BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_4816 (80 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HGA8|B2HGA8_MYCMM Tax_Id=216594 SubName: Full=Conserved hyp... 91 4e-17 tr|A0PL85|A0PL85_MYCUA Tax_Id=362242 SubName: Full=Conserved hyp... 91 4e-17 tr|Q7TZ04|Q7TZ04_MYCBO Tax_Id=1765 SubName: Full=PROBABLE CONSER... 45 0.003 tr|O33262|O33262_MYCTU Tax_Id=1773 SubName: Full=PROBABLE CONSER... 45 0.003 tr|C6DPT2|C6DPT2_MYCTK Tax_Id=478434 SubName: Full=Conserved mem... 45 0.003 tr|C1AQ44|C1AQ44_MYCBT Tax_Id=561275 SubName: Full=Putative tran... 45 0.003 tr|A5U4F4|A5U4F4_MYCTA Tax_Id=419947 SubName: Full=Putative cons... 45 0.003 tr|A1KKH1|A1KKH1_MYCBP Tax_Id=410289 SubName: Full=Probable cons... 45 0.003 tr|A4KIQ8|A4KIQ8_MYCTU Tax_Id=395095 SubName: Full=Conserved tra... 45 0.003 tr|A2VJM4|A2VJM4_MYCTU Tax_Id=348776 SubName: Full=Putative unch... 45 0.003 >tr|B2HGA8|B2HGA8_MYCMM Tax_Id=216594 SubName: Full=Conserved hypothetical transmembrane protein;[Mycobacterium marinum] Length = 80 Score = 90.9 bits (224), Expect = 4e-17 Identities = 49/80 (61%), Positives = 49/80 (61%) Query: 1 MRFVDFKAKTPLIGMSMVFGAMALVAVTAYLHAGWYSXXXXXXXXXXXXXXXXXXXRDIX 60 MRFVDFKAKTPLIGMSMVFGAMALVAVTAYLHAGWYS RDI Sbjct: 1 MRFVDFKAKTPLIGMSMVFGAMALVAVTAYLHAGWYSIIGYAIAAAVAAFGFIFTFRDIP 60 Query: 61 XXXXXXXXXXXAGSEPAPGG 80 AGSEPAPGG Sbjct: 61 TPPHTPGPDDPAGSEPAPGG 80 >tr|A0PL85|A0PL85_MYCUA Tax_Id=362242 SubName: Full=Conserved hypothetical transmembrane protein;[Mycobacterium ulcerans] Length = 80 Score = 90.9 bits (224), Expect = 4e-17 Identities = 49/80 (61%), Positives = 49/80 (61%) Query: 1 MRFVDFKAKTPLIGMSMVFGAMALVAVTAYLHAGWYSXXXXXXXXXXXXXXXXXXXRDIX 60 MRFVDFKAKTPLIGMSMVFGAMALVAVTAYLHAGWYS RDI Sbjct: 1 MRFVDFKAKTPLIGMSMVFGAMALVAVTAYLHAGWYSIIGYVIAAAVAAFGFIFTFRDIP 60 Query: 61 XXXXXXXXXXXAGSEPAPGG 80 AGSEPAPGG Sbjct: 61 TPPHTPGPDDPAGSEPAPGG 80 >tr|Q7TZ04|Q7TZ04_MYCBO Tax_Id=1765 SubName: Full=PROBABLE CONSERVED TRANSMEMBRANE PROTEIN;[Mycobacterium bovis] Length = 67 Score = 44.7 bits (104), Expect = 0.003 Identities = 20/32 (62%), Positives = 25/32 (78%) Query: 6 FKAKTPLIGMSMVFGAMALVAVTAYLHAGWYS 37 + +K PL GM+MVF AMA+VAVTAY GW+S Sbjct: 13 YASKPPLYGMAMVFLAMAVVAVTAYFRMGWWS 44 >tr|O33262|O33262_MYCTU Tax_Id=1773 SubName: Full=PROBABLE CONSERVED TRANSMEMBRANE PROTEIN;[Mycobacterium tuberculosis] Length = 67 Score = 44.7 bits (104), Expect = 0.003 Identities = 20/32 (62%), Positives = 25/32 (78%) Query: 6 FKAKTPLIGMSMVFGAMALVAVTAYLHAGWYS 37 + +K PL GM+MVF AMA+VAVTAY GW+S Sbjct: 13 YASKPPLYGMAMVFLAMAVVAVTAYFRMGWWS 44 >tr|C6DPT2|C6DPT2_MYCTK Tax_Id=478434 SubName: Full=Conserved membrane protein;[Mycobacterium tuberculosis] Length = 67 Score = 44.7 bits (104), Expect = 0.003 Identities = 20/32 (62%), Positives = 25/32 (78%) Query: 6 FKAKTPLIGMSMVFGAMALVAVTAYLHAGWYS 37 + +K PL GM+MVF AMA+VAVTAY GW+S Sbjct: 13 YASKPPLYGMAMVFLAMAVVAVTAYFRMGWWS 44 >tr|C1AQ44|C1AQ44_MYCBT Tax_Id=561275 SubName: Full=Putative transmembrane protein;[Mycobacterium bovis] Length = 67 Score = 44.7 bits (104), Expect = 0.003 Identities = 20/32 (62%), Positives = 25/32 (78%) Query: 6 FKAKTPLIGMSMVFGAMALVAVTAYLHAGWYS 37 + +K PL GM+MVF AMA+VAVTAY GW+S Sbjct: 13 YASKPPLYGMAMVFLAMAVVAVTAYFRMGWWS 44 >tr|A5U4F4|A5U4F4_MYCTA Tax_Id=419947 SubName: Full=Putative conserved transmembrane protein;[Mycobacterium tuberculosis] Length = 67 Score = 44.7 bits (104), Expect = 0.003 Identities = 20/32 (62%), Positives = 25/32 (78%) Query: 6 FKAKTPLIGMSMVFGAMALVAVTAYLHAGWYS 37 + +K PL GM+MVF AMA+VAVTAY GW+S Sbjct: 13 YASKPPLYGMAMVFLAMAVVAVTAYFRMGWWS 44 >tr|A1KKH1|A1KKH1_MYCBP Tax_Id=410289 SubName: Full=Probable conserved transmembrane protein;[Mycobacterium bovis] Length = 67 Score = 44.7 bits (104), Expect = 0.003 Identities = 20/32 (62%), Positives = 25/32 (78%) Query: 6 FKAKTPLIGMSMVFGAMALVAVTAYLHAGWYS 37 + +K PL GM+MVF AMA+VAVTAY GW+S Sbjct: 13 YASKPPLYGMAMVFLAMAVVAVTAYFRMGWWS 44 >tr|A4KIQ8|A4KIQ8_MYCTU Tax_Id=395095 SubName: Full=Conserved transmembrane protein;[Mycobacterium tuberculosis str. Haarlem] Length = 67 Score = 44.7 bits (104), Expect = 0.003 Identities = 20/32 (62%), Positives = 25/32 (78%) Query: 6 FKAKTPLIGMSMVFGAMALVAVTAYLHAGWYS 37 + +K PL GM+MVF AMA+VAVTAY GW+S Sbjct: 13 YASKPPLYGMAMVFLAMAVVAVTAYFRMGWWS 44 >tr|A2VJM4|A2VJM4_MYCTU Tax_Id=348776 SubName: Full=Putative uncharacterized protein;[Mycobacterium tuberculosis C] Length = 67 Score = 44.7 bits (104), Expect = 0.003 Identities = 20/32 (62%), Positives = 25/32 (78%) Query: 6 FKAKTPLIGMSMVFGAMALVAVTAYLHAGWYS 37 + +K PL GM+MVF AMA+VAVTAY GW+S Sbjct: 13 YASKPPLYGMAMVFLAMAVVAVTAYFRMGWWS 44 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.325 0.137 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 336,572,742 Number of extensions: 4928962 Number of successful extensions: 15821 Number of sequences better than 10.0: 10 Number of HSP's gapped: 15835 Number of HSP's successfully gapped: 10 Length of query: 80 Length of database: 3,846,993,858 Length adjustment: 51 Effective length of query: 29 Effective length of database: 3,271,958,505 Effective search space: 94886796645 Effective search space used: 94886796645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 75 (33.5 bits)