BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_4487 (301 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HDK9|B2HDK9_MYCMM Tax_Id=216594 SubName: Full=Alternative R... 481 e-134 tr|A0QBU3|A0QBU3_MYCA1 Tax_Id=243243 SubName: Full=Sigma factor;... 383 e-104 tr|Q741Z1|Q741Z1_MYCPA Tax_Id=1770 SubName: Full=Putative unchar... 380 e-103 tr|C4EN17|C4EN17_STRRS Tax_Id=479432 SubName: Full=RNA polymeras... 329 3e-88 tr|A1TEH9|A1TEH9_MYCVP Tax_Id=350058 SubName: Full=RNA polymeras... 321 8e-86 tr|A4T6P5|A4T6P5_MYCGI Tax_Id=350054 SubName: Full=RNA polymeras... 320 1e-85 tr|Q1B408|Q1B408_MYCSS Tax_Id=164756 SubName: Full=RNA polymeras... 320 2e-85 tr|A3Q5I8|A3Q5I8_MYCSJ Tax_Id=164757 SubName: Full=RNA polymeras... 320 2e-85 tr|A1UL40|A1UL40_MYCSK Tax_Id=189918 SubName: Full=RNA polymeras... 320 2e-85 tr|A1TG18|A1TG18_MYCVP Tax_Id=350058 SubName: Full=RNA polymeras... 320 2e-85 tr|C1WNG5|C1WNG5_9ACTO Tax_Id=479435 SubName: Full=RNA polymeras... 317 1e-84 tr|B1MIQ2|B1MIQ2_MYCA9 Tax_Id=561007 SubName: Full=Putative sigm... 316 2e-84 tr|A0R3E5|A0R3E5_MYCS2 Tax_Id=246196 SubName: Full=RNA polymeras... 311 8e-83 tr|Q1B410|Q1B410_MYCSS Tax_Id=164756 SubName: Full=RNA polymeras... 301 8e-80 tr|A3Q5I6|A3Q5I6_MYCSJ Tax_Id=164757 SubName: Full=RNA polymeras... 301 8e-80 tr|A1UL38|A1UL38_MYCSK Tax_Id=189918 SubName: Full=RNA polymeras... 301 8e-80 tr|A0R784|A0R784_MYCS2 Tax_Id=246196 SubName: Full=RNA polymeras... 279 3e-73 tr|B1MKC2|B1MKC2_MYCA9 Tax_Id=561007 SubName: Full=Putative sigm... 277 1e-72 tr|D0LAS0|D0LAS0_GORB4 Tax_Id=526226 SubName: Full=RNA polymeras... 267 1e-69 tr|C2AMU6|C2AMU6_TSUPA Tax_Id=521096 SubName: Full=RNA polymeras... 229 2e-58 tr|Q0SAX1|Q0SAX1_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,... 218 7e-55 tr|C9N6H8|C9N6H8_9ACTO Tax_Id=591167 SubName: Full=RNA polymeras... 211 1e-52 tr|C8XB44|C8XB44_NAKMY Tax_Id=479431 SubName: Full=RNA polymeras... 210 2e-52 tr|C1AZY5|C1AZY5_RHOOB Tax_Id=632772 SubName: Full=RNA polymeras... 210 2e-52 tr|C4DK09|C4DK09_9ACTO Tax_Id=446470 SubName: Full=RNA polymeras... 210 2e-52 tr|B5GN61|B5GN61_STRCL Tax_Id=443255 SubName: Full=Sigma factor;... 210 2e-52 tr|Q9RDI5|Q9RDI5_STRCO Tax_Id=1902 SubName: Full=Putative sigma ... 208 7e-52 tr|Q5YXM9|Q5YXM9_NOCFA Tax_Id=37329 SubName: Full=Putative sigma... 208 7e-52 tr|C4DRB7|C4DRB7_9ACTO Tax_Id=446470 SubName: Full=RNA polymeras... 206 2e-51 tr|A4FJ19|A4FJ19_SACEN Tax_Id=405948 SubName: Full=Sigma factor,... 206 3e-51 tr|A3TNU6|A3TNU6_9MICO Tax_Id=313589 SubName: Full=Putative sigm... 206 4e-51 tr|B5H7F5|B5H7F5_STRPR Tax_Id=457429 SubName: Full=Sigma factor;... 204 8e-51 tr|C5C3K0|C5C3K0_BEUC1 Tax_Id=471853 SubName: Full=RNA polymeras... 203 2e-50 tr|C1WJ63|C1WJ63_9ACTO Tax_Id=479435 SubName: Full=RNA polymeras... 203 2e-50 tr|C1WNW3|C1WNW3_9ACTO Tax_Id=479435 SubName: Full=RNA polymeras... 202 3e-50 tr|C1WJD6|C1WJD6_9ACTO Tax_Id=479435 SubName: Full=RNA polymeras... 191 9e-47 tr|C7Q3S5|C7Q3S5_CATAD Tax_Id=479433 SubName: Full=RNA polymeras... 189 3e-46 tr|C5BW92|C5BW92_BEUC1 Tax_Id=471853 SubName: Full=RNA polymeras... 189 4e-46 tr|A1SDT9|A1SDT9_NOCSJ Tax_Id=196162 SubName: Full=Sigma-70 regi... 188 6e-46 tr|A4XBA8|A4XBA8_SALTO Tax_Id=369723 SubName: Full=Sigma-70, reg... 182 5e-44 tr|D1C9S1|D1C9S1_9CHLR Tax_Id=479434 SubName: Full=RNA polymeras... 181 7e-44 tr|B5HZH4|B5HZH4_9ACTO Tax_Id=463191 SubName: Full=ECF-sigma fac... 178 6e-43 tr|B1W5D6|B1W5D6_STRGG Tax_Id=455632 SubName: Full=Putative RNA ... 176 4e-42 tr|Q826V7|Q826V7_STRAW Tax_Id=33903 (sig55)SubName: Full=Putativ... 174 9e-42 tr|Q1ATI5|Q1ATI5_RUBXD Tax_Id=266117 SubName: Full=RNA polymeras... 173 2e-41 tr|Q9K3H7|Q9K3H7_STRCO Tax_Id=1902 SubName: Full=Putative ECF-si... 173 3e-41 tr|B5H7N6|B5H7N6_STRPR Tax_Id=457429 SubName: Full=RNA polymeras... 173 3e-41 tr|C4EM76|C4EM76_STRRS Tax_Id=479432 SubName: Full=RNA polymeras... 172 4e-41 tr|A3KKK3|A3KKK3_STRAM Tax_Id=278992 SubName: Full=Putative ECF-... 172 4e-41 tr|B2T583|B2T583_BURPP Tax_Id=398527 SubName: Full=RNA polymeras... 172 6e-41 >tr|B2HDK9|B2HDK9_MYCMM Tax_Id=216594 SubName: Full=Alternative RNA polymerase sigma factor;[Mycobacterium marinum] Length = 301 Score = 481 bits (1238), Expect = e-134 Identities = 257/301 (85%), Positives = 258/301 (85%) Query: 1 VTPPSHSDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSY 60 +TPPSHSDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSY Sbjct: 1 MTPPSHSDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSY 60 Query: 61 LAQLVTRQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETL 120 LAQLVTRQSLNALRAGARRREEYVG ADLVLAESVSMAMLVLLETL Sbjct: 61 LAQLVTRQSLNALRAGARRREEYVGPWLPEPLLLDESDPSADLVLAESVSMAMLVLLETL 120 Query: 121 TPDERAVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXX 180 TPDERAVFVLREVFGFDYDEIADAVGKPAPT KKYGDVDPQRN Sbjct: 121 TPDERAVFVLREVFGFDYDEIADAVGKPAPTVRQVAHRARAHIQARRKKYGDVDPQRNAQ 180 Query: 181 XXXXXXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAA 240 SGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAA Sbjct: 181 LTAQFLQTAASGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAA 240 Query: 241 TELQVELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 TELQVELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR Sbjct: 241 TELQVELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 Query: 301 G 301 G Sbjct: 301 G 301 >tr|A0QBU3|A0QBU3_MYCA1 Tax_Id=243243 SubName: Full=Sigma factor;[Mycobacterium avium] Length = 308 Score = 383 bits (984), Expect = e-104 Identities = 207/307 (67%), Positives = 232/307 (75%), Gaps = 6/307 (1%) Query: 1 VTPPSHSDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSY 60 +T EHA+RFTLLRPLLFTIAYE+LGSATE+DDVLQ+SYLRW+ VDL+ VRDTKSY Sbjct: 2 MTQAPTGSEHADRFTLLRPLLFTIAYEMLGSATEADDVLQDSYLRWSTVDLATVRDTKSY 61 Query: 61 LAQLVTRQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETL 120 LAQLVTRQ+LNALRAGARRREEYVG D+VLAES+SMAMLVLLETL Sbjct: 62 LAQLVTRQALNALRAGARRREEYVGPWLPEPLLLDEQDPSTDVVLAESISMAMLVLLETL 121 Query: 121 TPDERAVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGD----VDPQ 176 +PDERAVFVLREVFGFDYDEIA+AVGKPAPT K++ +DP+ Sbjct: 122 SPDERAVFVLREVFGFDYDEIAEAVGKPAPTVRQVARRAREHVRARRKRHPGAGQAIDPK 181 Query: 177 RNXXXXXXXXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLI 236 RN SGDVEALMAMLAPDATW ADSGG VSAAR+PVVGAE+VARAITGL Sbjct: 182 RNAELTAQFLATAASGDVEALMAMLAPDATWTADSGGVVSAARRPVVGAEKVARAITGLF 241 Query: 237 RKAA--TELQVELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVAR 294 RKAA L+V+ VTCN APAVL YLG +LEGVIT+EI DKITNFYVMRNP KL A+A Sbjct: 242 RKAAEYATLRVDTVTCNGAPAVLLYLGDRLEGVITVEIAADKITNFYVMRNPHKLAALAT 301 Query: 295 AHEISRG 301 A ++SRG Sbjct: 302 ARDVSRG 308 >tr|Q741Z1|Q741Z1_MYCPA Tax_Id=1770 SubName: Full=Putative uncharacterized protein;[Mycobacterium paratuberculosis] Length = 307 Score = 380 bits (975), Expect = e-103 Identities = 205/299 (68%), Positives = 229/299 (76%), Gaps = 6/299 (2%) Query: 9 EHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTRQ 68 EHA+RFTLLRPLLFTIAYE+LGSATE+DDVLQ+SYLRW+ VDL+ VRDTKSYLAQLVTRQ Sbjct: 9 EHADRFTLLRPLLFTIAYEMLGSATEADDVLQDSYLRWSTVDLATVRDTKSYLAQLVTRQ 68 Query: 69 SLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAVF 128 +LNALRAGARRREEYVG D+VLAES+SMAMLVLLETL+PDERAVF Sbjct: 69 ALNALRAGARRREEYVGPWLPEPLLLDEQDPSTDVVLAESISMAMLVLLETLSPDERAVF 128 Query: 129 VLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGD----VDPQRNXXXXXX 184 VLREVFGFDYDEIA+AVGKPA T K++ +DP+RN Sbjct: 129 VLREVFGFDYDEIAEAVGKPASTVRQVAHRAREHVRARRKRHPGAGQAIDPKRNAELTAQ 188 Query: 185 XXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAA--TE 242 SGDVEALMAMLAPDATW ADSGG VSAAR+PVVGAE+VARAITGL RKAA Sbjct: 189 FLATAASGDVEALMAMLAPDATWTADSGGVVSAARRPVVGAEKVARAITGLFRKAAEYAT 248 Query: 243 LQVELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISRG 301 L+V+ VTCN APAVL YLG +LEGVIT+EI DKITNFYVMRNP KL A+A A ++SRG Sbjct: 249 LRVDTVTCNGAPAVLLYLGDRLEGVITVEIAADKITNFYVMRNPHKLAALATARDVSRG 307 >tr|C4EN17|C4EN17_STRRS Tax_Id=479432 SubName: Full=RNA polymerase, sigma-24 subunit, RpoE;[Streptosporangium roseum DSM 43021] Length = 293 Score = 329 bits (843), Expect = 3e-88 Identities = 174/294 (59%), Positives = 207/294 (70%), Gaps = 3/294 (1%) Query: 7 SDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVT 66 ++EHAERFTLLRPLLFTI YEILGSATESDDVLQ+ YLRWA VDL+ VRDTKSYLA+LVT Sbjct: 3 TNEHAERFTLLRPLLFTIVYEILGSATESDDVLQDGYLRWADVDLATVRDTKSYLARLVT 62 Query: 67 RQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERA 126 RQ+LNALRAGARRRE+YVG AD+VLAESVSMAMLVLLETLTPDERA Sbjct: 63 RQALNALRAGARRREDYVGVWLPEPLLLDEHDASADVVLAESVSMAMLVLLETLTPDERA 122 Query: 127 VFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXX 186 VFVLREVFGFDYDEIA AVGK T K++ P + Sbjct: 123 VFVLREVFGFDYDEIAGAVGKSVVTARQVAHRAREHVAARRKRFEPAGPAKTARITGQFM 182 Query: 187 XXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVE 246 +GD+E L+++LAPD TW DSGGKV A R+PV+GAE+VA + G+ R + ++E Sbjct: 183 AAVTTGDMEGLLSLLAPDVTWTTDSGGKVIAVRRPVMGAEKVAALLLGIFR---ADTRIE 239 Query: 247 LVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 V CN+ PA++ Y G LEGV +E+VG KIT+FY +RNPDKL A+A +ISR Sbjct: 240 SVNCNNTPALVAYSGDHLEGVFLVEVVGGKITHFYAIRNPDKLLALAAPRQISR 293 >tr|A1TEH9|A1TEH9_MYCVP Tax_Id=350058 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium vanbaalenii] Length = 293 Score = 321 bits (822), Expect = 8e-86 Identities = 174/292 (59%), Positives = 206/292 (70%), Gaps = 1/292 (0%) Query: 9 EHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTRQ 68 EHA+RFT LRPLLFTIAYEILGSATESDDVLQESYLRWA VDL+AV DTK+YLA+LVTRQ Sbjct: 3 EHADRFTHLRPLLFTIAYEILGSATESDDVLQESYLRWAEVDLAAVTDTKAYLARLVTRQ 62 Query: 69 SLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAVF 128 +LNALRA +RRRE+YVG AD+VLAESVSMAMLV+LETL+PDERAVF Sbjct: 63 ALNALRAQSRRREDYVGPWLPEPLLTEADPS-ADVVLAESVSMAMLVVLETLSPDERAVF 121 Query: 129 VLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXXX 188 VLREVFGF +DEIA +GK K++ VDP+ + Sbjct: 122 VLREVFGFGHDEIAATLGKSTEAVRQTAHRARAHVQSRRKRFEPVDPKVSTEITTRFFTA 181 Query: 189 XXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVELV 248 +GD++ LMAMLAPD W ADS GKVSAAR+PV GA+RVAR I G +R+A + +VE Sbjct: 182 AATGDLDGLMAMLAPDVVWTADSDGKVSAARRPVAGADRVARLIMGFVRQAGADGRVEPA 241 Query: 249 TCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 NSAPA++ YLG LEGV+T E+V +ITNFY MRNP+KL V +ISR Sbjct: 242 VYNSAPALVLYLGDNLEGVVTFEVVDGRITNFYAMRNPEKLAGVKVPRQISR 293 >tr|A4T6P5|A4T6P5_MYCGI Tax_Id=350054 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium gilvum] Length = 298 Score = 320 bits (820), Expect = 1e-85 Identities = 175/293 (59%), Positives = 204/293 (69%), Gaps = 1/293 (0%) Query: 8 DEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTR 67 DEHAERFT LRPLLFTIAYEILGSATESDDVLQESYLRWA VDL+ V DTK+YLA+LVTR Sbjct: 7 DEHAERFTQLRPLLFTIAYEILGSATESDDVLQESYLRWAEVDLATVTDTKAYLARLVTR 66 Query: 68 QSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAV 127 Q+LN LRA +RRRE+YVG AD+VLAESVSMAMLV+LETL+PDERAV Sbjct: 67 QALNTLRAQSRRREDYVGPWLPEPLLTEADPS-ADVVLAESVSMAMLVVLETLSPDERAV 125 Query: 128 FVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXX 187 FVLREVFGF +DEIA +GK K++ VDP+ + Sbjct: 126 FVLREVFGFGHDEIAATLGKSTAAVRQIAHRAREHVQSRRKRFEPVDPKTSGEITMTFFA 185 Query: 188 XXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVEL 247 +GD++ALMAMLAPD W ADS GKVSAAR+PV GA++VAR I G +R A E +VE Sbjct: 186 AAATGDLDALMAMLAPDVVWTADSDGKVSAARRPVEGADKVARLILGFVRLAGGEARVEP 245 Query: 248 VTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 NSAPA++ Y G LEGV+T E+ +ITNFY MRNP+KLT V A ISR Sbjct: 246 AFYNSAPALVLYTGDVLEGVVTFEVADGRITNFYAMRNPEKLTGVMVARTISR 298 >tr|Q1B408|Q1B408_MYCSS Tax_Id=164756 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 299 Score = 320 bits (819), Expect = 2e-85 Identities = 171/296 (57%), Positives = 203/296 (68%) Query: 5 SHSDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQL 64 S + EHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWA VDL V DTK+YLAQL Sbjct: 2 STTTEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAEVDLDTVHDTKAYLAQL 61 Query: 65 VTRQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDE 124 VTRQ+LNALRA +RRRE+Y+G AD+VLAESVSMAMLV+LETLTPDE Sbjct: 62 VTRQALNALRAQSRRREDYIGPWLPEPLLVQSKDAEADVVLAESVSMAMLVVLETLTPDE 121 Query: 125 RAVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXX 184 RAVFVLREVFGF +DEIA AVGK K++ VDP+ + Sbjct: 122 RAVFVLREVFGFSHDEIAAAVGKSTTAVRQMAHRAREHVQSRRKRFEPVDPKTSTEITMR 181 Query: 185 XXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQ 244 +GD++ LM +LAPD W ADS GK SAAR+PV GAERV R + GL+R A + Sbjct: 182 FFAAASTGDLDGLMELLAPDVVWTADSAGKRSAARRPVTGAERVGRLVLGLLRAAGEAGR 241 Query: 245 VELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 +E N+APA+ +LG EG++T+EIV +I++FY MRNPDKL V EI+R Sbjct: 242 IEPAVYNNAPALKLFLGDSFEGIVTVEIVDGRISHFYAMRNPDKLVGVDVPREITR 297 >tr|A3Q5I8|A3Q5I8_MYCSJ Tax_Id=164757 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 299 Score = 320 bits (819), Expect = 2e-85 Identities = 171/296 (57%), Positives = 203/296 (68%) Query: 5 SHSDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQL 64 S + EHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWA VDL V DTK+YLAQL Sbjct: 2 STTTEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAEVDLDTVHDTKAYLAQL 61 Query: 65 VTRQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDE 124 VTRQ+LNALRA +RRRE+Y+G AD+VLAESVSMAMLV+LETLTPDE Sbjct: 62 VTRQALNALRAQSRRREDYIGPWLPEPLLVQSKDAEADVVLAESVSMAMLVVLETLTPDE 121 Query: 125 RAVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXX 184 RAVFVLREVFGF +DEIA AVGK K++ VDP+ + Sbjct: 122 RAVFVLREVFGFSHDEIAAAVGKSTTAVRQMAHRAREHVQSRRKRFEPVDPKTSTEITMR 181 Query: 185 XXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQ 244 +GD++ LM +LAPD W ADS GK SAAR+PV GAERV R + GL+R A + Sbjct: 182 FFAAASTGDLDGLMELLAPDVVWTADSAGKRSAARRPVTGAERVGRLVLGLLRAAGEAGR 241 Query: 245 VELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 +E N+APA+ +LG EG++T+EIV +I++FY MRNPDKL V EI+R Sbjct: 242 IEPAVYNNAPALKLFLGDSFEGIVTVEIVDGRISHFYAMRNPDKLVGVDVPREITR 297 >tr|A1UL40|A1UL40_MYCSK Tax_Id=189918 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 299 Score = 320 bits (819), Expect = 2e-85 Identities = 171/296 (57%), Positives = 203/296 (68%) Query: 5 SHSDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQL 64 S + EHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWA VDL V DTK+YLAQL Sbjct: 2 STTTEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAEVDLDTVHDTKAYLAQL 61 Query: 65 VTRQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDE 124 VTRQ+LNALRA +RRRE+Y+G AD+VLAESVSMAMLV+LETLTPDE Sbjct: 62 VTRQALNALRAQSRRREDYIGPWLPEPLLVQSKDAEADVVLAESVSMAMLVVLETLTPDE 121 Query: 125 RAVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXX 184 RAVFVLREVFGF +DEIA AVGK K++ VDP+ + Sbjct: 122 RAVFVLREVFGFSHDEIAAAVGKSTTAVRQMAHRAREHVQSRRKRFEPVDPKTSTEITMR 181 Query: 185 XXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQ 244 +GD++ LM +LAPD W ADS GK SAAR+PV GAERV R + GL+R A + Sbjct: 182 FFAAASTGDLDGLMELLAPDVVWTADSAGKRSAARRPVTGAERVGRLVLGLLRAAGEAGR 241 Query: 245 VELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 +E N+APA+ +LG EG++T+EIV +I++FY MRNPDKL V EI+R Sbjct: 242 IEPAVYNNAPALKLFLGDSFEGIVTVEIVDGRISHFYAMRNPDKLVGVDVPREITR 297 >tr|A1TG18|A1TG18_MYCVP Tax_Id=350058 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium vanbaalenii] Length = 300 Score = 320 bits (819), Expect = 2e-85 Identities = 171/296 (57%), Positives = 205/296 (69%), Gaps = 2/296 (0%) Query: 7 SDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVT 66 +DEH ERFT+LRPLLFTIAYEILGSATES+DVLQ+SYLRWA VDL+ VRDTKSYLAQLVT Sbjct: 5 TDEHGERFTVLRPLLFTIAYEILGSATESEDVLQDSYLRWADVDLATVRDTKSYLAQLVT 64 Query: 67 RQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERA 126 R++LNALRA +RRREEYVG AD+VLAESVSMAMLVLLETLTPDERA Sbjct: 65 REALNALRARSRRREEYVGPWLPEPLLLDERDASADIVLAESVSMAMLVLLETLTPDERA 124 Query: 127 VFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXX 186 VFVLREVFGFDYDEIA AVG+ K++G VD +R Sbjct: 125 VFVLREVFGFDYDEIAGAVGRSTQAVRQIAHRAKEHVHARRKRFGPVDSRRTTQITEQFL 184 Query: 187 XXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIR--KAATELQ 244 +GD+E L++MLAP ATW AD GGK +A R+PVVGA +VA + + + + +++ Sbjct: 185 TAAATGDMEELVSMLAPGATWTADHGGKATAVRRPVVGARKVAAIMARVFQAVRKTPQMR 244 Query: 245 VELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 +E NSAPAV+ Y LEGV+ E+V DKITN Y MRNPDKLT + +I+R Sbjct: 245 LETAVYNSAPAVVVYTEDHLEGVLLFEVVDDKITNLYAMRNPDKLTGITIPRKITR 300 >tr|C1WNG5|C1WNG5_9ACTO Tax_Id=479435 SubName: Full=RNA polymerase, sigma-24 subunit, RpoE;[Kribbella flavida DSM 17836] Length = 320 Score = 317 bits (812), Expect = 1e-84 Identities = 168/299 (56%), Positives = 207/299 (69%), Gaps = 2/299 (0%) Query: 4 PSHSDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQ 63 P+ +DEHAERFTLLRPLLFTI YE+LGSATE+DDVLQ+SYLRWA VDL+ VRDTKSYLA+ Sbjct: 22 PATADEHAERFTLLRPLLFTIVYEVLGSATEADDVLQDSYLRWAEVDLTTVRDTKSYLAR 81 Query: 64 LVTRQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPD 123 LVTRQ+LNA+RAGARRRE+YVG D+VLAESVSMAMLV+LETL+P Sbjct: 82 LVTRQALNAVRAGARRREDYVGPWLPEPLLVDESDLSNDVVLAESVSMAMLVVLETLSPS 141 Query: 124 ERAVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXX 183 ERAVFVLREVFGF + ++A+AVGK T K++ D Sbjct: 142 ERAVFVLREVFGFSHHDVAEAVGKSVATVRQVAHRAREHVQARRKRFEPADAATTAQVTK 201 Query: 184 XXXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRK--AAT 241 +GD+E L+++LAPDATW AD GGK +A R+PVVGAE+VA I L RK Sbjct: 202 QFLTAAGTGDLEGLLSLLAPDATWTADGGGKTTATRRPVVGAEKVAACIVSLFRKGQGLP 261 Query: 242 ELQVELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 +L++ +VTCNS+PA++ G ++EGV +EIV KIT+FY +RNPDKL AV ISR Sbjct: 262 DLRIAMVTCNSSPALVASRGDRMEGVFLMEIVDRKITHFYAIRNPDKLQAVTVPRSISR 320 >tr|B1MIQ2|B1MIQ2_MYCA9 Tax_Id=561007 SubName: Full=Putative sigma factor;[Mycobacterium abscessus] Length = 297 Score = 316 bits (809), Expect = 2e-84 Identities = 168/295 (56%), Positives = 197/295 (66%) Query: 6 HSDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLV 65 +SDEHAERFTLLRPLLFTI YEILGSATESDDVLQ+SYLRWA VDL+ VRDTKSYLAQLV Sbjct: 3 NSDEHAERFTLLRPLLFTIVYEILGSATESDDVLQDSYLRWAQVDLATVRDTKSYLAQLV 62 Query: 66 TRQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDER 125 TRQ+L ALR RRRE+Y+G AD++LAESVSMAML+LLETLTPDER Sbjct: 63 TRQALKALRTSVRRREDYIGPWLPEPLLLDEHDGSADVLLAESVSMAMLILLETLTPDER 122 Query: 126 AVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXX 185 AVFVLREVFGF YDEIA AV K A K++ +D + + Sbjct: 123 AVFVLREVFGFGYDEIAGAVSKSATAVRQIAHRAREHVHARRKRFDPLDAKESTRIAEQF 182 Query: 186 XXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQV 245 +GDVE LMA+LAPDATW+AD G+ AAR+P+ GA ++AR G RK + + Sbjct: 183 LLATETGDVEGLMALLAPDATWIADGNGRAGAARRPLTGAGKLARIFAGPFRKGMADRRT 242 Query: 246 ELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 E+V N+APAV Y G LE VIT+EI KIT Y + NPDKL A A +SR Sbjct: 243 EIVIANAAPAVAVYAGDALEVVITMEIADGKITRLYAVANPDKLVAAATTRMVSR 297 >tr|A0R3E5|A0R3E5_MYCS2 Tax_Id=246196 SubName: Full=RNA polymerase sigma-70 factor, TIGR02957 family protein;[Mycobacterium smegmatis] Length = 301 Score = 311 bits (796), Expect = 8e-83 Identities = 171/295 (57%), Positives = 201/295 (68%), Gaps = 1/295 (0%) Query: 6 HSDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLV 65 +S EHAERFT LRPLLFTIAYEILG+ATESDDVLQESYLRWA VDL+ V DTK+YLA+LV Sbjct: 8 NSTEHAERFTALRPLLFTIAYEILGTATESDDVLQESYLRWAEVDLATVTDTKAYLAKLV 67 Query: 66 TRQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDER 125 TRQSLNALRA +R REEYVG +D+VLAESVSMAMLV+LETLTPDER Sbjct: 68 TRQSLNALRARSRLREEYVG-PWLPEPLLVAEDASSDVVLAESVSMAMLVVLETLTPDER 126 Query: 126 AVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXX 185 AVFVL +VFGF +DEIA +GK A K++ VDPQ + Sbjct: 127 AVFVLHDVFGFSHDEIASTIGKSAAAVRQMAHRARNHVQARRKRFEPVDPQVSMEITQRF 186 Query: 186 XXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQV 245 +GD++ALM +LAPD W ADS GK SAAR+PV GA+ VAR ++GL+R +V Sbjct: 187 FTAASTGDIDALMELLAPDVVWTADSAGKRSAARRPVSGADAVARLVSGLVRLGGEGARV 246 Query: 246 ELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 E N+APA+ YLG EGVIT+EIV +IT+FY MRNPDKL V ISR Sbjct: 247 EPAMYNNAPALKLYLGDSFEGVITIEIVDGRITHFYAMRNPDKLAGVDIPRVISR 301 >tr|Q1B410|Q1B410_MYCSS Tax_Id=164756 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 299 Score = 301 bits (770), Expect = 8e-80 Identities = 162/295 (54%), Positives = 197/295 (66%), Gaps = 3/295 (1%) Query: 9 EHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTRQ 68 EHAERFT LRPLLFTIAYEILGSATESDDVLQ+S+LRWA VDL+ V DT+SYLAQLVTRQ Sbjct: 4 EHAERFTSLRPLLFTIAYEILGSATESDDVLQDSFLRWADVDLATVHDTRSYLAQLVTRQ 63 Query: 69 SLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAVF 128 +LNA+R ARRRE+YVG +D+VLAESVSMA LV+LETLTPDERAVF Sbjct: 64 ALNAVRTNARRREDYVGPWLPEPLLVDDGDAASDVVLAESVSMARLVVLETLTPDERAVF 123 Query: 129 VLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXXX 188 VLREVFGFD+ EIA+AVGK K++G D Sbjct: 124 VLREVFGFDHAEIAEAVGKSVGAVRQMAYRAREHVHARRKRFGPADAADAAKVTEQFMTA 183 Query: 189 XXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIR---KAATELQV 245 +GDVE L+A+LAPDA W+ DSGG+ A R+PV+GA++VA I G R K +L++ Sbjct: 184 AATGDVEGLLALLAPDAVWITDSGGRAKAIRRPVLGAKKVAALIAGFFRAAPKQVPDLRL 243 Query: 246 ELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 E T N+ PAVL G ++EG+I +++V +I NFY M NPDKLT + A I R Sbjct: 244 ETATYNNTPAVLVRSGDRVEGMILIDVVDGRIANFYAMANPDKLTGIGVARTIRR 298 >tr|A3Q5I6|A3Q5I6_MYCSJ Tax_Id=164757 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 299 Score = 301 bits (770), Expect = 8e-80 Identities = 162/295 (54%), Positives = 197/295 (66%), Gaps = 3/295 (1%) Query: 9 EHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTRQ 68 EHAERFT LRPLLFTIAYEILGSATESDDVLQ+S+LRWA VDL+ V DT+SYLAQLVTRQ Sbjct: 4 EHAERFTSLRPLLFTIAYEILGSATESDDVLQDSFLRWADVDLATVHDTRSYLAQLVTRQ 63 Query: 69 SLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAVF 128 +LNA+R ARRRE+YVG +D+VLAESVSMA LV+LETLTPDERAVF Sbjct: 64 ALNAVRTNARRREDYVGPWLPEPLLVDDGDAASDVVLAESVSMARLVVLETLTPDERAVF 123 Query: 129 VLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXXX 188 VLREVFGFD+ EIA+AVGK K++G D Sbjct: 124 VLREVFGFDHAEIAEAVGKSVGAVRQMAYRAREHVHARRKRFGPADAADAAKVTEQFMTA 183 Query: 189 XXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIR---KAATELQV 245 +GDVE L+A+LAPDA W+ DSGG+ A R+PV+GA++VA I G R K +L++ Sbjct: 184 AATGDVEGLLALLAPDAVWITDSGGRAKAIRRPVLGAKKVAALIAGFFRAAPKQVPDLRL 243 Query: 246 ELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 E T N+ PAVL G ++EG+I +++V +I NFY M NPDKLT + A I R Sbjct: 244 ETATYNNTPAVLVRSGDRVEGMILIDVVDGRIANFYAMANPDKLTGIGVARTIRR 298 >tr|A1UL38|A1UL38_MYCSK Tax_Id=189918 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 299 Score = 301 bits (770), Expect = 8e-80 Identities = 162/295 (54%), Positives = 197/295 (66%), Gaps = 3/295 (1%) Query: 9 EHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTRQ 68 EHAERFT LRPLLFTIAYEILGSATESDDVLQ+S+LRWA VDL+ V DT+SYLAQLVTRQ Sbjct: 4 EHAERFTSLRPLLFTIAYEILGSATESDDVLQDSFLRWADVDLATVHDTRSYLAQLVTRQ 63 Query: 69 SLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAVF 128 +LNA+R ARRRE+YVG +D+VLAESVSMA LV+LETLTPDERAVF Sbjct: 64 ALNAVRTNARRREDYVGPWLPEPLLVDDGDAASDVVLAESVSMARLVVLETLTPDERAVF 123 Query: 129 VLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXXX 188 VLREVFGFD+ EIA+AVGK K++G D Sbjct: 124 VLREVFGFDHAEIAEAVGKSVGAVRQMAYRAREHVHARRKRFGPADAADAAKVTEQFMTA 183 Query: 189 XXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIR---KAATELQV 245 +GDVE L+A+LAPDA W+ DSGG+ A R+PV+GA++VA I G R K +L++ Sbjct: 184 AATGDVEGLLALLAPDAVWITDSGGRAKAIRRPVLGAKKVAALIAGFFRAAPKQVPDLRL 243 Query: 246 ELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 E T N+ PAVL G ++EG+I +++V +I NFY M NPDKLT + A I R Sbjct: 244 ETATYNNTPAVLVRSGDRVEGMILIDVVDGRIANFYAMANPDKLTGIGVARTIRR 298 >tr|A0R784|A0R784_MYCS2 Tax_Id=246196 SubName: Full=RNA polymerase sigma factor, sigma-70 family protein;[Mycobacterium smegmatis] Length = 296 Score = 279 bits (713), Expect = 3e-73 Identities = 158/294 (53%), Positives = 190/294 (64%), Gaps = 4/294 (1%) Query: 8 DEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTR 67 D+H ERFT+LRPLLFTIAYEILGS TE+DDVLQ+SYL WA VDL+AVRDTKSYLAQLVTR Sbjct: 6 DDHTERFTMLRPLLFTIAYEILGSVTEADDVLQDSYLNWAKVDLAAVRDTKSYLAQLVTR 65 Query: 68 QSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAV 127 Q+L A R ARRRE YVG AD+VLAESVSMAMLV+LETLTPDERAV Sbjct: 66 QALKAQRTSARRRESYVGPWLPEPLLLDDRDASADVVLAESVSMAMLVVLETLTPDERAV 125 Query: 128 FVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXX 187 FVL +VFGFDY EI++AVGK K++ VD + Sbjct: 126 FVLHDVFGFDYAEISEAVGKSTAAVRQIAHRAREHVHARRKRFDPVDSDQAAEITQQFLT 185 Query: 188 XXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVEL 247 +GD+ L+A+LAPD + D GG AAR+P+VGAERVA AI +R +L+ E+ Sbjct: 186 AASTGDMAGLVALLAPDVVTITDGGGLPGAARRPLVGAERVAGAI---VRGMRRDLRFEI 242 Query: 248 VTCNSAPAVLFYLG-GQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 VT N APAV QL G++TLEI +IT+ Y + NPDKL A+ I+R Sbjct: 243 VTANGAPAVALRTDEDQLLGLVTLEIHDGRITSLYAIANPDKLAALDGPRVITR 296 >tr|B1MKC2|B1MKC2_MYCA9 Tax_Id=561007 SubName: Full=Putative sigma factor;[Mycobacterium abscessus] Length = 301 Score = 277 bits (709), Expect = 1e-72 Identities = 157/298 (52%), Positives = 189/298 (63%), Gaps = 7/298 (2%) Query: 9 EHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTRQ 68 +HAE FT LRPLLFTIAYE+LGSATE+DDVLQESYLRWA VDL V DTK+YLAQ+V+RQ Sbjct: 5 DHAELFTHLRPLLFTIAYEMLGSATEADDVLQESYLRWAQVDLDTVTDTKAYLAQIVSRQ 64 Query: 69 SLNALRAGARRREEYVG----XXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDE 124 +LN LR +RRREEYVG D+VLAESVSMAMLV+LETL PDE Sbjct: 65 ALNTLRTNSRRREEYVGPWLPEPVRVAYDDSDKDASTDVVLAESVSMAMLVVLETLAPDE 124 Query: 125 RAVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXX 184 RAVFV+REVFGFDY EIA VGK +++ D Q Sbjct: 125 RAVFVMREVFGFDYSEIASTVGKSEVAVRQMAHRARAHVQSRRRRFTPTDRQAE-ELTTK 183 Query: 185 XXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAA--TE 242 GDV+AL+ MLAPDA W +D GGKVSAAR+PV GA+RVAR GL R AA + Sbjct: 184 FLLAAAGGDVDALVEMLAPDAVWTSDGGGKVSAARRPVYGADRVARVAIGLSRAAAEFPD 243 Query: 243 LQVELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 +++E T NS PA+L Y G+L+ V+ + I K+ + + +RNPDKL ISR Sbjct: 244 VRMEFSTFNSTPALLIYTEGRLDVVLAVSIEDGKVEHIFAIRNPDKLATAEITRHISR 301 >tr|D0LAS0|D0LAS0_GORB4 Tax_Id=526226 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Gordonia bronchialis] Length = 300 Score = 267 bits (683), Expect = 1e-69 Identities = 150/296 (50%), Positives = 185/296 (62%), Gaps = 2/296 (0%) Query: 7 SDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVT 66 SDEHA RF LRPLLFTIAYEILGSATESDDVLQ++YLRWA VDL VR+ ++YLA++VT Sbjct: 5 SDEHAARFVELRPLLFTIAYEILGSATESDDVLQDAYLRWAEVDLDEVREDRAYLAKVVT 64 Query: 67 RQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERA 126 RQSLN +RA +RRRE+YVG AD++LAESVS AMLV+LETL PDERA Sbjct: 65 RQSLNVVRARSRRREDYVGPWLPEPILLDEHDAAADVLLAESVSTAMLVVLETLGPDERA 124 Query: 127 VFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXX 186 VFVLREVFGF +DEIA+ VG+ A + ++ VD R Sbjct: 125 VFVLREVFGFGHDEIAEMVGRTATSVRQIAHRARAHVAARRPRFEPVDAARTAEITASFL 184 Query: 187 XXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAA--TELQ 244 SGDV LM +LAP+ ++ADS GK SA R+PV GA VAR + + A +L+ Sbjct: 185 AAAESGDVTTLMTILAPEVQFVADSDGKASAVRRPVRGALAVARLLAAFTQVGAKVDDLR 244 Query: 245 VELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 VE NS P + Y G L+GV LE+ + N Y +RNPDKL +A I+R Sbjct: 245 VESAIFNSLPGLRVYFDGALQGVFVLEVGDGVVRNIYAIRNPDKLIGIATPRSIAR 300 >tr|C2AMU6|C2AMU6_TSUPA Tax_Id=521096 SubName: Full=RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, TIGR02957 family;[Tsukamurella paurometabola DSM 20162] Length = 291 Score = 229 bits (585), Expect = 2e-58 Identities = 135/286 (47%), Positives = 176/286 (61%), Gaps = 4/286 (1%) Query: 11 AERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTRQSL 70 AE FT RPLLF+I YEILGS +++DVLQESYLRW+ VDL+ V + ++YLA++VTRQ+L Sbjct: 5 AEVFTEYRPLLFSIGYEILGSVADTEDVLQESYLRWSDVDLAVVENPRAYLARIVTRQAL 64 Query: 71 NALRAGARRREEYVGXXXXXXXXXXXXXXXADLVL-AESVSMAMLVLLETLTPDERAVFV 129 NALR ARRRE+YVG + VL E+V+ AML++LE+LTP ERAVFV Sbjct: 65 NALRGAARRREQYVGPWLPEPLETPSGDAPTEHVLTGEAVTTAMLLVLESLTPTERAVFV 124 Query: 130 LREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXXXX 189 LREVFGF Y EIA+AVGK T + VDP Sbjct: 125 LREVFGFGYPEIAEAVGKSEATVRQTAHRARGHVQARRPR-TVVDPAVAQGAAERFLTAA 183 Query: 190 XSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAAT--ELQVEL 247 +GDV+ALM +LAPDA +L D GG VSAAR+PV GA++VAR + GL RK A E+ + Sbjct: 184 ATGDVQALMDVLAPDAVYLGDGGGVVSAARRPVHGADKVARMLIGLFRKGAAMGEMGLRF 243 Query: 248 VTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVA 293 N PA++ G ++ V +E+ G +T Y +RNP KL +V+ Sbjct: 244 AVYNGMPAMVVSFDGVVDQVTCIEVDGAIVTGVYCVRNPAKLRSVS 289 >tr|Q0SAX1|Q0SAX1_RHOSR Tax_Id=101510 SubName: Full=Sigma factor, sigma 70 type, group 4 (ECF);[Rhodococcus sp.] Length = 311 Score = 218 bits (555), Expect = 7e-55 Identities = 122/294 (41%), Positives = 174/294 (59%), Gaps = 2/294 (0%) Query: 7 SDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVT 66 SD E F R LLFT+AYE+LGSA +++D+LQE++LRWA VDL VR+ ++YL ++ T Sbjct: 20 SDPATEAFVAHRNLLFTVAYEMLGSAADAEDILQETWLRWAGVDLDTVRNQRAYLVRITT 79 Query: 67 RQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERA 126 RQ+L LR +RR+E YVG D+ LA+SVSMAML++LETL P ERA Sbjct: 80 RQALVRLRTLSRRKESYVG-PWLPEPLLTAPDVAEDVELADSVSMAMLLVLETLAPTERA 138 Query: 127 VFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXX 186 VFVLREVF +Y EIADAVGK +P + G V P + Sbjct: 139 VFVLREVFALEYGEIADAVGK-SPDAVRQIAHRARAHVASRRPRGVVSPAESRDALEAFQ 197 Query: 187 XXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVE 246 +GD+++L+ +LAPD L D GG A +P+VGA++V R + + + + VE Sbjct: 198 RALETGDLQSLLDLLAPDVVLLGDGGGVKQAVLRPIVGADKVGRLLAAGLPRIDGTVSVE 257 Query: 247 LVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 V N +PA++ L G+++ V+ + + KIT Y++RNP+KL+ V R +SR Sbjct: 258 PVQMNGSPALIVRLDGEIDDVVAVRMDDGKITGLYIVRNPEKLSRVERETAVSR 311 >tr|C9N6H8|C9N6H8_9ACTO Tax_Id=591167 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Streptomyces flavogriseus ATCC 33331] Length = 312 Score = 211 bits (536), Expect = 1e-52 Identities = 125/290 (43%), Positives = 173/290 (59%), Gaps = 5/290 (1%) Query: 12 ERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTRQSLN 71 E F R LLFT+AYE+LGSA +++DVLQE++LRWA VDL AVRD ++YL ++ TRQ+L+ Sbjct: 27 ETFVAHRNLLFTVAYEMLGSAADAEDVLQETWLRWAGVDLDAVRDRRAYLVRITTRQALS 86 Query: 72 ALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAVFVLR 131 LR RR+E YVG D+ LAESVSMAM++++ETL P+ERAVFVLR Sbjct: 87 RLRTLGRRKETYVG-TWLPEPLLTAPDVAEDVELAESVSMAMMLVMETLAPNERAVFVLR 145 Query: 132 EVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXXXXXS 191 EVFG DY+EI++AVG+ + G V P + Sbjct: 146 EVFGLDYEEISEAVGRSRDAVRQIAHRARAHVAARRPR-GTVSPDETRRALDAFRGAVET 204 Query: 192 GDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVAR-AITGLIRKAATELQVELVTC 250 GDV+ L+ +LAPD L D GG A +PVVGA++VAR + GL + +A L+ V Sbjct: 205 GDVQGLLDILAPDVVLLGDGGGIRQAVLRPVVGADKVARLLVAGLGKVSAPALRPAHV-- 262 Query: 251 NSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 N+APA++ LGG+L+ V+ + I IT Y +RNP KL+ + + + R Sbjct: 263 NAAPALVVRLGGELDTVMAVRIEDGLITGLYAVRNPQKLSHMRQETPLRR 312 >tr|C8XB44|C8XB44_NAKMY Tax_Id=479431 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Nakamurella multipartita] Length = 311 Score = 210 bits (534), Expect = 2e-52 Identities = 125/302 (41%), Positives = 173/302 (57%), Gaps = 9/302 (2%) Query: 4 PSHSDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRW--AAVDLSAVRDTKSYL 61 P+H + F R LLFTIAYEI GS +++DV+QESYLRW A + +R ++YL Sbjct: 14 PTHGG--LDDFVRHRDLLFTIAYEITGSVADAEDVVQESYLRWQEAVAGATEIRHPRAYL 71 Query: 62 AQLVTRQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLT 121 A++ TRQ+LN R ARRREEYVG D VLAESVSMAM+V+L++LT Sbjct: 72 ARIATRQALNRNRGNARRREEYVGPWLPEPLVTVPDVAE-DAVLAESVSMAMMVVLDSLT 130 Query: 122 PDERAVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRN--- 178 PDERAVFVLREVF F +DEIA A+GK +P + D +N Sbjct: 131 PDERAVFVLREVFAFGHDEIAAAIGK-SPVAVRQIAHRARSGVQSRRPDLDSSTSQNAAA 189 Query: 179 XXXXXXXXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRK 238 +G+++ L+ +LAPD + D GGKV+AAR+P+ A++V R + G+ + Sbjct: 190 QQVTARFLQAATTGNLQDLLDVLAPDVVLITDGGGKVNAARRPIATADKVGRFLLGIRDR 249 Query: 239 AATELQVELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEI 298 + Q +LVT N P V YL G L+ V+T V ++T Y++RNPDK+ R + Sbjct: 250 GVGDAQYDLVTVNGRPGVRAYLDGVLDTVLTWNAVDGRVTAIYLVRNPDKVGTADRTRSV 309 Query: 299 SR 300 +R Sbjct: 310 TR 311 >tr|C1AZY5|C1AZY5_RHOOB Tax_Id=632772 SubName: Full=RNA polymerase ECF-type sigma factor;[Rhodococcus opacus] Length = 311 Score = 210 bits (534), Expect = 2e-52 Identities = 119/296 (40%), Positives = 169/296 (57%), Gaps = 2/296 (0%) Query: 5 SHSDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQL 64 + SD + F R LLFT+AYE+LGSA +++D+LQE++LRWA VDL VR+ ++YL ++ Sbjct: 18 ARSDPATDAFVTHRNLLFTVAYEMLGSAADAEDILQETWLRWAGVDLGTVRNQRAYLVRI 77 Query: 65 VTRQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDE 124 TRQ+L LR RRRE YVG D+ LA+SVSMAM+++LETL P E Sbjct: 78 TTRQALVRLRTLGRRRESYVG-PWLPEPLLTAPDVAEDVELADSVSMAMMLVLETLAPTE 136 Query: 125 RAVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXX 184 RAVFVLREVF +Y EIA AV K + G V P + Sbjct: 137 RAVFVLREVFDLEYGEIAAAVDKSTDAVRQIAHRARAHVAARRPR-GVVTPAESRDALDA 195 Query: 185 XXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQ 244 +GD+++L+ LAPD L D GG A +P+VGA++V R + + + E+ Sbjct: 196 FKRALETGDLQSLLDQLAPDVVLLGDGGGVKQAVPRPIVGADKVGRLLAAGLPRIGGEVS 255 Query: 245 VELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 VE V N +PA++ L G+++ V+ + I IT Y++RNP+KL+ V R +SR Sbjct: 256 VESVQMNGSPALIVRLDGEIDDVVAVRIDDGMITGLYIVRNPEKLSRVERETSVSR 311 >tr|C4DK09|C4DK09_9ACTO Tax_Id=446470 SubName: Full=RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, TIGR02957 family;[Stackebrandtia nassauensis DSM 44728] Length = 294 Score = 210 bits (534), Expect = 2e-52 Identities = 119/285 (41%), Positives = 168/285 (58%), Gaps = 2/285 (0%) Query: 8 DEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTR 67 D + F R LLFT+AYE+LGSA +++DVLQE++LRWA VDL VRD ++YL ++ TR Sbjct: 11 DAATDAFVAHRNLLFTVAYELLGSAVDAEDVLQETWLRWADVDLDTVRDHRAYLVRIATR 70 Query: 68 QSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAV 127 Q+LN LR +RR+E YVG D+ LA+S+S AML++LETLTP ERAV Sbjct: 71 QALNRLRTLSRRKESYVG-PWLPEPLLTTPDVAEDVELADSLSTAMLLVLETLTPTERAV 129 Query: 128 FVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXX 187 FVLR+VF DYDEIA+AV K P + G+V P ++ Sbjct: 130 FVLRDVFALDYDEIAEAVDK-TPAAVRKVAHRARSHVAARRPRGEVSPAQSRAALEAFRS 188 Query: 188 XXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVEL 247 +GD++ L+ +LAPD L+D GG V+A P+VGA++V R + +E Sbjct: 189 AVATGDLQGLVDILAPDMVMLSDGGGIVTALPNPIVGADKVLRLFAASLDTFLRGATLEP 248 Query: 248 VTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAV 292 V N PA+L + G+L+GV+TL + ++ Y +RNP+KL+ V Sbjct: 249 VRVNGFPALLMRVCGKLDGVLTLRLDDGLVSGLYYVRNPEKLSRV 293 >tr|B5GN61|B5GN61_STRCL Tax_Id=443255 SubName: Full=Sigma factor;[Streptomyces clavuligerus ATCC 27064] Length = 328 Score = 210 bits (534), Expect = 2e-52 Identities = 122/293 (41%), Positives = 168/293 (57%), Gaps = 2/293 (0%) Query: 8 DEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTR 67 D E F R LLFT+AYE+LGSA +++DVLQE++LRW VDL VRD ++YL ++ TR Sbjct: 38 DAATETFLAHRNLLFTVAYELLGSAADAEDVLQETWLRWTGVDLGTVRDRRAYLVRVTTR 97 Query: 68 QSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAV 127 Q+L+ LRA +RR+E YVG D+ LA+SVSMAML++LETLTP ERAV Sbjct: 98 QALSRLRALSRRKESYVG-SWLPAPLLTTPDVAEDIELADSVSMAMLLVLETLTPTERAV 156 Query: 128 FVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXX 187 FVLREVFG YD+IA+AV K +P + G V P Sbjct: 157 FVLREVFGVGYDDIAEAVDK-SPAAVRQIAHRARAHVAARRPRGVVSPAETRDAIAAFQR 215 Query: 188 XXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVEL 247 +GD++ L+ +LAPD +L D GG A PVVG ERVAR +T + + A + Sbjct: 216 AVDTGDLQGLLDILAPDVVFLGDGGGIKPAVPHPVVGVERVARLLTAGLGRIAAVGSLGP 275 Query: 248 VTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 V N PA++ G ++ V+ +++ IT Y +RNP+KL+ + +SR Sbjct: 276 VQINGRPALVVRFDGAIDTVVAVQVDNGLITGLYAVRNPEKLSHMRSETALSR 328 >tr|Q9RDI5|Q9RDI5_STRCO Tax_Id=1902 SubName: Full=Putative sigma factor;[Streptomyces coelicolor] Length = 315 Score = 208 bits (529), Expect = 7e-52 Identities = 118/293 (40%), Positives = 170/293 (58%), Gaps = 2/293 (0%) Query: 8 DEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTR 67 D E F R LLFT+AYE+LGSA +++DVLQE++L+WA VDL VRD ++YL ++ TR Sbjct: 25 DGATEAFVTHRNLLFTVAYEMLGSAADAEDVLQETWLKWAGVDLDTVRDRRAYLVRITTR 84 Query: 68 QSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAV 127 Q+LN LR RR+E YVG D+ LA+SVSMAM++++ETL P ERAV Sbjct: 85 QALNRLRTLGRRKESYVG-SWLPEPLLTTPDVAEDVELADSVSMAMMLVMETLAPTERAV 143 Query: 128 FVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXX 187 FVLREVF YDEIA+AV K +P + G V + Sbjct: 144 FVLREVFDLGYDEIAEAVEK-SPAAVRQIAHRARAHVAARRPRGAVSATESREALAAFQR 202 Query: 188 XXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVEL 247 +GD++ L+ +L+PD L D GG A +PVVGA++VAR + G + K E++++ Sbjct: 203 AVETGDLQGLLDILSPDVVLLGDGGGIKQAVLRPVVGADKVARLMLGGLVKLDMEMRMDP 262 Query: 248 VTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 N PA++ L G+L+ V+ + + +IT Y +RNP+KL+ + +SR Sbjct: 263 AQVNGHPALVIRLDGELDTVVAVRLDEGRITGLYAVRNPEKLSYMREEASLSR 315 >tr|Q5YXM9|Q5YXM9_NOCFA Tax_Id=37329 SubName: Full=Putative sigma factor;[Nocardia farcinica] Length = 298 Score = 208 bits (529), Expect = 7e-52 Identities = 121/286 (42%), Positives = 161/286 (56%), Gaps = 2/286 (0%) Query: 5 SHSDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQL 64 S +D + F R LLFT+AYE+LGSA +++DVLQE++LRW VD VRD ++YL ++ Sbjct: 2 STADAATDAFVAHRNLLFTVAYEMLGSAADAEDVLQETWLRWRTVDRDQVRDDRAYLVRI 61 Query: 65 VTRQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDE 124 TRQSLN LR RR+E YVG D LAES+SMAM+++LETL P E Sbjct: 62 TTRQSLNRLRTLQRRKESYVG-PWLPEPLLTTPDIAEDAELAESLSMAMMLVLETLAPTE 120 Query: 125 RAVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXX 184 RAVFVLREVF F YDEIA AVGK PT + V R Sbjct: 121 RAVFVLREVFDFGYDEIAAAVGK-TPTAVRQIAHRARKHVEARRPREAVSASRTREVLEQ 179 Query: 185 XXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQ 244 + D+ L+ +LAP+ + D GG A +P++GA +VA G +RK L Sbjct: 180 FQRAIETRDLSGLLELLAPEVVLVGDGGGVKQAVLRPILGARKVATLFLGGLRKVPGALT 239 Query: 245 VELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLT 290 + L N +PA++ YL G+L+GV+ ++ G IT Y +RNP KLT Sbjct: 240 IGLTHVNGSPALVVYLDGELDGVMAVDHDGAHITGMYYVRNPHKLT 285 >tr|C4DRB7|C4DRB7_9ACTO Tax_Id=446470 SubName: Full=RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, TIGR02957 family;[Stackebrandtia nassauensis DSM 44728] Length = 301 Score = 206 bits (525), Expect = 2e-51 Identities = 121/293 (41%), Positives = 166/293 (56%), Gaps = 2/293 (0%) Query: 8 DEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTR 67 D E F R LLFT+AYE+LGSA +++DVLQE++LRWA VDL+ VRD ++YL ++ TR Sbjct: 11 DAATEAFVRHRNLLFTVAYELLGSAADAEDVLQETWLRWAGVDLAPVRDHRAYLVRIATR 70 Query: 68 QSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAV 127 Q+L LR +RR+E YVG D+ LA+SVSMAML++LETLTP ERAV Sbjct: 71 QALTRLRTLSRRKELYVG-PWLPEPLVTAPDVAEDVELADSVSMAMLLVLETLTPTERAV 129 Query: 128 FVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXX 187 FVLREVF DYDEIA+AV K P + G V + Sbjct: 130 FVLREVFDLDYDEIAEAVDK-TPAAVRQIARRARSHVAARRPRGAVTSAQTKAAADAFQR 188 Query: 188 XXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVEL 247 +GD+++L+ +LAPD L+D GG A +P+VGA++VA + R +E Sbjct: 189 AIETGDLQSLVDILAPDVVALSDGGGVKRATPRPIVGADKVAHGLATQWRHLNATPSIEP 248 Query: 248 VTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 V N P ++ L G +E VI + + IT Y +RNP+KL+ V ++R Sbjct: 249 VHVNGHPGLIMRLDGDIENVIAMRVEDGLITGLYFVRNPEKLSRVEHETALTR 301 >tr|A4FJ19|A4FJ19_SACEN Tax_Id=405948 SubName: Full=Sigma factor, sigma 70 type, group 4 (ECF);[Saccharopolyspora erythraea] Length = 312 Score = 206 bits (524), Expect = 3e-51 Identities = 122/289 (42%), Positives = 164/289 (56%), Gaps = 2/289 (0%) Query: 12 ERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTRQSLN 71 E F R LLFT+AYE+LGSA +++DVLQE++LRWA VDL AVRD ++YL ++ TRQ+L Sbjct: 26 EAFLAHRNLLFTVAYEMLGSAADAEDVLQETWLRWAGVDLGAVRDRRAYLVRITTRQALA 85 Query: 72 ALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAVFVLR 131 LRA RR+E YVG D+ LA+SVSMAML++LETL P ERAVFVLR Sbjct: 86 RLRALGRRKESYVG-PWLPEPLLTAPDVAEDVELADSVSMAMLLVLETLNPTERAVFVLR 144 Query: 132 EVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXXXXXS 191 EVF YDEIA+AVGK P + G V + Sbjct: 145 EVFDVGYDEIAEAVGK-TPAAVRQIAHRARAHVASRRPRGVVSASETKDALDAFRRAAET 203 Query: 192 GDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVELVTCN 251 G+++ L+ +LAPD +L D GG A +PVVGA +VAR + + + A + N Sbjct: 204 GEMQGLLDILAPDVVFLGDGGGVKQAVLRPVVGAGKVARLLAAGLGRLAGTASLLPAQVN 263 Query: 252 SAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 PA++ GG+L+ V+ + I IT Y +RNPDKL+ + R + R Sbjct: 264 GYPALVLRRGGELDTVVAVRIDDGLITGLYAVRNPDKLSHMERETTLRR 312 >tr|A3TNU6|A3TNU6_9MICO Tax_Id=313589 SubName: Full=Putative sigma factor;[Janibacter sp. HTCC2649] Length = 297 Score = 206 bits (523), Expect = 4e-51 Identities = 114/287 (39%), Positives = 173/287 (60%), Gaps = 3/287 (1%) Query: 14 FTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTRQSLNAL 73 FT R LLFT+AYE+LGSA +++DV+Q+++L+W AVD VRD +++L ++V+R +L+ L Sbjct: 14 FTTHRSLLFTVAYEMLGSAADAEDVVQDAWLKWDAVDQREVRDPRAFLVRVVSRTALDRL 73 Query: 74 RAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAVFVLREV 133 R +RRRE+YVG D+ LA+SVS+AM+++LETLTP ERAVFVLREV Sbjct: 74 RTVSRRREDYVG-PWLPEPLVTARDVAEDVELADSVSIAMMLVLETLTPTERAVFVLREV 132 Query: 134 FGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXXXXXSGD 193 FG DYDE+A+AV K +P + GDV+P + +GD Sbjct: 133 FGLDYDELAEAVDK-SPASVRQIAHRARSHVAARRPRGDVEPGQARGVFEAFQRAVTTGD 191 Query: 194 VEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVELVTCNSA 253 ++ L+ +LAPD L D GG A PV+GA++V+R + G + + V N Sbjct: 192 LQGLVDVLAPDVVMLGDGGGIKQALAHPVLGADKVSRLLLGGFSRFGA-ITFSPVDINGR 250 Query: 254 PAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 PA++ +L G+++ ++T+E+ IT Y +RNP+KL + ++SR Sbjct: 251 PALIVHLDGEVDSILTVEVEDGLITGVYAVRNPEKLGRIGTETDVSR 297 >tr|B5H7F5|B5H7F5_STRPR Tax_Id=457429 SubName: Full=Sigma factor;[Streptomyces pristinaespiralis ATCC 25486] Length = 298 Score = 204 bits (520), Expect = 8e-51 Identities = 117/286 (40%), Positives = 163/286 (56%), Gaps = 2/286 (0%) Query: 8 DEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTR 67 D + F R LLFT+AYE+LGSA +++DVLQE++LRW VDL VRD ++YL ++ TR Sbjct: 7 DPATDTFVAHRNLLFTVAYEMLGSAADAEDVLQETWLRWVKVDLEQVRDQRAYLVRITTR 66 Query: 68 QSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAV 127 Q+LN LR RR+E YVG D+ LAESVSMAM+++LETL+P ERAV Sbjct: 67 QALNRLRTMKRRKEAYVG-PWLPEPLLTAPDVAEDVELAESVSMAMMLVLETLSPTERAV 125 Query: 128 FVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXX 187 FVLRE F YDEIA AV K P + V Sbjct: 126 FVLREAFDVGYDEIAAAVDK-TPAAVRQIAHRARRHVDARRPRQAVSASETRAALESFRR 184 Query: 188 XXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVEL 247 +GD + L+ +LAPD ++D GG AA +P++GAE+VAR + G + K + V Sbjct: 185 ALETGDPQDLLDVLAPDIVLMSDGGGIKQAALRPIIGAEKVARFMMGGLGKNKLPISVAP 244 Query: 248 VTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVA 293 N +PA+L +L G+++GV+ + + ++T Y +RNP+KL VA Sbjct: 245 TVVNGSPALLVHLDGEIDGVMAISVEDARVTGLYYVRNPEKLNHVA 290 >tr|C5C3K0|C5C3K0_BEUC1 Tax_Id=471853 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Beutenbergia cavernae] Length = 299 Score = 203 bits (517), Expect = 2e-50 Identities = 119/293 (40%), Positives = 168/293 (57%), Gaps = 5/293 (1%) Query: 8 DEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTR 67 D E F R LLFT+AYE+LGSA +++DVLQE++L+W VDL+ VRD ++YL ++ TR Sbjct: 12 DPATEAFVAHRNLLFTVAYEMLGSAADAEDVLQETWLKWVGVDLALVRDPRAYLVRITTR 71 Query: 68 QSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAV 127 Q+L LR+ +RR+E YVG D+ LAESVSMAML++LETL P ERAV Sbjct: 72 QALTRLRSLSRRKESYVG-TWLPEPLLTAPDAAQDVELAESVSMAMLLVLETLKPTERAV 130 Query: 128 FVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXX 187 FVLREVF YDE+A+AVGK P + V P Sbjct: 131 FVLREVFDLSYDEVAEAVGK-TPAAVRQIAHRARSHVAARRPREHVSPAETRAVLAAFRS 189 Query: 188 XXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVEL 247 +GD+ L+ ++APD +LAD GG V AA +PVVG++ V R + G+ + + + + Sbjct: 190 ALETGDLRRLLDVMAPDVVFLADGGGVVRAALEPVVGSDDVGRFLGGVAERMGS---LRI 246 Query: 248 VTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 V N PA+LF G +E V+ + + I+ Y +RNP KL+ + + +SR Sbjct: 247 VEVNGHPALLFERDGAVETVMAVRVERGLISGLYAVRNPAKLSHLGQETTLSR 299 >tr|C1WJ63|C1WJ63_9ACTO Tax_Id=479435 SubName: Full=RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, TIGR02957 family;[Kribbella flavida DSM 17836] Length = 314 Score = 203 bits (517), Expect = 2e-50 Identities = 121/292 (41%), Positives = 165/292 (56%), Gaps = 4/292 (1%) Query: 7 SDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVT 66 +D E F R LLFT+AYE+LGSA +++DVLQE++LRW VDL V+D ++YL ++ + Sbjct: 22 TDAATEAFVTHRNLLFTVAYEMLGSAADAEDVLQEAWLRWVKVDLDQVKDHRAYLVRITS 81 Query: 67 RQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERA 126 RQ+LN LR+ RRRE YVG AD+ L+ESVSMA++++LETLTP ERA Sbjct: 82 RQALNRLRSVKRRRESYVG-SWLPEPLLTTPDVAADVELSESVSMALMLVLETLTPTERA 140 Query: 127 VFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXX 186 VFVLRE FG YD+IA AV K P + V ++ Sbjct: 141 VFVLREAFGIGYDDIAAAVDK-TPAAVHQIAHRARRHVEARRPRRSVTARQAQVALDAFQ 199 Query: 187 XXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVE 246 + D++ L+ +LAPD ++D GG +PVVGA +VA I G + K L VE Sbjct: 200 RALETRDLQGLLDVLAPDVVAISDGGGIKQTTPRPVVGARKVATFIVGGLTKHDVTLTVE 259 Query: 247 LVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEI 298 N +PA+ + G L+GVI + + +IT Y +RNP KLT RA EI Sbjct: 260 PTAVNGSPALALHYDGDLDGVIAISVEDSRITGLYYVRNPQKLT--HRATEI 309 >tr|C1WNW3|C1WNW3_9ACTO Tax_Id=479435 SubName: Full=RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, TIGR02957 family;[Kribbella flavida DSM 17836] Length = 297 Score = 202 bits (515), Expect = 3e-50 Identities = 117/281 (41%), Positives = 158/281 (56%), Gaps = 2/281 (0%) Query: 12 ERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTRQSLN 71 + F R LLFT+AYE+LGSA +++DVLQE++LRW VDL VRD ++YL ++ TRQ+LN Sbjct: 10 DTFVAHRNLLFTVAYEMLGSAADAEDVLQETWLRWIDVDLDQVRDERAYLVRITTRQALN 69 Query: 72 ALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAVFVLR 131 LR RR+E YVG D+ LAES+SMA+L++LETLTP ERAVFVLR Sbjct: 70 RLRTLKRRKEAYVG-PWLPEPLLTSPDVAEDVELAESMSMALLLVLETLTPTERAVFVLR 128 Query: 132 EVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXXXXXS 191 E F Y EIA AVGK P + V R + Sbjct: 129 EAFDVSYAEIAAAVGK-TPAAVRQIAHRARRHVEARRPRAAVPASRTRAALKSMQRALET 187 Query: 192 GDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVELVTCN 251 GD++ L+ +LAPD + D GG AA +PVVGA+RV R + G + K + L N Sbjct: 188 GDLQGLLDVLAPDVVLIGDGGGVKQAALRPVVGADRVVRLLAGGLGKDPGVITTGLTEVN 247 Query: 252 SAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAV 292 PA+L L G+++G++ L + +T Y +RNP KLT + Sbjct: 248 GNPALLLRLDGEIDGILALRVEDTGVTGLYYVRNPAKLTRI 288 >tr|C1WJD6|C1WJD6_9ACTO Tax_Id=479435 SubName: Full=RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, TIGR02957 family;[Kribbella flavida DSM 17836] Length = 292 Score = 191 bits (485), Expect = 9e-47 Identities = 114/283 (40%), Positives = 160/283 (56%), Gaps = 3/283 (1%) Query: 18 RPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTRQSLNALRAGA 77 R LLFT+AYE+LGSA +++DV+QE++LRWAA D +AVR+ ++YL ++ TRQ+LN LR + Sbjct: 13 RGLLFTVAYEMLGSAADAEDVVQETWLRWAATDQAAVREPRAYLVRIATRQALNRLRTVS 72 Query: 78 RRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAVFVLREVFGFD 137 RRRE+YVG D+ LA+SVS+AM+ +LETL P ERAVFVLREVF Sbjct: 73 RRREDYVG-EWLPEPLLTSPDVAEDVELADSVSIAMMTVLETLGPIERAVFVLREVFDVP 131 Query: 138 YDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXXXXXSGDVEAL 197 YDEIA AVGK +P + V P +GDV+ L Sbjct: 132 YDEIAAAVGK-SPAAVRQIAHRARGHVAARRPRTRVAPAEQQVVVDRFLAAVRTGDVQGL 190 Query: 198 MAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVELVTCNSAPAVL 257 + +L+PD + D GG V A P+ G RV+ + G I A +LQ+ V N APA Sbjct: 191 LDVLSPDVVLVTDGGGVVQALMAPLEGVRRVSTLLAG-IATHAPDLQLTSVWLNGAPAAR 249 Query: 258 FYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 GG + ++L + +IT Y +RNP K+ + + ++R Sbjct: 250 IDPGGARDTALSLTVENGRITRIYAVRNPHKMAYLDTENPLTR 292 >tr|C7Q3S5|C7Q3S5_CATAD Tax_Id=479433 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Catenulispora acidiphila] Length = 298 Score = 189 bits (480), Expect = 3e-46 Identities = 110/289 (38%), Positives = 157/289 (54%), Gaps = 2/289 (0%) Query: 12 ERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTRQSLN 71 E F R LLFT+AYE+LGSA +++DVLQE++LRW VDL VRD ++YL ++ TRQ+L Sbjct: 12 ETFVAHRNLLFTVAYEMLGSAADAEDVLQETWLRWTTVDLDTVRDRRAYLVRITTRQALT 71 Query: 72 ALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAVFVLR 131 LR RR+E YVG D+ LA+SVSMAML+++ETLTP ERAVFVLR Sbjct: 72 QLRKLGRRKESYVG-PWLPEPLLTTPDVAEDVELADSVSMAMLLVMETLTPAERAVFVLR 130 Query: 132 EVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXXXXXS 191 +VF +Y+EIA+AV K P + G + Sbjct: 131 DVFSLEYEEIAEAVDK-TPAAVRQIAHRARNHVAARRPRGVTSTSDARCATEAFQKAVNT 189 Query: 192 GDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVELVTCN 251 GD+++L +LAPD ++ D GG V A +P+ G E V+R + + + +E N Sbjct: 190 GDLQSLFDLLAPDVVFIGDGGGVVQATPQPLYGIEVVSRFMADGLSHLGAFVTMETAYVN 249 Query: 252 SAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 V+ GG ++ ++ + IT YV+RNP+KL+ V +SR Sbjct: 250 GGLGVIIRAGGAVDTIVAMHTENGLITGIYVVRNPEKLSRVEEETAMSR 298 >tr|C5BW92|C5BW92_BEUC1 Tax_Id=471853 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Beutenbergia cavernae] Length = 292 Score = 189 bits (479), Expect = 4e-46 Identities = 118/289 (40%), Positives = 164/289 (56%), Gaps = 4/289 (1%) Query: 14 FTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTRQSLNAL 73 F R LLFT+AYE+LGSA +++DV+QE++LRWA V+ VR+ +SYL ++VTRQ+LN + Sbjct: 6 FVTHRSLLFTVAYEMLGSAADAEDVVQETWLRWADVEHGEVRNPRSYLVRVVTRQALNRM 65 Query: 74 RAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAVFVLREV 133 R ARRRE+YVG D+ LAESVS+AML +LETL P ERAVFVLREV Sbjct: 66 RTLARRREDYVGEWLPEPLLTSPDVAD-DVELAESVSIAMLTVLETLGPTERAVFVLREV 124 Query: 134 FGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXXXXXSGD 193 F YDEI +AVG+ P + +VD +GD Sbjct: 125 FDVPYDEIGEAVGR-TPATTRQIARRARGHVAARRPRIEVDRAEQERVLARFLTAARTGD 183 Query: 194 VEALMAMLAPDATWLADSGGKV-SAARKPVVGAERVARA-ITGLIRKAATELQVELVTCN 251 ++ LM +LAPD +AD GG + AAR+PV GA R+A A + GL + L V + N Sbjct: 184 LQGLMDVLAPDVVAVADGGGLIRGAARRPVAGARRLATALLRGLGSVSPERLTVTRLWLN 243 Query: 252 SAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 AP V F + G++ +++ I +IT + + NP KL + ++R Sbjct: 244 GAPGVRFDVEGEVTVALSVTIADGRITQIFGVSNPHKLARLDVEEALAR 292 >tr|A1SDT9|A1SDT9_NOCSJ Tax_Id=196162 SubName: Full=Sigma-70 region 2 domain protein;[Nocardioides sp.] Length = 292 Score = 188 bits (478), Expect = 6e-46 Identities = 110/283 (38%), Positives = 156/283 (55%), Gaps = 4/283 (1%) Query: 18 RPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTRQSLNALRAGA 77 R LLFT+AYE+LGSA +++DVLQE++LRW VD VR+ ++YL ++ TR +LN +R A Sbjct: 14 RNLLFTVAYEMLGSAADAEDVLQETWLRWVEVDREEVREARAYLVRIATRLALNRMRTNA 73 Query: 78 RRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAVFVLREVFGFD 137 RRRE YVG D+ LA+SVS+AML LLETL P ERAVFVLREVF F Sbjct: 74 RRRESYVG-PWLPEPLLTTPDVAEDVELADSVSLAMLTLLETLGPTERAVFVLREVFDFG 132 Query: 138 YDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXXXXXSGDVEAL 197 YDEIA AV K P + + +GD+++L Sbjct: 133 YDEIAAAVDK-TPAAVRQIAHRARGHVAERRPRAEATRSEREHVMATFLAAVATGDIQSL 191 Query: 198 MAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVELVTCNSAPAVL 257 M +LAPD + D GG AA +P++G ++V R + + + ++V N APA+ Sbjct: 192 MDVLAPDVVLVTDGGGVKKAALRPILGRDKVVRFLGAV--SEGLDAVADVVVVNGAPALR 249 Query: 258 FYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 L G+L+ V ++ + +T YV+RNP KL + ++R Sbjct: 250 IVLDGELDTVASMVVEDGLVTGLYVVRNPAKLARLDAVVTLTR 292 >tr|A4XBA8|A4XBA8_SALTO Tax_Id=369723 SubName: Full=Sigma-70, region 4 type 2;[Salinispora tropica] Length = 322 Score = 182 bits (461), Expect = 5e-44 Identities = 109/293 (37%), Positives = 156/293 (53%), Gaps = 2/293 (0%) Query: 8 DEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTR 67 D+H F R L+ +AY LGSATE++DV+QE++LRW+ V+ + + D +++L ++ R Sbjct: 21 DQHEPSFMKHRGKLYAVAYRTLGSATEAEDVVQEAWLRWSRVEPATIVDAEAFLVRVTIR 80 Query: 68 QSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAV 127 +++ LR+ RRE Y+G D+VLA+SVS A+L++LETL+P ERAV Sbjct: 81 LAIDQLRSARVRREAYLGPWLPEPILTRADIAD-DVVLADSVSTALLLVLETLSPMERAV 139 Query: 128 FVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXX 187 FVL E FG+ Y EIA +G+ P +Y D DP Sbjct: 140 FVLHEAFGYPYAEIAHLLGRSEPAVRQLGHRARKAVATRRHRY-DSDPMTRQQVTTRFLA 198 Query: 188 XXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVEL 247 GD+ ALM +LAP T ++D GG+ A RKP+ G++ VARAI L R+ + Sbjct: 199 ACSDGDLTALMEILAPSVTMVSDGGGRTGAPRKPIHGSDLVARAIVVLSRQQPVGSTAVV 258 Query: 248 VTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAHEISR 300 V N P VL G +TL +V + + V+ NP KLTAVA SR Sbjct: 259 VQLNGGPGVLVSCAGTAVLAMTLHLVEGLVQSIQVVSNPQKLTAVALGPTTSR 311 >tr|D1C9S1|D1C9S1_9CHLR Tax_Id=479434 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Sphaerobacter thermophilus DSM 20745] Length = 307 Score = 181 bits (460), Expect = 7e-44 Identities = 109/296 (36%), Positives = 153/296 (51%), Gaps = 5/296 (1%) Query: 3 PPSHSDEHAER---FTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKS 59 P D AER FT RPLLF+IAY +LGS +++D++QE++LRW V K+ Sbjct: 7 PERREDTAAERLDAFTAHRPLLFSIAYRMLGSVMDAEDMIQEAFLRWLRAPAGEVASPKA 66 Query: 60 YLAQLVTRQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLA-ESVSMAMLVLLE 118 YL +TR ++ LR+ RRE+YVG A+ ES+S+A LV+LE Sbjct: 67 YLTTTITRLCIDHLRSARVRREQYVGPWLPEPLLTASYPDIAETAAQRESISLAFLVMLE 126 Query: 119 TLTPDERAVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRN 178 L P ERAVF+LREVF +DY EIA V K PT ++ +V P+R Sbjct: 127 RLEPVERAVFLLREVFDYDYAEIAPIVDK-TPTNCRQIVRRARERIADERRRVEVPPERQ 185 Query: 179 XXXXXXXXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRK 238 +GD+ L+ +LA D T D G AAR+P+VGA+RVAR G+ + Sbjct: 186 EALIDAFLGACANGDLPGLLTLLADDITMWTDGGPHARAARRPIVGADRVARFSIGVTPR 245 Query: 239 AATELQVELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVAR 294 V N P V+ Y GG+ +++VGD+I +++ NPDKL + R Sbjct: 246 IPPGTTAHHVEINGQPGVVLYAGGEPHTAFVVDLVGDRIHRIWMVLNPDKLRHLPR 301 >tr|B5HZH4|B5HZH4_9ACTO Tax_Id=463191 SubName: Full=ECF-sigma factor;[Streptomyces sviceus ATCC 29083] Length = 294 Score = 178 bits (452), Expect = 6e-43 Identities = 102/291 (35%), Positives = 159/291 (54%), Gaps = 5/291 (1%) Query: 7 SDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVT 66 +D + F RP+L +AY +LG +++DV+QE++LRW+A D S VR+ ++YL ++ T Sbjct: 3 TDTETDVFEEHRPVLLGVAYRMLGRVADAEDVVQEAWLRWSAADRSEVREPRAYLVRVTT 62 Query: 67 RQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADL----VLAESVSMAMLVLLETLTP 122 R +++ LR R E YVG D VLA+SVS+A+LV++E+L+P Sbjct: 63 RLAIDRLRQVKARGETYVGPWLPEPYVTDFGDTVPDTAEQAVLADSVSLAVLVVMESLSP 122 Query: 123 DERAVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXX 182 ERAVFVLRE FG+ Y +IA + + P ++ DVDP R Sbjct: 123 LERAVFVLREAFGYPYADIAAMLDRGEPAVRQLAGRARRHVEERRPRF-DVDPVRRRDLT 181 Query: 183 XXXXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATE 242 GD++ L+++LAPD + DSGGK A + + A+ V R + G+ K + Sbjct: 182 ERFLAAAGGGDLKELLSLLAPDVRLVGDSGGKSKAPLRVLESADHVGRFLVGVAGKGVPD 241 Query: 243 LQVELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVA 293 + + N PAVL GG+ + V L+++ +I + YV+RNPDKL ++A Sbjct: 242 ISWRFLEVNGGPAVLILSGGKPDSVFQLDVLDGRIQSVYVIRNPDKLHSLA 292 >tr|B1W5D6|B1W5D6_STRGG Tax_Id=455632 SubName: Full=Putative RNA polymerase ECF-subfamily sigma factor;[Streptomyces griseus subsp. griseus] Length = 294 Score = 176 bits (445), Expect = 4e-42 Identities = 100/290 (34%), Positives = 158/290 (54%), Gaps = 5/290 (1%) Query: 8 DEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTR 67 D E F RP+L +AY +LG +++DV+QE++LRW+A VR+ +++L ++ TR Sbjct: 4 DTATEAFEEHRPVLTGVAYRMLGRVADAEDVVQEAWLRWSAASREDVREPRAFLVRITTR 63 Query: 68 QSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADL----VLAESVSMAMLVLLETLTPD 123 +++ LR RRE Y G D VLA+SVS+A+LV+LE+L+P Sbjct: 64 LAIDRLRHLRSRRESYPGTWLPEPVVTDFGPAVPDTAERAVLADSVSLAVLVVLESLSPL 123 Query: 124 ERAVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXX 183 ERAVFVLRE FGF Y EIA A+ + +Y DVDP Sbjct: 124 ERAVFVLREAFGFPYAEIATALDRSEEAVRQLAGRARRHVEGRKPRY-DVDPAERRDLTE 182 Query: 184 XXXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATEL 243 G +E L+A+LAPD ++DSGGK A R+ + A++V R + + + + Sbjct: 183 RFLAAASGGGIEQLLALLAPDVRLVSDSGGKAKAPRRIIESADKVGRFLFAVAGELGPDG 242 Query: 244 QVELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVA 293 ++ +V N PA ++++GG+++ V +E+ I Y++RNPDKL+ ++ Sbjct: 243 EIRVVELNGGPAAVYFIGGRVDTVFQIEVSQGVIQCAYIIRNPDKLSGLS 292 >tr|Q826V7|Q826V7_STRAW Tax_Id=33903 (sig55)SubName: Full=Putative RNA polymerase ECF-subfamily sigma factor;[Streptomyces avermitilis] Length = 294 Score = 174 bits (442), Expect = 9e-42 Identities = 100/291 (34%), Positives = 155/291 (53%), Gaps = 5/291 (1%) Query: 7 SDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVT 66 +D E F RP+L +AY +LG +++DV+QE++LRW+ D S VR+ + YL ++ T Sbjct: 3 TDAATEVFVEHRPVLMGVAYRMLGRVADAEDVVQEAWLRWSGADRSDVREPRRYLVRITT 62 Query: 67 RQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADL----VLAESVSMAMLVLLETLTP 122 R +++ LR R E YVG D VLA+SVS+A+LV+LE+L+P Sbjct: 63 RLAIDRLRQLRSRNEAYVGPWLPEPYLTDFGDTVPDAAERAVLADSVSLAVLVVLESLSP 122 Query: 123 DERAVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXX 182 ERAVFVLRE FGF + +IA + + +Y +VDP Sbjct: 123 LERAVFVLREAFGFPFADIAVTLERSEAAVRQLAGRARKHVDEGRPRY-EVDPAERRDLT 181 Query: 183 XXXXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATE 242 GD+E LM+MLAPD + DSGG+ A R+ + A++V R + G+ RK + Sbjct: 182 ERFLAAAAEGDLEGLMSMLAPDVRLVGDSGGRARAPRRVLESADKVGRFLVGVTRKGVAD 241 Query: 243 LQVELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVA 293 + + N PA+L G+ + V L++ +I Y++RNP+KL +++ Sbjct: 242 VSFRSLEVNGGPALLVLSAGKPDSVFQLDVADGRIQCVYIIRNPEKLVSLS 292 >tr|Q1ATI5|Q1ATI5_RUBXD Tax_Id=266117 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Rubrobacter xylanophilus] Length = 298 Score = 173 bits (439), Expect = 2e-41 Identities = 105/282 (37%), Positives = 152/282 (53%), Gaps = 6/282 (2%) Query: 12 ERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTRQSLN 71 E F RPLLF+IAY +LGS +++DV+QE+++RW VR ++YL+ +VTR ++ Sbjct: 5 EVFEEHRPLLFSIAYRMLGSVMDAEDVVQEAFVRWRGA--GEVRSPRAYLSSVVTRLCID 62 Query: 72 ALRAGARRREEYVGXXXXXXXXXXXXXXXADLVLAESVSMAMLVLLETLTPDERAVFVLR 131 LR+ RREEY G A VL E++SMA LVLLE+L+P ERAVF+LR Sbjct: 63 QLRSARARREEYAGPWLPEPLAAEPAADPA--VLDETLSMAFLVLLESLSPVERAVFLLR 120 Query: 132 EVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXXXXXS 191 EVF + Y EIA+ VGK ++ DV P S Sbjct: 121 EVFDYGYAEIAEIVGKSEANCRQIARRARQSVAARRPRF-DVSPGEGERLVRRFVEASMS 179 Query: 192 GDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVELVTCN 251 GD+E L+ +++ D T D GG+V AAR P+ GA+RVAR + G+I +A L++ N Sbjct: 180 GDMEGLLQVISEDITLWTDGGGRVRAARNPIHGADRVARFLLGVIPEAPEGLEIRYARVN 239 Query: 252 SAPAVL-FYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAV 292 P ++ +Y G +G +I G +I + NP+KL + Sbjct: 240 GQPGIVSYYADGTAQGAAAFDISGGRIRAVRYVINPEKLRGI 281 >tr|Q9K3H7|Q9K3H7_STRCO Tax_Id=1902 SubName: Full=Putative ECF-sigma factor;[Streptomyces coelicolor] Length = 295 Score = 173 bits (438), Expect = 3e-41 Identities = 99/291 (34%), Positives = 157/291 (53%), Gaps = 5/291 (1%) Query: 7 SDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVT 66 +D + F RP+L +AY +LG +++DV+QE++LRW+ D +AVR+ + YL ++ T Sbjct: 3 TDTATDVFEEHRPVLLGVAYRMLGRLADAEDVVQEAWLRWSGADRAAVREPRGYLVRVTT 62 Query: 67 RQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADL----VLAESVSMAMLVLLETLTP 122 R +++ LR R E YVG D VLA+SVS+A+LV+LE+L+P Sbjct: 63 RLAIDRLRQVKSRGETYVGPWLPEPYVTDFGDAVPDTAERAVLADSVSLAVLVVLESLSP 122 Query: 123 DERAVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXX 182 ERAVFVLRE FG+ Y EIA + + +Y DVDP + Sbjct: 123 LERAVFVLREAFGYPYAEIAAMLERGEAAVRQLAGRARKHVDERRPRY-DVDPAQRRDLT 181 Query: 183 XXXXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATE 242 GD+ L+A LAPD + DSGG+ A + + +++V R + G+ R+ + Sbjct: 182 ERFLAAAAEGDLAGLLATLAPDVRLVGDSGGRSKAPLRVLESSDKVGRFLLGVARQGVPD 241 Query: 243 LQVELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVA 293 + N PA+L GG+ + V+ +++V +I + Y++RNPDKL ++A Sbjct: 242 ATFHFLELNGGPALLVRSGGKPDSVVQVDVVDGRIQSMYIIRNPDKLVSLA 292 >tr|B5H7N6|B5H7N6_STRPR Tax_Id=457429 SubName: Full=RNA polymerase ECF-subfamily sigma factor;[Streptomyces pristinaespiralis ATCC 25486] Length = 292 Score = 173 bits (438), Expect = 3e-41 Identities = 101/280 (36%), Positives = 154/280 (55%), Gaps = 5/280 (1%) Query: 18 RPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTRQSLNALRAGA 77 RP+L +AY +LG +++DV+QE++LRW+A V++ + YL ++ TR +++ LR Sbjct: 9 RPVLTGVAYRMLGRIADAEDVVQEAWLRWSADRRDDVKEPRGYLVRITTRLAIDRLRHVQ 68 Query: 78 RRREEYVGXXXXXXXXXXXXXXXADL----VLAESVSMAMLVLLETLTPDERAVFVLREV 133 RRE YVG D VLAESVS+A+LV+LE+L+P ERAVFVLRE Sbjct: 69 SRRESYVGPWLPEPIVTDFGPSVPDTAERAVLAESVSLAVLVVLESLSPLERAVFVLREA 128 Query: 134 FGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXXXXXXSGD 193 FGF Y EIA + K ++ DVDP GD Sbjct: 129 FGFPYAEIATTLEKSEAAVRQLAGRARKHVEERKHRF-DVDPAECRDLTERFLSAASGGD 187 Query: 194 VEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVELVTCNSA 253 +E L+++LAPD + DSGGK A + + A++V R + + +++ + +V V N A Sbjct: 188 LEGLLSILAPDVRLVGDSGGKSKAPLRVMQSADKVGRFLVAISQQSVPDPEVRFVEVNGA 247 Query: 254 PAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVA 293 PA+L GG+ + ++ +E++ +I Y++RNPDKL A A Sbjct: 248 PALLVLSGGKPDSIMQVEVLDGRIQCVYIVRNPDKLLAFA 287 >tr|C4EM76|C4EM76_STRRS Tax_Id=479432 SubName: Full=RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, TIGR02957 family;[Streptosporangium roseum DSM 43021] Length = 300 Score = 172 bits (436), Expect = 4e-41 Identities = 106/289 (36%), Positives = 157/289 (54%), Gaps = 5/289 (1%) Query: 6 HSDEH-AERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQL 64 +SDE A F +RP L +AY +LGS E++DV+Q+++LR D + ++D +L Sbjct: 14 NSDEDLATEFDAIRPRLVGVAYGLLGSLDEAEDVVQDAWLRLGRADRAEIQDVTGWLVVT 73 Query: 65 VTRQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLV-LAESVSMAMLVLLETLTPD 123 V+R +L+ LR+ RREEYVG AD V LAES+SMAMLV+LE+L+P Sbjct: 74 VSRLALDVLRSARVRREEYVGPWLPEPVVTEADP--ADRVTLAESMSMAMLVVLESLSPA 131 Query: 124 ERAVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXX 183 ER FVL +VFG ++E+A AVG+ ++ +VD + Sbjct: 132 ERTAFVLHDVFGLPFEEVAQAVGRSPAACRQLAARARKHVAARAPRF-EVDADEHRRVVE 190 Query: 184 XXXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATEL 243 D++AL+A+L PD +D GG V+AAR+PV GA RVAR I G+ + Sbjct: 191 AFARASTGRDIDALLALLDPDVVLRSDGGGLVTAARRPVRGAGRVARFIAGVAERFGAGS 250 Query: 244 QVELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAV 292 + + N P +L + G L GV L + G +IT +++ NP+KL +V Sbjct: 251 RFTPIMVNGRPGLLRFRDGALSGVYALTVAGGRITEIHIVVNPEKLRSV 299 >tr|A3KKK3|A3KKK3_STRAM Tax_Id=278992 SubName: Full=Putative ECF-sigma factor;[Streptomyces ambofaciens ATCC 23877] Length = 295 Score = 172 bits (436), Expect = 4e-41 Identities = 100/291 (34%), Positives = 154/291 (52%), Gaps = 5/291 (1%) Query: 7 SDEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVT 66 +D + F RP+L +AY +LG +++DV+QE++LRW+A D S V + + YL ++ T Sbjct: 3 TDTATDVFEAHRPVLLGVAYRMLGRLADAEDVVQEAWLRWSAADRSGVHEPRGYLVRITT 62 Query: 67 RQSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADL----VLAESVSMAMLVLLETLTP 122 R +++ LR R E YVG AD VLA+SVS+A+LV+LE+L+P Sbjct: 63 RVAIDRLRQIKSRGETYVGPWLPEPYATDFGDAVADTAERAVLADSVSLAVLVVLESLSP 122 Query: 123 DERAVFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXX 182 ERAVFVLRE FG+ Y EIA + + +Y +VDP + Sbjct: 123 LERAVFVLREAFGYPYAEIAAMLERGEAAVRQLAGRARKHVDERRPRY-EVDPAQRRDLT 181 Query: 183 XXXXXXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATE 242 GD++ L+A+LAPD + DSGGK + V +++VAR + G K + Sbjct: 182 ERFLAAATEGDLDGLVALLAPDVRLVGDSGGKARVPLRVVDSSDKVARFLLGAAHKGVPD 241 Query: 243 LQVELVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVA 293 + + N PA+L G + + V L++ +I Y++RNPDKL ++A Sbjct: 242 VSFHFLELNGGPALLVLSGSEPDSVFQLDVAEGRIQAVYIIRNPDKLRSLA 292 >tr|B2T583|B2T583_BURPP Tax_Id=398527 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Burkholderia phytofirmans] Length = 293 Score = 172 bits (435), Expect = 6e-41 Identities = 103/290 (35%), Positives = 150/290 (51%), Gaps = 2/290 (0%) Query: 8 DEHAERFTLLRPLLFTIAYEILGSATESDDVLQESYLRWAAVDLSAVRDTKSYLAQLVTR 67 D+ F LRP L IAY +LGS E++D++Q+ +LRW A A+ + +++L + TR Sbjct: 2 DDDVLAFNGLRPRLQKIAYRMLGSVAEAEDIVQDVWLRWHATAREAIDNAEAWLVAVTTR 61 Query: 68 QSLNALRAGARRREEYVGXXXXXXXXXXXXXXXADLV-LAESVSMAMLVLLETLTPDERA 126 S++ LRA +RE Y G + A+ VS+A LVLLE LTPD RA Sbjct: 62 MSIDRLRAAKIQREHYAGIWLPEPEMTEFPATPEEATERADDVSVAFLVLLERLTPDARA 121 Query: 127 VFVLREVFGFDYDEIADAVGKPAPTXXXXXXXXXXXXXXXXKKYGDVDPQRNXXXXXXXX 186 F+LREVF DYDE+A A+GK + +V + + Sbjct: 122 AFLLREVFDADYDEVARAIGKTEAACRQLVSRAKAQLRDDRPR-SEVPRETHLRLLRTFV 180 Query: 187 XXXXSGDVEALMAMLAPDATWLADSGGKVSAARKPVVGAERVARAITGLIRKAATELQVE 246 GD A+ A+LA DA + D GGKV + +P+ G +R+A+ R+ EL V+ Sbjct: 181 QALQRGDFHAINALLAEDAKLIGDGGGKVQSFPEPMAGGQRIAQLFYASHRRYGDELSVK 240 Query: 247 LVTCNSAPAVLFYLGGQLEGVITLEIVGDKITNFYVMRNPDKLTAVARAH 296 LV N A+L ++ G+LE + E G++I +V RNPDKL +A AH Sbjct: 241 LVMLNGQWALLRFIEGELESAQSFETDGERIVRIHVQRNPDKLARIAAAH 290 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.318 0.133 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 1,728,065,510 Number of extensions: 55244838 Number of successful extensions: 134905 Number of sequences better than 10.0: 1053 Number of HSP's gapped: 134506 Number of HSP's successfully gapped: 1153 Length of query: 301 Length of database: 3,846,993,858 Length adjustment: 136 Effective length of query: 165 Effective length of database: 2,313,566,250 Effective search space: 381738431250 Effective search space used: 381738431250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 80 (35.4 bits)