVDELIDRYGALPEP SGI +V+APS++T+ Sbjct: 1081 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM 1140 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGG----VGAPRIRDVELVQMVA 1186 RL+P+ L DSAQVRLKRMYPG YRAT +TVQVPIPR G +G P IRDVELVQ VA Sbjct: 1141 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA 1200 Query: 1187 NLVTALAGKPQQDIGRT 1203 +L+TAL G P++ IG T Sbjct: 1201 DLITALQGLPRKVIGIT 1217 >tr|Q9CD43|Q9CD43_MYCLE Tax_Id=1769 (mfd)SubName: Full=Putative transcription-repair coupling factor;[Mycobacterium leprae] Length = 1224 Score = 1896 bits (4911), Expect = 0.0 Identities = 985/1217 (80%), Positives = 1051/1217 (86%), Gaps = 14/1217 (1%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MTAPG A DTPIAGLV+LALTAPTF QL+ RA RP EL L GPA AR FVASALA+ G Sbjct: 1 MTAPGPACLDTPIAGLVELALTAPTFGQLMERAGTRPAELILAGPACARLFVASALARLG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 PLLVVTATGREA ++TAELRGVFG AVA+FPSWETLPHERLSPGVDTVGA AH Sbjct: 61 PLLVVTATGREASNLTAELRGVFGAAVAMFPSWETLPHERLSPGVDTVGARLMVLRRLAH 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+D RLGPPL+VVVTAVRSLLQPMT QLG EPV+LSVG EIGF+ VIARLVELAYTRVD Sbjct: 121 PDDARLGPPLQVVVTAVRSLLQPMTAQLGLVEPVTLSVGDEIGFERVIARLVELAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MVGRRGEFAVRGGILD+F PTAEHPVRVEFWGDEITEMRMFSV DQRSIPEI V TLVA+ Sbjct: 181 MVGRRGEFAVRGGILDIFGPTAEHPVRVEFWGDEITEMRMFSVVDQRSIPEIGVDTLVAI 240 Query: 241 ACRELLLTEDVXXXXXXXXXQ----HPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVL 296 ACRELLL++DV Q P E ++GSV D+LAKLAEGIP DGMEALLPVL Sbjct: 241 ACRELLLSDDVRARAVELAAQAAARRPTEEPAISGSVTDVLAKLAEGIPVDGMEALLPVL 300 Query: 297 RPDDHALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTD--APVDV 354 PDD+ALLTDQ A TPVL+CDPEKVR +AADLIKT R FLEASWSVAA+G D APVDV Sbjct: 301 CPDDYALLTDQFAADTPVLLCDPEKVRIQAADLIKTDRAFLEASWSVAAIGADNAAPVDV 360 Query: 355 EALGGSGFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAM 414 E L GSGF EL VQ AA SGHPWWTLSQLS+ESA EL++RAAPS RGHQ ID IFAM Sbjct: 361 EQLYGSGFVELGDVQAAAIRSGHPWWTLSQLSDESALELDIRAAPSTRGHQHAIDGIFAM 420 Query: 415 LRAHVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGV----VGVLKGPL 470 LRAHV+TGGYA +V PGTGTAHR+VERLAESDIP AMLEP AAP LG+ VGVLKGPL Sbjct: 421 LRAHVATGGYAAIVTPGTGTAHRVVERLAESDIPGAMLEPAAAPGLGLRPGLVGVLKGPL 480 Query: 471 RDGVIVPGANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGR 530 DGV++PGANLV++TE +LTG+RAT VEGKRLAAKRR+ DPLALTAGDLVVHDQHGIGR Sbjct: 481 LDGVVIPGANLVIITEADLTGSRATPVEGKRLAAKRRSAADPLALTAGDLVVHDQHGIGR 540 Query: 531 FVEMVERTVGGARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGS 590 FVEMVERTVGGARREYLVLEYAS K+ +DKLYVPMDSLDQLSRYVGGQAPALSRLGGS Sbjct: 541 FVEMVERTVGGARREYLVLEYASNKKSKQADKLYVPMDSLDQLSRYVGGQAPALSRLGGS 600 Query: 591 DWTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTA 650 DW NTKTKAR AVREIAGELV+LYAKRQASPGHAF PDTPWQAEMEDAFGFTETVDQLTA Sbjct: 601 DWANTKTKARCAVREIAGELVSLYAKRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTA 660 Query: 651 ITEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQT 710 ITEVKGDMEKS+PMDRVICGDVGYGK EIAVRAAFKAVQDGKQVAVLVPTTLLADQHL+T Sbjct: 661 ITEVKGDMEKSVPMDRVICGDVGYGKAEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLRT 720 Query: 711 FTDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVV 770 FT+RMAGFPVTVKGLSRFTD AESR VI+G+A+GSVD+VIGTHRLLQTGV WKDLGLVVV Sbjct: 721 FTERMAGFPVTVKGLSRFTDAAESRAVIDGLAEGSVDIVIGTHRLLQTGVCWKDLGLVVV 780 Query: 771 DEEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 830 DEEQ FGVEHKEHIKSLR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT Sbjct: 781 DEEQWFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLT 840 Query: 831 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPED 890 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSI AAR+ LVPEARVVVAHGQMPED Sbjct: 841 YVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIYQAAARVCGLVPEARVVVAHGQMPED 900 Query: 891 LLERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRE 950 LLE T++GFW RE+DILVCTTIVETGLDI NANTL+VERADTFGLSQLHQLRGRVGRS E Sbjct: 901 LLETTMRGFWNREYDILVCTTIVETGLDIPNANTLVVERADTFGLSQLHQLRGRVGRSHE 960 Query: 951 RGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1010 RGYAYFLYPPQAPLTE AYDRL TIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA Sbjct: 961 RGYAYFLYPPQAPLTEIAYDRLVTIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVA 1020 Query: 1011 GVGFDLYVRLVGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 GVGFDLYVRLVGEAVEAYRA ADGKT TPEEPKDVRIDLPVDAHLPPDYI SD Sbjct: 1021 GVGFDLYVRLVGEAVEAYRAVADGKTAITPEEPKDVRIDLPVDAHLPPDYIASDRLRLEG 1080 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 +SD+ VAAVVDELIDRYGALPEP SGI +V+APS++T+ Sbjct: 1081 YRRLAAASSDTEVAAVVDELIDRYGALPEPAQRLVAVAQLRLLCRGSGIIEVTAPSASTM 1140 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGG----VGAPRIRDVELVQMVA 1186 RL+P+ L DSAQVRLKRMYPG YRAT +TVQVPIPR G +G P IRDVELVQ VA Sbjct: 1141 RLSPIRLIDSAQVRLKRMYPGAQYRATAATVQVPIPRAGSSGGTLGVPCIRDVELVQAVA 1200 Query: 1187 NLVTALAGKPQQDIGRT 1203 +L+TAL G P++ IG T Sbjct: 1201 DLITALQGLPRKVIGIT 1217 >tr|A0R3C5|A0R3C5_MYCS2 Tax_Id=246196 (mfd)SubName: Full=Transcription-repair coupling factor;[Mycobacterium smegmatis] Length = 1215 Score = 1880 bits (4870), Expect = 0.0 Identities = 946/1207 (78%), Positives = 1045/1207 (86%), Gaps = 1/1207 (0%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MTAPG S TPIAGLV+LAL+ P+ Q +I RA+DRP +L LVGPASAR VA+ALAQ G Sbjct: 1 MTAPGHTSVQTPIAGLVELALSDPSLQDVIRRAADRPADLALVGPASARVLVAAALAQNG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 PLLVV ATGREAD++TAELRGVFG++VALFPSWETLPHERLSPGV+TVGA A Sbjct: 61 PLLVVAATGREADELTAELRGVFGDSVALFPSWETLPHERLSPGVETVGARLMLLRRLAR 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+D LG PLRVVVT RSLLQPM P L EPV+LSVG E+ F++V+ARLV+L+YTRVD Sbjct: 121 PDDETLGAPLRVVVTTTRSLLQPMAPDLVDIEPVTLSVGAEMEFEDVVARLVDLSYTRVD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMR F++ADQRSIPE+ V T+VAV Sbjct: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRAFAIADQRSIPEVPVQTVVAV 240 Query: 241 ACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 CRELL+T+DV +HP +ENTV G+V DMLAKLAEGIP DGMEALLP+L P + Sbjct: 241 PCRELLMTDDVRERAAALAAEHPTTENTVPGTVPDMLAKLAEGIPVDGMEALLPLLHPIE 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGS 360 LT L EG PVLVCDPEKVRTRAADLIKTGREFLEASWS AA+G DAP+D+EALG S Sbjct: 301 PTTLTRHLPEGAPVLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEALGAS 360 Query: 361 GFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVS 420 GF E+ + AA GHPWWTLSQLS+ESA EL++R+APSARG Q ++++IFAMLRAHV+ Sbjct: 361 GFVTFEEAREAAREGGHPWWTLSQLSDESAVELDIRSAPSARGSQHNLEEIFAMLRAHVA 420 Query: 421 TGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN 480 TGGYA +V PG GTAHR+VE+L E+D A +LEPG APK GVVGVLKGPL GV++PGAN Sbjct: 421 TGGYAAVVTPGIGTAHRVVEQLGEADTAATILEPGTAPKAGVVGVLKGPLCSGVVLPGAN 480 Query: 481 LVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG 540 LV++TET+LTGNR TA EG++LAAKRRN VDPLALTAGDLVVHDQHGIG+FVEM ER VG Sbjct: 481 LVIITETDLTGNRVTANEGRKLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVG 540 Query: 541 GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKAR 600 GARREYLVLEYAS+KRGGG+DKLYVPMDSLDQLSRYVGG+AP+LSRLGGSDW NTKTKAR Sbjct: 541 GARREYLVLEYASSKRGGGTDKLYVPMDSLDQLSRYVGGEAPSLSRLGGSDWANTKTKAR 600 Query: 601 KAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEK 660 +AVREIA ELVALYAKRQ++PGHAF PDTPWQAEMEDAFGFTET+DQLTAI EVK DMEK Sbjct: 601 RAVREIASELVALYAKRQSAPGHAFGPDTPWQAEMEDAFGFTETIDQLTAIQEVKSDMEK 660 Query: 661 SIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPV 720 +PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT+RMAGFPV Sbjct: 661 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMAGFPV 720 Query: 721 TVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEH 780 TVKGLSRFTDPAESR VIEG+ DGSVDVVIGTHRLLQTGV WKDLGL++VDEEQRFGVEH Sbjct: 721 TVKGLSRFTDPAESRAVIEGLKDGSVDVVIGTHRLLQTGVTWKDLGLIIVDEEQRFGVEH 780 Query: 781 KEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 KEHIKS+R+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV Sbjct: 781 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 Query: 841 AAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGFW 900 AAALRRELLRDGQAFY+HNRV +ID+ AAR+R+LVPEARVVVAHGQM E+ LE+TV+GFW Sbjct: 841 AAALRRELLRDGQAFYIHNRVRTIDEAAARVRQLVPEARVVVAHGQMNEETLEKTVEGFW 900 Query: 901 QREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 RE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP Sbjct: 901 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 Query: 961 QAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRL 1020 PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGFDLYVRL Sbjct: 961 NKPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL 1020 Query: 1021 VGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXXXXTSD 1080 VGEAVEAYRAAADGKTV TP+E KDVRIDLPVDAHLPP+YIGSD D Sbjct: 1021 VGEAVEAYRAAADGKTVATPQEQKDVRIDLPVDAHLPPEYIGSDRLRLEAYRRLAAAADD 1080 Query: 1081 SGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAPMDLPDS 1140 VA+VVDELIDRYG LPEP GIT++ A S++TVRL+PM LPDS Sbjct: 1081 DAVASVVDELIDRYGPLPEPAQRLVAVARLRLLCREFGITEIGAVSASTVRLSPMVLPDS 1140 Query: 1141 AQVRLKRMYPGGHYRATTSTVQVPIPRDG-GVGAPRIRDVELVQMVANLVTALAGKPQQD 1199 AQ+RLKRMYPGGHYRATTSTVQVP+PR G GVGAPRIRD+ELVQ VA LV L GK Q D Sbjct: 1141 AQLRLKRMYPGGHYRATTSTVQVPLPRAGEGVGAPRIRDLELVQWVAGLVLVLNGKGQGD 1200 Query: 1200 IGRTSLS 1206 + + S Sbjct: 1201 VDMSKFS 1207 >tr|A1TEF0|A1TEF0_MYCVP Tax_Id=350058 SubName: Full=Transcription-repair coupling factor;[Mycobacterium vanbaalenii] Length = 1212 Score = 1877 bits (4863), Expect = 0.0 Identities = 943/1206 (78%), Positives = 1037/1206 (85%), Gaps = 3/1206 (0%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MT G TPIAGLVDLAL P Q++ RA DRP +L LVGPASAR FVASALAQ G Sbjct: 1 MTVSGTLHVHTPIAGLVDLALRDPALQEIARRAGDRPADLNLVGPASARVFVASALAQPG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 LLVVTATGREADD+TAELRGVFG+AVALFPSWETLPHERLSPGVDTVGA H Sbjct: 61 LLLVVTATGREADDLTAELRGVFGDAVALFPSWETLPHERLSPGVDTVGARMMLLRRLTH 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+D RLGPPLR+VVT RSLLQPM P L +PV+L+VG E FD V+ARLV+LAY+RVD Sbjct: 121 PDDARLGPPLRIVVTTARSLLQPMAPDLAEVDPVTLTVGGEADFDAVVARLVDLAYSRVD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MVG+RGEFAVRGGILD+F PTAEHPVRVEFWGDE++EMRMFSVADQRSIPEIE+ TL+AV Sbjct: 181 MVGKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEIEIDTLIAV 240 Query: 241 ACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 CRELLLT +V +HP EN+VTGSV DMLAKLAEGIP DGMEALLP+LRP D Sbjct: 241 PCRELLLTAEVRDRAAALASEHPVLENSVTGSVPDMLAKLAEGIPVDGMEALLPLLRPSD 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGS 360 A L D L EGTP+LVCDPEKVRTRAADLIKTGREFLEASWS AA+G D P+D+EALG S Sbjct: 301 FATLPDHLPEGTPLLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDVPIDIEALGVS 360 Query: 361 GFAELEQVQTAASSSGHPWWTLSQLSEES--ATELEVRAAPSARGHQKDIDDIFAMLRAH 418 G+ + AA + GHPWWTLSQL + +T L++R APSARG Q ++D+IFAMLRAH Sbjct: 361 GYVGYGDARDAARAGGHPWWTLSQLDSGAGESTALDIRPAPSARGQQHNLDEIFAMLRAH 420 Query: 419 VSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPG 478 V+TGG+ V+V PG+GTA R+VE+L+ESDIPA +LEPGA P GVVGV+KGPL DGV++PG Sbjct: 421 VATGGFGVVVTPGSGTAMRVVEQLSESDIPATVLEPGAVPGEGVVGVIKGPLHDGVVIPG 480 Query: 479 ANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERT 538 ANLVV+TET+LTGNRA A EGK+LAAKRRN VDPLALTAGDLVVHDQHGIGRFVEM ER Sbjct: 481 ANLVVITETDLTGNRAAATEGKKLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERV 540 Query: 539 VGGARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTK 598 +GGARREYLVLEYASAKRGGGSD+LYVPMDSLDQLSRYVGG+AP LSRLGGSDW NTKTK Sbjct: 541 IGGARREYLVLEYASAKRGGGSDRLYVPMDSLDQLSRYVGGEAPTLSRLGGSDWANTKTK 600 Query: 599 ARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDM 658 ARKAVREIA ELVALYAKRQAS GHAFAPDTPWQ EMEDAFGFTETVDQLTAITEVK DM Sbjct: 601 ARKAVREIAAELVALYAKRQASAGHAFAPDTPWQREMEDAFGFTETVDQLTAITEVKSDM 660 Query: 659 EKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGF 718 EK +PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT+RM GF Sbjct: 661 EKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNRMTGF 720 Query: 719 PVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGV 778 PVTVKGLSRFTDPAESR IEGM DGSVD+VIGTHRLLQTGV WKDLGLV+VDEEQRFGV Sbjct: 721 PVTVKGLSRFTDPAESRATIEGMKDGSVDIVIGTHRLLQTGVTWKDLGLVIVDEEQRFGV 780 Query: 779 EHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK 838 EHKEHIKS+R+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK Sbjct: 781 EHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK 840 Query: 839 QVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQG 898 QVAAALRRE+LRDGQAFY+HNRV +ID AA++R+LVPEARVVVAHGQMPE+ LE+TV+G Sbjct: 841 QVAAALRREMLRDGQAFYIHNRVRTIDSAAAKVRQLVPEARVVVAHGQMPEEQLEKTVEG 900 Query: 899 FWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY 958 FW RE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY Sbjct: 901 FWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY 960 Query: 959 PPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYV 1018 PP+ PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGFDLYV Sbjct: 961 PPEVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYV 1020 Query: 1019 RLVGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXXXXT 1078 RLVGEAVEAYRAAADGKTV PEEPKDVRIDLPVDAHLPPDYIGSD Sbjct: 1021 RLVGEAVEAYRAAADGKTVAAPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEAYRRLAAAP 1080 Query: 1079 SDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAPMDLP 1138 D+ V AV++EL+DRYG LPEP G+T++ APS+ T+R++PM LP Sbjct: 1081 DDAAVDAVIEELVDRYGPLPEPAQRLVAVARLRLLARAHGVTEIGAPSATTLRISPMTLP 1140 Query: 1139 DSAQVRLKRMYPGGHYRATTSTVQVPIPRDG-GVGAPRIRDVELVQMVANLVTALAGKPQ 1197 DSAQ+RLKR+Y G +YRATTSTVQVP+PR G GVG+PRIRD+ELV VA L+ A+ GKP Sbjct: 1141 DSAQLRLKRLYSGANYRATTSTVQVPVPRAGSGVGSPRIRDLELVAFVAGLLLAIDGKPG 1200 Query: 1198 QDIGRT 1203 +++ T Sbjct: 1201 EEVDIT 1206 >tr|A3Q5G2|A3Q5G2_MYCSJ Tax_Id=164757 SubName: Full=Transcription-repair coupling factor;[Mycobacterium sp.] Length = 1211 Score = 1867 bits (4835), Expect = 0.0 Identities = 938/1201 (78%), Positives = 1031/1201 (85%), Gaps = 1/1201 (0%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MT G TPIAGL++LAL P L ARA+D+PD+L +VGPASAR V +ALAQ G Sbjct: 1 MTVSGLHHVQTPIAGLIELALRDPCLADLSARAADKPDDLAMVGPASARLLVTAALAQAG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 PLLVVTATGREADD+TAELRGV G++ ALFPSWETLPHERLSPGVDTVGA AH Sbjct: 61 PLLVVTATGREADDLTAELRGVIGDSAALFPSWETLPHERLSPGVDTVGARMMLLRRLAH 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+D RLGPPLRVVVT RSL+QPM P L EPV+L+VG E+ FD VI RLV+LAYTR D Sbjct: 121 PDDARLGPPLRVVVTTARSLVQPMAPGLAEVEPVTLTVGAEMDFDGVIKRLVDLAYTRCD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MV +RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMRMF+VADQRSIPEIEV T++AV Sbjct: 181 MVAKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRMFAVADQRSIPEIEVDTVIAV 240 Query: 241 ACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 CRELL++++V +HP EN+V GSV DMLAKLAEGIP DGMEALLP+LRP D Sbjct: 241 PCRELLMSDEVRSRAAVLAAEHPTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLLRPTD 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGS 360 A+L+D L +G P+LVCDPEKVRTRA DLIKTGREFLEASWS AA+G AP+D+EA+G S Sbjct: 301 LAMLSDHLPDGAPILVCDPEKVRTRAGDLIKTGREFLEASWSTAAVGGAAPIDLEAMGAS 360 Query: 361 GFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVS 420 GF E+V+T A + GHPWWTLSQLS+E A EL++R+APSARG Q +++IFAMLRAHV+ Sbjct: 361 GFLGFEEVRTGARAGGHPWWTLSQLSDEKAIELDIRSAPSARGQQSSVEEIFAMLRAHVA 420 Query: 421 TGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN 480 TGGY +V PG GTAHR+VE+L E+D PA MLEPG PK GVVGVLKGPL DGV++PGAN Sbjct: 421 TGGYGAVVTPGAGTAHRVVEQLGENDTPATMLEPGEEPKAGVVGVLKGPLHDGVVLPGAN 480 Query: 481 LVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG 540 LV+VTE +LTG+R TA EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEM ER VG Sbjct: 481 LVIVTEADLTGSRVTATEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERVVG 540 Query: 541 GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKAR 600 GARREYLVLEYAS+KRGGGSD+LYVPMDSLDQLSRYVGG+AP+LS+LGGSDW NTKTKAR Sbjct: 541 GARREYLVLEYASSKRGGGSDRLYVPMDSLDQLSRYVGGEAPSLSKLGGSDWANTKTKAR 600 Query: 601 KAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEK 660 +AVREIA ELVALYAKRQA+PGHAF+PDTPWQ EMEDAFGFTETVDQLTAI EVK DMEK Sbjct: 601 RAVREIASELVALYAKRQAAPGHAFSPDTPWQNEMEDAFGFTETVDQLTAIEEVKADMEK 660 Query: 661 SIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPV 720 +PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT RMAGFPV Sbjct: 661 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARMAGFPV 720 Query: 721 TVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEH 780 TVKGLSRFTDPAESR +EGM DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQRFGVEH Sbjct: 721 TVKGLSRFTDPAESRAALEGMKDGSVDIVIGTHRLLQTGVVWKDLGLIIVDEEQRFGVEH 780 Query: 781 KEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 KEHIKS+R+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP DDKQV Sbjct: 781 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPQDDKQV 840 Query: 841 AAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGFW 900 AAALRRELLRDGQAFY+HNRV +ID A++I LVPEARVVVAHGQMPE+LLERTV+GFW Sbjct: 841 AAALRRELLRDGQAFYIHNRVRTIDQAASKIAALVPEARVVVAHGQMPEELLERTVEGFW 900 Query: 901 QREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 RE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP Sbjct: 901 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 Query: 961 QAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRL 1020 + PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGFDLYVRL Sbjct: 961 EQPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL 1020 Query: 1021 VGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXXXXTSD 1080 VGEAVEAYRAAADGKTV TP+E KDVRIDLPVDA+LPPDYIGSD D Sbjct: 1021 VGEAVEAYRAAADGKTVATPQETKDVRIDLPVDANLPPDYIGSDRLRLEAYRRLAAAQDD 1080 Query: 1081 SGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAPMDLPDS 1140 +GV AV+DEL+DRYG LPEP GITDVS+ S++TV+L+PM+LPDS Sbjct: 1081 AGVDAVIDELVDRYGPLPEPAQRLVGVARLRLVCREYGITDVSSVSASTVKLSPMELPDS 1140 Query: 1141 AQVRLKRMYPGGHYRATTSTVQVPIPR-DGGVGAPRIRDVELVQMVANLVTALAGKPQQD 1199 AQ+RLKRMYPG YRATT TV VPIPR VGAPRIRD ELV MVA LV AL GKPQ Sbjct: 1141 AQLRLKRMYPGATYRATTGTVSVPIPRATDSVGAPRIRDAELVAMVAGLVLALNGKPQAQ 1200 Query: 1200 I 1200 I Sbjct: 1201 I 1201 >tr|Q1B434|Q1B434_MYCSS Tax_Id=164756 SubName: Full=Transcription-repair coupling factor;[Mycobacterium sp.] Length = 1211 Score = 1864 bits (4828), Expect = 0.0 Identities = 937/1201 (78%), Positives = 1030/1201 (85%), Gaps = 1/1201 (0%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MT G TPIAGL++LAL P L ARA+D+PD+L +VGPASAR V +ALAQ G Sbjct: 1 MTVSGLHHVQTPIAGLIELALRDPCLADLSARAADKPDDLAMVGPASARLLVTAALAQAG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 PLLVVTATGREADD+TAELRGV G++ ALFPSWETLPHERLSPGVDTVGA AH Sbjct: 61 PLLVVTATGREADDLTAELRGVIGDSAALFPSWETLPHERLSPGVDTVGARMMLLRRLAH 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+D RLGPPLRVVVT RSL+QPM P L EPV+L+VG E+ FD VI RLV+LAYTR D Sbjct: 121 PDDARLGPPLRVVVTTARSLVQPMAPGLAEVEPVTLTVGAEMDFDGVIKRLVDLAYTRCD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MV +RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMRMF+VADQRSIPEIEV T++AV Sbjct: 181 MVAKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRMFAVADQRSIPEIEVDTVIAV 240 Query: 241 ACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 CRELL++++V +HP EN+V GSV DMLAKLAEGIP DGMEALLP+LRP D Sbjct: 241 PCRELLMSDEVRSRAAVLAAEHPTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLLRPTD 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGS 360 A+L+D L +G P+LVCDPEKVRTRA DLIKTGREFLEASWS AA+G AP+D+EA+G S Sbjct: 301 LAMLSDHLPDGAPILVCDPEKVRTRAGDLIKTGREFLEASWSTAAVGGAAPIDLEAMGAS 360 Query: 361 GFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVS 420 GF E+V+T A + GHPWWTLSQLS+E A EL++R+APSARG Q +++IFAMLRAHV+ Sbjct: 361 GFLGFEEVRTGARAGGHPWWTLSQLSDEKAIELDIRSAPSARGQQSSVEEIFAMLRAHVA 420 Query: 421 TGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN 480 TGGY +V PG GTAHR+VE+L E+D PA MLEPG PK GVVGVLKGPL DGV++PGAN Sbjct: 421 TGGYGAVVTPGAGTAHRVVEQLGENDTPATMLEPGEEPKAGVVGVLKGPLHDGVVLPGAN 480 Query: 481 LVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG 540 LV+VTE +LTG+R TA EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEM ER VG Sbjct: 481 LVIVTEADLTGSRVTATEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERVVG 540 Query: 541 GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKAR 600 GARREYLVLEYAS+KRGGGSD+LYVPMDSLDQLSRYVGG+AP+LS+LGGSDW NTKTKAR Sbjct: 541 GARREYLVLEYASSKRGGGSDRLYVPMDSLDQLSRYVGGEAPSLSKLGGSDWANTKTKAR 600 Query: 601 KAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEK 660 +AVREIA ELVALYAKRQA+PGHAF+PDTPWQ EMEDAFGFTETVDQLTAI EVK DMEK Sbjct: 601 RAVREIASELVALYAKRQAAPGHAFSPDTPWQNEMEDAFGFTETVDQLTAIEEVKADMEK 660 Query: 661 SIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPV 720 +PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT RMAGFPV Sbjct: 661 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARMAGFPV 720 Query: 721 TVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEH 780 TVKGLSRFTDPAESR +EGM DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQRFGVEH Sbjct: 721 TVKGLSRFTDPAESRAALEGMKDGSVDIVIGTHRLLQTGVVWKDLGLIIVDEEQRFGVEH 780 Query: 781 KEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 KEHIKS+R+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP DDKQV Sbjct: 781 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPQDDKQV 840 Query: 841 AAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGFW 900 AAALRRELLRDGQAFY+HNRV +ID A++I LVPEARVVVAHGQMPE+LLERTV+GFW Sbjct: 841 AAALRRELLRDGQAFYIHNRVRTIDQAASKIAALVPEARVVVAHGQMPEELLERTVEGFW 900 Query: 901 QREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 RE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP Sbjct: 901 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 Query: 961 QAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRL 1020 + PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGFDLYVRL Sbjct: 961 EQPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL 1020 Query: 1021 VGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXXXXTSD 1080 VGEAVEAYRAAADGKTV TP+E KDVRIDLPVDA+LPPDYIGSD D Sbjct: 1021 VGEAVEAYRAAADGKTVATPQETKDVRIDLPVDANLPPDYIGSDRLRLEAYRRLAAAQDD 1080 Query: 1081 SGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAPMDLPDS 1140 +GV AV+DEL+DRYG LPEP GITDVS+ S++TV+L+PM+LPDS Sbjct: 1081 AGVDAVIDELVDRYGPLPEPAQRLVGVARLRLVCREYGITDVSSVSASTVKLSPMELPDS 1140 Query: 1141 AQVRLKRMYPGGHYRATTSTVQVPIPR-DGGVGAPRIRDVELVQMVANLVTALAGKPQQD 1199 A +RLKRMYPG YRATT TV VPIPR VGAPRIRD ELV MVA LV AL GKPQ Sbjct: 1141 ALLRLKRMYPGATYRATTGTVSVPIPRATDSVGAPRIRDAELVAMVAGLVLALNGKPQAQ 1200 Query: 1200 I 1200 I Sbjct: 1201 I 1201 >tr|A1UL14|A1UL14_MYCSK Tax_Id=189918 SubName: Full=Transcription-repair coupling factor;[Mycobacterium sp.] Length = 1211 Score = 1864 bits (4828), Expect = 0.0 Identities = 937/1201 (78%), Positives = 1030/1201 (85%), Gaps = 1/1201 (0%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MT G TPIAGL++LAL P L ARA+D+PD+L +VGPASAR V +ALAQ G Sbjct: 1 MTVSGLHHVQTPIAGLIELALRDPCLADLSARAADKPDDLAMVGPASARLLVTAALAQAG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 PLLVVTATGREADD+TAELRGV G++ ALFPSWETLPHERLSPGVDTVGA AH Sbjct: 61 PLLVVTATGREADDLTAELRGVIGDSAALFPSWETLPHERLSPGVDTVGARMMLLRRLAH 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+D RLGPPLRVVVT RSL+QPM P L EPV+L+VG E+ FD VI RLV+LAYTR D Sbjct: 121 PDDARLGPPLRVVVTTARSLVQPMAPGLAEVEPVTLTVGAEMDFDGVIKRLVDLAYTRCD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MV +RGEFAVRGGILD+F PTAEHPVRVEFWGDEI+EMRMF+VADQRSIPEIEV T++AV Sbjct: 181 MVAKRGEFAVRGGILDVFPPTAEHPVRVEFWGDEISEMRMFAVADQRSIPEIEVDTVIAV 240 Query: 241 ACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 CRELL++++V +HP EN+V GSV DMLAKLAEGIP DGMEALLP+LRP D Sbjct: 241 PCRELLMSDEVRSRAAVLAAEHPTHENSVPGSVPDMLAKLAEGIPVDGMEALLPLLRPTD 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGS 360 A+L+D L +G P+LVCDPEKVRTRA DLIKTGREFLEASWS AA+G AP+D+EA+G S Sbjct: 301 LAMLSDHLPDGAPILVCDPEKVRTRAGDLIKTGREFLEASWSTAAVGGAAPIDLEAMGAS 360 Query: 361 GFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVS 420 GF E+V+T A + GHPWWTLSQLS+E A EL++R+APSARG Q +++IFAMLRAHV+ Sbjct: 361 GFLGFEEVRTGARAGGHPWWTLSQLSDEKAIELDIRSAPSARGQQSSVEEIFAMLRAHVA 420 Query: 421 TGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN 480 TGGY +V PG GTAHR+VE+L E+D PA MLEPG PK GVVGVLKGPL DGV++PGAN Sbjct: 421 TGGYGAVVTPGAGTAHRVVEQLGENDTPATMLEPGEEPKAGVVGVLKGPLHDGVVLPGAN 480 Query: 481 LVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG 540 LV+VTE +LTG+R TA EGKRLAAKRRN VDPLALTAGDLVVHDQHGIGRFVEM ER VG Sbjct: 481 LVIVTEADLTGSRVTATEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERVVG 540 Query: 541 GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKAR 600 GARREYLVLEYAS+KRGGGSD+LYVPMDSLDQLSRYVGG+AP+LS+LGGSDW NTKTKAR Sbjct: 541 GARREYLVLEYASSKRGGGSDRLYVPMDSLDQLSRYVGGEAPSLSKLGGSDWANTKTKAR 600 Query: 601 KAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEK 660 +AVREIA ELVALYAKRQA+PGHAF+PDTPWQ EMEDAFGFTETVDQLTAI EVK DMEK Sbjct: 601 RAVREIASELVALYAKRQAAPGHAFSPDTPWQNEMEDAFGFTETVDQLTAIEEVKADMEK 660 Query: 661 SIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPV 720 +PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT RMAGFPV Sbjct: 661 PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARMAGFPV 720 Query: 721 TVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEH 780 TVKGLSRFTDPAESR +EGM DGSVD+VIGTHRLLQTGV WKDLGL++VDEEQRFGVEH Sbjct: 721 TVKGLSRFTDPAESRAALEGMKDGSVDIVIGTHRLLQTGVVWKDLGLIIVDEEQRFGVEH 780 Query: 781 KEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQV 840 KEHIKS+R+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP DDKQV Sbjct: 781 KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPQDDKQV 840 Query: 841 AAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGFW 900 AAALRRELLRDGQAFY+HNRV +ID A++I LVPEARVVVAHGQMPE+LLERTV+GFW Sbjct: 841 AAALRRELLRDGQAFYIHNRVRTIDQAASKIAALVPEARVVVAHGQMPEELLERTVEGFW 900 Query: 901 QREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 RE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP Sbjct: 901 NREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP 960 Query: 961 QAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRL 1020 + PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGFDLYVRL Sbjct: 961 EQPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL 1020 Query: 1021 VGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXXXXTSD 1080 VGEAVEAYRAAADGKTV TP+E KDVRIDLPVDA+LPPDYIGSD D Sbjct: 1021 VGEAVEAYRAAADGKTVATPQETKDVRIDLPVDANLPPDYIGSDRLRLEAYRRLAAAQDD 1080 Query: 1081 SGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAPMDLPDS 1140 +GV AV+DEL+DRYG LPEP GITDVS+ S++TV+L+PM+LPDS Sbjct: 1081 AGVDAVIDELVDRYGPLPEPAQRLVGVARLRLVCREYGITDVSSVSASTVKLSPMELPDS 1140 Query: 1141 AQVRLKRMYPGGHYRATTSTVQVPIPR-DGGVGAPRIRDVELVQMVANLVTALAGKPQQD 1199 A +RLKRMYPG YRATT TV VPIPR VGAPRIRD ELV MVA LV AL GKPQ Sbjct: 1141 ALLRLKRMYPGATYRATTGTVSVPIPRATDSVGAPRIRDAELVAMVAGLVLALNGKPQAQ 1200 Query: 1200 I 1200 I Sbjct: 1201 I 1201 >tr|A4T6M5|A4T6M5_MYCGI Tax_Id=350054 SubName: Full=Transcription-repair coupling factor;[Mycobacterium gilvum] Length = 1198 Score = 1837 bits (4759), Expect = 0.0 Identities = 934/1197 (78%), Positives = 1021/1197 (85%), Gaps = 6/1197 (0%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MTA G TPIAGLV LAL P+ Q++ R DRP +L VGPASAR FVASALAQ G Sbjct: 1 MTASGTLHVHTPIAGLVGLALRDPSLQEIARRGVDRPADLHFVGPASARLFVASALAQAG 60 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 LLVVTATGREADD+TAELRGVFG+AVA+FPSWETLPHERLSPGVDTVGA A Sbjct: 61 LLLVVTATGREADDLTAELRGVFGDAVAMFPSWETLPHERLSPGVDTVGARMMLLRRLAF 120 Query: 121 PEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD 180 P+D RLG PLRVVVT RSLLQPM P L R +PV+L+VG E FDE +ARLV+LAYTRVD Sbjct: 121 PDDARLGEPLRVVVTTARSLLQPMAPDLARIDPVTLTVGGEADFDETVARLVDLAYTRVD 180 Query: 181 MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV 240 MVG+RGEFAVRGGILDLF PTAEHPVRVEFWGDEI+EMRMFSVADQRSIPEIE+ T++AV Sbjct: 181 MVGKRGEFAVRGGILDLFPPTAEHPVRVEFWGDEISEMRMFSVADQRSIPEIEIDTVIAV 240 Query: 241 ACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD 300 CRELLLT DV +HP SEN V GSV DMLA+LAEGIP DGMEALLP+LRP D Sbjct: 241 PCRELLLTADVRERAAALAEEHPVSENNVPGSVPDMLARLAEGIPVDGMEALLPLLRPSD 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGS 360 A L D L EGTP+LVCDPEKVRTRAADLIKTGREFLEASWS AA+G D P+D+EALG S Sbjct: 301 FATLPDHLPEGTPLLVCDPEKVRTRAADLIKTGREFLEASWSTAAVGGDVPIDLEALGAS 360 Query: 361 GFAELEQVQTAASSSGHPWWTLSQLSEES--ATELEVRAAPSARGHQKDIDDIFAMLRAH 418 G+ + + AA GH WWTLSQL + +T L++R APSARG Q ++++IFAMLRAH Sbjct: 361 GYVTYNEARDAARDGGHGWWTLSQLDSGAGESTALDIRPAPSARG-QHNLEEIFAMLRAH 419 Query: 419 VSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPG 478 V+TGG V+V PG GT R+VE+L+ESD PA +LEPG APK GVVGVLKGPL DGV++PG Sbjct: 420 VATGGCGVVVTPGAGTCQRVVEQLSESDTPAMILEPGMAPKDGVVGVLKGPLHDGVVIPG 479 Query: 479 ANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERT 538 ANLVV+TET+LTGNRA A EGK+LAAKRRN VDPLALTAGDLVVHDQHGIGRFVEM ER Sbjct: 480 ANLVVITETDLTGNRAAATEGKKLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERV 539 Query: 539 VGGARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTK 598 +GGARREYLVLEYASAKRGGG+D+LYVPMDSLDQLSRYVGG+AP LSRLGGSDW NTKTK Sbjct: 540 IGGARREYLVLEYASAKRGGGADRLYVPMDSLDQLSRYVGGEAPTLSRLGGSDWANTKTK 599 Query: 599 ARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDM 658 AR+AVREIA ELV LYAKRQASPGHAF+PDTPWQ EMEDAFGFTETVDQLTAITEVK DM Sbjct: 600 ARRAVREIAAELVTLYAKRQASPGHAFSPDTPWQVEMEDAFGFTETVDQLTAITEVKSDM 659 Query: 659 EKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGF 718 EK +PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT RM GF Sbjct: 660 EKPVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARMTGF 719 Query: 719 PVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGV 778 PVTV+GLSRFTDPA SR +EGM DGSVD+VIGTHRL+QTGV WKDLGLV+VDEEQRFGV Sbjct: 720 PVTVRGLSRFTDPASSRATLEGMKDGSVDIVIGTHRLIQTGVTWKDLGLVIVDEEQRFGV 779 Query: 779 EHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK 838 EHKEHIKS+R+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVG HDDK Sbjct: 780 EHKEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGQHDDK 839 Query: 839 QVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQG 898 QVAAALRRE+LRDGQAFY+HNRV +ID AA+IR+LVPEARVVVAHGQMPE+ LE+TV+G Sbjct: 840 QVAAALRREMLRDGQAFYIHNRVRTIDSAAAKIRQLVPEARVVVAHGQMPEEQLEKTVEG 899 Query: 899 FWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY 958 FW RE+DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY Sbjct: 900 FWNREYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY 959 Query: 959 PPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYV 1018 PP+ PLTETAYDRLATIAQNNELGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGFDLYV Sbjct: 960 PPEVPLTETAYDRLATIAQNNELGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYV 1019 Query: 1019 RLVGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXXXXT 1078 RLVGEAVEAYRAAADGKTV TPEEPKDVRIDLPVDAHLPPDYIGSD Sbjct: 1020 RLVGEAVEAYRAAADGKTVATPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEGYRRLAAAP 1079 Query: 1079 SDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSA--PSSATVRLAPMD 1136 D+ V AVV+EL+DRYG LPEP +GIT+V A S++T+R++P+ Sbjct: 1080 DDAAVDAVVEELVDRYGPLPEPAELLVAVARLRLLARAAGITEVGAVSASASTLRISPLT 1139 Query: 1137 LPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDG-GVGAPRIRDVELVQMVANLVTAL 1192 LPDSAQ+RLKR+Y G +YRATTSTVQVPIPR G GVGAPRIRD ELV VA L+ L Sbjct: 1140 LPDSAQLRLKRLYSGANYRATTSTVQVPIPRAGQGVGAPRIRDRELVDFVAGLIKVL 1196 >tr|B1MKF3|B1MKF3_MYCA9 Tax_Id=561007 SubName: Full=Probable transcription-repair coupling factor (TrcF);[Mycobacterium abscessus] Length = 1216 Score = 1694 bits (4388), Expect = 0.0 Identities = 881/1213 (72%), Positives = 989/1213 (81%), Gaps = 26/1213 (2%) Query: 12 PIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQ--QGPLLVVTATG 69 P+AG++ AL P F ++A A L L P AR+FV + +A P+LVVTAT Sbjct: 7 PLAGVIRTALRDPAFD-VLAPAIAAKTGLDLTAPTCARAFVVTGMADASDAPVLVVTATT 65 Query: 70 READDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLGPP 129 REA D+TAELR V+G+AV L PSWETLPHERLSPGVDTVGA AHPED+R+G P Sbjct: 66 REAQDLTAELRDVYGDAVTLLPSWETLPHERLSPGVDTVGARLQVLHRLAHPEDSRMGVP 125 Query: 130 LRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFA 189 LRVV+T VRSLLQPM+P+L EPV L+VG E+ FD VIARLVELAYTRVDMV RGEFA Sbjct: 126 LRVVITTVRSLLQPMSPELFDLEPVELAVGAELEFDGVIARLVELAYTRVDMVAGRGEFA 185 Query: 190 VRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTE 249 VRGGILD+F+PTA+HPVRVEFWGDE++EMR FSVADQRSIPE++V +++A+ CRELLLT+ Sbjct: 186 VRGGILDVFSPTADHPVRVEFWGDEVSEMRYFSVADQRSIPELQVDSVLAMPCRELLLTD 245 Query: 250 DVXXXXXXXXXQHPASENTVTGS---------VIDMLAKLAEGIPTDGMEALLPVLRPDD 300 V AS V+GS V +MLAKLA+GI DGME+LLPVL Sbjct: 246 QVRARAAEL-----ASAAGVSGSEEGHRLGAGVGEMLAKLADGICVDGMESLLPVLHSGK 300 Query: 301 HALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGS 360 +L D L + PVLVCDPEKVRTRAADL +TGREFLEASWSVAA+G+DAP+DVEAL S Sbjct: 301 LTMLVDHLPDHAPVLVCDPEKVRTRAADLERTGREFLEASWSVAAIGSDAPIDVEALADS 360 Query: 361 GFAELEQVQTAASSSGHPWWTLSQLS--EESATELEVRAAPSARGHQKDIDDIFAMLRAH 418 GF EL+ V+ AA +G+PWW+LS L + A L VR +PSARGH++ +IFAMLRAH Sbjct: 361 GFRELDDVKHAAGEAGYPWWSLSPLGMDNDQAIGLAVRPSPSARGHKEGAAEIFAMLRAH 420 Query: 419 VSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPG 478 V TGG A +V G GT HR++E+LAE++ PA +LEPGA P GVVGVL+G L DGV++ G Sbjct: 421 VMTGGRAAVVAAGAGTTHRIIEQLAETETPATLLEPGAEPAEGVVGVLRGHLTDGVVLTG 480 Query: 479 ANLVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERT 538 AN+V+VTET+LTG+R A +GKRL AKRRN VDPLAL+AGDLVVHDQHGIGRFVEMVERT Sbjct: 481 ANIVIVTETDLTGSRVAATDGKRLPAKRRNQVDPLALSAGDLVVHDQHGIGRFVEMVERT 540 Query: 539 VGGARREYLVLEYASAKRG----GGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTN 594 VGGARREYLVLEYAS KRG G SD+LYVPMDSLDQLSRYVGG++P LSRLGGSDWTN Sbjct: 541 VGGARREYLVLEYASGKRGAAAGGQSDRLYVPMDSLDQLSRYVGGESPGLSRLGGSDWTN 600 Query: 595 TKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEV 654 TKTKARKAVREIAGELVALYA RQA+PGHAFAPDTPWQ EMEDAFGF ETVDQLTAITEV Sbjct: 601 TKTKARKAVREIAGELVALYAARQAAPGHAFAPDTPWQREMEDAFGFVETVDQLTAITEV 660 Query: 655 KGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDR 714 K DMEK +PMDRV+CGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT+R Sbjct: 661 KSDMEKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTNR 720 Query: 715 MAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQ 774 AGFPV V GLSRFTDP S+ V+EGMADGSVD+VIGTHRLLQTGVRWKDLGLV+VDEEQ Sbjct: 721 TAGFPVKVAGLSRFTDPLTSKLVVEGMADGSVDIVIGTHRLLQTGVRWKDLGLVIVDEEQ 780 Query: 775 RFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 834 RFGVEHKEHIK+LR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP Sbjct: 781 RFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGP 840 Query: 835 HDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLER 894 HDDKQVAAALRRELLRDGQAFYVHNRVS+ID AARIR LVPEARVVVAHGQMPE++LER Sbjct: 841 HDDKQVAAALRRELLRDGQAFYVHNRVSTIDKAAARIRDLVPEARVVVAHGQMPEEMLER 900 Query: 895 TVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYA 954 TVQGFW RE+DILVCTTI+ETGLDISNANTLIVERAD FGLSQLHQLRGRVGRSRERGYA Sbjct: 901 TVQGFWNREYDILVCTTIIETGLDISNANTLIVERADIFGLSQLHQLRGRVGRSRERGYA 960 Query: 955 YFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGF 1014 YFLY P+ PLTETAYDRL+TIAQNN+LGAGMAVA+KDLEIRGAGNVLGVEQSGHVAGVGF Sbjct: 961 YFLYSPEVPLTETAYDRLSTIAQNNDLGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGF 1020 Query: 1015 DLYVRLVGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXX 1074 DLYVRLVGEAVEAYRAAADGKTV T EEPK+VRIDLPVDAHLP DYIGSD Sbjct: 1021 DLYVRLVGEAVEAYRAAADGKTVLTAEEPKEVRIDLPVDAHLPTDYIGSDRLRLEAYRRL 1080 Query: 1075 XXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAP 1134 + + A V+EL DRYG LP P GITD+S + +R+ P Sbjct: 1081 AAAADAAQINAAVEELADRYGPLPLPVQRLVAVASLRLLCREMGITDLSVVGT-NIRIQP 1139 Query: 1135 MDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPR--DGGVGAPRIRDVELVQMVANLVTAL 1192 + L DSAQ+RLKR++P YRATTS VQVPIPR DGGVG+ RIRD+ELV M+A L+ AL Sbjct: 1140 LPLLDSAQLRLKRLHPAAQYRATTSVVQVPIPRAGDGGVGSDRIRDLELVHMIAELLVAL 1199 Query: 1193 AGKPQQDIGRTSL 1205 +G+P + T L Sbjct: 1200 SGRPAGSVDITPL 1212 >tr|Q0S4J8|Q0S4J8_RHOSR Tax_Id=101510 SubName: Full=Transcription repair coupling factor;[Rhodococcus sp.] Length = 1215 Score = 1597 bits (4134), Expect = 0.0 Identities = 819/1204 (68%), Positives = 953/1204 (79%), Gaps = 24/1204 (1%) Query: 8 SPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVTA 67 S DTP+AGL +AL Q + A R L +V P AR FVA+ALA++ LL+VTA Sbjct: 11 SSDTPLAGLAKIALGDAVIAQ-VTEALGR-HHLDIVAPGPARPFVAAALAERTHLLLVTA 68 Query: 68 TGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLG 127 TGREADD+TAELR + G+AVA FPSWETLPHERLSP DTVG A P+D G Sbjct: 69 TGREADDLTAELREMIGDAVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDRSYG 128 Query: 128 PPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGE 187 PL+V+VT VRSL+QPM P LG EPV+L VG E FD +I RLVE+AYTRVDMVG+RGE Sbjct: 129 APLQVIVTTVRSLVQPMAPGLGEIEPVTLRVGVEHDFDGLIQRLVEMAYTRVDMVGKRGE 188 Query: 188 FAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLL 247 FAVRGGILDLF+PTA+HPVRVEFWGDE+TE+R FSVADQRS+PE+++ ++A CRELLL Sbjct: 189 FAVRGGILDLFSPTADHPVRVEFWGDEVTELRAFSVADQRSLPELDIDAVIAPPCRELLL 248 Query: 248 TEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQ 307 TEDV A +N ++++ML K++ GIP +GMEALLPVLRP LLTD Sbjct: 249 TEDVRDRAAQL-----AVDNQADAALVEMLDKMSAGIPVEGMEALLPVLRPGQLQLLTDV 303 Query: 308 LAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGSG------ 361 L E VL+CDPEK+RTRA DL++TG+EFLEASW+ A++G AP+D L G G Sbjct: 304 LPESAHVLLCDPEKIRTRATDLVRTGQEFLEASWTAASIGGAAPLDTSVLRGDGIDLGAS 363 Query: 362 -FAELEQVQTAASSSGHPWWTLSQLSEESATELE--VRAAPSARGHQKDIDDIFAMLRAH 418 + L QV+ +A + G PWWTLS L+ + ELE V AP RG + ++F LRAH Sbjct: 364 AYRSLSQVRESAEARGLPWWTLSPLASGNGEELELAVTPAPQVRGSDDLLSELFVSLRAH 423 Query: 419 VSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPG 478 V+TGG AV+V G GTAHR++ERL E+++PAA L PG P G VGVL+G L DG++ PG Sbjct: 424 VTTGGRAVIVVAGAGTAHRVLERLREAEVPAAELAPGTEPPRGQVGVLRGSLHDGLVFPG 483 Query: 479 ----ANLVVVTETNLTGNRATAV-EGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVE 533 A LV+VTE +LTGNR AV +GKRL AKRRN VDPLALTAGD+VVHDQHGIGRFVE Sbjct: 484 DDSTAGLVIVTEADLTGNRVAAVGDGKRLPAKRRNQVDPLALTAGDMVVHDQHGIGRFVE 543 Query: 534 MVERTVGGARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWT 593 MVERT+GGARREYLV+EYA++KRG D+L+VPM+SLDQLSRYVGG+ PALS+LGGSDW Sbjct: 544 MVERTIGGARREYLVIEYAASKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGSDWA 603 Query: 594 NTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITE 653 NTK KARKAVREIAGELV LYA RQA+PGHAF PDTPWQ EMEDAF FTET DQLT I+E Sbjct: 604 NTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETHDQLTVISE 663 Query: 654 VKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTD 713 VK DMEK++PMDRV+ GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA QHLQTFT+ Sbjct: 664 VKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFTE 723 Query: 714 RMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEE 773 RMA FPVTV+GLSRFTD +S+ I GMADG +DVV+GTHRLLQTG+RWKDLGLV+VDEE Sbjct: 724 RMAAFPVTVRGLSRFTDAGDSKETIAGMADGEIDVVVGTHRLLQTGIRWKDLGLVIVDEE 783 Query: 774 QRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVG 833 QRFGVEHKEHIK+LR+HVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+P+LTYVG Sbjct: 784 QRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYVG 843 Query: 834 PHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLE 893 + DKQVAAA+RRELLRDGQ FYVHNRVSSID +A RIR+LVPEARVVVAHGQM ED LE Sbjct: 844 AYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKSAQRIRELVPEARVVVAHGQMNEDTLE 903 Query: 894 RTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGY 953 RTVQGFW+R++D+LVCTTI+ETGLDISNANTLIVERAD+ GLSQLHQLRGRVGRSRERGY Sbjct: 904 RTVQGFWERDYDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRERGY 963 Query: 954 AYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVG 1013 AYFLYPP+ PLTETAYDRLATI+QN++LGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVG Sbjct: 964 AYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVG 1023 Query: 1014 FDLYVRLVGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXX 1073 FDLYVRLVGEAVEA+RAAADG+ +TT + PK+VRIDLPVDAH+PPDY+ SD Sbjct: 1024 FDLYVRLVGEAVEAFRAAADGRPITTEDAPKEVRIDLPVDAHIPPDYVTSDRLRLEGYRK 1083 Query: 1074 XXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLA 1133 T G+ AVVDEL DRYG LPE G+ ++ A +++A Sbjct: 1084 LAAATELDGITAVVDELADRYGPLPEEVRRLVSVAKLRLLAREYGLEEI-AVVGTQLKIA 1142 Query: 1134 PMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPR--DGGVGAPRIRDVELVQMVANLVTA 1191 PM LPDS Q+RLKR+YP YRATT VQ+P+PR GG+GA R+RDVEL+Q +A+ V A Sbjct: 1143 PMALPDSKQLRLKRIYPSAQYRATTGMVQLPLPRAGSGGIGAERVRDVELLQYIADFVVA 1202 Query: 1192 LAGK 1195 L GK Sbjct: 1203 LDGK 1206 >tr|C1AY76|C1AY76_RHOOB Tax_Id=632772 (mfd)SubName: Full=Transcription-repair coupling factor;[Rhodococcus opacus] Length = 1215 Score = 1597 bits (4134), Expect = 0.0 Identities = 818/1204 (67%), Positives = 956/1204 (79%), Gaps = 24/1204 (1%) Query: 8 SPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVTA 67 S DTP+AGL +AL Q+ R L +V PA AR FVA+ALA++ LL+VTA Sbjct: 11 SSDTPLAGLAKIALGDAVVAQVTEALGRR--HLDIVAPAPARPFVAAALAERTHLLLVTA 68 Query: 68 TGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLG 127 TGREADD+TAEL+ + G+AVA FPSWETLPHERLSP DTVG A P+D G Sbjct: 69 TGREADDLTAELQEMIGDAVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDRSYG 128 Query: 128 PPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGE 187 PL+VVVT VRSL+QPM P LG EPV+L VG E FD +I RLVE+AYTRVDMVG+RGE Sbjct: 129 APLQVVVTTVRSLVQPMAPGLGEIEPVTLRVGVEHDFDGLIQRLVEMAYTRVDMVGKRGE 188 Query: 188 FAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLL 247 FAVRGGILDLF+PTA+HPVRVEFWGDE+TE+R FSVADQRS+ E+++ ++A CRELLL Sbjct: 189 FAVRGGILDLFSPTADHPVRVEFWGDEVTELRAFSVADQRSLAELDIDAVIAPPCRELLL 248 Query: 248 TEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQ 307 TEDV A +N ++++ML K++ GIP +GMEALLPVLRP LLTD Sbjct: 249 TEDVRDRAAQL-----AVDNQADAALVEMLDKMSAGIPVEGMEALLPVLRPGQLQLLTDV 303 Query: 308 LAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGSG------ 361 L E VL+CDPEK+RTRA DL++TG+EFLEASW+ A++G AP+D L G G Sbjct: 304 LPESAHVLLCDPEKIRTRATDLVRTGQEFLEASWTAASIGGAAPLDTSVLKGDGIDLGAS 363 Query: 362 -FAELEQVQTAASSSGHPWWTLSQLSEESATELE--VRAAPSARGHQKDIDDIFAMLRAH 418 + L QV+ +A ++G PWWTLS L+ S ELE + AP RG + + ++F LRAH Sbjct: 364 AYRTLSQVRESAETAGLPWWTLSPLASGSGEELELAITPAPQVRGSDELLSELFVSLRAH 423 Query: 419 VSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPG 478 VSTGG AV+V G GTAHR++ERL E+++PAA L PG+ P G VGVL+G L DG++ PG Sbjct: 424 VSTGGRAVIVVAGAGTAHRVLERLREAEVPAAELTPGSEPARGQVGVLRGSLHDGLVFPG 483 Query: 479 AN----LVVVTETNLTGNRATAV-EGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVE 533 + LVVVTE++LTGNR AV +G+RL AKRRN VDPLALTAGD+VVHDQHGIGRFVE Sbjct: 484 GDTTPGLVVVTESDLTGNRVAAVGDGRRLPAKRRNQVDPLALTAGDMVVHDQHGIGRFVE 543 Query: 534 MVERTVGGARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWT 593 MVERT+GGARREYLV+EYA++KRG D+L+VPM+SLDQLSRYVGG+ PALS+LGGSDW Sbjct: 544 MVERTIGGARREYLVIEYAASKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGSDWA 603 Query: 594 NTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITE 653 NTK KARKAVREIAGELV LYA RQA+PGHAF PDTPWQ EMEDAF FTET DQLT I+E Sbjct: 604 NTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETHDQLTVISE 663 Query: 654 VKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTD 713 VK DMEK++PMDRV+ GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA QHLQTFT+ Sbjct: 664 VKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFTE 723 Query: 714 RMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEE 773 RMA FPV V+GLSRFTD ES+ ++ GMADG +DVV+GTHRLLQT VRWKDLGLV+VDEE Sbjct: 724 RMAAFPVKVRGLSRFTDAGESKEIVAGMADGEIDVVVGTHRLLQTAVRWKDLGLVIVDEE 783 Query: 774 QRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVG 833 QRFGVEHKEHIK+LR+HVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+P+LTYVG Sbjct: 784 QRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYVG 843 Query: 834 PHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLE 893 + DKQVAAA+RRELLRDGQ FYVHNRVSSID A RIR+LVPEARVVVAHGQM ED LE Sbjct: 844 AYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAQRIRELVPEARVVVAHGQMNEDTLE 903 Query: 894 RTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGY 953 RTVQGFW+R++D+LVCTTI+ETGLDISNANTLIVERAD+ GLSQLHQLRGRVGRSRERGY Sbjct: 904 RTVQGFWERDYDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRERGY 963 Query: 954 AYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVG 1013 AYFLYPP+ PLTETAYDRLATI+QN++LGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVG Sbjct: 964 AYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVG 1023 Query: 1014 FDLYVRLVGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXX 1073 FDLYVRLVGEAVEA+RAAADGK +TT + PK+VRIDLPVDAH+PPDY+ SD Sbjct: 1024 FDLYVRLVGEAVEAFRAAADGKPITTDDAPKEVRIDLPVDAHIPPDYVTSDRLRLEGYRK 1083 Query: 1074 XXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLA 1133 T G+ AVVDEL+DRYG LPE G+ ++ A ++++ Sbjct: 1084 LAAATELDGITAVVDELVDRYGPLPEEVRRLVSVAKLRLLAREYGLEEI-AVVGTQLKIS 1142 Query: 1134 PMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPR--DGGVGAPRIRDVELVQMVANLVTA 1191 PM LPDS Q+RLKR+YP YRATT VQ+P+PR GG+GA R+RDVEL+Q +A+LV A Sbjct: 1143 PMALPDSKQLRLKRIYPSAQYRATTGMVQLPLPRAGSGGIGAERVRDVELLQYIADLVLA 1202 Query: 1192 LAGK 1195 L GK Sbjct: 1203 LDGK 1206 >tr|Q5YQ14|Q5YQ14_NOCFA Tax_Id=37329 (mfd)SubName: Full=Putative transcription-repair coupling factor;[Nocardia farcinica] Length = 1205 Score = 1587 bits (4108), Expect = 0.0 Identities = 825/1214 (67%), Positives = 958/1214 (78%), Gaps = 22/1214 (1%) Query: 7 ASPDTPIAGLVDLA---LTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLL 63 +S P+AGL +A T L+ + + +V PA+ARSFVA+ +A + P++ Sbjct: 2 SSSRPPLAGLAAVAGADAALRTVADLVGTTT-----VDMVAPAAARSFVAATVAGKRPVV 56 Query: 64 VVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPED 123 VVTATGREADD+T EL + G++VA FPSWETLPHERLSP DTVG AHP+D Sbjct: 57 VVTATGREADDLTVELTEILGDSVAQFPSWETLPHERLSPSADTVGRRLAVLRRLAHPDD 116 Query: 124 TRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVG 183 PLRVVVT VRSL+QPM LG EP+ L G E+ FD+++ RLVE AYTRVDMVG Sbjct: 117 PVFPVPLRVVVTTVRSLMQPMAAGLGDIEPIVLREGAELDFDDLLTRLVEFAYTRVDMVG 176 Query: 184 RRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACR 243 +RGEFAVRGGILDLF PTA+HPVRVEFWGDE+T++R F+VADQRS+PEIE+ T+VA CR Sbjct: 177 KRGEFAVRGGILDLFPPTADHPVRVEFWGDEVTQVRAFAVADQRSLPEIEIDTVVATPCR 236 Query: 244 ELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHAL 303 ELLLT V A+ N ++++ML KLAEGIP +GMEALLPVL+P + L Sbjct: 237 ELLLTAPVRERAAQV-----AAANAADAALVEMLDKLAEGIPVEGMEALLPVLQPGELTL 291 Query: 304 LTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEAL--GGSG 361 LT+QLA GT VL+CDPEK+RTRAADL++TG EFLEASW+ A+ G DAP+ L S Sbjct: 292 LTEQLAAGTHVLLCDPEKIRTRAADLVRTGAEFLEASWTAASFGADAPLGGNGLDLAASS 351 Query: 362 FAELEQVQTAASSSGHPWWTLSQLSEESATE--LEVRAAPSARGHQKDIDDIFAMLRAHV 419 + L Q++ A G WWTLS L+ E L + AP+ARG + + IFA LRAHV Sbjct: 352 YRALPQIREDADRHGLAWWTLSPLASGDPAEVVLPLHQAPTARGSDELVATIFASLRAHV 411 Query: 420 STGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGA 479 +TGG AV+V G GTA R++ERLA++++PA L GA P GVVGVL G L DGV+ A Sbjct: 412 TTGGRAVVVVAGHGTAQRVLERLADAEVPATALTAGAEPAPGVVGVLCGTLHDGVVFADA 471 Query: 480 NLVVVTETNLTGNRATAV-EGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERT 538 LVVV E++LTGNR TA EGKRL AKRRN VDPLAL+AGD+VVHDQHGIGRFVEM+ERT Sbjct: 472 ALVVVAESDLTGNRVTAPGEGKRLPAKRRNQVDPLALSAGDMVVHDQHGIGRFVEMIERT 531 Query: 539 VGGARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTK 598 VGGARREYLV+EYA +KRG D+L+VPM+SLDQLSRYVGG+ P+LS+LGGSDW NTK K Sbjct: 532 VGGARREYLVIEYAPSKRGQPGDRLFVPMESLDQLSRYVGGEMPSLSKLGGSDWANTKRK 591 Query: 599 ARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDM 658 ARKAVREIAGELV LYA RQA+PGHAF PDTPWQ EMEDAF FTETVDQ+TAI EVK DM Sbjct: 592 ARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETVDQMTAIAEVKADM 651 Query: 659 EKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGF 718 EK +PMDRV+CGDVGYGKTEIAVRAAFKAVQDGKQV VLVPTTLLA QHLQTFT+R+AGF Sbjct: 652 EKPVPMDRVVCGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHLQTFTERVAGF 711 Query: 719 PVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGV 778 PVTVKGLSRFTDPAESR V+EGMADGSVD+V+GTHRLLQTGVRWKDLGLV+VDEEQRFGV Sbjct: 712 PVTVKGLSRFTDPAESRAVLEGMADGSVDIVVGTHRLLQTGVRWKDLGLVIVDEEQRFGV 771 Query: 779 EHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK 838 EHKEHIK+LR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEER+PVLTYVG ++DK Sbjct: 772 EHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPVLTYVGAYNDK 831 Query: 839 QVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQG 898 QV AA+RRELLRDGQ FYVHNRVSSID A RIR LVPEARVVVAHGQM ED LERTVQG Sbjct: 832 QVTAAIRRELLRDGQVFYVHNRVSSIDKAAKRIRDLVPEARVVVAHGQMNEDTLERTVQG 891 Query: 899 FWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY 958 FWQRE+D+LVCTTI+ETGLDISNANTLIVERADT GLSQLHQLRGRVGRSRERGYAYFLY Sbjct: 892 FWQREYDVLVCTTIIETGLDISNANTLIVERADTLGLSQLHQLRGRVGRSRERGYAYFLY 951 Query: 959 PPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYV 1018 PP+ PLTETAYDRLATIAQN++LGAGMAVA+KDLEIRGAGNVLG EQSGHVAGVGFDLYV Sbjct: 952 PPEKPLTETAYDRLATIAQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYV 1011 Query: 1019 RLVGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXXXXT 1078 RLVGEAVEAYRAAADGK +TT EE K+VRIDLPVDAH+PPDY+ SD Sbjct: 1012 RLVGEAVEAYRAAADGKPITT-EEVKEVRIDLPVDAHIPPDYVASDRLRLEAYRKLAAAQ 1070 Query: 1079 SDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAP-MDL 1137 DS +A+VV+EL+DRYG LP GIT++ A + T++++P ++L Sbjct: 1071 DDSALASVVEELVDRYGPLPVEVGRLVSVAKLRLLAREYGITEI-AVTGTTLKISPLLNL 1129 Query: 1138 PDSAQVRLKRMYPGGHYRATTSTVQVPIPR-DGGVGAPRIRDVELVQMVANLVTALAGKP 1196 PDS Q+RLKR+YP Y+A + VQ+P+PR + VGA R+RDV+L+Q VA+L+ AL GK Sbjct: 1130 PDSKQLRLKRLYPSAGYKAASGVVQLPLPRVEDSVGAERVRDVQLLQFVADLLLALDGKA 1189 Query: 1197 QQDIGRTSLSEDDA 1210 Q + T +E A Sbjct: 1190 QGAVDLTVATEATA 1203 >tr|C1A324|C1A324_RHOE4 Tax_Id=234621 (mfd)SubName: Full=Transcription-repair coupling factor;[Rhodococcus erythropolis] Length = 1229 Score = 1571 bits (4068), Expect = 0.0 Identities = 794/1203 (66%), Positives = 951/1203 (79%), Gaps = 22/1203 (1%) Query: 7 ASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVT 66 +S T +AGL ++AL F +I S L +V P AR F+A+ALA + P+L+VT Sbjct: 26 SSAQTALAGLAEVALADAAFTPVID--SIGAPALDIVAPKPARPFIAAALAARTPVLLVT 83 Query: 67 ATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRL 126 ATGREADD+T+EL + G VA FPSWETLPHERLSP DTVG A P+D Sbjct: 84 ATGREADDLTSELTEMLGGGVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDASY 143 Query: 127 GPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRG 186 G PLRV+VT VRSL+QPM P LG EP++L VG EI FD V+ RLVE+AY+RVDMVG+RG Sbjct: 144 GSPLRVIVTTVRSLVQPMAPGLGEIEPITLRVGTEIDFDSVLVRLVEMAYSRVDMVGKRG 203 Query: 187 EFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELL 246 EFAVRGGILDLF+PTA+HPVR+EFWGDE++E+R FSVADQRS+P+++V +++A CREL+ Sbjct: 204 EFAVRGGILDLFSPTADHPVRIEFWGDEVSELRYFSVADQRSLPDVDVDSVIAPPCRELI 263 Query: 247 LTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTD 306 LT DV A+EN S+++ML K++ GIP +GMEALLPVL+P + LL+D Sbjct: 264 LTADVRDRAAAL-----AAENQADASLVEMLDKISAGIPVEGMEALLPVLKPGELQLLSD 318 Query: 307 QLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGSG----- 361 L G +L+CDPEKVRTRA DL++TG+EFLEASW+ A++G AP+D L G G Sbjct: 319 VLPVGAHILLCDPEKVRTRATDLVRTGQEFLEASWTAASIGGAAPLDTSILNGGGVDLGA 378 Query: 362 --FAELEQVQTAASSSGHPWWTLSQLSEESATELE--VRAAPSARGHQKDIDDIFAMLRA 417 + L V+ +A ++G PWWT+S L+ + ELE V+AAP RG + ++F LRA Sbjct: 379 SAYRSLRHVRESAEAAGRPWWTVSPLASGNGEELEIPVQAAPQVRGSDDLLAELFVSLRA 438 Query: 418 HVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVP 477 HVSTGG A +V G GTA R+VERL E+++PA MLE GA P G V VL+G L DG+++ Sbjct: 439 HVSTGGRAAIVVAGAGTASRVVERLGEAEVPAKMLEGGATPARGQVAVLRGSLHDGLVLA 498 Query: 478 GAN----LVVVTETNLTGNRATAV-EGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFV 532 G + +V+VTE++LTGNR AV +GKRL AKRRN VDPLAL+AGD+VVHDQHGIGRFV Sbjct: 499 GDDSTPGMVIVTESDLTGNRVAAVGDGKRLPAKRRNQVDPLALSAGDMVVHDQHGIGRFV 558 Query: 533 EMVERTVGGARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDW 592 EMVERT+GGARREYLV+EYA +KRG D+L+VPM+SLDQLSRYVGG+ PALS+LGGSDW Sbjct: 559 EMVERTIGGARREYLVIEYAPSKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGSDW 618 Query: 593 TNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAIT 652 NTK KARKAVREIAGELV LYA RQA+PGHAF PDTPWQ E+EDAF FTET+DQLT I+ Sbjct: 619 ANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKELEDAFAFTETIDQLTVIS 678 Query: 653 EVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT 712 EVK DMEK +PMDRV+ GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA QHLQTFT Sbjct: 679 EVKADMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFT 738 Query: 713 DRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDE 772 +RMA FPV V+GLSRFTD +S+ +I GMA+G +D+V+GTHRLLQTG+RWKDLGLV+VDE Sbjct: 739 ERMASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDIVVGTHRLLQTGIRWKDLGLVIVDE 798 Query: 773 EQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYV 832 EQRFGVEHKEHIK+LR+HVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+P+LTYV Sbjct: 799 EQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYV 858 Query: 833 GPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLL 892 G + DKQVAAA+RRELLRDGQ FYVHNRVSSID A +IR+LVPEARVVVAHGQM ED L Sbjct: 859 GAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKKIRELVPEARVVVAHGQMNEDTL 918 Query: 893 ERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERG 952 E+TVQGFW+R+FD+LVCTTI+ETGLDISNANTLIVERAD+ GLSQLHQLRGRVGRSRERG Sbjct: 919 EKTVQGFWERDFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRERG 978 Query: 953 YAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGV 1012 YAYFLYP + PLTETAYDRLATI+QN++LGAGMAVA+KDLEIRGAGNVLG EQSGHVAGV Sbjct: 979 YAYFLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGV 1038 Query: 1013 GFDLYVRLVGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXX 1072 GFDLYVRLVGEAVEA+RAAADGK +T E K+VRIDLPVDAH+PPDY+ SD Sbjct: 1039 GFDLYVRLVGEAVEAFRAAADGKPITMDEGTKEVRIDLPVDAHIPPDYVTSDRLRLEGYR 1098 Query: 1073 XXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRL 1132 T G+AAVV+EL+DRYG LPE + +V A + +++ Sbjct: 1099 KLAAATDSDGIAAVVEELVDRYGPLPEEVRRLISVAKLRLLCREYQLEEV-AVTGTQLKI 1157 Query: 1133 APMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVTAL 1192 +PM LPDS Q+RLKR+YP YRATT VQ+P+PR GGVG+ R+RDVEL+Q +A+ + A+ Sbjct: 1158 SPMSLPDSKQIRLKRIYPSAQYRATTGLVQLPLPRTGGVGSDRLRDVELLQYIADFILAI 1217 Query: 1193 AGK 1195 G+ Sbjct: 1218 DGR 1220 >tr|C3JX01|C3JX01_RHOER Tax_Id=596309 (mfd)SubName: Full=Transcription-repair coupling factor; EC=3.6.1.-;[Rhodococcus erythropolis SK121] Length = 1208 Score = 1570 bits (4065), Expect = 0.0 Identities = 792/1203 (65%), Positives = 949/1203 (78%), Gaps = 22/1203 (1%) Query: 7 ASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVT 66 +S T +AGL ++AL F +I L +V P AR F+A+ALA + P+L+VT Sbjct: 5 SSAQTALAGLAEVALADAAFTPVIESIGSAA--LDIVAPKPARPFIAAALAARTPVLLVT 62 Query: 67 ATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRL 126 ATGREADD+T+EL + G VA FPSWETLPHERLSP DTVG A P+D Sbjct: 63 ATGREADDLTSELTEMLGGGVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDASY 122 Query: 127 GPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRG 186 G PLRV+VT VRSL+QPM P LG EP++L VG EI FD V+ RLVE+AY+RVDMVG+RG Sbjct: 123 GSPLRVIVTTVRSLVQPMAPGLGEIEPITLRVGTEIDFDSVLVRLVEMAYSRVDMVGKRG 182 Query: 187 EFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELL 246 EFAVRGGILDLF+PTA+HPVR+EFWGDE++E+R FSVADQRS+ +++V +++A CREL+ Sbjct: 183 EFAVRGGILDLFSPTADHPVRIEFWGDEVSELRYFSVADQRSLADVDVDSVIAPPCRELI 242 Query: 247 LTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTD 306 LT DV A+EN S+++ML K++ GIP +GMEALLPVL+P + LL+D Sbjct: 243 LTADVRDRAAAL-----AAENQADASLVEMLDKISAGIPVEGMEALLPVLKPGELQLLSD 297 Query: 307 QLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGSG----- 361 L EG +L+CDPEKVRTRA DL++TG+EFLEASW+ A++G AP+D L G G Sbjct: 298 VLPEGAHILLCDPEKVRTRATDLVRTGQEFLEASWTAASIGGAAPLDTSILNGGGVDLGA 357 Query: 362 --FAELEQVQTAASSSGHPWWTLSQLSEESATELE--VRAAPSARGHQKDIDDIFAMLRA 417 + L V+ +A ++G PWWT+S L+ + ELE V AAP RG + ++F LRA Sbjct: 358 SAYRSLRHVRESAEAAGRPWWTVSPLASGNGEELELPVHAAPQVRGSDDLLAELFVSLRA 417 Query: 418 HVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVP 477 HVSTGG A +V G GTA R+VERL E+++PA ML+ GA P G V VL+G L DG+++ Sbjct: 418 HVSTGGRAAIVVAGAGTASRVVERLGEAEVPAKMLDAGATPARGQVAVLRGSLHDGLVLA 477 Query: 478 GAN----LVVVTETNLTGNRATAV-EGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFV 532 G + +V+VTE++LTGNR AV +GKRL AKRRN VDPLAL+AGD+VVHDQHGIGRFV Sbjct: 478 GDDSTPGMVIVTESDLTGNRVAAVGDGKRLPAKRRNQVDPLALSAGDMVVHDQHGIGRFV 537 Query: 533 EMVERTVGGARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDW 592 EMVERT+GGARREYLV+EYA +KRG D+L+VPM+SLDQLSRYVGG+ PALS+LGGSDW Sbjct: 538 EMVERTIGGARREYLVIEYAPSKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGSDW 597 Query: 593 TNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAIT 652 NTK KARKAVREIAGELV LYA RQA+PGHAF PDTPWQ E+EDAF FTET+DQLT I+ Sbjct: 598 ANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKELEDAFAFTETIDQLTVIS 657 Query: 653 EVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFT 712 EVK DMEK +PMDRV+ GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA QHLQTFT Sbjct: 658 EVKADMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFT 717 Query: 713 DRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDE 772 +RMA FPV V+GLSRFTD +S+ +I GMA+G +D+V+GTHRLLQTG+RWKDLGLV+VDE Sbjct: 718 ERMASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDIVVGTHRLLQTGIRWKDLGLVIVDE 777 Query: 773 EQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYV 832 EQRFGVEHKEHIK+LR+HVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+P+LTYV Sbjct: 778 EQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYV 837 Query: 833 GPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLL 892 G + DKQVAAA+RRELLRDGQ FYVHNRVSSID A +IR+LVPEARVVVAHGQM ED L Sbjct: 838 GAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKKIRELVPEARVVVAHGQMNEDTL 897 Query: 893 ERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERG 952 E+TVQGFW+R+FD+LVCTTI+ETGLDISNANTLIVERAD+ GLSQLHQLRGRVGRSRERG Sbjct: 898 EKTVQGFWERDFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRERG 957 Query: 953 YAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGV 1012 YAYFLYP + PLTETAYDRLATI+QN++LGAGMAVA+KDLEIRGAGNVLG EQSGHVAGV Sbjct: 958 YAYFLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGV 1017 Query: 1013 GFDLYVRLVGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXX 1072 GFDLYVRLVGEAVEA+RAAADGK +T E K+VRIDLPVDAH+PPDY+ SD Sbjct: 1018 GFDLYVRLVGEAVEAFRAAADGKPITMDEGTKEVRIDLPVDAHIPPDYVTSDRLRLEGYR 1077 Query: 1073 XXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRL 1132 T G+AAVV+EL+DRYG LPE + +V A + +++ Sbjct: 1078 KLAAATDSDGIAAVVEELVDRYGPLPEEVRRLISVAKLRLLCREYQLEEV-AVTGTQLKI 1136 Query: 1133 APMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVTAL 1192 +PM LPDS Q+RLKR+YP YRATT VQ+P+PR GGVG+ R+RDVEL+Q +A+ + A+ Sbjct: 1137 SPMSLPDSKQIRLKRIYPSAQYRATTGLVQLPLPRTGGVGSDRLRDVELLQYIADFILAI 1196 Query: 1193 AGK 1195 G+ Sbjct: 1197 DGR 1199 >tr|D0L750|D0L750_GORB4 Tax_Id=526226 SubName: Full=Transcription-repair coupling factor;[Gordonia bronchialis] Length = 1195 Score = 1440 bits (3728), Expect = 0.0 Identities = 766/1194 (64%), Positives = 894/1194 (74%), Gaps = 27/1194 (2%) Query: 13 IAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG--PLLVVTATGR 70 + GL +LA + AR + +LT P +AR FV + LA+ PLLVV+A GR Sbjct: 7 LVGLSELACADTAISGIRARRDEVHVDLT--APDAARPFVVACLAKDADAPLLVVSANGR 64 Query: 71 EADDVTAELRGVFGE--AVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLGP 128 EADD+TAEL + E AVA FPSWETLPHERLSP DTVGA A+P D+ Sbjct: 65 EADDLTAELAELLDEPDAVAQFPSWETLPHERLSPSADTVGARLAVLHRLANPGDS---- 120 Query: 129 PLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEF 188 PLRVVVT VRSL+QPM P LG +SL+ G EI FD ++ LVE+AY RVDMVGRRGEF Sbjct: 121 PLRVVVTTVRSLVQPMAPGLGDVATISLAEGFEIDFDGLLTDLVEMAYERVDMVGRRGEF 180 Query: 189 AVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLT 248 AVRGGILD+F TA++PVRVEFWGDEITEMR FSVADQRS PE+E + + CRELLLT Sbjct: 181 AVRGGILDVFPTTADYPVRVEFWGDEITEMRAFSVADQRSQPEVEATRVDIHPCRELLLT 240 Query: 249 EDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQL 308 +++ Q ++ +ML KLAEGIP +GMEAL+P L LLT+ + Sbjct: 241 DEIRTRAAELASQFEGDP-----TLAEMLTKLAEGIPVNGMEALIPALVDGRMQLLTEVV 295 Query: 309 AEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVD---VEALG----GSG 361 GT VL+ DPEKVRTRAADL KTG EFLEASW+ AAMG P+D +ALG S Sbjct: 296 PAGTRVLILDPEKVRTRAADLSKTGAEFLEASWTAAAMGAQGPLDGRSSQALGVDLQASA 355 Query: 362 FAELEQVQTAASSSGHPWWTLSQLS--EESATELEVRAAPSARGHQKDIDDIFAMLRAHV 419 + L++V+ ++G WWT+S L+ ++ L++ P+ RG +I +FA LRAHV Sbjct: 356 YRPLDEVRETTLAAGRSWWTISPLATGDDHEVVLDLAPGPAPRGDDNEIVAVFAQLRAHV 415 Query: 420 STGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGA 479 G A +V G GTA R+ ERLA++++P + EPG P G V V G LR G++ P A Sbjct: 416 RAGQTAAIVVAGKGTAQRVGERLADAEVPHVIAEPGHRPAPGEVSVFGGTLRHGLVCPDA 475 Query: 480 NLVVVTETNLTGNRATAV-EGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERT 538 LV+VTE +LTG R V +G++L AKRRN VDPLALTAGDLVVHDQHGIG+FVEM+ERT Sbjct: 476 GLVIVTEADLTGTRVANVRDGRKLPAKRRNQVDPLALTAGDLVVHDQHGIGKFVEMIERT 535 Query: 539 VGGARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTK 598 V GARREYLVLEYA +KRG D+LYVPMD+LDQLSRYVGG+ P+LS+LGGSDW NTK K Sbjct: 536 VSGARREYLVLEYAPSKRGQPGDRLYVPMDALDQLSRYVGGEQPSLSKLGGSDWQNTKRK 595 Query: 599 ARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDM 658 ARKAVREIAGELV LYA R A+PGHAF PDTPWQ EMEDAF FTETVDQ+T I EVK DM Sbjct: 596 ARKAVREIAGELVQLYAARHAAPGHAFGPDTPWQQEMEDAFDFTETVDQMTVIGEVKADM 655 Query: 659 EKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGF 718 E+ +PMDRVI GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTT+LA QHLQTF++RM+GF Sbjct: 656 ERPVPMDRVIVGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTILAQQHLQTFSERMSGF 715 Query: 719 PVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGV 778 PV V+GLSRFTD ESR +I+ MA G VD+VIGTHRLLQTGV WKDLGLV+VDEEQRFGV Sbjct: 716 PVRVRGLSRFTDARESREIIDAMATGEVDIVIGTHRLLQTGVTWKDLGLVIVDEEQRFGV 775 Query: 779 EHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK 838 EHKEHIKSLR+HVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+PVLTYVG + K Sbjct: 776 EHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYAPK 835 Query: 839 QVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQG 898 QVAAA+RRELLRDGQ FYVHNRVS+ID TA I +VPEARVVVAHGQM ED LE+TV G Sbjct: 836 QVAAAIRRELLRDGQVFYVHNRVSTIDKTARDIAAMVPEARVVVAHGQMNEDQLEKTVSG 895 Query: 899 FWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY 958 FW REFD+LVCTTI+ETGLDISNANTLIV+RA+ GLSQLHQLRGRVGRSRERGYAY LY Sbjct: 896 FWNREFDVLVCTTIIETGLDISNANTLIVDRAENLGLSQLHQLRGRVGRSRERGYAYLLY 955 Query: 959 PPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYV 1018 P+ PLTETAYDRLATIAQNNELGAGMAVALKDLE+RGAGNVLG EQSGHVAGVGFDLYV Sbjct: 956 SPERPLTETAYDRLATIAQNNELGAGMAVALKDLELRGAGNVLGAEQSGHVAGVGFDLYV 1015 Query: 1019 RLVGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXXXXT 1078 RLVGEAVEAYRAAADG+ VT+ E ++VRIDLPVDAH+P +Y+ SD Sbjct: 1016 RLVGEAVEAYRAAADGQPVTS-RETEEVRIDLPVDAHIPVEYVDSDRLRLEAYRKLASAI 1074 Query: 1079 SDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAPMDLP 1138 D+ V V+ EL DRYG P GIT++ + ++++P+ L Sbjct: 1075 DDAAVDGVIAELTDRYGEPPVETTRLAAIARLRLRCRERGITEIGLAGTG-LKISPLPLL 1133 Query: 1139 DSAQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVTAL 1192 DS QVRLKR+Y +YRATTS V +PIPR GGVG+ R+RD EL+ + +T L Sbjct: 1134 DSEQVRLKRLYSAANYRATTSVVTLPIPRTGGVGSARLRDDELIVYLTTFLTQL 1187 >tr|C6WJJ6|C6WJJ6_ACTMD Tax_Id=446462 SubName: Full=Transcription-repair coupling factor;[Actinosynnema mirum] Length = 1187 Score = 1401 bits (3627), Expect = 0.0 Identities = 741/1206 (61%), Positives = 893/1206 (74%), Gaps = 36/1206 (2%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 M+ PG P++GL+ L + L A A+ P EL L GP +AR VA+AL++ Sbjct: 1 MSQPG------PLSGLLTAVLPDKALRAL-ADAAGSP-ELELEGPPAARPLVAAALSRTS 52 Query: 61 PLLVVTATGREADDVTAELRGVFG-EAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXA 119 P+L VTATGREA+++ + LR + G EAVA+FPSWETLPHERLSP DTVGA A Sbjct: 53 PVLAVTATGREAEELASVLRDLVGPEAVAIFPSWETLPHERLSPRADTVGARLQVLRRLA 112 Query: 120 HPEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRV 179 HP D PLR VV VRSL+QPM P LG EP+ L+ G E FD ++ RL ELAYTRV Sbjct: 113 HPGDR----PLRAVVATVRSLIQPMAPGLGDLEPLDLATGSEHDFDALLHRLAELAYTRV 168 Query: 180 DMVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVA 239 DMV +RGEFAVRGGILD+F PTAEHP+RVEFWGDE+TE+R FSVADQRS+P+ +V A Sbjct: 169 DMVEKRGEFAVRGGILDVFPPTAEHPLRVEFWGDEVTEIRPFSVADQRSLPK-QVDAFTA 227 Query: 240 VACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPD 299 CRELLLTE V Q A+E+ + +ML KLAEGIP++GMEAL+P L Sbjct: 228 PPCRELLLTERVRARA-----QELAAEHEADAQLAEMLTKLAEGIPSEGMEALIPALCDG 282 Query: 300 DHALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGG 359 + LLTD + +GT VLV DPEK+R RA DL++TG+EFLEASW AA G AP+D LG Sbjct: 283 ELQLLTDLVPDGTHVLVNDPEKIRARARDLVRTGQEFLEASWMAAAGGGKAPID---LGA 339 Query: 360 SGFAELEQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHV 419 S + L++V AA ++ PWWTLSQL+ E + L + +Q D+D FA LRAH Sbjct: 340 SAYRSLDEVADAARAADKPWWTLSQLTTEGSDVLRLEFK-HVHAYQGDVDRAFADLRAHT 398 Query: 420 STGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEP-GAAPKLGVVGVLKGPLRDGVIVPG 478 + GG AV+V PGTGTA R E+L E+ + A ++ P+ G V V++G L DG +P Sbjct: 399 AAGGTAVLVVPGTGTAQRATEQLREAQVGAVCVDSLDEPPRTGAVTVVRGALEDGFALPE 458 Query: 479 ANLVVVTETNLTGNRA--TAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVE 536 LVV+TET+LTG R + + +R+ ++RRN VDPLAL GD VVH+QHGIGR+VEMV+ Sbjct: 459 LALVVLTETDLTGGRGGTSTKDMRRMPSRRRNAVDPLALRTGDYVVHEQHGIGRYVEMVQ 518 Query: 537 RTVGGARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTK 596 RTV GA REYLVLEYAS+KRG D+L+VP D LD++SRYVGG+ P L++LGGSDW NTK Sbjct: 519 RTVAGATREYLVLEYASSKRGQPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTK 578 Query: 597 TKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKG 656 KA+KAV++IA ELV LYA RQ++PGHAFAPDTPWQ E+EDAF FTETVDQ+ AI EVK Sbjct: 579 AKAKKAVKQIAAELVQLYAARQSAPGHAFAPDTPWQRELEDAFPFTETVDQMAAIDEVKA 638 Query: 657 DMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMA 716 DME+ +PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQV VLVPTTLLA QHL TFT+RM Sbjct: 639 DMERGVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTLLAQQHLNTFTERMR 698 Query: 717 GFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRF 776 FPV V+GLSRFTDP E+ G+A+G VDVVIGTHRLLQ G+R+KDLGLV+VDEEQRF Sbjct: 699 AFPVVVRGLSRFTDPTEAEQTTTGLAEGDVDVVIGTHRLLQKGLRYKDLGLVIVDEEQRF 758 Query: 777 GVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHD 836 GVEHKEHIK+LR+HVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEER+P+LTYVG + Sbjct: 759 GVEHKEHIKALRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPILTYVGGYA 818 Query: 837 DKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTV 896 DKQV AA+RRELLRDGQ FYVHNRVSSI+ A RIR+L PEARVV AHGQM ED LE+ + Sbjct: 819 DKQVGAAIRRELLRDGQVFYVHNRVSSIEKAARRIRELAPEARVVTAHGQMNEDKLEKII 878 Query: 897 QGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYF 956 QGFW+RE+D+LV TTIVETGLDISNANTLIVER D GLSQLHQLRGRVGR RERGYAYF Sbjct: 879 QGFWEREYDVLVSTTIVETGLDISNANTLIVERGDLLGLSQLHQLRGRVGRGRERGYAYF 938 Query: 957 LYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDL 1016 LYPP++PL+ETA+DRLATIAQN ELGAGMAVA+KDLEIRGAGN+LG EQSGH+AGVGFDL Sbjct: 939 LYPPESPLSETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDL 998 Query: 1017 YVRLVGEAVEAYR--AAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXX 1074 YVRLVGEAVEA+R A ADG+ EP +VR++LPVDAH+P DY+ + Sbjct: 999 YVRLVGEAVEAFRRSAGADGELEV---EPAEVRVELPVDAHIPHDYVPGERLRLEAYRKI 1055 Query: 1075 XXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAP 1134 ++G+ AV DEL DRYGA P P G+T+V+ S ++R AP Sbjct: 1056 AAAVDEAGLTAVRDELKDRYGAPPLPVERLLDVARLRHTCRAHGVTEVALQGS-SIRFAP 1114 Query: 1135 MDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGG----VGAPRIRDVELVQMVANLVT 1190 ++L DS VRL+R++P Y+ ST+ P P +G +GAP +RD EL+ A+ + Sbjct: 1115 LELKDSQVVRLRRLHPKAVYKQAVSTITTPRPTEGAAGGRMGAPPLRDQELLAWCAHFLE 1174 Query: 1191 ALAGKP 1196 +LAG P Sbjct: 1175 SLAGAP 1180 >tr|A4F7Z2|A4F7Z2_SACEN Tax_Id=405948 (mfd)SubName: Full=Transcription-repair coupling factor;[Saccharopolyspora erythraea] Length = 1195 Score = 1390 bits (3599), Expect = 0.0 Identities = 734/1198 (61%), Positives = 887/1198 (74%), Gaps = 25/1198 (2%) Query: 12 PIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG-PLLVVTATGR 70 P+ GL++ L +Q++ A DRP L L GPA+AR A+ALA P+L+VTATGR Sbjct: 6 PLRGLLETMLRDSAVRQVV-EAVDRP-RLVLEGPAAARPLAAAALAAADRPVLLVTATGR 63 Query: 71 EADDVTAELRGVFG-EAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLGPP 129 EA++V A + + G + V +FPSWETLPHERLSP DTVG AHPE+ G Sbjct: 64 EAEEVAAAVSDLIGSDGVEVFPSWETLPHERLSPRADTVGRRLAVLRRLAHPEEHDHGR- 122 Query: 130 LRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFA 189 +RV+VT VRSL+QP+ P LG PV L VG E F+E++ +L LAY RVDMV +RGEFA Sbjct: 123 IRVLVTTVRSLIQPIAPGLGELAPVRLRVGDEHDFEELVEKLAALAYNRVDMVEKRGEFA 182 Query: 190 VRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTE 249 VRGGI+D+F PT EHP+RVEFWGDE+TE+R FSVADQRS+PE + +TL A ACRELL+TE Sbjct: 183 VRGGIVDVFPPTEEHPLRVEFWGDEVTEVRPFSVADQRSLPEAQDTTLFAPACRELLITE 242 Query: 250 DVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQLA 309 V QH A + + +ML K+A G P +GMEAL+P L + LLTD + Sbjct: 243 QVQERAAKLAEQHEADAH-----LNEMLGKIAGGAPVEGMEALIPALCEGEMRLLTDLVP 297 Query: 310 EGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGSGFAELEQVQ 369 GT V+V DPEKVR RAADL++TG+EFLEASW VAA G AP+D LG S + L +V Sbjct: 298 GGTHVVVADPEKVRARAADLVRTGQEFLEASWMVAADGGRAPID---LGASAYRGLAEVA 354 Query: 370 TAASSSGHPWWTLSQLSEESATELE--VRAA-PSARGHQKDIDDIFAMLRAHVSTGGYAV 426 S+G PWWTL+QLS E + + VR A ++ +++ FA LRAH + GG AV Sbjct: 355 AHTESTGLPWWTLTQLSSEDTEDDDGVVRLALKQVDAYRGEVERAFADLRAHTTAGGAAV 414 Query: 427 MVEPGTGTAHRMVERLAESDIPAAMLEPG--AAPKLGVVGVLKGPLRDGVIVPGANLVVV 484 +V G GTA R V++L E ++PA + E G A P+ GVV V +G L DG P LVV+ Sbjct: 415 LVVAGAGTAQRAVQQLREGELPARLAEDGLTAEPEPGVVTVARGGLEDGFAAPEVALVVL 474 Query: 485 TETNLTGNRA--TAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGA 542 TE +LTG R + + +R+ ++RRN VDPLAL AGD VVH+QHGIG++VEMV+RTVGGA Sbjct: 475 TEADLTGGRGGTSTKDMRRMPSRRRNAVDPLALKAGDFVVHEQHGIGKYVEMVQRTVGGA 534 Query: 543 RREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKARKA 602 REYLVLEYAS+KRG D+L+VP D LD++SRYVGG+ P L++LGGSDW NTK KARKA Sbjct: 535 TREYLVLEYASSKRGQPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKARKA 594 Query: 603 VREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEKSI 662 V+EIA ELV LYA RQ++PGHAF DTPWQ E+EDAF +TET DQL AI EVK DM++++ Sbjct: 595 VKEIAAELVQLYAARQSAPGHAFGADTPWQRELEDAFPYTETGDQLAAIDEVKADMQRAV 654 Query: 663 PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPVTV 722 PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLA QHL TFTDRM FPVTV Sbjct: 655 PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFTDRMRSFPVTV 714 Query: 723 KGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKE 782 KGLSRFTDP ES G+A+G+VDVVIGTHRLLQTGVR+KDLGLV+VDEEQRFGVEHKE Sbjct: 715 KGLSRFTDPLESEQTTTGLAEGTVDVVIGTHRLLQTGVRYKDLGLVIVDEEQRFGVEHKE 774 Query: 783 HIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQVAA 842 HIK+LR+HVDVLTMSATPIPRTLEMS+AGIREMSTILTPPEER+PVLTYVG +D+KQVAA Sbjct: 775 HIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYDEKQVAA 834 Query: 843 ALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGFWQR 902 A+RRELLRDGQ F+VHNRV +I+ A +R+LVPEAR+V AHGQM ED LE+ +QGFW+R Sbjct: 835 AIRRELLRDGQVFFVHNRVQTIEKAARHLRELVPEARIVTAHGQMNEDRLEKIIQGFWER 894 Query: 903 EFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQA 962 E D+LVCTTIVETGLDISNANTLIVER+D GLSQLHQLRGRVGR+RERGYAYFLYP + Sbjct: 895 EHDVLVCTTIVETGLDISNANTLIVERSDVLGLSQLHQLRGRVGRARERGYAYFLYPEEK 954 Query: 963 PLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLVG 1022 PLT+TA+DRLATIAQN+ELGAGMAVA+KDLEIRGAGN+LG EQSGH+AGVGFDLYVRLVG Sbjct: 955 PLTDTAHDRLATIAQNSELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVG 1014 Query: 1023 EAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXXXXTSDSG 1082 EAVEA+R A + EE +VR+DLPVDAH+P DY+ + Sbjct: 1015 EAVEAFRRHAGAEPGAGEEELPEVRVDLPVDAHIPHDYVPGERLRLEAYRKIAAAGDTEA 1074 Query: 1083 VAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAPMDLPDSAQ 1142 + AV EL DRYG+LPEP G+T+V+ ++R AP++L DS Sbjct: 1075 LDAVRAELTDRYGSLPEPVERLLKVAAFRQLCRAHGVTEVT-QQGTSLRAAPLELADSQL 1133 Query: 1143 VRLKRMYPGGHYRATTSTVQVPIPRDGG----VGAPRIRDVELVQMVANLVTALAGKP 1196 VRLKR+YP Y+A TV VP P +G +GAP +RD L+ A L+ +LAG+P Sbjct: 1134 VRLKRLYPKAVYKAAVRTVSVPRPTEGAAGGRIGAPPLRDEALLDWCAKLLESLAGRP 1191 >tr|C7MZH3|C7MZH3_SACVD Tax_Id=471857 SubName: Full=Transcription-repair coupling factor Mfd;[Saccharomonospora viridis] Length = 1199 Score = 1356 bits (3509), Expect = 0.0 Identities = 716/1213 (59%), Positives = 879/1213 (72%), Gaps = 36/1213 (2%) Query: 1 MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 MT S ++GL+ L+ P + ++ +A L L G + V +ALA Sbjct: 1 MTDSPNGSSSGALSGLLSALLSDPALRGVVEQAG--APLLDLDGSTATHQLVVAALAADR 58 Query: 61 ----PLLVVTATGREADDVTAELRGVFGE-AVALFPSWETLPHERLSPGVDTVGAXXXXX 115 P+L VT TGR+A+++TA LR + GE VA FPSWETLPHERLSP DTVG Sbjct: 59 GAGRPVLAVTPTGRQAEELTAALRSLLGENLVADFPSWETLPHERLSPRADTVGKRLEVL 118 Query: 116 XXXAHPEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELA 175 A P+ L RVVV VRSL+QPM P LG PV L VGQE F+ V+ +LVELA Sbjct: 119 RRLAQPDHGGL----RVVVATVRSLIQPMAPGLGGLHPVELRVGQESDFEAVLDQLVELA 174 Query: 176 YTRVDMVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVS 235 YTRVDMV +RGEFAVRGGILD+F PTAEHP R+EFWGDE++E+R F+V+DQRS+P EV+ Sbjct: 175 YTRVDMVEKRGEFAVRGGILDIFGPTAEHPHRIEFWGDEVSEIRAFAVSDQRSLPG-EVT 233 Query: 236 TLVAVACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPV 295 ++A CRE+LLT DV H + + +ML KLA+G+P +GMEAL+PV Sbjct: 234 EVIAPPCREILLTPDVKARAAELARTHADN-----AQLSEMLTKLADGVPCEGMEALIPV 288 Query: 296 LRPDDHALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVE 355 L + LLTD L EGT V++ +PEK R RAADL++TG+EFLEASW AA G +AP+D Sbjct: 289 LCEGELQLLTDALPEGTHVVLIEPEKSRARAADLVRTGQEFLEASWMSAADGGEAPLD-- 346 Query: 356 ALGGSGFAELEQVQTAASSSGHPWWTLSQLSEES-ATELEVRAAPSARGHQKDIDDIFAM 414 LG S + +L++V+ A+ + WWTLSQL+ ES A + + +AP+ RG +++ + Sbjct: 347 -LGASAYRDLDEVRAHATETNRCWWTLSQLTSESGAHHVAIDSAPAYRG---ELERVATD 402 Query: 415 LRAHVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAA--PKLGVVGVLKGPLRD 472 LRAH ++GG AV+V G GTA R V++L+ +++PA + G PK GVV V G + D Sbjct: 403 LRAHTASGGAAVVVVAGAGTAKRAVDQLSGAEVPATLATEGLTEEPKPGVVTVTCGGISD 462 Query: 473 GVIVPGANLVVVTETNLTGNRATAVEGK-----RLAAKRRNTVDPLALTAGDLVVHDQHG 527 G + PG+ LVV++E ++TG ATA ++ ++RRN VDPLAL +GD VVHDQHG Sbjct: 463 GFVAPGSALVVLSEADITGRGATAGRSNVDLNTKMPSRRRNAVDPLALKSGDYVVHDQHG 522 Query: 528 IGRFVEMVERTVGGARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRL 587 IGRFVEMV RTVGGA REYLV+EYA +KRG D+L+VP D LD++SRYVGG+ P L+++ Sbjct: 523 IGRFVEMVRRTVGGATREYLVIEYAPSKRGHPGDRLFVPTDQLDEVSRYVGGETPTLNKM 582 Query: 588 GGSDWTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQ 647 GG+DW TK +ARKAV+EIA ELV LYA RQA+PGHAF+PDTPWQ E+EDAF FTET DQ Sbjct: 583 GGADWKKTKARARKAVKEIAAELVQLYAARQAAPGHAFSPDTPWQRELEDAFPFTETADQ 642 Query: 648 LTAITEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQH 707 L AI EVK DME+ +PMDRVICGDVGYGKTEIAVRAAFKAVQDGKQV VLVPTT+LA QH Sbjct: 643 LAAIDEVKRDMERDVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVVVLVPTTILAQQH 702 Query: 708 LQTFTDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGL 767 L TF++RM FPVT+KGLSRFTDP E+ VI G+ADG VD+VIGTHRLLQ+ VR+KDLGL Sbjct: 703 LATFSERMRSFPVTIKGLSRFTDPHEAEQVINGLADGEVDIVIGTHRLLQSNVRYKDLGL 762 Query: 768 VVVDEEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYP 827 V+VDEEQRFGVEHKEHIK+LR+HVDVLTMSATPIPRTLEMS+AGIREMSTILTPPE+R+P Sbjct: 763 VIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHP 822 Query: 828 VLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQM 887 +LTYVG +DDKQVAAA+RRELLRDGQ FYVHNRVSSI+ A R+R+LVPEARVV AHGQM Sbjct: 823 ILTYVGAYDDKQVAAAIRRELLRDGQVFYVHNRVSSIERAARRLRELVPEARVVTAHGQM 882 Query: 888 PEDLLERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGR 947 E LE+ +QGFW+RE+D+LVCTTIVETGLDISNANTLIVE AD GL+QLHQLRGRVGR Sbjct: 883 NEHRLEQIIQGFWEREYDVLVCTTIVETGLDISNANTLIVEHADQLGLAQLHQLRGRVGR 942 Query: 948 SRERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSG 1007 RERGYAYFLYP PLTETA+DRLATIAQN ELGAGMAVA+KDLEIRGAGN+LG EQSG Sbjct: 943 GRERGYAYFLYPADKPLTETAHDRLATIAQNTELGAGMAVAMKDLEIRGAGNILGAEQSG 1002 Query: 1008 HVAGVGFDLYVRLVGEAVEAYRAAADGKTVTTPEEPKDVRIDLPVDAHLPPDYIGSDXXX 1067 H+AGVGFDLYVRLVGEAVEA+R A P +VR+DLPVDAH+P DY+ + Sbjct: 1003 HIAGVGFDLYVRLVGEAVEAFRRHAGAGEPEEEPTPTEVRVDLPVDAHIPHDYVPGERLR 1062 Query: 1068 XXXXXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSS 1127 G+ AV +EL+DRYG LP P +G+T+V+ + Sbjct: 1063 LEAYRKIAAAPDAEGLDAVREELVDRYGKLPAPVERLLAVAAFRQVCREAGVTEVTLQGN 1122 Query: 1128 ATVRLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRD----GGVGAPRIRDVELVQ 1183 +R P+ L DS VRLKR+YP ++A T+TV VP P + G +GAP +RD L+ Sbjct: 1123 -NIRFTPLQLADSQLVRLKRLYPRAVFKAVTNTVSVPRPTEGPAGGRIGAPVLRDEPLLD 1181 Query: 1184 MVANLVTALAGKP 1196 L+ +L P Sbjct: 1182 WCTTLIRSLTRTP 1194 >tr|Q6M6I8|Q6M6I8_CORGL Tax_Id=1718 (mfd)SubName: Full=PUTATIVE TRANSCRIPTION-REPAIR COUPLING FACTOR;[Corynebacterium glutamicum] Length = 1217 Score = 1308 bits (3385), Expect = 0.0 Identities = 693/1211 (57%), Positives = 847/1211 (69%), Gaps = 40/1211 (3%) Query: 13 IAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVTATGREA 72 +AGL+ +A T P + L++ + L + G AR + ALA P+LVVTATGREA Sbjct: 5 LAGLLKVAATDPKLKGLMSNVGQQ--HLHITGIDQARPWAIGALAHHAPVLVVTATGREA 62 Query: 73 DDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLGPPLRV 132 +D+TAEL+ + G+ VA PSWETLPHERLSPGVD VG LG L+V Sbjct: 63 EDLTAELKAMMGDKVAWLPSWETLPHERLSPGVDIVGKRAQVL--------NHLGD-LKV 113 Query: 133 VVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVRG 192 VV A R+ QP+ + P++L G E F + LV AY VDMV +RGEFA RG Sbjct: 114 VVAAARAFCQPVLKDAEGRAPLTLKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRG 173 Query: 193 GILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTEDVX 252 GILD+F T ++PVRVEFWGDE++++R FSVADQR+IPEI + ++ RELL+TE+V Sbjct: 174 GILDIFPTTLDYPVRVEFWGDEVSDIRQFSVADQRTIPEITIKSIEIFPARELLITEEVA 233 Query: 253 XXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQLAEGT 312 +HP + ++++ML+++A+ DGMEAL+P L + + + E T Sbjct: 234 SRAESLISKHPGNP-----TLVEMLSRIADSQDVDGMEALIPALTDTPMVPMLELMPENT 288 Query: 313 PVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALG--GSGFAELEQVQT 370 VLV PEKVR R ADL T EFL A W AAMG D PV E L S + E ++ Sbjct: 289 HVLVIAPEKVRRRIADLEATDAEFLMAGWEAAAMGADGPVAAEGLDLEASSYRSYESLEV 348 Query: 371 AASSSGHPWWTLS-----QLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVSTGGYA 425 +AS S WWT + + SEE+ L+ A P+ RG ID + A L AH + GG A Sbjct: 349 SASKSDVRWWTFAPPGMFEASEEATLPLDFEAGPAPRGELPKIDAMMAQLLAHTTGGGRA 408 Query: 426 VMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN----- 480 + P G RMV+R AE IP + PG P G V + G++ P Sbjct: 409 AFIAPTQGAIKRMVDRFAEKGIPTHVATPGWEPTPGQVTLYHALSHAGLVFPKVRKHRDG 468 Query: 481 ----LVVVTETNLTGNRATAVEG-KRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMV 535 LVV+TET+LTGNR + G KR AKRRN VDPLAL GDLVVH+ HGIGRFV+M Sbjct: 469 AAMPLVVITETDLTGNRVGDIAGAKRRPAKRRNKVDPLALEPGDLVVHETHGIGRFVKMT 528 Query: 536 ERTVGG----ARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSD 591 ERT+ +RREY+VLEYA +KRG D+LYVPMD+LD LSRYVGG+ P LS++GGSD Sbjct: 529 ERTISAGDETSRREYIVLEYAPSKRGQPGDQLYVPMDALDMLSRYVGGEKPTLSKMGGSD 588 Query: 592 WTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAI 651 W N K KAR AVREIAGELV LYAKRQ++PGH FAPDTPWQ EMED F + ET DQ+ AI Sbjct: 589 WKNAKKKARAAVREIAGELVELYAKRQSAPGHPFAPDTPWQKEMEDNFPYVETEDQMLAI 648 Query: 652 TEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 711 VK DMEKS+PMDRVI GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTTLLA QH TF Sbjct: 649 DAVKEDMEKSVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTF 708 Query: 712 TDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVD 771 +RM GFPVT+KGLSRFT PAESR ++ G+A GSVD+VIGTHRLLQTGV+WK+LGLV+VD Sbjct: 709 EERMTGFPVTIKGLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLVIVD 768 Query: 772 EEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 831 EEQRFGVEHKEHIK+LR+HVDVLTMSATPIPRTLEMS+AGIREM+T+LTPPE+R+P+LTY Sbjct: 769 EEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTY 828 Query: 832 VGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDL 891 VGP++DKQVAA++RRELLRDGQ F++HN+V+ I+ A IR LVPEARVVVAHGQM E+L Sbjct: 829 VGPYEDKQVAASIRRELLRDGQVFFIHNKVADIEKKAREIRDLVPEARVVVAHGQMSEEL 888 Query: 892 LERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 951 LE+TVQGFW RE+D+LVCTTIVETGLDISNANTLIVE A GLSQLHQLRGRVGRSRER Sbjct: 889 LEQTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRER 948 Query: 952 GYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAG 1011 GYAYFLYP A LTE +YDRLATIAQNN+LGAGMAVA+KDLE+RGAGNVLG EQSGH+AG Sbjct: 949 GYAYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAG 1008 Query: 1012 VGFDLYVRLVGEAVEAYRAAADGKTVT-TPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 VGFDLYVRLVGEAVEAYRA ADGK V T + PK++R+DLPVDAH+P YI ++ Sbjct: 1009 VGFDLYVRLVGEAVEAYRALADGKVVDGTVKGPKEIRVDLPVDAHIPEKYINAERLRLEI 1068 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 S+ + V+E+ DRYG +PE + +TD+ A + Sbjct: 1069 YRKLAQSESEVDLRLAVEEMEDRYGPIPEEVERLLAVSRLRHLMREAHLTDI-AVQGTRI 1127 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGG-VGAPRIRDVELVQMVANLV 1189 ++ P+DL DS QVRLKR++PG YRA +Q+ P+ G V P +RDV+L+Q VAN + Sbjct: 1128 KVHPVDLADSQQVRLKRLFPGATYRAAAKAIQLSFPKTGNKVTDPLLRDVDLLQWVANFI 1187 Query: 1190 TALAGKPQQDI 1200 + + + D+ Sbjct: 1188 SNMFNLEEIDV 1198 >tr|A4QCT9|A4QCT9_CORGB Tax_Id=340322 SubName: Full=Putative uncharacterized protein;[Corynebacterium glutamicum] Length = 1214 Score = 1308 bits (3384), Expect = 0.0 Identities = 693/1211 (57%), Positives = 847/1211 (69%), Gaps = 40/1211 (3%) Query: 13 IAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVTATGREA 72 +AGL+ +A T P + L++ + L + G AR + ALA P+LVVTATGREA Sbjct: 2 LAGLLKVAATDPKLKGLMSNVGQQ--HLHITGIDQARPWAIGALAHHAPVLVVTATGREA 59 Query: 73 DDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLGPPLRV 132 +D+TAEL+ + G+ VA PSWETLPHERLSPGVD VG LG L+V Sbjct: 60 EDLTAELKAMMGDKVAWLPSWETLPHERLSPGVDIVGKRAQVL--------NHLGD-LKV 110 Query: 133 VVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVRG 192 VV A R+ QP+ + P++L G E F + LV AY VDMV +RGEFA RG Sbjct: 111 VVAAARAFCQPVLKDAEGRAPLTLKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRG 170 Query: 193 GILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTEDVX 252 GILD+F T ++PVRVEFWGDE++++R FSVADQR+IPEI + ++ RELL+TE+V Sbjct: 171 GILDIFPTTLDYPVRVEFWGDEVSDIRQFSVADQRTIPEITIKSIEIFPARELLITEEVA 230 Query: 253 XXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQLAEGT 312 +HP + ++++ML+++A+ DGMEAL+P L + + + E T Sbjct: 231 SRAESLISKHPGNP-----TLVEMLSRIADSQDVDGMEALIPALTDTPMVPMLELMPENT 285 Query: 313 PVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALG--GSGFAELEQVQT 370 VLV PEKVR R ADL T EFL A W AAMG D PV E L S + E ++ Sbjct: 286 HVLVIAPEKVRRRIADLEATDAEFLMAGWEAAAMGADGPVAAEGLDLEASSYRSYESLEV 345 Query: 371 AASSSGHPWWTLS-----QLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVSTGGYA 425 +AS S WWT + + SEE+ L+ A P+ RG ID + A L AH + GG A Sbjct: 346 SASKSDVRWWTFAPPGMFEASEEATLPLDFEAGPAPRGELPKIDAMMAQLLAHTTGGGRA 405 Query: 426 VMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN----- 480 + P G RMV+R AE IP + PG P G V + G++ P Sbjct: 406 AFIAPTQGAIKRMVDRFAEKGIPTHVATPGWEPTPGQVTLYHALSHAGLVFPKVRKHRDG 465 Query: 481 ----LVVVTETNLTGNRATAVEG-KRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMV 535 LVV+TET+LTGNR + G KR AKRRN VDPLAL GDLVVH+ HGIGRFV+M Sbjct: 466 AAMPLVVITETDLTGNRVGDIAGAKRRPAKRRNKVDPLALEPGDLVVHETHGIGRFVKMT 525 Query: 536 ERTVGG----ARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSD 591 ERT+ +RREY+VLEYA +KRG D+LYVPMD+LD LSRYVGG+ P LS++GGSD Sbjct: 526 ERTISAGDETSRREYIVLEYAPSKRGQPGDQLYVPMDALDMLSRYVGGEKPTLSKMGGSD 585 Query: 592 WTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAI 651 W N K KAR AVREIAGELV LYAKRQ++PGH FAPDTPWQ EMED F + ET DQ+ AI Sbjct: 586 WKNAKKKARAAVREIAGELVELYAKRQSAPGHPFAPDTPWQKEMEDNFPYVETEDQMLAI 645 Query: 652 TEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 711 VK DMEKS+PMDRVI GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTTLLA QH TF Sbjct: 646 DAVKEDMEKSVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTF 705 Query: 712 TDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVD 771 +RM GFPVT+KGLSRFT PAESR ++ G+A GSVD+VIGTHRLLQTGV+WK+LGLV+VD Sbjct: 706 EERMTGFPVTIKGLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLVIVD 765 Query: 772 EEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 831 EEQRFGVEHKEHIK+LR+HVDVLTMSATPIPRTLEMS+AGIREM+T+LTPPE+R+P+LTY Sbjct: 766 EEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTY 825 Query: 832 VGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDL 891 VGP++DKQVAA++RRELLRDGQ F++HN+V+ I+ A IR LVPEARVVVAHGQM E+L Sbjct: 826 VGPYEDKQVAASIRRELLRDGQVFFIHNKVADIEKKAREIRDLVPEARVVVAHGQMSEEL 885 Query: 892 LERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 951 LE+TVQGFW RE+D+LVCTTIVETGLDISNANTLIVE A GLSQLHQLRGRVGRSRER Sbjct: 886 LEQTVQGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRER 945 Query: 952 GYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAG 1011 GYAYFLYP A LTE +YDRLATIAQNN+LGAGMAVA+KDLE+RGAGNVLG EQSGH+AG Sbjct: 946 GYAYFLYPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAG 1005 Query: 1012 VGFDLYVRLVGEAVEAYRAAADGKTVT-TPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 VGFDLYVRLVGEAVEAYRA ADGK V T + PK++R+DLPVDAH+P YI ++ Sbjct: 1006 VGFDLYVRLVGEAVEAYRALADGKVVDGTVKGPKEIRVDLPVDAHIPEKYINAERLRLEI 1065 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 S+ + V+E+ DRYG +PE + +TD+ A + Sbjct: 1066 YRKLAQSESEVDLRLAVEEMEDRYGPIPEEVERLLAVSRLRHLMREAHLTDI-AVQGTRI 1124 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGG-VGAPRIRDVELVQMVANLV 1189 ++ P+DL DS QVRLKR++PG YRA +Q+ P+ G V P +RDV+L+Q VAN + Sbjct: 1125 KVHPVDLADSQQVRLKRLFPGATYRAAAKAIQLSFPKAGNKVTDPLLRDVDLLQWVANFI 1184 Query: 1190 TALAGKPQQDI 1200 + + + D+ Sbjct: 1185 SNMFNLEEIDV 1195 >tr|Q8FQT5|Q8FQT5_COREF Tax_Id=152794 SubName: Full=Putative transcription-repair coupling factor;[Corynebacterium efficiens] Length = 1218 Score = 1305 bits (3378), Expect = 0.0 Identities = 683/1211 (56%), Positives = 850/1211 (70%), Gaps = 40/1211 (3%) Query: 13 IAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVTATGREA 72 +AGL+ +A T P + +I+ R L L G AR +V LA P+LVVTATGREA Sbjct: 5 LAGLLKVAATDPKLKGMISNVGAR--NLHLTGVDQARPWVIGTLAHHAPVLVVTATGREA 62 Query: 73 DDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLGPPLRV 132 +D+TAELR + G+ VA FPSWETLPHERLSPGVD VG ++ Sbjct: 63 EDLTAELRAMMGDKVAWFPSWETLPHERLSPGVDIVGRRAQVLNKL---------DDAKI 113 Query: 133 VVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVRG 192 +VTA R+ QP+ + ++P+ L G E F + LV AY VDMV +RGEFA RG Sbjct: 114 IVTAARAFCQPVLKEAAGRQPLILREGAEADFSALGEELVFRAYKNVDMVAKRGEFATRG 173 Query: 193 GILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTEDVX 252 GILD+F T ++PVR+EFWGDE++++R FSVADQR+IPE+ + + RELL+T++V Sbjct: 174 GILDVFPTTLDYPVRIEFWGDEVSDIRQFSVADQRTIPEMTLDEIEIYPARELLITDEVA 233 Query: 253 XXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQLAEGT 312 +HP + ++++ML+++++ DGMEAL+P L L + + E T Sbjct: 234 ARAAELMVKHPGNP-----TLVEMLSRISDRTDVDGMEALIPALVDTPMVPLLELMPENT 288 Query: 313 PVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALG--GSGFAELEQVQT 370 ++V PEKVRTR ADL T EF+ A W AAMG D PV V+ L S + + ++ Sbjct: 289 HIMVIAPEKVRTRIADLEATDAEFMAAGWEAAAMGADGPVSVKGLDLEASSYRSYDSLEV 348 Query: 371 AASSSGHPWWTLS-----QLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVSTGGYA 425 +AS+S PWWT + + S+ L+ P+ RG + I+++ A+L AH GG A Sbjct: 349 SASTSNLPWWTFAPTGMFEASDAETLPLDFEPGPTPRGDLEAINEMMALLLAHTKAGGRA 408 Query: 426 VMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN----- 480 + P G RMVER AE IP + PG P G V + G++ P Sbjct: 409 AFIAPSEGAIRRMVERFAEQGIPTHVATPGWEPSPGQVTLYHALSHAGLVFPKVRKHRDA 468 Query: 481 ----LVVVTETNLTGNRATAVEG-KRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMV 535 LVV+TET+LTGNR + G KR A+RRN VDPLALT GDLVVH+ HGIGRF++M Sbjct: 469 DALPLVVITETDLTGNRVGDIAGAKRRPARRRNKVDPLALTPGDLVVHETHGIGRFIKMT 528 Query: 536 ERTVGG----ARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSD 591 ERT+ +RREY+VLEYA +KRG D+LYVPMDSLD LSRYVGG+ P LS++GGSD Sbjct: 529 ERTISTGDETSRREYIVLEYAPSKRGQPGDQLYVPMDSLDMLSRYVGGEKPTLSKMGGSD 588 Query: 592 WTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAI 651 W NTK KAR AVREIAGELV LYAKRQA+PGHAF PDTPWQ EMED F + ET DQ+ AI Sbjct: 589 WKNTKKKARAAVREIAGELVELYAKRQAAPGHAFGPDTPWQKEMEDNFPYVETEDQMLAI 648 Query: 652 TEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 711 VK DMEK +PMDRVI GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTTLLA QH TF Sbjct: 649 DAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHKSTF 708 Query: 712 TDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVD 771 +RMAGFPVT+ GLSRFT AES+ + G+A G VD+V+GTHRLLQTGV+WK+LGLV+VD Sbjct: 709 EERMAGFPVTIHGLSRFTSTAESKETLAGLASGEVDIVVGTHRLLQTGVQWKNLGLVIVD 768 Query: 772 EEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 831 EEQRFGVEHKEHIK+LRSHVDVLTMSATPIPRTLEMS+AGIREM+T+LTPPE+R+P+LTY Sbjct: 769 EEQRFGVEHKEHIKALRSHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTY 828 Query: 832 VGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDL 891 VGP++DKQVAA++RRELLRDGQ F++HN+V+ I+ A +R LVPEARVVVAHGQM E+L Sbjct: 829 VGPYEDKQVAASIRRELLRDGQVFFIHNKVADIEKKARELRDLVPEARVVVAHGQMSEEL 888 Query: 892 LERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 951 LE+TVQGFW RE+D+LVCTTIVETGLDI+NANTLIVE A GLSQLHQLRGRVGRSRER Sbjct: 889 LEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRER 948 Query: 952 GYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAG 1011 GYAYFLYP A LTET+YDRLATIAQNN+LGAGMAVA+KDLE+RGAGNVLG EQSGH+AG Sbjct: 949 GYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAG 1008 Query: 1012 VGFDLYVRLVGEAVEAYRAAADGKTVT-TPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 VGFDLYVRLVGEAVEAYRA ADGK+V T + P +VR+DLPVDAH+P +YI S+ Sbjct: 1009 VGFDLYVRLVGEAVEAYRALADGKSVDGTVKGPTEVRVDLPVDAHIPENYINSERLRLEI 1068 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 S+S + V+E+ DRYG +PE +G+TDV A + Sbjct: 1069 YRKLATSESESDLQLAVEEMEDRYGPIPEEVSRLLAVARLRHQMRAAGLTDV-AVQGTRI 1127 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDG-GVGAPRIRDVELVQMVANLV 1189 ++ P++L DS QVRLKR++P YRA +QV P+ G V P +RDV+L+Q V++ + Sbjct: 1128 KIHPVELKDSQQVRLKRLFPSATYRAAAKAIQVSFPKAGRNVTDPLLRDVDLLQWVSDFI 1187 Query: 1190 TALAGKPQQDI 1200 + ++D+ Sbjct: 1188 AKMFDIDERDV 1198 >tr|C8NN51|C8NN51_COREF Tax_Id=196164 (mfd)SubName: Full=Transcription-repair coupling factor; EC=3.6.1.-;[Corynebacterium efficiens YS-314] Length = 1215 Score = 1305 bits (3378), Expect = 0.0 Identities = 683/1211 (56%), Positives = 850/1211 (70%), Gaps = 40/1211 (3%) Query: 13 IAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVTATGREA 72 +AGL+ +A T P + +I+ R L L G AR +V LA P+LVVTATGREA Sbjct: 2 LAGLLKVAATDPKLKGMISNVGAR--NLHLTGVDQARPWVIGTLAHHAPVLVVTATGREA 59 Query: 73 DDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLGPPLRV 132 +D+TAELR + G+ VA FPSWETLPHERLSPGVD VG ++ Sbjct: 60 EDLTAELRAMMGDKVAWFPSWETLPHERLSPGVDIVGRRAQVLNKL---------DDAKI 110 Query: 133 VVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVRG 192 +VTA R+ QP+ + ++P+ L G E F + LV AY VDMV +RGEFA RG Sbjct: 111 IVTAARAFCQPVLKEAAGRQPLILREGAEADFSALGEELVFRAYKNVDMVAKRGEFATRG 170 Query: 193 GILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTEDVX 252 GILD+F T ++PVR+EFWGDE++++R FSVADQR+IPE+ + + RELL+T++V Sbjct: 171 GILDVFPTTLDYPVRIEFWGDEVSDIRQFSVADQRTIPEMTLDEIEIYPARELLITDEVA 230 Query: 253 XXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQLAEGT 312 +HP + ++++ML+++++ DGMEAL+P L L + + E T Sbjct: 231 ARAAELMVKHPGNP-----TLVEMLSRISDRTDVDGMEALIPALVDTPMVPLLELMPENT 285 Query: 313 PVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALG--GSGFAELEQVQT 370 ++V PEKVRTR ADL T EF+ A W AAMG D PV V+ L S + + ++ Sbjct: 286 HIMVIAPEKVRTRIADLEATDAEFMAAGWEAAAMGADGPVSVKGLDLEASSYRSYDSLEV 345 Query: 371 AASSSGHPWWTLS-----QLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVSTGGYA 425 +AS+S PWWT + + S+ L+ P+ RG + I+++ A+L AH GG A Sbjct: 346 SASTSNLPWWTFAPTGMFEASDAETLPLDFEPGPTPRGDLEAINEMMALLLAHTKAGGRA 405 Query: 426 VMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN----- 480 + P G RMVER AE IP + PG P G V + G++ P Sbjct: 406 AFIAPSEGAIRRMVERFAEQGIPTHVATPGWEPSPGQVTLYHALSHAGLVFPKVRKHRDA 465 Query: 481 ----LVVVTETNLTGNRATAVEG-KRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMV 535 LVV+TET+LTGNR + G KR A+RRN VDPLALT GDLVVH+ HGIGRF++M Sbjct: 466 DALPLVVITETDLTGNRVGDIAGAKRRPARRRNKVDPLALTPGDLVVHETHGIGRFIKMT 525 Query: 536 ERTVGG----ARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSD 591 ERT+ +RREY+VLEYA +KRG D+LYVPMDSLD LSRYVGG+ P LS++GGSD Sbjct: 526 ERTISTGDETSRREYIVLEYAPSKRGQPGDQLYVPMDSLDMLSRYVGGEKPTLSKMGGSD 585 Query: 592 WTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAI 651 W NTK KAR AVREIAGELV LYAKRQA+PGHAF PDTPWQ EMED F + ET DQ+ AI Sbjct: 586 WKNTKKKARAAVREIAGELVELYAKRQAAPGHAFGPDTPWQKEMEDNFPYVETEDQMLAI 645 Query: 652 TEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 711 VK DMEK +PMDRVI GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTTLLA QH TF Sbjct: 646 DAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHKSTF 705 Query: 712 TDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVD 771 +RMAGFPVT+ GLSRFT AES+ + G+A G VD+V+GTHRLLQTGV+WK+LGLV+VD Sbjct: 706 EERMAGFPVTIHGLSRFTSTAESKETLAGLASGEVDIVVGTHRLLQTGVQWKNLGLVIVD 765 Query: 772 EEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 831 EEQRFGVEHKEHIK+LRSHVDVLTMSATPIPRTLEMS+AGIREM+T+LTPPE+R+P+LTY Sbjct: 766 EEQRFGVEHKEHIKALRSHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTY 825 Query: 832 VGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDL 891 VGP++DKQVAA++RRELLRDGQ F++HN+V+ I+ A +R LVPEARVVVAHGQM E+L Sbjct: 826 VGPYEDKQVAASIRRELLRDGQVFFIHNKVADIEKKARELRDLVPEARVVVAHGQMSEEL 885 Query: 892 LERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 951 LE+TVQGFW RE+D+LVCTTIVETGLDI+NANTLIVE A GLSQLHQLRGRVGRSRER Sbjct: 886 LEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRER 945 Query: 952 GYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAG 1011 GYAYFLYP A LTET+YDRLATIAQNN+LGAGMAVA+KDLE+RGAGNVLG EQSGH+AG Sbjct: 946 GYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAG 1005 Query: 1012 VGFDLYVRLVGEAVEAYRAAADGKTVT-TPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 VGFDLYVRLVGEAVEAYRA ADGK+V T + P +VR+DLPVDAH+P +YI S+ Sbjct: 1006 VGFDLYVRLVGEAVEAYRALADGKSVDGTVKGPTEVRVDLPVDAHIPENYINSERLRLEI 1065 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 S+S + V+E+ DRYG +PE +G+TDV A + Sbjct: 1066 YRKLATSESESDLQLAVEEMEDRYGPIPEEVSRLLAVARLRHQMRAAGLTDV-AVQGTRI 1124 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDG-GVGAPRIRDVELVQMVANLV 1189 ++ P++L DS QVRLKR++P YRA +QV P+ G V P +RDV+L+Q V++ + Sbjct: 1125 KIHPVELKDSQQVRLKRLFPSATYRAAAKAIQVSFPKAGRNVTDPLLRDVDLLQWVSDFI 1184 Query: 1190 TALAGKPQQDI 1200 + ++D+ Sbjct: 1185 AKMFDIDERDV 1195 >tr|Q8NRS9|Q8NRS9_CORGL Tax_Id=1718 SubName: Full=Transcription-repair coupling factor-superfamily II helicase;[Corynebacterium glutamicum] Length = 1209 Score = 1302 bits (3369), Expect = 0.0 Identities = 690/1205 (57%), Positives = 842/1205 (69%), Gaps = 40/1205 (3%) Query: 19 LALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVTATGREADDVTAE 78 +A T P + L++ + L + G AR + ALA P+LVVTATGREA+D+TAE Sbjct: 3 VAATDPKLKGLMSNVGQQ--HLHITGIDQARPWAIGALAHHAPVLVVTATGREAEDLTAE 60 Query: 79 LRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLGPPLRVVVTAVR 138 L+ + G+ VA PSWETLPHERLSPGVD VG LG L+VVV A R Sbjct: 61 LKAMMGDKVAWLPSWETLPHERLSPGVDIVGKRAQVL--------NHLGD-LKVVVAAAR 111 Query: 139 SLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVRGGILDLF 198 + QP+ + P++L G E F + LV AY VDMV +RGEFA RGGILD+F Sbjct: 112 AFCQPVLKDAEGRAPLTLKEGAEFDFSALTTELVFRAYKHVDMVAKRGEFATRGGILDIF 171 Query: 199 APTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTEDVXXXXXXX 258 T ++PVRVEFWGDE++++R FSVADQR+IPEI + ++ RELL+TE+V Sbjct: 172 PTTLDYPVRVEFWGDEVSDIRQFSVADQRTIPEITIKSIEIFPARELLITEEVASRAESL 231 Query: 259 XXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQLAEGTPVLVCD 318 +HP + ++++ML+++A+ DGMEAL+P L + + + E T VLV Sbjct: 232 ISKHPGNP-----TLVEMLSRIADSQDVDGMEALIPALTDTPMVPMLELMPENTHVLVIA 286 Query: 319 PEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALG--GSGFAELEQVQTAASSSG 376 PEKVR R ADL T EFL A W AAMG D PV E L S + E ++ +AS S Sbjct: 287 PEKVRRRIADLEATDAEFLMAGWEAAAMGADGPVAAEGLDLEASSYRSYESLEVSASKSD 346 Query: 377 HPWWTLS-----QLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVSTGGYAVMVEPG 431 WWT + + SEE+ L+ A P+ RG ID + A L AH + GG A + P Sbjct: 347 VRWWTFAPPGMFEASEEATLPLDFEAGPAPRGELPKIDAMMAQLLAHTTGGGRAAFIAPT 406 Query: 432 TGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN---------LV 482 G RMV+R AE IP + PG P G V + G++ P LV Sbjct: 407 QGAIKRMVDRFAEKGIPTHVATPGWEPTPGQVTLYHALSHAGLVFPKVRKHRDGAAMPLV 466 Query: 483 VVTETNLTGNRATAVEG-KRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVGG 541 V+TET+LTGNR + G KR AKRRN VDPLAL GDLVVH+ HGIGRFV+M ERT+ Sbjct: 467 VITETDLTGNRVGDIAGAKRRPAKRRNKVDPLALEPGDLVVHETHGIGRFVKMTERTISA 526 Query: 542 ----ARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKT 597 +RREY+VLEYA +KRG D+LYVPMD+LD LSRYVGG+ P LS++GGSDW N K Sbjct: 527 GDETSRREYIVLEYAPSKRGQPGDQLYVPMDALDMLSRYVGGEKPTLSKMGGSDWKNAKK 586 Query: 598 KARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGD 657 KAR AVREIAGELV LYAKRQ++PGH FAPDTPWQ EMED F + ET DQ+ AI VK D Sbjct: 587 KARAAVREIAGELVELYAKRQSAPGHPFAPDTPWQKEMEDNFPYVETEDQMLAIDAVKED 646 Query: 658 MEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAG 717 MEKS+PMDRVI GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTTLLA QH TF +RM G Sbjct: 647 MEKSVPMDRVIIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHQSTFEERMTG 706 Query: 718 FPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFG 777 FPVT+KGLSRFT PAESR ++ G+A GSVD+VIGTHRLLQTGV+WK+LGLV+VDEEQRFG Sbjct: 707 FPVTIKGLSRFTSPAESREILSGLAAGSVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFG 766 Query: 778 VEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDD 837 VEHKEHIK+LR+HVDVLTMSATPIPRTLEMS+AGIREM+T+LTPPE+R+P+LTYVGP++D Sbjct: 767 VEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTYVGPYED 826 Query: 838 KQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQ 897 KQVAA++RRELLRDGQ F++HN+V+ I+ A IR LVPEARVVVAHGQM E+LLE+TVQ Sbjct: 827 KQVAASIRRELLRDGQVFFIHNKVADIEKKAREIRDLVPEARVVVAHGQMSEELLEQTVQ 886 Query: 898 GFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFL 957 GFW RE+D+LVCTTIVETGLDISNANTLIVE A GLSQLHQLRGRVGRSRERGYAYFL Sbjct: 887 GFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFL 946 Query: 958 YPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLY 1017 YP A LTE +YDRLATIAQNN+LGAGMAVA+KDLE+RGAGNVLG EQSGH+AGVGFDLY Sbjct: 947 YPKGATLTEMSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLY 1006 Query: 1018 VRLVGEAVEAYRAAADGKTVT-TPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXXX 1076 VRLVGEAVEAYRA ADGK V T + PK++R+DLPVDAH+P YI ++ Sbjct: 1007 VRLVGEAVEAYRALADGKVVDGTVKGPKEIRVDLPVDAHIPEKYINAERLRLEIYRKLAQ 1066 Query: 1077 XTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAPMD 1136 S+ + V+E+ DRYG +PE + +TD+ A +++ P+D Sbjct: 1067 SESEVDLRLAVEEMEDRYGPIPEEVERLLAVSRLRHLMREAHLTDI-AVQGTRIKVHPVD 1125 Query: 1137 LPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGG-VGAPRIRDVELVQMVANLVTALAGK 1195 L DS QVRLKR++PG YRA +Q+ P+ G V P +RDV+L+Q VAN ++ + Sbjct: 1126 LADSQQVRLKRLFPGATYRAAAKAIQLSFPKTGNKVTDPLLRDVDLLQWVANFISNMFNL 1185 Query: 1196 PQQDI 1200 + D+ Sbjct: 1186 EEIDV 1190 >tr|Q6NI67|Q6NI67_CORDI Tax_Id=1717 (mfd)SubName: Full=Transcription-repair coupling factor;[Corynebacterium diphtheriae] Length = 1264 Score = 1300 bits (3364), Expect = 0.0 Identities = 682/1214 (56%), Positives = 845/1214 (69%), Gaps = 42/1214 (3%) Query: 2 TAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGP 61 + P A P +AGL+ +A T P + L+ + L + G AR + +ALA + P Sbjct: 5 SVPAAQPP--MLAGLLKVAATDPKIKGLLQHVGE--PHLHITGIDQARPWAIAALAHRAP 60 Query: 62 LLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHP 121 +LVVTATGREA+D++AELR + GE VA FP+WETLPHERLSPG D G A Sbjct: 61 VLVVTATGREAEDLSAELRAMLGEKVAWFPAWETLPHERLSPGADIAGQRARILSHIAD- 119 Query: 122 EDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDM 181 VVVTA R QP+ Q+ ++P+ L V E +E +LV AY VD+ Sbjct: 120 --------YSVVVTAARGFSQPIVSQVAGRDPLVLEVDSECSLEEATQQLVFRAYHHVDL 171 Query: 182 VGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVA 241 V +RGEFA RGGILD+F TA+HPVRVEFWGDE++E+R F VADQR+IP+ +VS + Sbjct: 172 VAKRGEFATRGGILDVFPTTAQHPVRVEFWGDEVSEIRGFQVADQRAIPDSDVSRVEVFP 231 Query: 242 CRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDH 301 REL +T ++ + + ++ ++LAK+++ IP+DGMEAL+P L Sbjct: 232 ARELPITPEIAQRAAELAVKFQGNP-----TLQELLAKISDSIPSDGMEALIPALVDQPM 286 Query: 302 ALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALG--G 359 L + + E T ++V PEK+RTR ADL T EFL A W AAMG D PV L Sbjct: 287 VTLAELMPENTHIVVVGPEKIRTRVADLQATDAEFLAAGWEAAAMGADGPVATRGLDLDA 346 Query: 360 SGFAELEQVQTAASSSGHPWWTLS-----QLSEESATELEVRAAPSARGHQKDIDDIFAM 414 S + E ++ A PWWT + + S+ LE P+ RG + ID + A+ Sbjct: 347 SSYRSYESLENTAQKHTMPWWTFAPPGMFEASDGDTLPLEFEPGPTPRGDLEQIDQMMAL 406 Query: 415 LRAHVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGV 474 L AH GG A + P G RMVER E IP + PG P LG V + + G+ Sbjct: 407 LLAHTRDGGAAAFIAPAQGAIKRMVERFKEQGIPTKVATPGWQPTLGEVTLYQAMSHAGL 466 Query: 475 IVPGAN---------LVVVTETNLTGNRATAVEG-KRLAAKRRNTVDPLALTAGDLVVHD 524 + P LVV+T+T+LTGNR + G KR AKRR+ VDPLAL GD VVH+ Sbjct: 467 VFPKVRKQPGKPALPLVVITKTDLTGNRVGDIAGAKRRPAKRRHRVDPLALKTGDYVVHE 526 Query: 525 QHGIGRFVEMVERTVGG----ARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQ 580 HGIGRF++M ER + +RREY+VLEYA++KRG +D+LYVPMDSLD LS+YVGG+ Sbjct: 527 THGIGRFLKMTERVIQSGDETSRREYIVLEYAASKRGQPADQLYVPMDSLDMLSKYVGGE 586 Query: 581 APALSRLGGSDWTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFG 640 P LS++GGSDW NTK KAR AVREIAGELV LYAKRQ++PGHAFAPD+PWQ EMED F Sbjct: 587 KPTLSKMGGSDWKNTKKKARAAVREIAGELVELYAKRQSAPGHAFAPDSPWQHEMEDNFP 646 Query: 641 FTETVDQLTAITEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT 700 + ET DQ+ AI VK DMEK PMDRV+ GDVGYGKTE+AVRAAFKAVQDG+QV VLVPT Sbjct: 647 YVETEDQMLAIDAVKADMEKPSPMDRVVVGDVGYGKTEVAVRAAFKAVQDGRQVVVLVPT 706 Query: 701 TLLADQHLQTFTDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGV 760 TLLA QHL TF +RMAGFPVT+KGLSRFT P+ES+ +++G+ADGSVD+VIGTHRLLQTGV Sbjct: 707 TLLAQQHLSTFEERMAGFPVTIKGLSRFTSPSESKEILKGLADGSVDIVIGTHRLLQTGV 766 Query: 761 RWKDLGLVVVDEEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILT 820 +WK+LGLV+VDEEQRFGVEHKEHIK+LR+HVDVLTMSATPIPRTLEMS+AGIREMSTILT Sbjct: 767 QWKNLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILT 826 Query: 821 PPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARV 880 PPE+R+P+LTYVG +DKQVAAA+RRELLRDGQ FYVHN+VS I+ A +R+LVPEAR+ Sbjct: 827 PPEDRHPILTYVGAQEDKQVAAAIRRELLRDGQVFYVHNKVSDIEKKARELRELVPEARI 886 Query: 881 VVAHGQMPEDLLERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQ 940 VVAHGQM E+LLE+TVQGFW RE+D+LVCTTIVETGLDI+NANTLIVE A GLSQLHQ Sbjct: 887 VVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQ 946 Query: 941 LRGRVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNV 1000 LRGRVGRSRERGYAYFLYP A LTE +YDRLATIAQNN+LGAGMAVA+KDLE+RGAGNV Sbjct: 947 LRGRVGRSRERGYAYFLYPKGATLTENSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNV 1006 Query: 1001 LGVEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKTVTTPEE-PKDVRIDLPVDAHLPPD 1059 LG +QSGH+AGVGFDLYVRLVGEAVEAYRA ADGK E+ PK++RIDLPVDAH+P D Sbjct: 1007 LGAQQSGHIAGVGFDLYVRLVGEAVEAYRALADGKVADATEQGPKEIRIDLPVDAHIPED 1066 Query: 1060 YIGSDXXXXXXXXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGI 1119 YI S+ +D +A VV+E+ DR+G +P +G+ Sbjct: 1067 YINSERLRLEVYRKLAASANDKDLALVVEEMKDRFGPVPHEVKRLLAVSRLRHLARATGL 1126 Query: 1120 TDVSAPSSATVRLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDGG-VGAPRIRD 1178 +D+ ++L P++L DS QVRLKR+ P YRA +Q+P P++G V ++RD Sbjct: 1127 SDIGV-QGTRIKLHPVELTDSKQVRLKRLAPSATYRAAAKAIQLPFPKEGAKVTDKQLRD 1185 Query: 1179 VELVQMVANLVTAL 1192 VEL+Q VA+ + + Sbjct: 1186 VELLQWVADFIAEM 1199 >tr|C5VBF1|C5VBF1_9CORY Tax_Id=553207 (mfd)SubName: Full=Transcription-repair coupling factor; EC=3.6.1.-;[Corynebacterium matruchotii ATCC 14266] Length = 1238 Score = 1293 bits (3346), Expect = 0.0 Identities = 683/1232 (55%), Positives = 858/1232 (69%), Gaps = 40/1232 (3%) Query: 3 APGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPL 62 AP AA+ ++GL+ A T P + LI+ D L++ AR + ALA PL Sbjct: 7 APTAATTPAMLSGLLKTAATDPKLKGLISHVGD--PTLSIATIDQARPWAIGALAHHTPL 64 Query: 63 LVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPE 122 LVVTATGREA+D+TAEL+ ++G+ VA FP+WETLPHERLSP D G A+ Sbjct: 65 LVVTATGREAEDLTAELKAMWGDQVAWFPAWETLPHERLSPAADVAGTRAKILHNLAN-- 122 Query: 123 DTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMV 182 LR+VVTA R + QP+ ++P++L+VG + F ++ LV AY VD+V Sbjct: 123 -------LRIVVTAARGVCQPILETNPGRDPLTLTVGHDYDFTDLTHHLVFKAYKHVDLV 175 Query: 183 GRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVAC 242 RRGEFA RGGI+D+F T EHP+R EFWGDE+T++R FSVADQR+ P+++ + Sbjct: 176 ARRGEFATRGGIIDIFPTTGEHPIRAEFWGDELTDLRAFSVADQRAFPDLDYPAVDVYPA 235 Query: 243 RELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRP---D 299 RELL+T+DV H EN ++ ++L K+A+ IP DGMEAL+PVL Sbjct: 236 RELLITDDVAGRAAELAVAH--RENP---TLQELLTKVADRIPADGMEALIPVLADLTAT 290 Query: 300 DHALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEAL-- 357 L + + GT V+ PEK+RTR ADL T EFL A W AAMG PVD L Sbjct: 291 PMRTLPELMPAGTHVVAVHPEKIRTRIADLQATDAEFLAAGWEAAAMGAAGPVDSRDLDL 350 Query: 358 GGSGFAELEQVQTAASSSGHPWWTLSQ--LSEESATELEVRAAPSARGHQKDIDDIFAML 415 S + + + A+ +G WW+++ + E A LE P+ RG I ++ ++L Sbjct: 351 SASSYRSYDSLVVGATKAGQSWWSVTPPGMGGEDALPLEFEPGPTPRGDLSQIGEMMSLL 410 Query: 416 RAHVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVI 475 AH GG A + P G RMV+R E I AA+ +PGA P+ G V + + G++ Sbjct: 411 LAHTMAGGRAAFIAPAPGAIKRMVDRFREQGIAAAVAQPGAEPQPGEVTLYQALSHAGLV 470 Query: 476 ------VPGAN---LVVVTETNLTGNRATAVEG-KRLAAKRRNTVDPLALTAGDLVVHDQ 525 +PGA LVVVTET++TGNR + G KR A+RR+ VDPLAL +GD VVH+ Sbjct: 471 FPKVRKLPGAEALPLVVVTETDVTGNRVGDIAGAKRRQARRRHRVDPLALKSGDYVVHET 530 Query: 526 HGIGRFVEMVERTVG----GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQA 581 HGIGRFV M ERT+ +RREY+VLEYA +RG +D+LYVPMDSLD LSRYVGG+ Sbjct: 531 HGIGRFVRMTERTITMGEETSRREYIVLEYAPTRRGQPADQLYVPMDSLDLLSRYVGGEK 590 Query: 582 PALSRLGGSDWTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGF 641 P LS++GGSDW NTK KAR AVREIA ELV LYAKR +PGHAFAPD+PWQ E+ED F F Sbjct: 591 PTLSKMGGSDWKNTKKKARAAVREIASELVELYAKRATAPGHAFAPDSPWQQELEDNFPF 650 Query: 642 TETVDQLTAITEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTT 701 ET DQ+ AI VK DME+ +PMDRVI GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTT Sbjct: 651 VETEDQMAAIAAVKQDMEQPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTT 710 Query: 702 LLADQHLQTFTDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVR 761 LLA QHL TF +RMAGFPVT+KGLSRFT ++++ ++ G+ DGSVD+VIGTHRLLQTGV+ Sbjct: 711 LLAQQHLATFAERMAGFPVTIKGLSRFTSASDAKEILSGLRDGSVDIVIGTHRLLQTGVQ 770 Query: 762 WKDLGLVVVDEEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTP 821 WK LGLVVVDEEQRFGVEHKEHIK++RSHVDVLTMSATPIPRTLEMS+AGIREMSTILTP Sbjct: 771 WKQLGLVVVDEEQRFGVEHKEHIKAMRSHVDVLTMSATPIPRTLEMSMAGIREMSTILTP 830 Query: 822 PEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVV 881 PE+R+P+LTYVG ++KQ+AAA+RRELLRDGQ F+VHN+VS I+ A +R LVPEAR+V Sbjct: 831 PEDRHPILTYVGAQEEKQIAAAIRRELLRDGQVFFVHNKVSDIEKKARELRNLVPEARIV 890 Query: 882 VAHGQMPEDLLERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQL 941 VAHGQM E++LERTVQGFW RE+D+LVCTTIVETGLDI+NANTLIVE A GLSQLHQL Sbjct: 891 VAHGQMSEEVLERTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQL 950 Query: 942 RGRVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVL 1001 RGRVGRSR RGYAYFLYP LTET+YDRLATIAQNN+LGAGMAVA+KDLE+RGAGNVL Sbjct: 951 RGRVGRSRSRGYAYFLYPKGTTLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVL 1010 Query: 1002 GVEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKTVT-TPEEPKDVRIDLPVDAHLPPDY 1060 G +QSGH+AGVGFDLYVRLVGEAV YRA ADGK V T + PK++RIDLPVDAH+P Y Sbjct: 1011 GAQQSGHIAGVGFDLYVRLVGEAVATYRALADGKPVDGTDQSPKEIRIDLPVDAHIPESY 1070 Query: 1061 IGSDXXXXXXXXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGIT 1120 I ++ TS++ + +V+E+ DRYG +P+ +GIT Sbjct: 1071 INAERLRLEVYQKLAASTSETDIRLIVEEMEDRYGPIPQEASRLLAVARLRHLARQAGIT 1130 Query: 1121 DVSAPSSATVRLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDG-GVGAPRIRDV 1179 D+ + +++ P++L DS QVRLKR++PG YRA +QV IP+ G V P++RDV Sbjct: 1131 DIGVQGN-RIKIHPVELLDSQQVRLKRLFPGATYRAVAKAIQVSIPKAGTTVTDPKLRDV 1189 Query: 1180 ELVQMVANLVTALAGKPQQDIGRTSLSEDDAA 1211 +L+Q VA+ ++A+ + D+ + E+ A Sbjct: 1190 DLIQWVADFLSAMFNLDKVDVRGGHIGEEKPA 1221 >tr|C2CLV5|C2CLV5_CORST Tax_Id=525268 (mfd)SubName: Full=Transcription-repair coupling factor;[Corynebacterium striatum ATCC 6940] Length = 1220 Score = 1283 bits (3320), Expect = 0.0 Identities = 677/1213 (55%), Positives = 849/1213 (69%), Gaps = 40/1213 (3%) Query: 13 IAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVTATGREA 72 +AGL+ +A + P + L + + L + G AR + LA Q P+LVVTATGREA Sbjct: 6 LAGLLKVAASDPKLKGLATQVGE--PHLHITGIDQARPWAIGTLANQAPVLVVTATGREA 63 Query: 73 DDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLGPPLRV 132 +D+TAEL + G+ VA FP+WETLPHERLSPG D VG A + LRV Sbjct: 64 EDLTAELTAMMGDKVAQFPAWETLPHERLSPGADIVGRRAQVLHRIAEGK-------LRV 116 Query: 133 VVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVRG 192 VVTA R QP+ + + P+SL+ EI + ++++L AY VDMV +RGE+AVRG Sbjct: 117 VVTAARGYSQPILKNVEGRSPISLAEDMEIELEAIVSQLEFRAYKHVDMVAKRGEYAVRG 176 Query: 193 GILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTEDVX 252 GILD+F T ++PVRVEFWGDEIT++R FSVADQR+IPEIEV + REL +T+DV Sbjct: 177 GILDVFPTTLDYPVRVEFWGDEITDIRQFSVADQRAIPEIEVGAVDIFPARELPITDDVA 236 Query: 253 XXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQLAEGT 312 +HP + +++++L K+ E IP DGMEALL VL L + + EGT Sbjct: 237 KRAQELALKHPGN-----AALVELLTKVGEHIPADGMEALLAVLSDAPLITLPEFMPEGT 291 Query: 313 PVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALG--GSGFAELEQVQT 370 VL+ PEK+RTR ADL T EFL A W AAMG D P+ E L + + E ++ Sbjct: 292 HVLLVAPEKIRTRIADLESTDAEFLAAGWEAAAMGADGPLAAEGLDTEAASYRSYESLEA 351 Query: 371 AASSSGHPWWTLSQ----LSEESAT-ELEVRAAPSARGHQKDIDDIFAMLRAHVSTGGYA 425 +++ P WT + +++E+ T LE P+ RG K+ID + A L AH GG A Sbjct: 352 TCANANLPLWTFAPPGMFMADEAQTLPLEYEPGPTPRGDVKEIDAMMAQLLAHTRDGGRA 411 Query: 426 VMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN----- 480 + P G RMVER E I + PG P G V + + G++ P A Sbjct: 412 AFIAPAQGAIKRMVERFVEKGIRTKVATPGWEPTPGEVTLYQALSHAGLVFPKARSQGGA 471 Query: 481 ------LVVVTETNLTGNRATAVEG-KRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVE 533 LVVVTET+LTGNR + G KR AKRRN VDPLAL GD VVH+ HGIGRF++ Sbjct: 472 TKEALPLVVVTETDLTGNRVGDIAGAKRRPAKRRNRVDPLALKQGDHVVHETHGIGRFLK 531 Query: 534 MVERTVGG----ARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGG 589 M ERT+ +RREY+VLEYA++KRG +D+L+VPMDSLD LS+Y GG+ P LS++GG Sbjct: 532 MAERTIQSGDETSRREYIVLEYAASKRGQPADQLWVPMDSLDLLSKYTGGEKPTLSKMGG 591 Query: 590 SDWTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLT 649 SDW NTK KAR AVREIAGELV LYAKRQASPGH FAPDTPWQAEMED F + ET DQ+ Sbjct: 592 SDWKNTKKKARAAVREIAGELVELYAKRQASPGHQFAPDTPWQAEMEDNFPYIETEDQML 651 Query: 650 AITEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQ 709 AI VK DME ++PMDRV+ GDVGYGKTE+AVRAAFKAVQDG QVAVLVPTTLLA QH Sbjct: 652 AIDAVKEDMESTVPMDRVVVGDVGYGKTEVAVRAAFKAVQDGMQVAVLVPTTLLAQQHAD 711 Query: 710 TFTDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVV 769 TF +RM GFPV ++ LSRFT +++ ++ G+ADGSVD+VIGTHRLLQTGV WK+LGL+V Sbjct: 712 TFRERMTGFPVNIQVLSRFTSTKDAKEIVSGLADGSVDIVIGTHRLLQTGVHWKNLGLIV 771 Query: 770 VDEEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVL 829 VDEEQRFGVEHKEHIK+L++ VDVLTMSATPIPRTLEMS+AGIREMSTILTPPE+R+PVL Sbjct: 772 VDEEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVL 831 Query: 830 TYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPE 889 TYVG ++DKQ+AAA+RRELLRDGQ F++HN+VS I+ A +R+LVPEAR+VVAHGQM E Sbjct: 832 TYVGAYEDKQIAAAIRRELLRDGQTFFIHNKVSDIEKKARELRELVPEARIVVAHGQMNE 891 Query: 890 DLLERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSR 949 + LE+TVQGFW RE+D+LVCTTIVETGLDI+NANTLIVE A GLSQLHQLRGRVGRSR Sbjct: 892 EALEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSR 951 Query: 950 ERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHV 1009 ERGYAYFLYP A LTET+YDRLATIAQNN+LGAGMAVA+KDLE+RGAGNVLG +QSGH+ Sbjct: 952 ERGYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHI 1011 Query: 1010 AGVGFDLYVRLVGEAVEAYRAAADGKT-VTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXX 1068 AGVGFDLYVRLVGEAVE ++A A G+ T + PK++RIDLPVDAH+P DYI S+ Sbjct: 1012 AGVGFDLYVRLVGEAVETFKALARGEVPKATDDGPKEIRIDLPVDAHIPEDYINSERLRL 1071 Query: 1069 XXXXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSA 1128 ++ + V+E+ DRYG LP+P +G++D++ Sbjct: 1072 EVYRKLAASKDNADLQLAVEEMEDRYGPLPQPVTRLLAVARLRHQARRAGVSDITV-QGT 1130 Query: 1129 TVRLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDG-GVGAPRIRDVELVQMVAN 1187 +++ P++LPDS QVRLKR++PG +YRA +Q+ P+ G V P++RDVEL+Q VA+ Sbjct: 1131 RIKVHPVELPDSKQVRLKRLFPGSNYRAAAKAIQLNFPKAGRNVTDPKLRDVELLQWVAD 1190 Query: 1188 LVTALAGKPQQDI 1200 ++ + Q D+ Sbjct: 1191 FLSQMFDIDQADV 1203 >tr|C4LHL4|C4LHL4_CORK4 Tax_Id=645127 SubName: Full=Transcription-repair coupling factor;[Corynebacterium kroppenstedtii] Length = 1281 Score = 1283 bits (3319), Expect = 0.0 Identities = 683/1248 (54%), Positives = 863/1248 (69%), Gaps = 55/1248 (4%) Query: 12 PIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVTATGRE 71 P+AG+V LAL +P Q ++A + ++ + ARS+VA A+A++ +++VTAT RE Sbjct: 41 PLAGVVQLALQSPKLQGVLASVGEPRLHISAID--EARSWVARAIAEKSVVVIVTATSRE 98 Query: 72 ADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLGPPLR 131 A D+TAELR + G+AVA+FP+WETLPHERLSPG +TVGA AHP D P+R Sbjct: 99 AQDLTAELRDMMGDAVAMFPAWETLPHERLSPGSETVGARLKVLRRLAHPHDIPGEQPIR 158 Query: 132 VVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVR 191 +VV RS +QP+ LG +EP+ L+ ++ + RL E+ Y VD+VG+RGEFAVR Sbjct: 159 IVVAPARSFIQPIMKGLGEREPIILAEDTDV--TGIATRLAEMGYQHVDLVGKRGEFAVR 216 Query: 192 GGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTEDV 251 GG++D+F TAE PVR E WGDEI+++R FSV DQR+I + + CREL + + V Sbjct: 217 GGVVDIFPSTAELPVRAELWGDEISDLRAFSVGDQRTIENFDPGAVPVYPCRELRIDDAV 276 Query: 252 XXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQLAEG 311 H ++ ++ D L K++EG+ +GME+L+PVL L +++A Sbjct: 277 RARAEKMARTHASN-----ATLADALTKISEGVAVEGMESLIPVLFDGPMVTLPEEVAAA 331 Query: 312 TP-----VLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGG------- 359 P VLV PEKV+ RA DLI TG+EF++A W AAMG ++P+D AL Sbjct: 332 DPSVTTTVLVMSPEKVQRRADDLIATGKEFVKAGWEAAAMGAESPIDTAALAEAEDGNDD 391 Query: 360 -----SGFAELEQVQTAASSSGHPWWT------LSQLSEESATELEVRAAPSARGHQKDI 408 S + L ++ A G WWT L S EL+ P +G D+ Sbjct: 392 LNVDQSAYRSLGAMEKTAEHHGLSWWTCAPPGFLGSAEASSTLELDFSTGPQPKGKPGDV 451 Query: 409 DDIFAMLRAHVSTGGYAVMVEPGTGTAHRMVERLAESDI---PAAMLEPGAAPKLGVVGV 465 + + L HV+ GG V +A RM R E+ I P A + +AP G V Sbjct: 452 EKAMSELHDHVAHGGRLVFTALTPASAQRMSGRFREAGIGVTPDADPQNPSAP--GKATV 509 Query: 466 LKGPLRDGVIVPGAN----LVVVTETNLTGNRATAV-EGKRLAAKRRNTVDPLALTAGDL 520 ++ L G+++P + L+VV ET+ TGNR A +G+R ++RN VDPL+L GDL Sbjct: 510 IRAVLHGGLVIPHVDDARPLLVVAETDFTGNRIVAYGDGRRRPWRKRNRVDPLSLNPGDL 569 Query: 521 VVHDQHGIGRFVEMVERTVG----GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRY 576 VVH+ HGIGRFV+M ERTVG RREY+VLEYA +KRGG +D LYVPMDSLD LSRY Sbjct: 570 VVHETHGIGRFVKMQERTVGKGADATRREYMVLEYAPSKRGGAADHLYVPMDSLDLLSRY 629 Query: 577 VGGQAPALSRLGGSDWTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEME 636 VGG+ P+LS++GGSDW NTK KAR AVR+IA +LV LYAKRQA+PG+AF+PDTPWQ EME Sbjct: 630 VGGENPSLSKMGGSDWKNTKKKARAAVRDIAADLVQLYAKRQAAPGYAFSPDTPWQREME 689 Query: 637 DAFGFTETVDQLTAITEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAV 696 D F FTET DQ AI VK DMEK +PMDRVI GDVGYGKTE+AVRAAFKAVQDGKQV + Sbjct: 690 DNFPFTETEDQYNAIEAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVL 749 Query: 697 LVPTTLLADQHLQTFTDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLL 756 LVPTTLLA QH TF++RM GFP+T++ LSRFT P ++R V+ G+A+G VD+VIGTHRLL Sbjct: 750 LVPTTLLAQQHFATFSERMEGFPITIRQLSRFTTPKQAREVLTGLAEGQVDIVIGTHRLL 809 Query: 757 QTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMS 816 QTGV+WK+LGLV+VDEEQRFGVEHKEHIK+LRSHVD+LTMSATPIPRTLEMS+AGIR+MS Sbjct: 810 QTGVQWKNLGLVIVDEEQRFGVEHKEHIKALRSHVDMLTMSATPIPRTLEMSMAGIRDMS 869 Query: 817 TILTPPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVP 876 TILTPPE+R+PVLTYVG +DKQ+AAA+RRELLRDGQ FYVHNRV SI+ A IR+LVP Sbjct: 870 TILTPPEDRHPVLTYVGVQEDKQIAAAIRRELLRDGQVFYVHNRVRSIEQVAQHIRELVP 929 Query: 877 EARVVVAHGQMPEDLLERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLS 936 EARVVVAHGQM ED LE TV+GFW RE+D+LVCTTIVETGLDISNANTLIVE A GL+ Sbjct: 930 EARVVVAHGQMNEDQLENTVEGFWDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLA 989 Query: 937 QLHQLRGRVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRG 996 QLHQLRGRVGRSRERGYAYFLYPP LTET+YDRL+TIAQNN+LGAGMAVA+KDLE+RG Sbjct: 990 QLHQLRGRVGRSRERGYAYFLYPPSQTLTETSYDRLSTIAQNNDLGAGMAVAMKDLEMRG 1049 Query: 997 AGNVLGVEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKTVT-TPEEPKDVRIDLPVDAH 1055 AGNVLG EQSGH+AGVGFDLYVRLVGEAVEA++A ADGK + + +E K+ RID+ VDAH Sbjct: 1050 AGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFKAMADGKPIDGSDKENKETRIDINVDAH 1109 Query: 1056 LPPDYIGSDXXXXXXXXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXX 1115 +P YI S+ ++ + V EL+DRYG P+ Sbjct: 1110 IPTSYIASERLRLAAYRDLAQAKNEEALQNVRAELVDRYGQPPQEIDRLLAVARLRMVCR 1169 Query: 1116 XSGITDVSA--PSSATVRLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDG-GVG 1172 G+TDV A + A + +P++LPDS +VRL R+YPG YRATT V VP P+ G G+ Sbjct: 1170 ECGVTDVVATGANKAAISFSPIELPDSGRVRLGRLYPGAQYRATTHNVVVPAPKKGRGIR 1229 Query: 1173 APRIRDVELVQMVANLVTALAGKPQQDIGRTSLSEDDAAATASGKERQ 1220 A ++D EL+Q A+++T+L GKP +++ + + D TA GK Q Sbjct: 1230 AQAVKDEELLQWCADVMTSLLGKPHREVA-SGVQPD----TAGGKSHQ 1272 >tr|C0E7P9|C0E7P9_9CORY Tax_Id=566549 SubName: Full=Putative uncharacterized protein;[Corynebacterium matruchotii ATCC 33806] Length = 1223 Score = 1283 bits (3319), Expect = 0.0 Identities = 675/1222 (55%), Positives = 852/1222 (69%), Gaps = 40/1222 (3%) Query: 13 IAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVTATGREA 72 ++GL+ A T P + LI+ D L++ A+ + ALA PLLVVTATGREA Sbjct: 2 LSGLLKTAATDPKLKGLISHVGD--PTLSIATIDQAQPWAIGALAHHTPLLVVTATGREA 59 Query: 73 DDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLGPPLRV 132 +D+TAEL+ ++G+ VA FP+WETLPHERLSP D G A+ LR+ Sbjct: 60 EDLTAELKAMWGDQVAWFPAWETLPHERLSPAADVAGTRAKILHNLAN---------LRI 110 Query: 133 VVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVRG 192 VVTA R + QP+ ++P++L+VG + F ++ LV AY VD+V RRGEFA RG Sbjct: 111 VVTAARGVCQPILETTPGRDPLTLTVGHDYDFTDLTHHLVFKAYKHVDLVARRGEFATRG 170 Query: 193 GILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTEDVX 252 GI+D+F T EHP+R EFWGDE+T++R FSVADQR+ P+++ T+ RELL+T++V Sbjct: 171 GIIDIFPTTGEHPIRAEFWGDELTDLRAFSVADQRAFPDLDYPTVDVYPARELLITDNVA 230 Query: 253 XXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRP---DDHALLTDQLA 309 H EN ++ ++L K+A+ IP DGMEAL+PVL L + + Sbjct: 231 GRAAELAVAH--RENP---TLQELLTKIADRIPADGMEALIPVLADLTATPMRTLPELML 285 Query: 310 EGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEAL--GGSGFAELEQ 367 GT V+ PEK+RTR ADL T EFL A W AAMG PVD L S + + Sbjct: 286 AGTHVVAVHPEKIRTRIADLQATDAEFLAAGWEAAAMGAAGPVDSRDLDLSASSYRSYDS 345 Query: 368 VQTAASSSGHPWWTLSQ--LSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVSTGGYA 425 + A+ +G WW+++ + E A LE P+ RG I ++ ++L AH GG A Sbjct: 346 LVLGATKAGQSWWSITPPGMGGEDALPLEFEPGPTPRGDLSQIGEMMSLLLAHTMAGGRA 405 Query: 426 VMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVI------VPGA 479 + P G RM +R E I A + +PGA P+ G V + + G++ +PGA Sbjct: 406 AFIAPAPGAIKRMADRFREQGIAATVAQPGAEPQPGEVTLYQALSHAGLVFPKVRKLPGA 465 Query: 480 N---LVVVTETNLTGNRATAVEG-KRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMV 535 LVVVTET++TGNR + G KR A+RR+ VDPLAL +GD VVH+ HGIGRFV M Sbjct: 466 EALPLVVVTETDVTGNRVGDIAGAKRRQARRRHRVDPLALKSGDYVVHETHGIGRFVRMT 525 Query: 536 ERTVG----GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSD 591 ERT+ +RREY+VLEYA +RG +D+LYVPMDSLD LSRYVGG+ P LS++GGSD Sbjct: 526 ERTITMGEETSRREYIVLEYAPTRRGQPADQLYVPMDSLDLLSRYVGGEKPTLSKMGGSD 585 Query: 592 WTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAI 651 W NTK KAR AVREIA ELV LYAKR +PGHAFAPD+PWQ E+ED F F ET DQ+ AI Sbjct: 586 WKNTKKKARAAVREIASELVELYAKRATAPGHAFAPDSPWQQELEDNFPFVETEDQMAAI 645 Query: 652 TEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 711 VK DME+ +PMDRVI GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTTLLA QHL TF Sbjct: 646 AAVKQDMEQPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHLATF 705 Query: 712 TDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVD 771 +RMAGFPVT++GLSRFT ++++ ++ G+ DGSVD+VIGTHRLLQTGV+WK LGLVVVD Sbjct: 706 AERMAGFPVTIRGLSRFTSASDAKEILSGLRDGSVDIVIGTHRLLQTGVQWKQLGLVVVD 765 Query: 772 EEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 831 EEQRFGVEHKEHIK++RSHVDVLTMSATPIPRTLEMS+AGIREMSTILTPPE+R+P+LTY Sbjct: 766 EEQRFGVEHKEHIKAMRSHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPILTY 825 Query: 832 VGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDL 891 VG ++KQ+AAA+RRELLRDGQ F+VHN+VS I+ A +R LVPEAR+VVAHGQM E++ Sbjct: 826 VGAQEEKQIAAAIRRELLRDGQVFFVHNKVSDIEKKARELRNLVPEARIVVAHGQMSEEV 885 Query: 892 LERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 951 LERTVQGFW RE+D+LVCTTIVETGLDI+NANTLIVE A GLSQLHQLRGRVGRSR R Sbjct: 886 LERTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRSR 945 Query: 952 GYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAG 1011 GYAYFLYP LTET+YDRLATIAQNN+LGAGMAVA+KDLE+RGAGNVLG +QSGH+AG Sbjct: 946 GYAYFLYPKGTTLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAG 1005 Query: 1012 VGFDLYVRLVGEAVEAYRAAADGKTVT-TPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 VGFDLYVRLVGEAV YRA ADGK V T + PK++RIDLPVDAH+P YI ++ Sbjct: 1006 VGFDLYVRLVGEAVATYRALADGKPVDGTDQSPKEIRIDLPVDAHIPESYINAERLRLEV 1065 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 TS++ + +V+E+ DRYG +P+ +GITD+ + + Sbjct: 1066 YRKLAASTSETDIRLIVEEMEDRYGPIPQEASRLLAVARLRHLARQAGITDIGVHGN-RI 1124 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDG-GVGAPRIRDVELVQMVANLV 1189 ++ P++L DS QVRLKR++PG YRA +QV IP+ G V P++RDV+L+Q VA+ + Sbjct: 1125 KIHPVELLDSQQVRLKRLFPGATYRAVAKAIQVSIPKAGTTVTDPKLRDVDLIQWVADFL 1184 Query: 1190 TALAGKPQQDIGRTSLSEDDAA 1211 +A+ + D+ + E+ A Sbjct: 1185 SAMFNLDKVDVRGGHIGEEKPA 1206 >tr|C2BQC5|C2BQC5_9CORY Tax_Id=525264 SubName: Full=Possible transcription-repair coupling factor;[Corynebacterium pseudogenitalium ATCC 33035] Length = 1213 Score = 1278 bits (3308), Expect = 0.0 Identities = 672/1203 (55%), Positives = 842/1203 (69%), Gaps = 41/1203 (3%) Query: 13 IAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVTATGREA 72 +AGL+ +A + P + +I+ + +L + G +R + ALA P+LVVTAT REA Sbjct: 6 LAGLLKVAASDPKLKGMISHVGE---DLHITGLDQSRPWALGALAHHAPVLVVTATSREA 62 Query: 73 DDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLGPPLRV 132 +D+TAEL + GE VA+FPSWETLPHERLSPGVD +G H D+ L+V Sbjct: 63 EDLTAELTAMLGEKVAMFPSWETLPHERLSPGVDIIGRRAEVL----HNLDS-----LQV 113 Query: 133 VVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVRG 192 +VTA R L QP+ ++ + PV L E FDEV+ L AY VDMV +RGE+A RG Sbjct: 114 IVTAARGLSQPILQEVEGRAPVHLEEDHEYDFDEVVRELEFRAYKHVDMVAKRGEYATRG 173 Query: 193 GILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTEDVX 252 GI+D+F T ++PVRVEFWGDEIT++R FSVADQR+IPEIEV + REL +T+ + Sbjct: 174 GIIDIFPTTLDYPVRVEFWGDEITDIRQFSVADQRTIPEIEVGRVDIFPARELPITDAIA 233 Query: 253 XXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQLAEGT 312 +HP + +++++L K++E IP +GMEALLP L L + L T Sbjct: 234 KRAADLAVKHPGNP-----ALVELLTKVSEHIPAEGMEALLPALSDAPMITLPEFLRPTT 288 Query: 313 PVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALG--GSGFAELEQVQT 370 V++ PEK+R R ADL KT EFL A W AAMG D P+ E L S + E ++ Sbjct: 289 HVVMVGPEKIRRRVADLEKTDAEFLAAGWEAAAMGADGPLATEGLDTEASSYRSYESLEV 348 Query: 371 AASSSGHPWWTLSQ-----LSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVSTGGYA 425 + S S P WT S EE LE P+ RG+ ++ID + A L AH + GG A Sbjct: 349 SISESSLPLWTFSPPGMLAAPEEETLPLEFEPGPTPRGNIEEIDAMMAQLLAHTNAGGRA 408 Query: 426 VMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN----- 480 + P G RMV+R AE I + PG P G V + + G++ P Sbjct: 409 AFIAPAQGAIKRMVDRFAEKGIRTKVATPGWEPTAGEVTLYQALSHAGLVFPKVKKPKDA 468 Query: 481 ----LVVVTETNLTGNRATAV-EGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMV 535 LVVVTET+LTGNR + E KR AKRRN VDPLAL GD VVH+ HGIG+F++M Sbjct: 469 EALPLVVVTETDLTGNRVGDIAEAKRRPAKRRNKVDPLALKQGDFVVHETHGIGKFLKMA 528 Query: 536 ERTVGG----ARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSD 591 ERT+ +RREY+VLEYA +KRG +D+L+VPMDSLD LS+Y GG++P LS++GGSD Sbjct: 529 ERTIQSGDETSRREYIVLEYAPSKRGQPADQLWVPMDSLDLLSKYTGGESPHLSKMGGSD 588 Query: 592 WTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAI 651 W NTK KAR AVREIAGELV LYAKRQA+PGH F+PD PWQAEMED F F ET DQ+ AI Sbjct: 589 WKNTKKKARAAVREIAGELVELYAKRQAAPGHQFSPDNPWQAEMEDNFPFVETEDQMLAI 648 Query: 652 TEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 711 VK DME ++PMDRV+ GDVGYGKTE+A+RAAFKAVQDG QVAVLVPTTLLA QH TF Sbjct: 649 DAVKHDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGMQVAVLVPTTLLAQQHFDTF 708 Query: 712 TDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVD 771 ++RM GFPV ++ LSRFT E++ + +G+ADGSVD+V+GTHRLLQTGV WK+LGL+VVD Sbjct: 709 SERMTGFPVKIEVLSRFTSKKEAKDIFKGLADGSVDIVVGTHRLLQTGVHWKNLGLIVVD 768 Query: 772 EEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 831 EEQRFGVEHKEHIK+L++ VDVLTMSATPIPRTLEMS+AGIREMSTILTPPE+R+PVLTY Sbjct: 769 EEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTY 828 Query: 832 VGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDL 891 VG ++DKQVAAA+RRELLRDGQ F++HN+VS I+ A +R LVPEARVVVAHGQM E++ Sbjct: 829 VGAYEDKQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPEARVVVAHGQMNEEV 888 Query: 892 LERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 951 LE+TVQGFW RE+D+LVCTTIVETGLDI+NANTLIVE A GLSQLHQLRGRVGRSRER Sbjct: 889 LEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRER 948 Query: 952 GYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAG 1011 GYAYFLYP A LTET+YDRLATIAQNN+LGAGMAVA+KDLE+RGAGNVLG +QSGH+AG Sbjct: 949 GYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAG 1008 Query: 1012 VGFDLYVRLVGEAVEAYRAAADGKTVT-TPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 VGFDLYVRLVGEAVE +++ A G+ T T E PK++RIDLPVDAH+P YI S+ Sbjct: 1009 VGFDLYVRLVGEAVETFKSLARGEAPTVTDEGPKEIRIDLPVDAHIPESYIDSERLRLEV 1068 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 + + AV++E+ DR+G LP+ +GI+D++ + Sbjct: 1069 YRKLAASQDNDDLKAVIEEMEDRFGPLPQEVLRLLSVARLRHQARRAGISDITV-QGTRI 1127 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDG-GVGAPRIRDVELVQMVANLV 1189 + P++LPDS QVRLKR+YPG +RA + VP P+ G V +P++RD EL+Q A+ + Sbjct: 1128 KFHPVELPDSKQVRLKRLYPGSSFRAAAKAINVPFPKAGRNVTSPKLRDTELIQWAADFL 1187 Query: 1190 TAL 1192 +AL Sbjct: 1188 SAL 1190 >tr|Q4JU44|Q4JU44_CORJK Tax_Id=306537 (mfd)SubName: Full=Transcription-repair coupling factor;[Corynebacterium jeikeium] Length = 1258 Score = 1278 bits (3307), Expect = 0.0 Identities = 694/1252 (55%), Positives = 847/1252 (67%), Gaps = 57/1252 (4%) Query: 7 ASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVT 66 ++P +AGL+ A + ++ + L + P A F LAQ+ PLLVVT Sbjct: 22 SNPAPSLAGLLKAAAQDGKLRGMMTHLGE--GALHMQAPEGAWPFAVGTLAQRTPLLVVT 79 Query: 67 ATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRL 126 ATGR+A D+T LR + G+ V LFPSWETLPHE+LSP V+TV ++ Sbjct: 80 ATGRQAQDLTTVLRYMLGDRVELFPSWETLPHEKLSPAVETVSTRMRVLRRLHEGDEN-- 137 Query: 127 GPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRG 186 L+VVV R+ +QP+ LG PV L VG+EI FD + RL EL YT VD+VG+RG Sbjct: 138 ---LQVVVAPTRAAVQPVQSNLGEVTPVRLKVGEEIDFDSLTHRLQELGYTHVDVVGKRG 194 Query: 187 EFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELL 246 FA+RGGI+D+F T E PVRV+FWGDEITE+R FSV DQR+IP +E ++ ACREL+ Sbjct: 195 HFAIRGGIVDIFPATEEMPVRVDFWGDEITEVRAFSVGDQRTIPGVEPDQVMVYACRELI 254 Query: 247 LTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTD 306 +T++V ++ A E+ + ++L K+++ I GME+L+P L + L + Sbjct: 255 VTDEVASKA-----KNLAQEHAGNAELAEILDKISQKIQVQGMESLIPALHTAELVALPE 309 Query: 307 QLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGSGFAELE 366 + EGT LV P V RA DL +TG++FLEA W VAAMG AP++ G + ++ Sbjct: 310 LMPEGTHTLVMAPAAVERRAHDLRETGQQFLEAGWDVAAMGGSAPME-----GVAYLSID 364 Query: 367 QVQTAASSSGHPWWTLSQLS-------EESATELEVRAAPSARGHQKDIDDIFAMLRAHV 419 VQ G PWWTLS L EL +AP G + I + + +R V Sbjct: 365 AVQKVQQKLGRPWWTLSTLGMADFDADTSDVLELNYDSAPRPHGEMEAIGAVMSDIRKRV 424 Query: 420 STGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGV----------------- 462 +GG P A RM+ R E+ I A + + G+ Sbjct: 425 ESGGRVAFAAPTPAVAARMLRRFQEAGIAAEAIGVDLSGSRGLGRIKKSKHTTADEPAPH 484 Query: 463 -VGVLKGPLRDGVIVPGA------NLVVVTETNLTGNRATA-VEGKRLAAKRRNTVDPLA 514 V + +G++ P A +L+ TET+LTGNR A GKR AK+RN VDPLA Sbjct: 485 QVSIYHAVAYEGLVFPFAGDDKRPSLLFFTETDLTGNRVDAKATGKRKPAKKRNRVDPLA 544 Query: 515 LTAGDLVVHDQHGIGRFVEMVERTVG----GARREYLVLEYASAKRGGGSDKLYVPMDSL 570 L GDLVVHD HGIG+FV+M ERTVG +RREYLVLEYA +KRGG D+LYVPMD L Sbjct: 545 LEPGDLVVHDSHGIGKFVKMTERTVGKGPDASRREYLVLEYAPSKRGGPGDQLYVPMDQL 604 Query: 571 DQLSRYVGGQAPALSRLGGSDWTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTP 630 D LSRYVGG+ PALS++GG+DW NTK KAR AVREIAGELV LYA RQA+PG+AFA DTP Sbjct: 605 DMLSRYVGGEKPALSKMGGADWKNTKRKARGAVREIAGELVQLYASRQAAPGYAFAADTP 664 Query: 631 WQAEMEDAFGFTETVDQLTAITEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQD 690 WQ EMEDAF FTET DQ AI VK DMEK +PMDRVI GDVGYGKTE+AVRAAFKAVQ Sbjct: 665 WQREMEDAFPFTETEDQYNAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQS 724 Query: 691 GKQVAVLVPTTLLADQHLQTFTDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVI 750 GKQVAVLVPTTLLA QH TF++RM FP T+K LSRFT PAES+ VI GMADG+VD+VI Sbjct: 725 GKQVAVLVPTTLLAQQHYNTFSERMQDFPTTIKELSRFTTPAESKKVIAGMADGTVDIVI 784 Query: 751 GTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLA 810 GTHRLLQTGV WK+LGL++VDEEQRFGVEHKEHIKSLR+HVDVLTMSATPIPRTLEMS+A Sbjct: 785 GTHRLLQTGVHWKNLGLIIVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMA 844 Query: 811 GIREMSTILTPPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAAR 870 GIREMSTILTPPE+R+PVLTYVG +DK VAAA+RRELLRDGQ FYVHN+V SI+ TAA Sbjct: 845 GIREMSTILTPPEDRHPVLTYVGAQEDKHVAAAIRRELLRDGQVFYVHNKVRSIEQTAAD 904 Query: 871 IRKLVPEARVVVAHGQMPEDLLERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERA 930 IR+LVPEARVVVAHGQM E+ LE TV+GFW REFD+LVCTTIVETGLDI+NANTLIVE A Sbjct: 905 IRRLVPEARVVVAHGQMSEEQLETTVKGFWDREFDVLVCTTIVETGLDIANANTLIVENA 964 Query: 931 DTFGLSQLHQLRGRVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALK 990 GLSQLHQLRGRVGRSRERGYAYFLYP LTET+YDRL TIAQNN+LGAGMAVA+K Sbjct: 965 HHMGLSQLHQLRGRVGRSRERGYAYFLYPKGEVLTETSYDRLTTIAQNNDLGAGMAVAMK 1024 Query: 991 DLEIRGAGNVLGVEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKTVT-TPEEPKDVRID 1049 DLE+RGAGNVLG EQSGH+AGVGFDLYVRLVGEAVEA+RA ADGK V EE K++RID Sbjct: 1025 DLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFRAMADGKPVDGREEEKKEIRID 1084 Query: 1050 LPVDAHLPPDYIGSDXXXXXXXXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXX 1109 LPVDAH+P +YI S+ + + V++EL DRYG PE Sbjct: 1085 LPVDAHIPAEYIASERLRLEAYRKFAEVQDEEQIEKVLEELRDRYGKPPEQIQMLAVLSR 1144 Query: 1110 XXXXXXXSGITDVSAPSSATVRLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDG 1169 +T+V + + + +P++L DS QVRLKR++P +YRATT V +P P+ G Sbjct: 1145 LRLLCRDLQVTEV-VTTGSKISFSPIELQDSTQVRLKRLFPAANYRATTKIVLIPAPKRG 1203 Query: 1170 -GVGAPRIRDVELVQMVANLVTALAGKPQQDI-GRTSLSEDDAAATASGKER 1219 G+ A +RD ELVQ A+ +T LAG P +++ G D + SGK++ Sbjct: 1204 QGMRAVPLRDTELVQWCADALTQLAGIPIRNMAGGAGRGSDKGSDKGSGKDK 1255 >tr|C6RB20|C6RB20_9CORY Tax_Id=553206 (mfd)SubName: Full=Transcription-repair coupling factor; EC=3.6.1.-;[Corynebacterium tuberculostearicum SK141] Length = 1212 Score = 1277 bits (3305), Expect = 0.0 Identities = 672/1203 (55%), Positives = 842/1203 (69%), Gaps = 41/1203 (3%) Query: 13 IAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVTATGREA 72 +AGL+ +A + P + +I+ + +L + G +R + LA P+LVVTAT REA Sbjct: 6 LAGLLKVAASDPKLKGMISHVGE---DLHITGLDQSRPWALGTLAHHAPVLVVTATSREA 62 Query: 73 DDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLGPPLRV 132 +D+TAEL + GE VA+FP+WETLPHERLSPGVD +G H D+ L+V Sbjct: 63 EDLTAELTAMLGEKVAMFPAWETLPHERLSPGVDIIGRRAEVL----HNLDS-----LQV 113 Query: 133 VVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVRG 192 +VTA R L QP+ ++ + PV L E FDEV+ L AY VDMV +RGE+A RG Sbjct: 114 IVTAARGLSQPILQEVEGRAPVHLEEDHEYDFDEVVRELEFRAYKHVDMVAKRGEYATRG 173 Query: 193 GILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTEDVX 252 GI+D+F T ++PVRVEFWGDEIT++R FSVADQR+IPEIEV + REL +T+ + Sbjct: 174 GIIDIFPTTLDYPVRVEFWGDEITDIRQFSVADQRTIPEIEVGRVDIFPARELPITDAIA 233 Query: 253 XXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQLAEGT 312 +HP + +++++L K++E IP +GMEALLP L L + L T Sbjct: 234 KRAADLAVKHPGNP-----ALVELLTKVSELIPAEGMEALLPALSDAPMITLPEFLRPTT 288 Query: 313 PVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALG--GSGFAELEQVQT 370 V++ PEK+R R ADL KT EFL A W AAMG D P+ E L S + E ++ Sbjct: 289 HVVMVGPEKIRRRVADLEKTDAEFLAAGWEAAAMGADGPLATEGLDTEASSYRSYESLEV 348 Query: 371 AASSSGHPWWTLSQ-----LSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVSTGGYA 425 + S S P WT S EE LE P+ RG+ ++ID + A L AH + GG A Sbjct: 349 SISESSLPLWTFSPPGMLAAPEEETLPLEFEPGPTPRGNIEEIDAMMAQLLAHTNAGGRA 408 Query: 426 VMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN----- 480 + P G RMV+R AE I + PG P G V + + G++ P Sbjct: 409 AFIAPAQGAIKRMVDRFAEKGIRTKVATPGWEPTAGEVTLYQALSHAGLVFPKVKKPKDA 468 Query: 481 ----LVVVTETNLTGNRATAV-EGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMV 535 LVVVTET+LTGNR + E KR AKRRN VDPLAL GD VVH+ HGIG+F++M Sbjct: 469 EPLPLVVVTETDLTGNRVGDIAEAKRRPAKRRNKVDPLALKQGDFVVHETHGIGKFLKMA 528 Query: 536 ERTVGG----ARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSD 591 ERT+ +RREY+VLEYA +KRG +D+L+VPMDSLD LS+Y GG++P LS++GGSD Sbjct: 529 ERTIQSGDETSRREYIVLEYAPSKRGQPADQLWVPMDSLDLLSKYTGGESPHLSKMGGSD 588 Query: 592 WTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAI 651 W NTK KAR AVREIAGELV LYAKRQA+PGH F+PD PWQAEMED F F ET DQ+ AI Sbjct: 589 WKNTKKKARAAVREIAGELVELYAKRQAAPGHQFSPDNPWQAEMEDNFPFVETEDQMLAI 648 Query: 652 TEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 711 VK DME ++PMDRV+ GDVGYGKTE+A+RAAFKAVQDG QVAVLVPTTLLA QH TF Sbjct: 649 DAVKHDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGMQVAVLVPTTLLAQQHFDTF 708 Query: 712 TDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVD 771 ++RM GFPV ++ LSRFT E++ + +G+ADGSVD+V+GTHRLLQTGV WK+LGL+VVD Sbjct: 709 SERMTGFPVKIEVLSRFTSKKEAKDIFKGLADGSVDIVVGTHRLLQTGVHWKNLGLIVVD 768 Query: 772 EEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 831 EEQRFGVEHKEHIK+L++ VDVLTMSATPIPRTLEMS+AGIREMSTILTPPE+R+PVLTY Sbjct: 769 EEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTY 828 Query: 832 VGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDL 891 VG ++DKQVAAA+RRELLRDGQ F++HN+VS I+ A +R LVPEARVVVAHGQM E++ Sbjct: 829 VGAYEDKQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPEARVVVAHGQMNEEV 888 Query: 892 LERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 951 LE+TVQGFW RE+D+LVCTTIVETGLDI+NANTLIVE A GLSQLHQLRGRVGRSRER Sbjct: 889 LEQTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRER 948 Query: 952 GYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAG 1011 GYAYFLYP A LTET+YDRLATIAQNN+LGAGMAVA+KDLE+RGAGNVLG +QSGH+AG Sbjct: 949 GYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAG 1008 Query: 1012 VGFDLYVRLVGEAVEAYRAAADGKTVT-TPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 VGFDLYVRLVGEAVE +++ A G+ T T E PK++RIDLPVDAH+P YI S+ Sbjct: 1009 VGFDLYVRLVGEAVETFKSLARGEAPTVTDEGPKEIRIDLPVDAHIPEGYIDSERLRLEV 1068 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 +D + AV++E+ DR+G LP+ +GI+D++ V Sbjct: 1069 YRKLAASQNDDDLKAVIEEMEDRFGPLPQEVLRLLSVARLRHQARRAGISDITV-QGTRV 1127 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDG-GVGAPRIRDVELVQMVANLV 1189 + P++LPDS QVRLKR+YPG +RA + VP P+ G V +P++RD EL+Q A+ + Sbjct: 1128 KFHPVELPDSKQVRLKRLYPGSSFRAAAKAINVPFPKAGRNVTSPKLRDTELIQWAADFL 1187 Query: 1190 TAL 1192 +AL Sbjct: 1188 SAL 1190 >tr|C0WFA9|C0WFA9_9CORY Tax_Id=525260 SubName: Full=Possible transcription-repair coupling factor;[Corynebacterium accolens ATCC 49725] Length = 1213 Score = 1274 bits (3297), Expect = 0.0 Identities = 676/1223 (55%), Positives = 841/1223 (68%), Gaps = 46/1223 (3%) Query: 13 IAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVTATGREA 72 +AGL+ +A T P + L+A +L + G AR + LA P+L VTAT REA Sbjct: 6 LAGLLKVAATDPKLKGLVANVGQ---DLHITGIDQARPWALGTLAHHAPVLAVTATSREA 62 Query: 73 DDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLGPPLRV 132 +D+TAEL + G+ VA+FPSWETLPHERLSPGVD +G H D LR+ Sbjct: 63 EDLTAELTAMMGDKVAMFPSWETLPHERLSPGVDIIGKRAQVL----HNIDD-----LRI 113 Query: 133 VVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVRG 192 +VTA R L QP+ + + PV L E FD+V+ L AY VDMV +RGEFA RG Sbjct: 114 IVTAARGLSQPILQDIEGRAPVHLEEDHEYNFDDVVRSLEFRAYKHVDMVAKRGEFATRG 173 Query: 193 GILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTEDVX 252 GI+D+F T ++PVRVEFWGDE+T++R FSVADQR+IPEIEV + REL +T+ V Sbjct: 174 GIIDVFPTTLDYPVRVEFWGDEVTDIRQFSVADQRTIPEIEVGRVDIFTARELPITDAVA 233 Query: 253 XXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQLAEGT 312 H T +++++L K++E IP +GMEA+LPVL L++ L T Sbjct: 234 QRAATLAATH-----TGNPALVELLTKVSEHIPAEGMEAVLPVLSDAPLITLSEFLPAAT 288 Query: 313 PVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALG--GSGFAELEQVQT 370 V++ PEK+R R DL KT EFL A W AAMG D P+ E L GS + E ++ Sbjct: 289 HVVMMAPEKIRRRVEDLEKTDAEFLAAGWEAAAMGADGPLSTEGLDTEGSSYRSFESLEV 348 Query: 371 AASSSGHPWWTLSQLS-----EESATELEVRAAPSARGHQKDIDDIFAMLRAHVSTGGYA 425 + +G P WT S EE LE P+ RG K+ID + A L AH + GG A Sbjct: 349 SIREAGQPLWTFSPPGMLAGPEEETLPLEFEPGPTPRGDIKEIDAMMAQLLAHTNAGGRA 408 Query: 426 VMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN----- 480 + P G RMVER AE I + PG P G V + + G++ P Sbjct: 409 AFIAPAQGAIKRMVERFAEQGIRTKVATPGWEPSAGEVTLYQALSHAGLVFPKVRKLKDA 468 Query: 481 ----LVVVTETNLTGNRATAV-EGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMV 535 LVVVTET+LTGNR + + KR AKRRN VDPLAL GD VVH+ HGIG+F++M Sbjct: 469 EALPLVVVTETDLTGNRVGDIADAKRRPAKRRNKVDPLALKQGDFVVHETHGIGKFLKMA 528 Query: 536 ERTVGG----ARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSD 591 ERT+ +RREY+VLEYA +KRG +D+L+VPMDSLD LS+Y G ++P LS++GGSD Sbjct: 529 ERTIQSGDETSRREYIVLEYAPSKRGQPADQLWVPMDSLDLLSKYTGSESPHLSKMGGSD 588 Query: 592 WTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAI 651 W NTK KAR AVREIAGELV LYAKRQA+PGH FAPD PWQAEMED F F ET DQ+ AI Sbjct: 589 WKNTKKKARAAVREIAGELVDLYAKRQAAPGHQFAPDNPWQAEMEDNFPFVETEDQMLAI 648 Query: 652 TEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 711 VK DME ++PMDRV+ GDVGYGKTE+A+RAAFKAVQDG QVAVLVPTTLLA QH TF Sbjct: 649 DAVKEDMESTVPMDRVVVGDVGYGKTEVAIRAAFKAVQDGTQVAVLVPTTLLAQQHFDTF 708 Query: 712 TDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVD 771 ++RMAGFPV + LSRFT E+ + +G+ADGS+D+V+GTHRLLQTGV WK+LGL+VVD Sbjct: 709 SERMAGFPVKMAVLSRFTSKKEATEIFKGLADGSIDIVVGTHRLLQTGVHWKNLGLIVVD 768 Query: 772 EEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 831 EEQRFGVEHKEHIK+L++ VDVLTMSATPIPRTLEMS+AGIREMSTILTPPE+R+PVLTY Sbjct: 769 EEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTY 828 Query: 832 VGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDL 891 VG ++DKQVAAA+RRELLRDGQ F++HN+VS I+ A +R LVPEAR+VVAHGQM ED+ Sbjct: 829 VGAYEDKQVAAAIRRELLRDGQTFFIHNKVSDIEKKARELRDLVPEARIVVAHGQMNEDV 888 Query: 892 LERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 951 LE+TVQGFW RE+D+LVCTTIVETGLDI+NANTLIVE A GLSQLHQLRGRVGRSRER Sbjct: 889 LEKTVQGFWDREYDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRER 948 Query: 952 GYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAG 1011 GYAYFLYP A LTET+YDRLATIAQNN+LGAGMAVA+KDLE+RGAGNVLG +QSGH+AG Sbjct: 949 GYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAG 1008 Query: 1012 VGFDLYVRLVGEAVEAYRAAADGKT-VTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 VGFDLYVRLVGEAVEA+++ A G+ T E PK++RIDLPVDAH+P YI S+ Sbjct: 1009 VGFDLYVRLVGEAVEAFKSLARGEAPAVTDEGPKEIRIDLPVDAHIPESYIDSERLRLEV 1068 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 + +AA +E+ DR+G LP+ +G+ D++ V Sbjct: 1069 YRKLAASQDNKDLAAAREEMEDRFGPLPKEVERLLAVARLRHQARRAGVADITV-QGTRV 1127 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDG-GVGAPRIRDVELVQMVANLV 1189 + P++LPDS QVRLKR+YPG +RA + VP P+ G V +P++RD EL+Q A+ + Sbjct: 1128 KFHPVELPDSKQVRLKRLYPGSSFRAAAKAINVPFPKAGRNVTSPKLRDEELIQWAADFL 1187 Query: 1190 TALAGKPQQDIGRTSLSEDDAAA 1212 +AL D+ ++S ++A A Sbjct: 1188 SALF-----DVQPINVSGEEAGA 1205 >tr|C8RQD1|C8RQD1_CORJE Tax_Id=525262 (mfd)SubName: Full=Transcription-repair coupling factor;[Corynebacterium jeikeium ATCC 43734] Length = 1243 Score = 1272 bits (3292), Expect = 0.0 Identities = 692/1251 (55%), Positives = 845/1251 (67%), Gaps = 63/1251 (5%) Query: 7 ASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVT 66 ++P +AGL+ A + ++ + L + P A F LAQ+ PLLVVT Sbjct: 15 SNPAPSLAGLLKAAAQDGKLRGMMTHLGE--GGLHMQAPEGAWPFAVGTLAQRTPLLVVT 72 Query: 67 ATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRL 126 ATGR+A D+T LR + G+ V LFPSWETLPHE+LSP V+TV ++ Sbjct: 73 ATGRQAQDLTTVLRYMLGDRVELFPSWETLPHEKLSPAVETVSTRMRVLRRLHEGDEN-- 130 Query: 127 GPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRG 186 L+VVV R+ +QP+ LG PV L VG+EI FD + RL EL YT VD+VG+RG Sbjct: 131 ---LQVVVAPTRAAVQPVQSNLGEVTPVRLKVGEEIDFDSLTHRLQELGYTHVDVVGKRG 187 Query: 187 EFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELL 246 FA+RGGI+D+F T E PVRV+FWGDEITE+R FSV DQR+IP +E ++ ACREL+ Sbjct: 188 HFAIRGGIVDIFPATEEMPVRVDFWGDEITEVRAFSVGDQRTIPGVEPDQVMVYACRELI 247 Query: 247 LTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTD 306 +T++V ++ A E+ + ++L K+++ I GME+L+P L + L + Sbjct: 248 VTDEVASKA-----KNLAQEHAGNAELAEILDKISQKIQVQGMESLIPALHTAELVALPE 302 Query: 307 QLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGSGFAELE 366 + EGT LV P V RA DL +TG++FLEA W VAAMG AP++ G + ++ Sbjct: 303 LMPEGTHTLVMAPAAVERRAHDLRETGQQFLEAGWDVAAMGGSAPME-----GVAYLSID 357 Query: 367 QVQTAASSSGHPWWTLSQLS-------EESATELEVRAAPSARGHQKDIDDIFAMLRAHV 419 VQ G PWWTLS L EL +AP G + I + + +R V Sbjct: 358 AVQKVQQKLGRPWWTLSTLGMADFDADTSDVLELNYDSAPRPHGEMEAIGALMSDIRKRV 417 Query: 420 STGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGV----------------- 462 +GG P A RM+ R E+ I A + + G+ Sbjct: 418 ESGGRVAFAAPTPAVAARMLRRFQEAGIAAEAIGVDLSGSRGLGRIKKSKHTTADEPAPH 477 Query: 463 -VGVLKGPLRDGVIVPGA------NLVVVTETNLTGNRATA-VEGKRLAAKRRNTVDPLA 514 V + +G++ P +L+ TET+LTGNR A GKR AK+RN VDPLA Sbjct: 478 QVSIYHAVAYEGLVFPFTGDDKRPSLLFFTETDLTGNRVDAKATGKRKPAKKRNRVDPLA 537 Query: 515 LTAGDLVVHDQHGIGRFVEMVERTVG----GARREYLVLEYASAKRGGGSDKLYVPMDSL 570 L +GDLVVHD HGIG+FV+M ERTVG +RREYLVLEYA +KRGG D+LYVPMD L Sbjct: 538 LESGDLVVHDSHGIGKFVKMTERTVGKGPDASRREYLVLEYAPSKRGGPGDQLYVPMDQL 597 Query: 571 DQLSRYVGGQAPALSRLGGSDWTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTP 630 D LSRYVGG+ PALS++GG+DW NTK KAR AVREIAGELV LYA RQA+PG+AFA DTP Sbjct: 598 DMLSRYVGGEKPALSKMGGADWKNTKRKARGAVREIAGELVQLYASRQAAPGYAFAADTP 657 Query: 631 WQAEMEDAFGFTETVDQLTAITEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQD 690 WQ EMEDAF FTET DQ AI VK DMEK +PMDRVI GDVGYGKTE+AVRAAFKAVQ Sbjct: 658 WQREMEDAFPFTETEDQYNAIEAVKADMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQS 717 Query: 691 GKQVAVLVPTTLLADQHLQTFTDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVI 750 GKQVAVLVPTTLLA QH TF++RM FP T+K LSRFT PAES+ VI GMADG+VD+VI Sbjct: 718 GKQVAVLVPTTLLAQQHYNTFSERMQDFPTTIKELSRFTTPAESKKVIAGMADGTVDIVI 777 Query: 751 GTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLA 810 GTHRLLQTGV WK+LGL++VDEEQRFGVEHKEHIKSLR+HVDVLTMSATPIPRTLEMS+A Sbjct: 778 GTHRLLQTGVHWKNLGLIIVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMA 837 Query: 811 GIREMSTILTPPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAAR 870 GIREMSTILTPPE+R+PVLTYVG +DK VAAA+RRELLRDGQ FYVHN+V SI+ TAA Sbjct: 838 GIREMSTILTPPEDRHPVLTYVGAQEDKHVAAAIRRELLRDGQVFYVHNKVRSIEQTAAD 897 Query: 871 IRKLVPEARVVVAHGQMPEDLLERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERA 930 IR+LVPEARVVVAHGQM E+ LE TV+GFW REFD+LVCTTIVETGLDI+NANTLIVE A Sbjct: 898 IRRLVPEARVVVAHGQMSEEQLETTVKGFWDREFDVLVCTTIVETGLDIANANTLIVENA 957 Query: 931 DTFGLSQLHQLRGRVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALK 990 GLSQLHQLRGRVGRSRERGYAYFLYP LTET+YDRL TIAQNN+LGAGMAVA+K Sbjct: 958 HHMGLSQLHQLRGRVGRSRERGYAYFLYPKGEVLTETSYDRLTTIAQNNDLGAGMAVAMK 1017 Query: 991 DLEIRGAGNVLGVEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKTVT-TPEEPKDVRID 1049 DLE+RGAGNVLG EQSGH+AGVGFDLYVRLVGEAVEA+RA ADGK V EE K++RID Sbjct: 1018 DLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFRAMADGKPVDGREEEKKEIRID 1077 Query: 1050 LPVDAHLPPDYIGSDXXXXXXXXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXX 1109 LPVDAH+P +YI S+ + + V++EL DRYG PE Sbjct: 1078 LPVDAHIPAEYIASERLRLEAYRKFAEVQDEEQIEKVLEELHDRYGKPPEQIQMLAVLSR 1137 Query: 1110 XXXXXXXSGITDVSAPSSATVRLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDG 1169 +T+V + + + +P++L DS QVRLKR++P +YRATT V +P P+ G Sbjct: 1138 LRLLCRDLQVTEV-VTTGSKISFSPIELQDSTQVRLKRLFPAANYRATTKIVLIPAPKRG 1196 Query: 1170 -GVGAPRIRDVELVQMVANLVTALAGKPQQDIGRTSLSEDDAAATASGKER 1219 G+ A +RD ELVQ A+ +T LAG P +++ A SGK++ Sbjct: 1197 QGMRAVPLRDTELVQWCADALTQLAGIPIRNMA-------GGADKGSGKDK 1240 >tr|C3PFA1|C3PFA1_CORA7 Tax_Id=548476 (mfd)SubName: Full=Transcription-repair coupling factor;[Corynebacterium aurimucosum] Length = 1212 Score = 1264 bits (3271), Expect = 0.0 Identities = 670/1211 (55%), Positives = 838/1211 (69%), Gaps = 38/1211 (3%) Query: 13 IAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVTATGREA 72 + GL+ +A + P + L ++ + L + G AR + LA P+LVVTA+GREA Sbjct: 2 LGGLLKVAASDPKLKGLASQVGEA--SLHITGIDQARPWAIGTLAHHAPVLVVTASGREA 59 Query: 73 DDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLGPPLRV 132 +D+TAEL + G+ VA FP+WETLPHERLSP D VG A D +V Sbjct: 60 EDLTAELTAMLGDKVAYFPAWETLPHERLSPAADIVGKR-------ARVLDLVGAGKAQV 112 Query: 133 VVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVRG 192 VVT+ R QP+ ++ + P+ L E +++ L AY VDMV +RGE+A RG Sbjct: 113 VVTSARGYCQPILSKVEGRAPIFLKEEDEHELSHILSELEFRAYKHVDMVAKRGEYATRG 172 Query: 193 GILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTEDVX 252 GILD+F T+++PVRVEFWGDEIT++R FSVADQR+IPEIEV + REL +T +V Sbjct: 173 GILDVFPTTSDYPVRVEFWGDEITDIRQFSVADQRAIPEIEVGEVAIYPARELPITNEVA 232 Query: 253 XXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQLAEGT 312 + + ++ ++L K+ E IP +GMEA+L VL L + LA GT Sbjct: 233 ARARELARKFGGN-----AALAELLTKVGEHIPAEGMEAVLAVLADVPFVTLPELLAAGT 287 Query: 313 PVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEAL--GGSGFAELEQVQT 370 VL+ PEK+RTR ADL T EFL A W AAMG D P+ E L S + E ++T Sbjct: 288 HVLLVAPEKIRTRIADLESTDAEFLAAGWEAAAMGADGPLAAEGLDTSASSYRSYESLET 347 Query: 371 AASSSGHPWWTLSQ-----LSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVSTGGYA 425 + P WT + +E L+ P+ RG +ID + A L AH + GG A Sbjct: 348 TCRNIEAPLWTFAPPGMFAAAESETLPLDFEPGPTPRGDITEIDAMMAQLLAHTTAGGRA 407 Query: 426 VMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN----- 480 + P G RMVER AE IP + PG P G V + + G++ P Sbjct: 408 AFIAPAQGAIKRMVERFAEKGIPTKVATPGWEPSPGEVTLYQALSHAGLVFPKVRKLKDA 467 Query: 481 ----LVVVTETNLTGNRATAVEG-KRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMV 535 LVV+TET+LTGNR + G KR AKRRN VDPLAL GD VVH+ HGIG+F++M Sbjct: 468 EALPLVVITETDLTGNRVGDIAGAKRRPAKRRNRVDPLALKQGDYVVHETHGIGKFLKMA 527 Query: 536 ERTVGG----ARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSD 591 ERTV +RREY+VLEYA++KRG +D+L+VPMDSLD LS+Y GG+AP LS++GGSD Sbjct: 528 ERTVQSGDETSRREYIVLEYAASKRGQPADQLWVPMDSLDLLSKYTGGEAPTLSKMGGSD 587 Query: 592 WTNTKTKARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAI 651 W NTK KAR AVREIAGELV LYAKRQA+PGH F PDTPWQAEMED F F ET DQ+ AI Sbjct: 588 WKNTKKKARAAVREIAGELVELYAKRQAAPGHQFGPDTPWQAEMEDNFPFVETEDQMLAI 647 Query: 652 TEVKGDMEKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTF 711 VK DME ++PMDRV+ GDVGYGKTE+AVRAAFKAVQDGKQVAVLVPTTLLA QH TF Sbjct: 648 DAVKEDMESTVPMDRVVVGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHADTF 707 Query: 712 TDRMAGFPVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVD 771 +RM GFPV ++ LSRFT ES+ ++ G+ADGSVD+VIGTHRLLQTGV+WK+LGL+VVD Sbjct: 708 RERMQGFPVDIEVLSRFTSAKESKEILAGLADGSVDIVIGTHRLLQTGVQWKNLGLIVVD 767 Query: 772 EEQRFGVEHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 831 EEQRFGVEHKEHIK+L++ VDVLTMSATPIPRTLEMS+AGIREMSTILTPPE+R+PVLTY Sbjct: 768 EEQRFGVEHKEHIKALKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTY 827 Query: 832 VGPHDDKQVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDL 891 VG ++DKQVAAA+RRELLRDGQ F++HN+V+ I+ A +R LVPEAR+VVAHGQM ED+ Sbjct: 828 VGAYEDKQVAAAIRRELLRDGQVFFIHNKVADIEKKARELRDLVPEARIVVAHGQMNEDV 887 Query: 892 LERTVQGFWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRER 951 LERTVQGFW REFD+LVCTTIVETGLDI+NANTLIVE A GLSQLHQLRGRVGRSRER Sbjct: 888 LERTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHMGLSQLHQLRGRVGRSRER 947 Query: 952 GYAYFLYPPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAG 1011 GYAYFLYP A LTET+YDRLATIAQNN+LGAGMAVA+KDLE+RGAGNVLG EQSGH+AG Sbjct: 948 GYAYFLYPKGATLTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAG 1007 Query: 1012 VGFDLYVRLVGEAVEAYRAAADGKT-VTTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXX 1070 VGFDLYVRLVGEAVE ++A A G+T V T E PK++RIDLPVDAH+P YI S+ Sbjct: 1008 VGFDLYVRLVGEAVETFKALARGETPVVTDEGPKEIRIDLPVDAHIPESYINSERLRLEV 1067 Query: 1071 XXXXXXXTSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATV 1130 ++ +A VV+E+ DRYG +PEP +G++D++ + Sbjct: 1068 YRKLAASKENADLAHVVEEMQDRYGPVPEPVERLLAVARLRHQARRAGVSDITV-QGTRI 1126 Query: 1131 RLAPMDLPDSAQVRLKRMYPGGHYRATTSTVQVPIPRDG-GVGAPRIRDVELVQMVANLV 1189 ++ P++L DS QVRLKR++PG +YRA +Q+ P+ G V P++RD+EL+Q +A+ + Sbjct: 1127 KVHPVELADSKQVRLKRLFPGSNYRAAAKAIQLNFPKAGRNVTDPKLRDIELLQWMADFL 1186 Query: 1190 TALAGKPQQDI 1200 ++ + D+ Sbjct: 1187 ASMFELERVDV 1197 >tr|B1VFK5|B1VFK5_CORU7 Tax_Id=504474 SubName: Full=Transcription-repair coupling factor;[Corynebacterium urealyticum] Length = 1249 Score = 1262 bits (3266), Expect = 0.0 Identities = 680/1241 (54%), Positives = 837/1241 (67%), Gaps = 55/1241 (4%) Query: 2 TAPGAASPDTP-IAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG 60 +APG P ++G++ A + L+ +L + GP + F +AQ Sbjct: 14 SAPGNKGHAAPALSGVLRAAARDSKLKGLVTHVGAA--QLAIQGPDAVWPFAVGTIAQHA 71 Query: 61 PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAH 120 P+LV+TAT R+A+D+T +L+ + G+ V L P+WETLPHER+SP V+TV Sbjct: 72 PVLVITATARQAEDLTEQLKAMLGDEVELMPAWETLPHERISPNVETVSQRMKVLRRLHR 131 Query: 121 PEDTRLGPP---LRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYT 177 LG +RVVV VR+L+QP+ LG PV +V QE+ F+++ LVE Y+ Sbjct: 132 QTAGELGESDTHIRVVVAPVRTLVQPIQDSLGAVTPVHFAVDQEVDFEQIQHELVERGYS 191 Query: 178 RVDMVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTL 237 VD+V +RG FAVRGGILD+F T E PVRVEFWGDE++++R FSV DQR+IP +E+ + Sbjct: 192 AVDVVAKRGHFAVRGGILDVFPATGELPVRVEFWGDEVSDIRPFSVGDQRTIPGVELDEV 251 Query: 238 VAVACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLR 297 RELL+T+ V +H + + D+ K++E I GMEAL+P L Sbjct: 252 TVYPARELLITDSVATRAGQLAKEHASH-----AELADVYHKISEKIVVPGMEALIPSLH 306 Query: 298 PDDHALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEAL 357 + LL + L EGT +V P V RAADL +TG +FLEA W AAMG +AP D Sbjct: 307 DGELKLLPEFLPEGTHTIVLAPAAVERRAADLKETGEQFLEAGWEAAAMGANAPAD---- 362 Query: 358 GGSGFAELEQVQTAASSSGHPWWTLSQLSEESATE--------LEVRAAPSARGHQKDID 409 G + + + A ++ PWWTLS L + E L+ AAP RG + I+ Sbjct: 363 -GVAYVSVAAARHAQTALDRPWWTLSPLGMLDSDEGFDGDALLLDYDAAPQPRGEMEAIE 421 Query: 410 DIFAMLRAHVSTGGYAVMVEPGTGTAHRMVERLAESDIPAAML----------------- 452 + A +R V GG P + A RM+ R E+ I A + Sbjct: 422 HMMADIRTRVEAGGRVAFAAPTSTVAARMLRRFHEAGIAAEAVGVDLRGQRGIGRQAASK 481 Query: 453 -EPGAAPKLGVVGVLKGPLRDGVIVPGA-----NLVVVTETNLTGNRA-TAVEGKRLAAK 505 P P V + +G++ P A +L+ +TET++TGNR A GKR AK Sbjct: 482 ATPDQEPAPKKVSIYHAVAHEGLVFPMAGGEHPSLLFLTETDVTGNRVEAAATGKRKPAK 541 Query: 506 RRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG----GARREYLVLEYASAKRGGGSD 561 RRN VDPLAL GDLVVHD HGIG+FV+M ERTVG +RREYLVLEYA +KRGG D Sbjct: 542 RRNRVDPLALEPGDLVVHDSHGIGKFVKMTERTVGKGADASRREYLVLEYAPSKRGGPGD 601 Query: 562 KLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKARKAVREIAGELVALYAKRQASP 621 +LYVPMD LD LSRYVGG+ PALS++GG+DW NTK KARKAVREIAGELV LYA+RQA+P Sbjct: 602 QLYVPMDQLDLLSRYVGGEKPALSKMGGADWKNTKRKARKAVREIAGELVQLYAQRQAAP 661 Query: 622 GHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEKSIPMDRVICGDVGYGKTEIAV 681 G+AFAPD+PWQ EME+AF FTET DQ AI VK DMEK +PMDRVI GDVGYGKTE+AV Sbjct: 662 GYAFAPDSPWQREMEEAFPFTETEDQFNAIEAVKSDMEKPVPMDRVIVGDVGYGKTEVAV 721 Query: 682 RAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPVTVKGLSRFTDPAESRTVIEGM 741 RAAFKAVQ GKQVAVLVPTTLLA QH++TF DRM FP + LSRFT PA+S+ +++G+ Sbjct: 722 RAAFKAVQSGKQVAVLVPTTLLAQQHMKTFRDRMQDFPTRIAELSRFTTPAQSKEILKGL 781 Query: 742 ADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRSHVDVLTMSATPI 801 A+G++D+V+GTHRLLQTGV WK+LGL++VDEEQRFGVEHKEHIKSLR+HVDVLTMSATPI Sbjct: 782 AEGTIDIVVGTHRLLQTGVTWKNLGLIIVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPI 841 Query: 802 PRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRV 861 PRTLEMS+AGIREMSTILTPP++R+PVLTYVG +DK VAAA+RRELLRDGQ FY+HNRV Sbjct: 842 PRTLEMSMAGIREMSTILTPPQDRHPVLTYVGAQEDKHVAAAIRRELLRDGQVFYIHNRV 901 Query: 862 SSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGFWQREFDILVCTTIVETGLDISN 921 SI+ A IR LVPEARVVVAHGQM E+ LE TV+GFW REFDILVCTTIVETGLDISN Sbjct: 902 KSIEKAAEHIRSLVPEARVVVAHGQMSEEQLETTVEGFWNREFDILVCTTIVETGLDISN 961 Query: 922 ANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNEL 981 ANTLIVE A GLSQLHQLRGRVGRSRER YAYFLYP LTET+YDRL+TIAQNNEL Sbjct: 962 ANTLIVENAHHMGLSQLHQLRGRVGRSRERAYAYFLYPKGEVLTETSYDRLSTIAQNNEL 1021 Query: 982 GAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKTVT-TP 1040 GAGMAVA+KDLE+RGAGNVLG EQSGH+AGVGFDLYVRLVGEAVEA+RA ADGK V Sbjct: 1022 GAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFRAMADGKPVDGRE 1081 Query: 1041 EEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXXXXTSDSGVAAVVDELIDRYGALPEP 1100 EE K++RIDLPVDAH+P Y+ S+ + + V+ E DRYG P Sbjct: 1082 EEKKEIRIDLPVDAHIPVTYVASERLRLEAYRKLAEAQDEDQIEEVLTEFRDRYGEPPAQ 1141 Query: 1101 XXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAPMDLPDSAQVRLKRMYPGGHYRATTST 1160 G+++V A S + +P+DL DS QVRLKR++PG YRATT Sbjct: 1142 VTNLAVLSRLRLVCRDLGVSEVVATGS-RISFSPIDLQDSGQVRLKRLFPGATYRATTKV 1200 Query: 1161 VQVPIPRDG-GVGAPRIRDVELVQMVANLVTALAGKPQQDI 1200 V +P P++G G+ A +RDV L Q AN +T LAG P++DI Sbjct: 1201 VVIPAPKEGAGMRAVALRDVPLAQWCANALTQLAGIPERDI 1241 >tr|C0XQ03|C0XQ03_9CORY Tax_Id=525263 SubName: Full=Possible transcription-repair coupling factor;[Corynebacterium lipophiloflavum DSM 44291] Length = 1191 Score = 1261 bits (3262), Expect = 0.0 Identities = 666/1198 (55%), Positives = 835/1198 (69%), Gaps = 40/1198 (3%) Query: 13 IAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVTATGREA 72 + GL+ +A+T P + L++ DEL L G RS+ A+AL++Q P+L+VTATG EA Sbjct: 8 LGGLLTVAMTDPKLKGLLSNIGQ--DELHLTGIDQTRSWAAAALSRQVPVLLVTATGHEA 65 Query: 73 DDVTAELRGVFG-EAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLGPPLR 131 +D+ AEL + G E V FP+ ETLPHERLSP D VG L + Sbjct: 66 EDLAAELAALIGPEKVGYFPALETLPHERLSPAADVVGRRSKV-----------LHDAPQ 114 Query: 132 VVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVR 191 V+V A R++ QP+ P + +P+ ++ G E F ++ + AY VDMV +RGEFA R Sbjct: 115 VIVAAARAVCQPVLPAI---DPIVIARGSEYDFTQLTESIAHFAYEHVDMVAKRGEFATR 171 Query: 192 GGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTEDV 251 GG++D+F TAEHPVR+EFWGDE+T++R F+VADQR I E++ T+ R+LL+ V Sbjct: 172 GGLIDVFPTTAEHPVRIEFWGDEVTDIRTFAVADQRGIDEVD--TVELFPARQLLIDASV 229 Query: 252 XXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQLAEG 311 HP + +++ ML ++++G DGMEAL+P L +L + L +G Sbjct: 230 AARADELARAHPQN-----ATLVQMLTRISQGHHADGMEALIPALTEKPFRVLPELLPKG 284 Query: 312 TPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEAL--GGSGFAELEQVQ 369 + VLV PEKVR R DL T +EFLEA W AAMG PV VE L S + E ++ Sbjct: 285 SVVLVTAPEKVRARIEDLEATDKEFLEAGWEAAAMGAQGPVAVEGLDVSASSYRSFESLR 344 Query: 370 TAASSSGHPWWTLS---QLSEESATEL--EVRAAPSARGHQKDIDDIFAMLRAHV-STGG 423 + +SG+ WWT + + + AT L E AP+ +G K I+ +FA ++ HV S G Sbjct: 345 ASTLASGNSWWTFAPPGMFAADDATTLPLEFEPAPAPKGDPKAIEQLFATVKLHVQSNNG 404 Query: 424 YAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGANLVV 483 A V P GT R ERL E I A + G P G V + + G+++PG N+VV Sbjct: 405 TAAFVAPAKGTVERFAERLREHGISARIASDGLEPVTGQVTLYQALSHAGLVLPGPNMVV 464 Query: 484 VTETNLTGNRATAVEG-KRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG-- 540 +TET++TGNR + G KR A +RRN VDPLAL GD VVH+ HGIGRFV+M ERTV Sbjct: 465 ITETDVTGNRVGDIAGAKRRAPRRRNRVDPLALNPGDFVVHETHGIGRFVKMAERTVHTG 524 Query: 541 --GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTK 598 +RREY+VLEY AKRG +D+L+VPM+SLD LS+Y GG+ P+LS++GGSDW +TK K Sbjct: 525 EEDSRREYIVLEYQPAKRGQPNDQLWVPMESLDLLSKYSGGEQPSLSKMGGSDWRSTKRK 584 Query: 599 ARKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDM 658 AR AVREIA ELV LYAKRQA+PGHAFAPDTPWQ EMED F F ET DQL AI VK DM Sbjct: 585 ARAAVREIAAELVQLYAKRQAAPGHAFAPDTPWQVEMEDNFPFVETEDQLLAIDAVKEDM 644 Query: 659 EKSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGF 718 EK PMDRVI GDVG+GKTE+AVRAAFKAVQDGKQVAVLVPTTLLA QH TF+ RM GF Sbjct: 645 EKPTPMDRVIVGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHFSTFSTRMDGF 704 Query: 719 PVTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGV 778 VT++ LSRFT ES+ + G+ADGSVDVVIGTHRLL TGV+WK+LGL+VVDEEQRFGV Sbjct: 705 GVTIRELSRFTSAKESKETLAGLADGSVDVVIGTHRLLATGVQWKNLGLIVVDEEQRFGV 764 Query: 779 EHKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK 838 EHKEHIK+L+SHVDVLTM+ATPIPRTLEMSL GIREM++I TPPE+R+PVLTYVGP +DK Sbjct: 765 EHKEHIKALKSHVDVLTMTATPIPRTLEMSLTGIREMTSITTPPEDRHPVLTYVGPQEDK 824 Query: 839 QVAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQG 898 Q+AAA+RRELLRDGQ FY+HN+V+ I+ A R+R LVPEARVVVAHGQM E LLE+TVQG Sbjct: 825 QIAAAIRRELLRDGQIFYIHNKVADIEKAARRVRDLVPEARVVVAHGQMSEQLLEQTVQG 884 Query: 899 FWQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLY 958 FW RE+D+LVCTTIVETGLDI+NANTLIVE A GLSQLHQLRGRVGRSR+R YAYFLY Sbjct: 885 FWNREYDVLVCTTIVETGLDIANANTLIVENAQNMGLSQLHQLRGRVGRSRDRAYAYFLY 944 Query: 959 PPQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYV 1018 P LTET+YDRLATIAQNN+LG+G+AVA KDLE+RGAGNVLG EQSGH+AGVGFD+YV Sbjct: 945 PKDKTLTETSYDRLATIAQNNDLGSGIAVAQKDLEMRGAGNVLGAEQSGHIAGVGFDMYV 1004 Query: 1019 RLVGEAVEAYRAAADGKTV-TTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXXXX 1077 RLVGEAV+ Y+A G+TV T + PK++RIDLPVDAH+P Y+ S+ Sbjct: 1005 RLVGEAVDTYKALMTGETVDATGQGPKEIRIDLPVDAHIPDTYVNSERLRLEIYRKLAES 1064 Query: 1078 TSDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAPMDL 1137 D+ +A V +E++DR+G LP +G++D+ S +R P++L Sbjct: 1065 RDDADLATVSEEMVDRFGPLPREVEHLIAVARLRQQARAAGVSDILVQGS-RIRFQPVEL 1123 Query: 1138 PDSAQVRLKRMYPGGHYRATTSTVQVPIPR-DGGVGAPRIRDVELVQMVANLVTALAG 1194 PDS QVRLKR+YPG +YRA +QVP+PR GV P +RD ELVQ V++ + + G Sbjct: 1124 PDSKQVRLKRLYPGANYRAAAKALQVPLPRAAAGVNQPTLRDTELVQWVSDFLADMFG 1181 >tr|C8NVV2|C8NVV2_9CORY Tax_Id=585529 (mfd)SubName: Full=Transcription-repair coupling factor; EC=3.6.1.-;[Corynebacterium genitalium ATCC 33030] Length = 1224 Score = 1249 bits (3232), Expect = 0.0 Identities = 663/1230 (53%), Positives = 840/1230 (68%), Gaps = 42/1230 (3%) Query: 13 IAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQGPLLVVTATGREA 72 +AG++ A P L AR D L + G R + A+AL+++ P+L++TATG EA Sbjct: 11 LAGVLTQAAGDPKLTGLRARVGD--PALHVTGIDQVRPWAAAALSREVPVLLITATGHEA 68 Query: 73 DDVTAELRGVFG-EAVALFPSWETLPHERLSPGVDTVGAXXXXXXXXAHPEDTRLGPPLR 131 +D+ AE+ + G E VAL P+ ETLPHERLSP D +GA A R Sbjct: 69 EDLAAEIAALIGQEQVALMPALETLPHERLSPAADVIGARNKVVHNIAST---------R 119 Query: 132 VVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVR 191 VVV + R+ QP+ P + PV++ +G+E F E+ LV AY VDMV +RGEFA R Sbjct: 120 VVVASARAACQPVLPPVA---PVTVKLGEEYDFGELTETLVRFAYEHVDMVAKRGEFATR 176 Query: 192 GGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAVACRELLLTEDV 251 GGI+D+F TAEHPVR+EFWGDE T++R F+VADQR+I + V+++ R+LL+ + V Sbjct: 177 GGIIDVFPTTAEHPVRIEFWGDEATDLRTFAVADQRTIDD--VASVEMHPARQLLIDDSV 234 Query: 252 XXXXXXXXXQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDDHALLTDQLAEG 311 H + ++ +L +++EG DGMEA++P L ++L + + G Sbjct: 235 RTRAQALSTAHSGNP-----TLAQLLERVSEGTYVDGMEAIVPALTDASFSVLPELMPAG 289 Query: 312 TPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEAL--GGSGFAELEQVQ 369 + VLV PEKVR R ADL T +EFLEA W AAMG + PV E L S + E ++ Sbjct: 290 SIVLVTSPEKVRARIADLQATDQEFLEAGWEAAAMGAEGPVAAEGLDVSASSYRSFESLE 349 Query: 370 TAASSSGHPWWTLSQ-----LSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVSTGGY 424 +A + + WWT + ++E+ LE AP+ +G K I+ ++ ++ H+ GG Sbjct: 350 VSARDADNAWWTFAPPGMFTANDEATLPLEYEPAPAPKGDPKQIEALYGQVKLHLQGGGR 409 Query: 425 AVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGANLVVV 484 A V P GT RM ERL E+ + A + PG P G V + + G+ PG LVV Sbjct: 410 AAFVAPAKGTIERMAERLRENSVSARIATPGLEPVDGQVTLYQALSHAGLSFPGPGLVVF 469 Query: 485 TETNLTGNRATAVEG-KRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG--- 540 TET++TGNR + G KR A +RRN VDPLAL GD VVHD HGIGRFV+M ERT+G Sbjct: 470 TETDVTGNRVGDIAGAKRRAPRRRNRVDPLALKPGDYVVHDTHGIGRFVKMAERTIGTGS 529 Query: 541 -GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKA 599 ARRE++VLEY AKRG +D L+VPMDSLD LS+Y GG+ P+LS++GGSDW NTK KA Sbjct: 530 DAARREFIVLEYQPAKRGQPADMLWVPMDSLDLLSKYSGGEQPSLSKMGGSDWKNTKRKA 589 Query: 600 RKAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDME 659 R AVREIAGELV LYAKR ++PGHAFA D+PWQ EMED F F ET DQ+ AI VK DME Sbjct: 590 RAAVREIAGELVELYAKRASAPGHAFAADSPWQMEMEDNFPFVETEDQMAAIEAVKSDME 649 Query: 660 KSIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFP 719 K PMDRVI GDVG+GKTE+AVRAAFKAVQDGKQVAVLVPTTLLA QH TF+ RM GF Sbjct: 650 KPTPMDRVIVGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHYSTFSQRMDGFG 709 Query: 720 VTVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVE 779 V ++ LSRFT A+++ + G+ADGSVD+VIGTHRLLQTGV+WK+LGL+VVDEEQRFGVE Sbjct: 710 VEIRELSRFTTAADAKKISAGLADGSVDIVIGTHRLLQTGVQWKNLGLIVVDEEQRFGVE 769 Query: 780 HKEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQ 839 HKEHIK+L+SHVDVLTM+ATPIPRTLEMSL GIREM++I TPPE+R+PVLTYVGP +DKQ Sbjct: 770 HKEHIKALKSHVDVLTMTATPIPRTLEMSLTGIREMTSITTPPEDRHPVLTYVGPQEDKQ 829 Query: 840 VAAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGF 899 VAAA+RRELLRDGQ FY+HN+V+ I+ TA +R LVPEAR+VVAHGQM E +LE+TVQGF Sbjct: 830 VAAAIRRELLRDGQVFYIHNKVADIEKTARHLRTLVPEARIVVAHGQMSEQVLEQTVQGF 889 Query: 900 WQREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYP 959 W REFD+LVCTTIVETGLDI+NANTLIVE A GLSQLHQLRGRVGRSRERGYAYFLYP Sbjct: 890 WGREFDVLVCTTIVETGLDIANANTLIVENAQNMGLSQLHQLRGRVGRSRERGYAYFLYP 949 Query: 960 PQAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVR 1019 LTET+YDRLATIAQNN+LGAGMAVA KDLE+RGAGNVLG EQSGH+AGVGFD+YVR Sbjct: 950 KDKVLTETSYDRLATIAQNNDLGAGMAVAQKDLEMRGAGNVLGAEQSGHIAGVGFDMYVR 1009 Query: 1020 LVGEAVEAYRAAADGKTV-TTPEEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXXXXT 1078 LVGEAVE +++ G+ V T PK++RIDLPVDAH+P YI S+ Sbjct: 1010 LVGEAVETFKSLMQGEVVDATDHGPKEIRIDLPVDAHIPETYINSERLRLESYRKLAAAR 1069 Query: 1079 SDSGVAAVVDELIDRYGALPEPXXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAPMDLP 1138 + + V DEL+DR+G LP +G+ D++ ++ P+D+ Sbjct: 1070 DEDELTTVADELVDRFGDLPAEVQRLFAVARVRHQARKAGVADITM-QGTRLKFHPVDMA 1128 Query: 1139 DSAQVRLKRMYPGGHYRATTSTVQVPIPRDGG----VGAPRIRDVELVQMVANLVTALAG 1194 DS Q+RLKR+YPG +YRA +QVP PR+GG + AP +RD EL+Q VA+ ++ + Sbjct: 1129 DSKQIRLKRLYPGANYRAAAKAIQVPFPREGGTKKALNAPNLRDEELLQWVADFLSEMFD 1188 Query: 1195 KPQQDIGRTSLSEDDAA--ATASGKERQAR 1222 + ++ D AA A +G +R+ R Sbjct: 1189 VDPVSVSGSTAVGDGAADGAAGNGDKRKKR 1218 >tr|C2GIP0|C2GIP0_9CORY Tax_Id=548478 (mfd)SubName: Full=Transcription-repair coupling factor;[Corynebacterium glucuronolyticum ATCC 51866] Length = 1218 Score = 1249 bits (3232), Expect = 0.0 Identities = 664/1191 (55%), Positives = 837/1191 (70%), Gaps = 34/1191 (2%) Query: 38 DELTLVGPASARSFVASALAQQGPLLVVTATGREADDVTAELRGVFGEAVALFPSWETLP 97 + L + P R+++ AL+ PLLVVTA+GREA+D+TAEL + G+ V +PSWETLP Sbjct: 27 ETLHITAPDEVRAWLVGALSAHVPLLVVTASGREAEDLTAELTAMMGDKVMYYPSWETLP 86 Query: 98 HERLSPGVDTVGAXXXXXXXXAHPEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLS 157 HERLSPGVD +G H D+ L VVVTA R L QP+ ++ ++PV+++ Sbjct: 87 HERLSPGVDIIGQQAKVL----HHLDS-----LDVVVTAARGLAQPLVNEVTGRDPVTVT 137 Query: 158 VGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITE 217 VG++ F+E+I LV +Y+RVD+V RGEFAVRGGI+D+F TA +PVRVEFWGDE+TE Sbjct: 138 VGEDYPFEELIDSLVFRSYSRVDLVAARGEFAVRGGIIDIFPTTANNPVRVEFWGDEVTE 197 Query: 218 MRMFSVADQRSIPEIEVSTLVAVACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDML 277 + F+VADQR+ + ++ + R L +T+++ + ++ ++ +L Sbjct: 198 ITTFAVADQRTYSDGQLKKVELYPARALPITDEIKKRAEALARTYGGNQ-----ALAQIL 252 Query: 278 AKLAEGIPTDGMEALLPVLRPDDHALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFL 337 K+AEGI DGME L+PVL + D+L EG VL+ DPE++RTR DL T EFL Sbjct: 253 GKVAEGISADGMETLIPVLTDSPLVTIVDKLPEGAHVLLVDPERIRTRVGDLKATDTEFL 312 Query: 338 EASWSVAAMGTDAPVDVEALG--GSGFAELEQVQTAASSSGHPWWTLS----QLSEESAT 391 EA W +AAMG D PVD + L S + LE ++ A P WTL+ S+++ T Sbjct: 313 EAGWELAAMGGDGPVDHKDLDLEPSSYRSLESLEVTAREHEIPLWTLTPPGMMASDDAET 372 Query: 392 -ELEVRAAPSARGHQKDIDDIFAMLRAHVSTGGYAVMVEPGTGTAHRMVERLAESDIPAA 450 L RG +K I + L AH GG AV + P R ++L E I Sbjct: 373 LPLSFGDLVRPRGDEKKISQLMEQLLAHTLAGGAAVYISPQKANCARFGDKLHERGIAHV 432 Query: 451 MLEPGAAPKLGVVGVLKGPLRDGVI-VPGAN---LVVVTETNLTGNRATAVEG-KRLAAK 505 G PK G V + + +GV+ VP + LVVVTET++TGNR + G KR AK Sbjct: 433 QGTEGMKPKAGAVTIYQAFSHNGVVFVPQDSETPLVVVTETDVTGNRVGDIAGAKRRKAK 492 Query: 506 RRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTV----GGARREYLVLEYASAKRGGGSD 561 +RN VDPLALTAGD VVH+ HGIGRFV+M ER V +RREY+VLEYA ++RGG D Sbjct: 493 KRNRVDPLALTAGDYVVHETHGIGRFVKMTEREVRTGDDTSRREYIVLEYAPSRRGGPPD 552 Query: 562 KLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKARKAVREIAGELVALYAKRQASP 621 +LYVPMDSLD LS+YVGG+ P +S++GG+DW TK KAR AV+EIA ELV LYAKR+A+P Sbjct: 553 QLYVPMDSLDLLSKYVGGEKPTVSKMGGADWKKTKKKARSAVKEIAAELVDLYAKRRAAP 612 Query: 622 GHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEKSIPMDRVICGDVGYGKTEIAV 681 GHAFAPD+PWQAEMED F + ET DQ+ AI VK DME+ +PMDRVI GDVGYGKTE+AV Sbjct: 613 GHAFAPDSPWQAEMEDNFPYVETEDQMLAIDAVKHDMEQPVPMDRVIIGDVGYGKTEVAV 672 Query: 682 RAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPVTVKGLSRFTDPAESRTVIEGM 741 RAAFKAVQDGKQVAVLVPTTLLA QH TF +RM GF +T++ LSRFT ++R +I+G+ Sbjct: 673 RAAFKAVQDGKQVAVLVPTTLLAQQHEATFRERMDGFGITIRQLSRFTPDKQAREIIKGL 732 Query: 742 ADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRSHVDVLTMSATPI 801 DGSVD+VIGTHRLLQTGV+WKDLGLV+VDEEQRFGVEHKEHIK+LR+HVDVLTMSATPI Sbjct: 733 VDGSVDIVIGTHRLLQTGVQWKDLGLVIVDEEQRFGVEHKEHIKALRAHVDVLTMSATPI 792 Query: 802 PRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRV 861 PRTLEMS++GIREM+TILTPP++R PVLTYVG +DKQVAAA+RRELLRDGQ FYVHNRV Sbjct: 793 PRTLEMSMSGIREMTTILTPPQDRRPVLTYVGAQEDKQVAAAIRRELLRDGQVFYVHNRV 852 Query: 862 SSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGFWQREFDILVCTTIVETGLDISN 921 SI++ A ++R+LVPEAR+VVAHGQM E+ LE+TVQGFW REFD+LVCTTIVETGLDI+N Sbjct: 853 KSIEERARQLRELVPEARIVVAHGQMSEEQLEKTVQGFWDREFDVLVCTTIVETGLDIAN 912 Query: 922 ANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNEL 981 ANTLIVE A GLSQLHQLRGRVGRSRER YAYFLYP LTET+Y+RL TIAQNN++ Sbjct: 913 ANTLIVENAHHMGLSQLHQLRGRVGRSRERAYAYFLYPKGQVLTETSYERLTTIAQNNDM 972 Query: 982 GAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKTV-TTP 1040 GAGMAVA+KDLE+RGAGNVLG EQSGH+AGVGFDLYVRLV EAVEA+RA ADGK + T Sbjct: 973 GAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVEEAVEAFRALADGKPLDATD 1032 Query: 1041 EEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXXXXTSDSGVAAVVDELIDRYGALPEP 1100 ++ ++R+DLPVD+H+P DYI S+ ++ + V++E+ DRYG LPEP Sbjct: 1033 QQSAEIRVDLPVDSHIPDDYIASERLRLEIYRKLAASRTEEDLRGVMEEMSDRYGPLPEP 1092 Query: 1101 XXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAPMDLPDSAQVRLKRMYPGGHYRATTST 1160 +GI D+ A V+L P++LPDS QVRLKR+YPG YR Sbjct: 1093 VLRLLSVTRLRHLARRAGIVDI-ALQGTRVKLHPLELPDSKQVRLKRLYPGSSYRPAAKA 1151 Query: 1161 VQVPIPRDGG--VGAPRIRDVELVQMVANLVTALAGKPQQDIGRTSLSEDD 1209 VQV +P+ G V +RD ELVQ VA+++ AL + + D+ +D+ Sbjct: 1152 VQVKVPKSGAGRVNDKELRDTELVQWVADVIAALCDEEEIDVTGAHSGKDN 1202 >tr|C0VT33|C0VT33_9CORY Tax_Id=548477 (mfd)SubName: Full=Transcription-repair coupling factor;[Corynebacterium glucuronolyticum ATCC 51867] Length = 1218 Score = 1246 bits (3224), Expect = 0.0 Identities = 663/1191 (55%), Positives = 835/1191 (70%), Gaps = 34/1191 (2%) Query: 38 DELTLVGPASARSFVASALAQQGPLLVVTATGREADDVTAELRGVFGEAVALFPSWETLP 97 + L + P R ++ AL+ PLLVVTA+GREA+D+TAEL + G+ V +PSWETLP Sbjct: 27 ETLHITAPDEVRPWLVGALSAHVPLLVVTASGREAEDLTAELTAMMGDKVMYYPSWETLP 86 Query: 98 HERLSPGVDTVGAXXXXXXXXAHPEDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLS 157 HERLSPGVD +G H D+ L VVVTA R L QP+ ++ ++PV+++ Sbjct: 87 HERLSPGVDIIGQQAKVL----HHLDS-----LDVVVTAARGLAQPLVNEVTGRDPVTVT 137 Query: 158 VGQEIGFDEVIARLVELAYTRVDMVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITE 217 VG++ F+E+I LV +Y+RVD+V RGEFAVRGGI+D+F TA +PVRVEFWGDE+TE Sbjct: 138 VGEDYPFEELIDSLVFRSYSRVDLVAARGEFAVRGGIIDIFPTTANNPVRVEFWGDEVTE 197 Query: 218 MRMFSVADQRSIPEIEVSTLVAVACRELLLTEDVXXXXXXXXXQHPASENTVTGSVIDML 277 + F+VADQR+ + ++ + R L +T+++ + ++ ++ +L Sbjct: 198 ITTFAVADQRTYSDGQLKKVELYPARALPITDEIKKRAEALARTYGGNQ-----ALAQIL 252 Query: 278 AKLAEGIPTDGMEALLPVLRPDDHALLTDQLAEGTPVLVCDPEKVRTRAADLIKTGREFL 337 K+AEGI DGME L+PVL + D+L EG VL+ DPE++RTR DL T EFL Sbjct: 253 GKVAEGISADGMETLIPVLTDSPLVTIVDKLPEGAHVLLVDPERIRTRVGDLKATDTEFL 312 Query: 338 EASWSVAAMGTDAPVDVEALG--GSGFAELEQVQTAASSSGHPWWTLS----QLSEESAT 391 EA W +AAMG D PVD + L S + LE ++ A P WTL+ S+++ T Sbjct: 313 EAGWELAAMGGDGPVDHKDLDLEPSSYRSLESLEVTAREHEIPLWTLTPPGMMASDDAET 372 Query: 392 -ELEVRAAPSARGHQKDIDDIFAMLRAHVSTGGYAVMVEPGTGTAHRMVERLAESDIPAA 450 L RG +K I + L AH GG AV + P R ++L E I Sbjct: 373 LPLSFGDLVRPRGDEKKISQLMEQLLAHTLAGGAAVYISPQKANCARFGDKLHERGIAHV 432 Query: 451 MLEPGAAPKLGVVGVLKGPLRDGVI-VPGAN---LVVVTETNLTGNRATAVEG-KRLAAK 505 G PK G V + + +GV+ VP + LVVVTET++TGNR + G KR AK Sbjct: 433 QGTEGMKPKAGAVTIYQAFSHNGVVFVPQDSETPLVVVTETDVTGNRVGDIAGAKRRKAK 492 Query: 506 RRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTV----GGARREYLVLEYASAKRGGGSD 561 +RN VDPLALTAGD VVH+ HGIGRFV+M ER V +RREY+VLEYA ++RGG D Sbjct: 493 KRNRVDPLALTAGDYVVHETHGIGRFVKMTEREVRTGDDTSRREYIVLEYAPSRRGGPPD 552 Query: 562 KLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKARKAVREIAGELVALYAKRQASP 621 +LYVPMDSLD LS+YVGG+ P +S++GG+DW TK KAR AV+EIA ELV LYAKR+A+P Sbjct: 553 QLYVPMDSLDLLSKYVGGEKPTVSKMGGADWKKTKKKARSAVKEIAAELVDLYAKRRAAP 612 Query: 622 GHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEKSIPMDRVICGDVGYGKTEIAV 681 GHAFAPD+PWQAEMED F + ET DQ+ AI VK DME+ +PMDRVI GDVGYGKTE+AV Sbjct: 613 GHAFAPDSPWQAEMEDNFPYVETEDQMLAIDAVKHDMEQPVPMDRVIIGDVGYGKTEVAV 672 Query: 682 RAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPVTVKGLSRFTDPAESRTVIEGM 741 RAAFKAVQDGKQVAVLVPTTLLA QH TF +RM GF +T++ LSRFT ++R +I+G+ Sbjct: 673 RAAFKAVQDGKQVAVLVPTTLLAQQHEATFRERMDGFGITIRQLSRFTPDKQAREIIKGL 732 Query: 742 ADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRSHVDVLTMSATPI 801 DGSVD+VIGTHRLLQTGV+WKDLGLV+VDEEQRFGVEHKEHIK+LR+HVDVLTMSATPI Sbjct: 733 VDGSVDIVIGTHRLLQTGVQWKDLGLVIVDEEQRFGVEHKEHIKALRAHVDVLTMSATPI 792 Query: 802 PRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQVAAALRRELLRDGQAFYVHNRV 861 PRTLEMS++GIREM+TILTPP++R PVLTYVG +DKQVAAA+RRELLRDGQ FYVHNRV Sbjct: 793 PRTLEMSMSGIREMTTILTPPQDRRPVLTYVGAQEDKQVAAAIRRELLRDGQVFYVHNRV 852 Query: 862 SSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGFWQREFDILVCTTIVETGLDISN 921 SI++ A ++R+LVPEAR+VVAHGQM E+ LE+TVQGFW REFD+LVCTTIVETGLDI+N Sbjct: 853 KSIEERARQLRELVPEARIVVAHGQMSEEQLEKTVQGFWDREFDVLVCTTIVETGLDIAN 912 Query: 922 ANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQAPLTETAYDRLATIAQNNEL 981 ANTLIVE A GLSQLHQLRGRVGRSRER YAYFLYP LTET+Y+RL TIAQNN++ Sbjct: 913 ANTLIVENAHHMGLSQLHQLRGRVGRSRERAYAYFLYPKGQVLTETSYERLTTIAQNNDM 972 Query: 982 GAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKTV-TTP 1040 GAGMAVA+KDLE+RGAGNVLG EQSGH+AGVGFDLYVRLV EAVEA+RA ADGK + T Sbjct: 973 GAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVEEAVEAFRALADGKPLDATD 1032 Query: 1041 EEPKDVRIDLPVDAHLPPDYIGSDXXXXXXXXXXXXXTSDSGVAAVVDELIDRYGALPEP 1100 ++ ++R+DLPVD+H+P DYI S+ ++ + V++E+ DRYG LPEP Sbjct: 1033 QQSAEIRVDLPVDSHIPDDYIASERLRLEIYRKLAASRTEEDLRGVMEEMSDRYGPLPEP 1092 Query: 1101 XXXXXXXXXXXXXXXXSGITDVSAPSSATVRLAPMDLPDSAQVRLKRMYPGGHYRATTST 1160 +GI D+ A V+L P++LPDS QVRLKR+YPG YR Sbjct: 1093 VLRLLSVTRLRHLARRAGIVDI-ALQGTRVKLHPLELPDSKQVRLKRLYPGSSYRPAAKA 1151 Query: 1161 VQVPIPRDGG--VGAPRIRDVELVQMVANLVTALAGKPQQDIGRTSLSEDD 1209 VQV +P+ G V + D ELVQ VA+++ AL + + D+ +D+ Sbjct: 1152 VQVKVPKSGAGRVNDKELSDTELVQWVADVIAALCDEEEIDVTGAHSGKDN 1202 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.317 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 8,720,153,049 Number of extensions: 364936675 Number of successful extensions: 1003319 Number of sequences better than 10.0: 8917 Number of HSP's gapped: 993883 Number of HSP's successfully gapped: 10531 Length of query: 1222 Length of database: 3,846,993,858 Length adjustment: 149 Effective length of query: 1073 Effective length of database: 2,166,988,611 Effective search space: 2325178779603 Effective search space used: 2325178779603 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 87 (38.1 bits)