BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_4848 (385 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HGZ7|B2HGZ7_MYCMM Tax_Id=216594 SubName: Full=Prophage inte... 775 0.0 tr|A0PLK9|A0PLK9_MYCUA Tax_Id=362242 SubName: Full=Prophage inte... 608 e-172 tr|C0UD86|C0UD86_9ACTO Tax_Id=526225 SubName: Full=Site-specific... 192 8e-47 tr|B1S8A5|B1S8A5_9BIFI Tax_Id=473819 SubName: Full=Putative unch... 179 7e-43 tr|C1B977|C1B977_RHOOB Tax_Id=632772 SubName: Full=Putative inte... 177 2e-42 tr|A7A695|A7A695_BIFAD Tax_Id=411481 SubName: Full=Putative unch... 175 1e-41 tr|Q1B2F2|Q1B2F2_MYCSS Tax_Id=164756 SubName: Full=Phage integra... 172 8e-41 tr|Q5Z1Y5|Q5Z1Y5_NOCFA Tax_Id=37329 SubName: Full=Putative phage... 170 3e-40 tr|B7GTE6|B7GTE6_BIFLI Tax_Id=391904 SubName: Full=Phage integra... 170 3e-40 tr|C5E9Y7|C5E9Y7_BIFLO Tax_Id=537937 SubName: Full=Putative unch... 169 5e-40 tr|C0U2C7|C0U2C7_9ACTO Tax_Id=526225 SubName: Full=Site-specific... 167 2e-39 tr|D0L6E4|D0L6E4_GORB4 Tax_Id=526226 SubName: Full=Integrase fam... 166 5e-39 tr|C0U3S3|C0U3S3_9ACTO Tax_Id=526225 SubName: Full=Site-specific... 164 2e-38 tr|C5ECP8|C5ECP8_BIFLO Tax_Id=537937 SubName: Full=Putative unch... 162 7e-38 tr|C1A0A2|C1A0A2_RHOE4 Tax_Id=234621 SubName: Full=Putative inte... 162 9e-38 tr|C7MYH0|C7MYH0_SACVD Tax_Id=471857 SubName: Full=Site-specific... 157 2e-36 tr|Q2JDR1|Q2JDR1_FRASC Tax_Id=106370 SubName: Full=Phage integra... 156 5e-36 tr|C6AJE5|C6AJE5_BIFAS Tax_Id=555970 SubName: Full=Phage-related... 155 8e-36 tr|C6A8T7|C6A8T7_BIFLB Tax_Id=580050 SubName: Full=Phage-related... 155 8e-36 tr|B8DSS2|B8DSS2_BIFA0 Tax_Id=442563 SubName: Full=Phage-related... 155 8e-36 tr|B2EB98|B2EB98_BIFAN Tax_Id=486409 SubName: Full=Phage-related... 155 8e-36 tr|A1UHF4|A1UHF4_MYCSK Tax_Id=189918 SubName: Full=Phage integra... 153 4e-35 tr|C1YS76|C1YS76_NOCDA Tax_Id=446468 SubName: Full=Site-specific... 150 2e-34 tr|Q5Z3B0|Q5Z3B0_NOCFA Tax_Id=37329 SubName: Full=Putative phage... 141 1e-31 tr|Q6AFR5|Q6AFR5_LEIXX Tax_Id=59736 SubName: Full=Phage-related ... 137 2e-30 tr|C5CAV2|C5CAV2_MICLC Tax_Id=465515 SubName: Full=Site-specific... 137 2e-30 tr|B7GR09|B7GR09_BIFLI Tax_Id=391904 SubName: Full=Phage integra... 137 3e-30 tr|A4X0Z3|A4X0Z3_SALTO Tax_Id=369723 SubName: Full=Phage integra... 135 1e-29 tr|C4RQL8|C4RQL8_9ACTO Tax_Id=219305 SubName: Full=Integrase;[Mi... 130 2e-28 tr|Q859H7|Q859H7_9VIRU Tax_Id=219292 (intM)SubName: Full=Integra... 130 2e-28 tr|C0W2C9|C0W2C9_9ACTO Tax_Id=525246 SubName: Full=Phage integra... 127 2e-27 tr|C0U7T3|C0U7T3_9ACTO Tax_Id=526225 SubName: Full=Site-specific... 125 9e-27 tr|Q82H18|Q82H18_STRAW Tax_Id=33903 (int8)SubName: Full=Putative... 123 4e-26 tr|C0WJX9|C0WJX9_9CORY Tax_Id=525260 SubName: Full=Possible phag... 121 2e-25 tr|B0LS68|B0LS68_9ACTO Tax_Id=35758 (int1)SubName: Full=Int1;[St... 121 2e-25 tr|C4LJG5|C4LJG5_CORK4 Tax_Id=645127 (int8)SubName: Full=Putativ... 120 3e-25 tr|Q6NK56|Q6NK56_CORDI Tax_Id=1717 SubName: Full=Putative phage ... 118 1e-24 tr|D1BBK2|D1BBK2_9MICO Tax_Id=446469 SubName: Full=Site-specific... 117 3e-24 tr|D1ADD7|D1ADD7_THECU Tax_Id=471852 SubName: Full=Integrase fam... 116 4e-24 tr|B9KXE0|B9KXE0_THERP Tax_Id=309801 SubName: Full=Transposase;[... 114 2e-23 tr|O55248|O55248_9VIRU Tax_Id=65388 (int)SubName: Full=Integrase... 114 2e-23 tr|B5U4N9|B5U4N9_9CAUD Tax_Id=563119 (40)SubName: Full=Gp40;[Myc... 114 2e-23 tr|Q0RPW7|Q0RPW7_FRAAA Tax_Id=326424 SubName: Full=Integrase;[Fr... 112 6e-23 tr|C0W4G9|C0W4G9_9ACTO Tax_Id=525246 SubName: Full=Phage integra... 112 6e-23 tr|A6W8N8|A6W8N8_KINRD Tax_Id=266940 SubName: Full=Phage integra... 111 1e-22 tr|A3Q4Z2|A3Q4Z2_MYCSJ Tax_Id=164757 SubName: Full=Phage integra... 110 4e-22 tr|C0UDI1|C0UDI1_9ACTO Tax_Id=526225 SubName: Full=Site-specific... 110 4e-22 tr|A1SE70|A1SE70_NOCSJ Tax_Id=196162 SubName: Full=Phage integra... 108 9e-22 tr|C0FLX6|C0FLX6_9CLOT Tax_Id=411486 SubName: Full=Putative unch... 108 1e-21 tr|B0PGN2|B0PGN2_9FIRM Tax_Id=445972 SubName: Full=Putative unch... 107 2e-21 >tr|B2HGZ7|B2HGZ7_MYCMM Tax_Id=216594 SubName: Full=Prophage integrase;[Mycobacterium marinum] Length = 385 Score = 775 bits (2000), Expect = 0.0 Identities = 384/385 (99%), Positives = 385/385 (100%) Query: 1 VAGSVPRGIRKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEA 60 +AGSVPRGIRKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEA Sbjct: 1 MAGSVPRGIRKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEA 60 Query: 61 AIGARRFDPRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEIS 120 AIGARRFDPRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEIS Sbjct: 61 AIGARRFDPRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEIS 120 Query: 121 RKDVQQFIGGLTVGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYL 180 RKDVQQFIGGLTVGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYL Sbjct: 121 RKDVQQFIGGLTVGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYL 180 Query: 181 SATEVAALAHACGDQGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRI 240 SATEVAALAHACGDQGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRI Sbjct: 181 SATEVAALAHACGDQGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRI 240 Query: 241 IVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHWNKA 300 IVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHWNKA Sbjct: 241 IVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHWNKA 300 Query: 301 LKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVA 360 LKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVA Sbjct: 301 LKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVA 360 Query: 361 TNLDRLNDVAKDQANGQEPDTPKHP 385 TNLDRLNDVAKDQANGQEPDTPKHP Sbjct: 361 TNLDRLNDVAKDQANGQEPDTPKHP 385 >tr|A0PLK9|A0PLK9_MYCUA Tax_Id=362242 SubName: Full=Prophage integrase;[Mycobacterium ulcerans] Length = 389 Score = 608 bits (1567), Expect = e-172 Identities = 292/386 (75%), Positives = 334/386 (86%), Gaps = 1/386 (0%) Query: 1 VAGSVPRGIRKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEA 60 +AG+ PRGIRKR N+AG+ RYQVRYL+RDP++PSGWVETS+TF T+REA+AFK++RD EA Sbjct: 1 MAGNTPRGIRKRLNAAGEPRYQVRYLIRDPDAPSGWVETSATFPTLREAKAFKSERDNEA 60 Query: 61 AIGARRFDPRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEIS 120 A+GARRFDPRLGR LS IWTQ+S SK+PAVSPKTWSGY QHWELRI PRFGHVPVDEI+ Sbjct: 61 ALGARRFDPRLGRTPLSRIWTQFSDSKKPAVSPKTWSGYNQHWELRIKPRFGHVPVDEIT 120 Query: 121 RKDVQQFIGGLTVGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYL 180 R DV+ F+ GLTVGPWAK++TLRLLRSILD+A +DGRIH NPA GVS+GRIP RERHRYL Sbjct: 121 RADVRAFVDGLTVGPWAKVSTLRLLRSILDVAHQDGRIHRNPALGVSAGRIPERERHRYL 180 Query: 181 SATEVAALAHACGDQGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRI 240 +A EV LA ACGDQGD+VTILA+TGLRWSE VGLRV DIDL ARRLYVR+AAP+VEG I Sbjct: 181 TAQEVRMLATACGDQGDVVTILAYTGLRWSEPVGLRVKDIDLTARRLYVRRAAPEVEGHI 240 Query: 241 IVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHWNKA 300 ++GPPKTRA +RTVPLP++V+D K RI ++ + A+TS NG LRSNNWRRHTHWNKA Sbjct: 241 VIGPPKTRAGIRTVPLPQVVVDIFKGRITGQAPDQPAVTSTNGAMLRSNNWRRHTHWNKA 300 Query: 301 LKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVA 360 LK T LAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLY+DELD VA Sbjct: 301 LKSTDLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYADELDQVA 360 Query: 361 TNLDRLNDV-AKDQANGQEPDTPKHP 385 TNLD+L+ + GQEPD P P Sbjct: 361 TNLDQLHATEIQTPTTGQEPDEPNQP 386 >tr|C0UD86|C0UD86_9ACTO Tax_Id=526225 SubName: Full=Site-specific recombinase XerD;[Geodermatophilus obscurus DSM 43160] Length = 365 Score = 192 bits (487), Expect = 8e-47 Identities = 128/365 (35%), Positives = 193/365 (52%), Gaps = 14/365 (3%) Query: 15 SAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFDPRLGRA 74 S G RY+ RY RD +G + F +A+ + D A + P GR Sbjct: 11 SDGSKRYRSRY--RD----AGGRQHEKRFQRRVDAQRW-LDEQTSAIVTQTWTAPERGRV 63 Query: 75 SLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLTVG 134 ++ A W + + Q + P T Y +I PR+G + +I+ DV ++ L G Sbjct: 64 TVEA-WAEQWLAAQTGLKPSTLYRYRSLLRAQILPRWGRHRLADITHADVAAWVAQLVAG 122 Query: 135 ---PWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYLSATEVAALAHA 191 P R+L IL +A DGRI NPA GV R R R+L+ EV LA A Sbjct: 123 GLAPPTVRQAHRVLALILTLAVRDGRIPRNPAAGVPLPRT-RRADPRFLTREEVERLADA 181 Query: 192 CGDQGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPPKTRAAV 251 G+ GD+V +LA+TGLR+ E+ LRV +D RRL V ++A +V G + G PKT Sbjct: 182 AGEYGDVVRLLAYTGLRFGEMAALRVRRVDFLRRRLTVAESATEVGGTVEYGTPKTHQQ- 240 Query: 252 RTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHWNKALKKTGLAPLTI 311 RTVP+P ++++ L R + + +TSP G LRS N+RR ++ A K GL L+ Sbjct: 241 RTVPIPAVLVEPLSRRCGGKGRDDLVLTSPGGAVLRSGNFRRR-FFDPAAKAAGLEDLSP 299 Query: 312 HDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATNLDRLNDVAK 371 HDLRHT ASL SGA+++ VQ+ +GH++ +T ++YS L+ D+L +A +D ++ + Sbjct: 300 HDLRHTAASLLVASGANVKAVQRMLGHASAAMTLDVYSGLFDDDLGALADRMDAAHEASV 359 Query: 372 DQANG 376 + +G Sbjct: 360 TRRHG 364 >tr|B1S8A5|B1S8A5_9BIFI Tax_Id=473819 SubName: Full=Putative uncharacterized protein;[Bifidobacterium dentium ATCC 27678] Length = 367 Score = 179 bits (453), Expect = 7e-43 Identities = 118/364 (32%), Positives = 185/364 (50%), Gaps = 12/364 (3%) Query: 16 AGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFDPRLGRAS 75 +G RY+V Y RDP+ T F ++A+ + A A DP G+ Sbjct: 10 SGDKRYRVTY--RDPDHSQ---RTKRGFRRRKDAQDYLARMTTYIADNDY-IDPNAGKTL 63 Query: 76 LSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLTVGP 135 + + K+ V PK ++ W + + +G+ + I ++Q ++ L Sbjct: 64 VCQFADTWLKGKKNVVKPKYYADLECSWRVHVCNAWGNREIASIRHSEIQTWVSELAKKR 123 Query: 136 WAKLATLR---LLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYLSATEVAALAHAC 192 A + T+R +L+ +LD+A DG I NPA G R +ER YL+ +V LAHA Sbjct: 124 SATI-TIRAHGVLKGVLDLAVRDGSIRRNPADGCQLPRKQRKER-TYLTPAQVIDLAHAA 181 Query: 193 GDQGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPPKTRAAVR 252 G ++ L F GLRW E LRV +D + RL VR + + G PKT VR Sbjct: 182 GTYQALILTLGFCGLRWGEAAALRVKHVDTQNNRLRVRLSWVRSGKKHFEGAPKTWE-VR 240 Query: 253 TVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHWNKALKKTGLAPLTIH 312 VP+P V+ A+K + E + ++ T+P+GG LR + + H + +AL+ +G+ LT H Sbjct: 241 DVPVPDQVMSAIKEQCEGKGPEDLVFTAPSGGHLREQSAKNHGWYARALRDSGVPTLTCH 300 Query: 313 DLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATNLDRLNDVAKD 372 DLRHT AS+A SGA+++ VQ+ +GH +T + Y+DL+ +LD VAT++ AK Sbjct: 301 DLRHTAASIAISSGANVKAVQRMLGHKNAAMTLDTYADLFDTDLDDVATSISSKIAAAKT 360 Query: 373 QANG 376 +G Sbjct: 361 SNSG 364 >tr|C1B977|C1B977_RHOOB Tax_Id=632772 SubName: Full=Putative integrase;[Rhodococcus opacus] Length = 368 Score = 177 bits (449), Expect = 2e-42 Identities = 115/355 (32%), Positives = 191/355 (53%), Gaps = 12/355 (3%) Query: 14 NSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFDPRLGR 73 ++A R++VRY R P S F + R+A+ F A + E G P+LG Sbjct: 8 DTAAGKRWEVRY--RTPERKS---TRRRGFTSKRQAQDFAATVEVEKMRG-EYVPPKLGH 61 Query: 74 ASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGL-- 131 ++ + + K+ + P + W + + PR+G V + ++ V+++I L Sbjct: 62 ITMGEVGPAWLERKESDLKPSAYRSLETSWRVHVKPRWGTVRLSDVDLDAVERWIADLNR 121 Query: 132 TVGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYLSATEVAALAHA 191 T G + +L ILD A + R+ NPA+GV + R+ YL+ EVAALA + Sbjct: 122 TKGATVVIRAYGVLAGILDSAVKGKRLARNPARGVENLPRKQRKPRVYLTHDEVAALADS 181 Query: 192 CGDQGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPPKTRAAV 251 G++ +V +LA+ GLRW E +GLRV +DL +R V + A V + VG PK+ + Sbjct: 182 AGEKRALVLVLAYCGLRWGEAIGLRVRHLDLLRKRATVVENAVQVNMEMHVGTPKSHKS- 240 Query: 252 RTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHW-NKALKKTGLAPLT 310 R+VP+P V++ L + E + + +G +L+ + T W KA++K+G+ LT Sbjct: 241 RSVPIPGFVVEELARQCEGKGRDDLVFPGRDGDYLKRS--VSFTGWFTKAVEKSGVPRLT 298 Query: 311 IHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATNLDR 365 HDLRHT ASL+ +GA+++ +Q+ +GH++ +T + YSDL+ D+LD V LD+ Sbjct: 299 PHDLRHTCASLSIAAGANVKSLQRMLGHASAAMTLDTYSDLFEDDLDAVGDALDQ 353 >tr|A7A695|A7A695_BIFAD Tax_Id=411481 SubName: Full=Putative uncharacterized protein;[Bifidobacterium adolescentis L2-32] Length = 389 Score = 175 bits (443), Expect = 1e-41 Identities = 119/368 (32%), Positives = 189/368 (51%), Gaps = 19/368 (5%) Query: 9 IRKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFD 68 IR+ T +G+ RY+VRY P G F +A A+ A A D Sbjct: 5 IRQYTTKSGK-RYEVRY-----RKPDGSSTGRRGFKRKMDADAWGAANVTAAKSVGAYID 58 Query: 69 PRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFI 128 P+ GR + W + A+K+ P W + + P++G + I+R +VQ+++ Sbjct: 59 PQAGRRLVEDFWEPWLAAKKTKAKPSYIKSLEDAWRVHVEPQWGMREMQSITRDEVQRWV 118 Query: 129 GGLTVGPWAKLATLR---LLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYLSATEV 185 L G + T+R LLRS+++ A+ D IH NP G+ R R +H YLSA E+ Sbjct: 119 TDLA-GRRSASVTIRAENLLRSLMERAKADRCIHDNPCDGIELPRKQVR-KHVYLSADEL 176 Query: 186 AALAHACGDQGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPP 245 + +A CG + IV L G+RW ELV LRV D+DL+ RL++ ++ + R++ P Sbjct: 177 SRVAMQCGWREPIVLTLGLCGMRWGELVALRVEDVDLQRCRLHIYRSITRLSSRLVETDP 236 Query: 246 KTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGF--LRSNNWR--RHTHW-NKA 300 KT R+V P ++ L + E R + + T+P N W R W A Sbjct: 237 KTHDG-RSVMFPLVLRPLLARQCEGRRSSDFLFTAPGEPLDEPMGNGWNPTRSDGWFAVA 295 Query: 301 LKKTGL--APLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDH 358 L++ G+ +TIHDLRHT ASL +SGA+++ VQ+ +GH + +T ++Y+DL+ D+LD Sbjct: 296 LRRAGVDRGHMTIHDLRHTAASLMVQSGANVKTVQRQLGHKSAAMTLDVYADLFDDDLDD 355 Query: 359 VATNLDRL 366 ++ + L Sbjct: 356 LSERMGGL 363 >tr|Q1B2F2|Q1B2F2_MYCSS Tax_Id=164756 SubName: Full=Phage integrase;[Mycobacterium sp.] Length = 433 Score = 172 bits (435), Expect = 8e-41 Identities = 108/307 (35%), Positives = 170/307 (55%), Gaps = 18/307 (5%) Query: 69 PRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFI 128 P+ GR S+ ++ ++ + Q + T S W + + PR+ V V ++ DV+ ++ Sbjct: 72 PKAGRVSVGELYAKWVGT-QSHLKKTTASTRRYTWPVYVEPRWSAVAVADVQTTDVRAWV 130 Query: 129 GGLTVGPWAKLATLR----LLRSILDMAREDGRIHINPAQGVSSGRIPARERHR--YLSA 182 +T A AT+ +LR IL+MA ED RI NP G+ ++P R+R YL+ Sbjct: 131 QSMT-SSGAGAATVENAVGILRQILEMAVEDRRIARNPCTGI---KLPRRKRRPRGYLTH 186 Query: 183 TEVAALAHACGDQGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIV 242 +V LA G +V LA+TGLRW E+ LRVGD + RR++VR++ +VEG++ Sbjct: 187 RQVEQLAVEVGTDATVVRFLAYTGLRWGEMAALRVGDAKMLRRRVHVRESVTEVEGQLEW 246 Query: 243 GPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHWNKALK 302 PK+ R VP P + D L + + + +P GG LR +NWRR +NKA+K Sbjct: 247 SSPKSYEQ-RMVPFPAFLADELAVLMIGKKPDDLIFAAPEGGVLRVSNWRRRV-FNKAVK 304 Query: 303 K-----TGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELD 357 + +T HDLRHT ASLA +GA+++ VQ +GH++ +T + Y+DL+ D+L+ Sbjct: 305 RLLEKDATFPVVTPHDLRHTAASLAISAGANVKAVQTMLGHASAVLTLDTYADLFPDDLE 364 Query: 358 HVATNLD 364 V+ LD Sbjct: 365 MVSAALD 371 >tr|Q5Z1Y5|Q5Z1Y5_NOCFA Tax_Id=37329 SubName: Full=Putative phage integrase;[Nocardia farcinica] Length = 403 Score = 170 bits (430), Expect = 3e-40 Identities = 112/332 (33%), Positives = 169/332 (50%), Gaps = 12/332 (3%) Query: 38 ETSSTFATMREARAFKADRDGEAAIGARRFDPRLGRASLSAIWTQYSASKQPAVSPKTWS 97 E + FA +A+++ D A + P GR ++ I T + P+ T S Sbjct: 51 ENTKRFARKVDAQSW-LDAQTAAVVSGVHAPPSAGRVTVDVIATAW-LDNHPSWEESTRS 108 Query: 98 GYAQHWELRISPRFGHVPVDEISRKDVQQFI-----GGLTVGPWAKLATLRLLRSILDMA 152 Y + I PR+G+V V +++ +++QQ++ GG G K L +L I D A Sbjct: 109 RYRSVVDAHIRPRWGNVRVADLAHEEIQQWVIEQVSGGAAGGTVRK--NLGVLSQICDYA 166 Query: 153 REDGRIHINPAQGVSSGRIPARERHRYLSATEVAALAHACGDQGDIVTILAFTGLRWSEL 212 RI +NP V+ + +R RYLS EV LA G V +LA+ GLR++EL Sbjct: 167 VITRRIAVNPCSTVNRPKQRLAKR-RYLSGMEVERLAEQAGGNWLTVMVLAYCGLRFAEL 225 Query: 213 VGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRS 272 GL+V + L+ RRL + + +V+G ++ PK R+VP P + + L+ + R Sbjct: 226 AGLQVSSVSLQRRRLQIERTITEVDGVLVTKAPKDHQR-RSVPFPAFLAEPLERHLAGRR 284 Query: 273 TKEQAITSPNGGFLRSNNWRRHTHWNKALKKTGLAPLTIHDLRHTYASLARKSGADLRYV 332 + TS G LR N RR W+ A K GL LT H++RHT ASLA GA + + Sbjct: 285 PDSEVFTSSTGAILRVRNMRR-AWWDGAAKAAGLEGLTPHEMRHTAASLAVSHGASVLAL 343 Query: 333 QKTMGHSTPTVTANIYSDLYSDELDHVATNLD 364 Q+ +GH P+ T + Y+DL+ D+LD VA LD Sbjct: 344 QRMLGHDKPSTTLDFYADLFDDDLDEVACKLD 375 >tr|B7GTE6|B7GTE6_BIFLI Tax_Id=391904 SubName: Full=Phage integrase family protein;[Bifidobacterium longum subsp. infantis] Length = 396 Score = 170 bits (430), Expect = 3e-40 Identities = 120/395 (30%), Positives = 197/395 (49%), Gaps = 36/395 (9%) Query: 9 IRKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFD 68 + + S G+ RY+VRY P G F +A + A R A D Sbjct: 4 VTRYKTSKGETRYRVRY-----RKPDGTQTDKRGFKRKIDAENWAAKRVTTAKAEGTYID 58 Query: 69 PRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFI 128 P+ G+A++ + + A K+ + P + WE + P +G+ PV ++R+ QQ++ Sbjct: 59 PQAGKATVGELGPAWLAKKKLSTKPSHYRTLEGAWEKWVKPEWGNTPVSAVTRETTQQWV 118 Query: 129 GGLTVGPWAK------------------LATLRLLRSILDMAREDGRIHINPAQGVSSGR 170 G++ G K L +L ILD A++D RI NPA+G+ R Sbjct: 119 TGISQGKTVKDERGNEIVLAKPRSASVVLRAHGVLAGILDDAKKDRRIPDNPARGIELPR 178 Query: 171 IPARERHRYLSATEVAALAHACGD-QGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYV 229 R++H YL+A ++ LA + + D+V +L G+RW EL+ LRV D+DL+ R+Y+ Sbjct: 179 -KRRKKHVYLTAEQLDRLAGSVTPWRRDLVLVLGLCGMRWGELIPLRVMDVDLEKHRIYI 237 Query: 230 RQAAPDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPRI-ENRSTKEQAITSPNGGFLRS 288 +AP V G II KT A R + P +V+D + R+ +R + P + Sbjct: 238 GVSAPMVGGVIIPDDTKTYKA-RAIMYP-VVLDPIMRRLCADRKPGDLLFEQPGREGMMI 295 Query: 289 NNW---RRHTHW-NKALKKTGL-APLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTV 343 W R W + L++ G+ LTIHDLRHT ASL ++GA+++ VQ+ +GH + + Sbjct: 296 REWGNASRDDGWLSVGLRRAGIPGHLTIHDLRHTAASLMVRAGANVKAVQRQLGHKSAAM 355 Query: 344 TANIYSDLYSDELDHVATNLDRL---NDVAKDQAN 375 T ++Y+DL+ D+LD ++ + + +V K AN Sbjct: 356 TLDVYADLFDDDLDELSERMGEMLARENVGKMWAN 390 >tr|C5E9Y7|C5E9Y7_BIFLO Tax_Id=537937 SubName: Full=Putative uncharacterized protein;[Bifidobacterium longum subsp. infantis CCUG 52486] Length = 396 Score = 169 bits (428), Expect = 5e-40 Identities = 120/395 (30%), Positives = 197/395 (49%), Gaps = 36/395 (9%) Query: 9 IRKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFD 68 + + S G+ RY+VRY P G F +A + A R A D Sbjct: 4 VTRYKTSKGETRYRVRY-----RKPDGTQTDKRGFKRKVDAENWAAKRVTVAKAEGTYID 58 Query: 69 PRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFI 128 P+ G+A++ + + A K+ + P + WE + P +G+ PV ++R+ QQ++ Sbjct: 59 PQAGKATVGELAPAWLAKKKLSTKPSHYRTLEGAWEKWVKPEWGNTPVSAVTRETTQQWV 118 Query: 129 GGLTVGPWAK------------------LATLRLLRSILDMAREDGRIHINPAQGVSSGR 170 G++ G K L +L ILD A++D RI NPA+G+ R Sbjct: 119 TGISQGKTVKDERGNEIVLAKPRSASVVLRAHGVLAGILDDAKKDRRIPDNPARGIELPR 178 Query: 171 IPARERHRYLSATEVAALAHACGD-QGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYV 229 R++H YL+A ++ LA + + D+V +L G+RW EL+ LRV D+DL+ R+Y+ Sbjct: 179 -KRRKKHVYLTAEQLDRLAGSVTPWRRDLVLVLGLCGMRWGELIPLRVMDVDLEKHRIYI 237 Query: 230 RQAAPDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPRI-ENRSTKEQAITSPNGGFLRS 288 +AP V G II KT A R + P +V+D + R+ +R + P + Sbjct: 238 GVSAPMVGGVIIPDDTKTYKA-RAIMYP-VVLDPIMRRLCADRKPGDLLFEQPGREGMMI 295 Query: 289 NNW---RRHTHW-NKALKKTGL-APLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTV 343 W R W + L++ G+ LTIHDLRHT ASL ++GA+++ VQ+ +GH + + Sbjct: 296 REWGNASRDDGWLSVGLRRAGIPGHLTIHDLRHTAASLMVRAGANVKAVQRQLGHKSAAM 355 Query: 344 TANIYSDLYSDELDHVATNLDRL---NDVAKDQAN 375 T ++Y+DL+ D+LD ++ + + +V K AN Sbjct: 356 TLDVYADLFDDDLDELSERMGEMLARENVGKMWAN 390 >tr|C0U2C7|C0U2C7_9ACTO Tax_Id=526225 SubName: Full=Site-specific recombinase XerD;[Geodermatophilus obscurus DSM 43160] Length = 319 Score = 167 bits (424), Expect = 2e-39 Identities = 101/278 (36%), Positives = 157/278 (56%), Gaps = 8/278 (2%) Query: 91 VSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLTVGPWAKLATLR----LLR 146 + P T Y + P +G + +++ DV ++ L +G + T+R + Sbjct: 1 MKPSTLYRYGNLLRTHVLPTWGKHQLADVTHADVAVWVAKL-LGQGSAAGTVRQAHRVFS 59 Query: 147 SILDMAREDGRIHINPAQGVSSGRIPARERHRYLSATEVAALAHACGDQGDIVTILAFTG 206 +L +A DGRI NPA+ V R+ R R+L+ EV LA A G +GD++ +LA+TG Sbjct: 60 LLLGLAVRDGRIPRNPAERVPLPRV-IRSEPRFLTHDEVERLADAAGAEGDVIRLLAYTG 118 Query: 207 LRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKP 266 LR+ E+ LRV +D RRL + +A +V GR+ G PKT RTVPLP + + L Sbjct: 119 LRFGEMAALRVRRVDFLRRRLTIAEAVTEVGGRLEFGTPKTHQQ-RTVPLPATLAEPLAR 177 Query: 267 RIENRSTKEQAITSPNGGFLRSNNWRRHTHWNKALKKTGLAPLTIHDLRHTYASLARKSG 326 R E + + +T+ +G LR NWRR ++ A++ GL+ +T HDLRHT ASLA SG Sbjct: 178 RCEGKQGDDLLVTTASGTVLRLRNWRR-VVFDPAVRAAGLSDVTPHDLRHTAASLAVSSG 236 Query: 327 ADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATNLD 364 A ++ VQ+ +GH++ +T ++YS L D+L +A +D Sbjct: 237 ATVKAVQRMLGHASAAMTLDVYSGLVDDDLAALADRMD 274 >tr|D0L6E4|D0L6E4_GORB4 Tax_Id=526226 SubName: Full=Integrase family protein;[Gordonia bronchialis] Length = 390 Score = 166 bits (420), Expect = 5e-39 Identities = 116/353 (32%), Positives = 189/353 (53%), Gaps = 24/353 (6%) Query: 24 RYLVRDPNSPSGWV----ETSSTFATMREARAFKADRDGEAAIGARRFDPRLGRASLSAI 79 R+LVR WV E S +F +A A+ ++ G R R GR +++A+ Sbjct: 29 RWLVR-------WVDESREHSKSFDKKSDATAYLSELTTARNTG-RFVHERAGRVTVAAL 80 Query: 80 WTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLT---VGPW 136 W +++A + +S KT + + + PR+ V V +I V+ ++ + VG Sbjct: 81 WGEWTA-QAGHLSQKTIASRETAYCCHVMPRWAGVTVGDIRVTAVRAWVADMAQAGVGVP 139 Query: 137 AKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYLSATEVAALAHACGDQG 196 + +LR + ++A +D RI NP V R +R YLS V ALA A + Sbjct: 140 TIERAVGVLRGLCELAVDDRRISANPCVNVKLPRRSHPDR-AYLSVPHVQALAEAITFRP 198 Query: 197 DIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPPKTRAAVRTVPL 256 ++V +LA+TGLRW E+ LRV D D+ RR+ V ++ +V G ++ G PKT R+VP Sbjct: 199 EVVELLAYTGLRWGEMAALRVSDFDMLRRRVDVSRSVTEVRGHLVWGTPKTHER-RSVPF 257 Query: 257 PRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHWNKALKKTGLA-----PLTI 311 P ++ + + P + + + T+ +GG LR++ WR ++KA+K A L+ Sbjct: 258 PAVLAETIAPLMAGKGRDDLVFTAESGGVLRNSIWRPRV-FDKAVKGCQRADDTFPSLSP 316 Query: 312 HDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATNLD 364 HDLRHT ASLA +GA+++ VQ+ +GH+ ++T + Y+DL+ D+LD VA LD Sbjct: 317 HDLRHTAASLAISAGANVKAVQRMLGHAKASMTLDTYADLFDDDLDLVAGALD 369 >tr|C0U3S3|C0U3S3_9ACTO Tax_Id=526225 SubName: Full=Site-specific recombinase XerD;[Geodermatophilus obscurus DSM 43160] Length = 370 Score = 164 bits (415), Expect = 2e-38 Identities = 120/357 (33%), Positives = 187/357 (52%), Gaps = 21/357 (5%) Query: 34 SGWVETSSTFATMREARAFKADRDGEAAIGARRF-DPRLGRASLSAIWTQYSASKQPAVS 92 +G T+ F R+A ++ ++ +AAI + DP + ++ W++ + + + Sbjct: 17 AGKQHTNGNFHRKRDADLWEQEQ--KAAIRNDTWVDPSRSKMTVGQ-WSETWIAGRVHLK 73 Query: 93 PKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLTVGPWAKLATLR------LLR 146 PKT S Y R+ P + VP+ I DV ++ + A+L+ R LL Sbjct: 74 PKTLSSYRSLLATRVLPTWNTVPLTRIRHSDVVAWVAAMR----AELSASRTRQAYHLLS 129 Query: 147 SILDMAREDGRIHINPAQGVSSGRIPARERHRYLSATEVAALAHACGDQGDIVTILAFTG 206 S+LD A D R+ NPA GV R+P +R RYL+ ++A LA CG +V + +TG Sbjct: 130 SMLDDAVRDNRLARNPATGVGLPRLPKSDR-RYLTHQQLADLADGCGPHRLMVLVAGYTG 188 Query: 207 LRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKP 266 LRW EL GLR ++ R+ V +A +V+G ++ G PKT R+V +PR + + L Sbjct: 189 LRWGELTGLRARRVESLRGRIDVVEAVTEVDGGMVFGTPKTHQH-RSVVVPRFIREDLGR 247 Query: 267 RIENRSTKEQAITSPNGGFLRSNNWRRHTHWNKALKKTGLAPLTIHDLRHTYASLARKSG 326 ++ ++ + S G LR N+RR +++A GL+ LT H+LRHT ASLA SG Sbjct: 248 QLAGKAPADLVFASRAGTPLRVQNFRRDW-FDRAAHAVGLSGLTPHELRHTAASLAIASG 306 Query: 327 ADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATNLDRLNDVAKDQA-NGQEPDTP 382 A ++ VQ +GH++ +T + Y L+ DELD VA DRL+ DQ PD P Sbjct: 307 ASVKGVQSMLGHASAQMTLDRYGHLFPDELDAVA---DRLDAARADQVLTEPRPDAP 360 >tr|C5ECP8|C5ECP8_BIFLO Tax_Id=537937 SubName: Full=Putative uncharacterized protein;[Bifidobacterium longum subsp. infantis CCUG 52486] Length = 391 Score = 162 bits (410), Expect = 7e-38 Identities = 114/371 (30%), Positives = 179/371 (48%), Gaps = 22/371 (5%) Query: 9 IRKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFD 68 I + + G+ RY+VRY P G F +A + A+ A D Sbjct: 4 ITRYRTAKGENRYRVRY-----RKPDGTQTDKRGFRRKIDAETWAAEHVTIAKATGSYID 58 Query: 69 PRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFI 128 P G+ + + Q++A K+P + S W+ ++ + I+ +VQ ++ Sbjct: 59 PEGGKQRIGTLHDQWTAEKKPFWKATSGSNMDSAWKCHCEAKWAERQIGSITHAEVQAWV 118 Query: 129 GGLTVGPWAKLAT--LRLLRSILDMAREDGRIHINPAQGVSSGRIPARERHR-YLSATEV 185 G + A + ++++ I MA D I NP G+ R+P R+ R YL+ T + Sbjct: 119 GSIIDKSGAPSVSRPYQIMQGICSMAVRDKLISSNPCDGIELPRLPKRKDRRIYLTITRL 178 Query: 186 AALAHA---CGDQGD----IVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEG 238 ALA+ C G+ ++ +L F GLRW E GL+ D+D A L+VR+ V Sbjct: 179 LALANEASNCRKLGEERRALILLLGFCGLRWGEAAGLQRRDLDFDAGILHVRRNLVYVNA 238 Query: 239 RIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHW- 297 + G PK R VP+PRIV+DALKP E R +E+ GG +R + R T W Sbjct: 239 KWAEGTPKNHER-RDVPMPRIVMDALKPICEQREHEERVFRDVRGGPIRKQSLARETGWW 297 Query: 298 NKALKKTGLA----PLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYS 353 L + G P+ HDLRHT ASLA +GA+++ +Q+ +GH ++T ++Y+DL+ Sbjct: 298 THTLTRLGWKRDDWPVP-HDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFD 356 Query: 354 DELDHVATNLD 364 +L VA LD Sbjct: 357 SDLMDVARLLD 367 >tr|C1A0A2|C1A0A2_RHOE4 Tax_Id=234621 SubName: Full=Putative integrase;[Rhodococcus erythropolis] Length = 375 Score = 162 bits (409), Expect = 9e-38 Identities = 111/354 (31%), Positives = 185/354 (52%), Gaps = 22/354 (6%) Query: 20 RYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFDPRLGRASLSAI 79 RY+VRY +P F T R+A A+ A + + GA GRA++ + Sbjct: 14 RYEVRY-----RTPDHQTTRKRGFKTKRDANAYAARVEVDKQTGAF-VQQSAGRATIGEL 67 Query: 80 WTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLTV--GPWA 137 ++ +Q + P + W+ + P++G PV I R VQQ++ ++V GP Sbjct: 68 GVEW-LGRQAHLKPSSARVVKSAWDNHVQPKWGQTPVGRIKRTHVQQWVADMSVDSGPVT 126 Query: 138 KLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARER--HRYLSATEVAALAHACGDQ 195 +L SILD A D + +NPA+GV ++P R+R YL+ ++ ALA G++ Sbjct: 127 ITRCFGVLASILDDAVADRLLVVNPARGV---KLPRRKRGEQTYLTMAQLQALAEQVGER 183 Query: 196 GDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPPKTRAAVRTVP 255 +V +L F GLR+ E GLRV +DL RR+ V + A V GR+ +G PK+ A RT+ Sbjct: 184 RGLVLLLGFGGLRFGEAAGLRVRHLDLLRRRVRVVENAVTVAGRVELGSPKSHAQ-RTIA 242 Query: 256 LPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHWNKALKK-----TGLAPLT 310 +PR+V +AL + E + + + GG + + + + W+ A+++ + Sbjct: 243 VPRLVTEALARQCEGKGRDDIVFPNVRGGHMTLPSGK--SWWSGAVERCQAGDPSFPQIG 300 Query: 311 IHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATNLD 364 +H LRHT ASL +GA+ + +Q +GH++ T+T + Y L++D+L +A LD Sbjct: 301 VHALRHTAASLMIAAGANPKAIQAQLGHASATLTMDRYGHLFADQLGDLADALD 354 >tr|C7MYH0|C7MYH0_SACVD Tax_Id=471857 SubName: Full=Site-specific recombinase XerD;[Saccharomonospora viridis] Length = 402 Score = 157 bits (397), Expect = 2e-36 Identities = 126/383 (32%), Positives = 186/383 (48%), Gaps = 42/383 (10%) Query: 11 KRTNSAGQ---ARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRF 67 K+ S G+ AR++V Y + S E ++T +ARA + + EAA+ + Sbjct: 20 KKAKSLGRRPPARWEVMYYDQTGKLRS---EVAAT-----KARAEQRRTELEAALSTDTY 71 Query: 68 -DPRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQ 126 DP + S + + ++ S+ + P TW Y + ++ R+G V + I +D+ Sbjct: 72 VDPTTAKVSFAEVADKWLESRHD-LRPSTWWKYRGLLDTHVNVRWGDVQLRAIRSEDIAA 130 Query: 127 FIGGLT---------VGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARERH 177 ++G L +GP R+L +LD ++ NPA+GV P E H Sbjct: 131 WLGSLLKSRTEGGSGLGPSQARHAFRVLSMVLDWC-VPAKLLRNPAEGVKLPVRPETE-H 188 Query: 178 RYLSATEVAALAHACGD--------------QGDIVTILAFTGLRWSELVGLRVGDIDLK 223 YLS +V LA+A GD ++ +LA+TGLRW E LRVG +DL Sbjct: 189 VYLSFEQVERLANAAGDLRTKYGRPTASASVNRALILLLAYTGLRWGEAAALRVGRVDLV 248 Query: 224 ARRLYVRQAAPDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNG 283 RR+ V ++ G GPPK+ RTV +P ++ LK I R E T+ G Sbjct: 249 KRRIRVVSTFYELNGVQHEGPPKS-GKHRTVAIPPSLVPELKQVIGGRGDHELVFTTARG 307 Query: 284 GFLRSNNWRRHTHWNKALKKTGL--APLTIHDLRHTYASLARKSGADLRYVQKTMGHSTP 341 LR+NNWR +N A+K L LT H LRHT ASLA +GAD++ +Q +GH+ Sbjct: 308 ASLRANNWRVR-EFNPAVKLAKLDGLGLTPHKLRHTAASLAIAAGADVKVLQHMLGHADA 366 Query: 342 TVTANIYSDLYSDELDHVATNLD 364 +T NIY L+ D LD VA LD Sbjct: 367 AMTLNIYGHLFPDRLDEVADTLD 389 >tr|Q2JDR1|Q2JDR1_FRASC Tax_Id=106370 SubName: Full=Phage integrase;[Frankia sp.] Length = 394 Score = 156 bits (394), Expect = 5e-36 Identities = 128/390 (32%), Positives = 197/390 (50%), Gaps = 36/390 (9%) Query: 9 IRKRTNSAGQARYQVRYLVRDPNSPSGWVETS-STFATMREARAFKADRDGEAAIGARRF 67 IR+R + RYQVRY P G T+ TFA EA + +G+ G Sbjct: 10 IRRRESG----RYQVRY-----PGPDGQQRTAPETFARKSEAERYLTLIEGQILRG-EWI 59 Query: 68 DPRLGRASLSAIWTQYSAS---KQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDV 124 DP G+ +L T Y+A ++P + P+T Y+ I+P G +P+ +++ + Sbjct: 60 DPERGKVTL----TDYAARWIVERPNLRPRTIGLYSGLLTRHITPYIGGIPIGKLTTPII 115 Query: 125 QQFI-----GGLTVGPWAKLATLRLLRSILDMA-REDGRIHINPAQGVSSGRIPARERHR 178 +++ G++VG AK RLLR++L A RED I NP + + + A ER Sbjct: 116 REWRTKLLESGVSVGTTAK--AYRLLRAVLMTAVREDELIRTNPCRIPGADQENAPERP- 172 Query: 179 YLSATEVAALAHACGDQ-GDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVE 237 L+ ++V ALA G + +V + F LRW E+ L+ D+D +++RQ+ ++ Sbjct: 173 VLTVSQVFALAEKLGGRYRALVLVTTFASLRWGEVAALQRRDLDTDDGIVHIRQSLVEIG 232 Query: 238 GR-IIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQA---ITSPNGGFLRSNNWRR 293 G+ +++GPPK+RA VRTV LP +++ L+ + + A T P GGFLR N+R+ Sbjct: 233 GQGVVLGPPKSRAGVRTVSLPAVILPWLRIHLAEYVADDPAAFVFTGPKGGFLRRGNFRK 292 Query: 294 HTHWNKALKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYS 353 W+ A+ G+ L HDLRHT +LA ++GA LR + MGH +P A IY S Sbjct: 293 LVGWSDAVAAIGMPNLHFHDLRHTGNTLASRTGASLRDLMTRMGHDSPR-AALIYQHA-S 350 Query: 354 DELDHVATNLDRLNDVAKDQANGQEPDTPK 383 E D A D L+ V Q P P+ Sbjct: 351 TEAD--AAIADALSAVLAAQQGSVPPPAPR 378 >tr|C6AJE5|C6AJE5_BIFAS Tax_Id=555970 SubName: Full=Phage-related integrase;[Bifidobacterium animalis subsp. lactis] Length = 366 Score = 155 bits (392), Expect = 8e-36 Identities = 105/356 (29%), Positives = 170/356 (47%), Gaps = 17/356 (4%) Query: 20 RYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFDPRLGRASLSAI 79 +++VRY +P G F +A A+ A+ A G ++ + Sbjct: 15 KWEVRY-----RTPGGRTTRKRGFLRKMDAEAWAAENVEIAKAKGTFITQSAGNTPVAEL 69 Query: 80 WTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLTVGPWAKL 139 W + +K+ P W + P++G V I +VQ+++ L G ++ Sbjct: 70 WQSWIETKRTRCKPSYMESLGGAWNKHVGPQWGARKVGSIRHDEVQEWVNKLA-GEYSAS 128 Query: 140 ATLR---LLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYLSATEVAALAHACGDQG 196 +R +L+ +L A ++ I NPA ++ R R+ H YL+A ++ ALA G + Sbjct: 129 VVIRARDMLKGLLKAAVKNRLIASNPADDITVPR-KKRKDHVYLTAEQLMALADEAGWRR 187 Query: 197 DIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPPKTRAAVRTVPL 256 V L TG+RW ELVGLRV D+D K RL + + A +V+G +++G PKT RT+ Sbjct: 188 PAVLALGTTGMRWGELVGLRVRDLDAKGHRLRIERNAVEVKGEVVIGTPKTYEK-RTITY 246 Query: 257 PRIVIDALKPRIENRSTKEQAITSPNGGFLR----SNNWRRHTHWNK--ALKKTGLAPLT 310 P I+ L + R E G LR N+ +W K AL +T Sbjct: 247 PAILEPMLVEMAQGRDGDEPLFVDQQGKMLRRTHGPNSPSSWFYWAKKRALGDVLARKMT 306 Query: 311 IHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATNLDRL 366 +HDLRHT ASL +GA+++ VQ+ +GH + +T + Y+DL+ +LD V +D + Sbjct: 307 VHDLRHTAASLLVSAGANVKVVQRQLGHESAAMTLDTYADLFDADLDVVRVEMDSI 362 >tr|C6A8T7|C6A8T7_BIFLB Tax_Id=580050 SubName: Full=Phage-related integrase;[Bifidobacterium animalis subsp. lactis] Length = 366 Score = 155 bits (392), Expect = 8e-36 Identities = 105/356 (29%), Positives = 170/356 (47%), Gaps = 17/356 (4%) Query: 20 RYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFDPRLGRASLSAI 79 +++VRY +P G F +A A+ A+ A G ++ + Sbjct: 15 KWEVRY-----RTPGGRTTRKRGFLRKMDAEAWAAENVEIAKAKGTFITQSAGNTPVAEL 69 Query: 80 WTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLTVGPWAKL 139 W + +K+ P W + P++G V I +VQ+++ L G ++ Sbjct: 70 WQSWIETKRTRCKPSYMESLGGAWNKHVGPQWGARKVGSIRHDEVQEWVNKLA-GEYSAS 128 Query: 140 ATLR---LLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYLSATEVAALAHACGDQG 196 +R +L+ +L A ++ I NPA ++ R R+ H YL+A ++ ALA G + Sbjct: 129 VVIRARDMLKGLLKAAVKNRLIASNPADDITVPR-KKRKDHVYLTAEQLMALADEAGWRR 187 Query: 197 DIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPPKTRAAVRTVPL 256 V L TG+RW ELVGLRV D+D K RL + + A +V+G +++G PKT RT+ Sbjct: 188 PAVLALGTTGMRWGELVGLRVRDLDAKGHRLRIERNAVEVKGEVVIGTPKTYEK-RTITY 246 Query: 257 PRIVIDALKPRIENRSTKEQAITSPNGGFLR----SNNWRRHTHWNK--ALKKTGLAPLT 310 P I+ L + R E G LR N+ +W K AL +T Sbjct: 247 PAILEPMLVEMAQGRDGDEPLFVDQQGKMLRRTHGPNSPSSWFYWAKKRALGDVLARKMT 306 Query: 311 IHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATNLDRL 366 +HDLRHT ASL +GA+++ VQ+ +GH + +T + Y+DL+ +LD V +D + Sbjct: 307 VHDLRHTAASLLVSAGANVKVVQRQLGHESAAMTLDTYADLFDADLDVVRVEMDSI 362 >tr|B8DSS2|B8DSS2_BIFA0 Tax_Id=442563 SubName: Full=Phage-related integrase;[Bifidobacterium animalis subsp. lactis] Length = 366 Score = 155 bits (392), Expect = 8e-36 Identities = 105/356 (29%), Positives = 170/356 (47%), Gaps = 17/356 (4%) Query: 20 RYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFDPRLGRASLSAI 79 +++VRY +P G F +A A+ A+ A G ++ + Sbjct: 15 KWEVRY-----RTPGGRTTRKRGFLRKMDAEAWAAENVEIAKAKGTFITQSAGNTPVAEL 69 Query: 80 WTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLTVGPWAKL 139 W + +K+ P W + P++G V I +VQ+++ L G ++ Sbjct: 70 WQSWIETKRTRCKPSYMESLGGAWNKHVGPQWGARKVGSIRHDEVQEWVNKLA-GEYSAS 128 Query: 140 ATLR---LLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYLSATEVAALAHACGDQG 196 +R +L+ +L A ++ I NPA ++ R R+ H YL+A ++ ALA G + Sbjct: 129 VVIRARDMLKGLLKAAVKNRLIASNPADDITVPR-KKRKDHVYLTAEQLMALADEAGWRR 187 Query: 197 DIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPPKTRAAVRTVPL 256 V L TG+RW ELVGLRV D+D K RL + + A +V+G +++G PKT RT+ Sbjct: 188 PAVLALGTTGMRWGELVGLRVRDLDAKGHRLRIERNAVEVKGEVVIGTPKTYEK-RTITY 246 Query: 257 PRIVIDALKPRIENRSTKEQAITSPNGGFLR----SNNWRRHTHWNK--ALKKTGLAPLT 310 P I+ L + R E G LR N+ +W K AL +T Sbjct: 247 PAILEPMLVEMAQGRDGDEPLFVDQQGKMLRRTHGPNSPSSWFYWAKKRALGDVLARKMT 306 Query: 311 IHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATNLDRL 366 +HDLRHT ASL +GA+++ VQ+ +GH + +T + Y+DL+ +LD V +D + Sbjct: 307 VHDLRHTAASLLVSAGANVKVVQRQLGHESAAMTLDTYADLFDADLDVVRVEMDSI 362 >tr|B2EB98|B2EB98_BIFAN Tax_Id=486409 SubName: Full=Phage-related integrase;[Bifidobacterium animalis subsp. lactis HN019] Length = 366 Score = 155 bits (392), Expect = 8e-36 Identities = 105/356 (29%), Positives = 170/356 (47%), Gaps = 17/356 (4%) Query: 20 RYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFDPRLGRASLSAI 79 +++VRY +P G F +A A+ A+ A G ++ + Sbjct: 15 KWEVRY-----RTPGGRTTRKRGFLRKMDAEAWAAENVEIAKAKGTFITQSAGNTPVAEL 69 Query: 80 WTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLTVGPWAKL 139 W + +K+ P W + P++G V I +VQ+++ L G ++ Sbjct: 70 WQSWIETKRTRCKPSYMESLGGAWNKHVGPQWGARKVGSIRHDEVQEWVNKLA-GEYSAS 128 Query: 140 ATLR---LLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYLSATEVAALAHACGDQG 196 +R +L+ +L A ++ I NPA ++ R R+ H YL+A ++ ALA G + Sbjct: 129 VVIRARDMLKGLLKAAVKNRLIASNPADDITVPR-KKRKDHVYLTAEQLMALADEAGWRR 187 Query: 197 DIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPPKTRAAVRTVPL 256 V L TG+RW ELVGLRV D+D K RL + + A +V+G +++G PKT RT+ Sbjct: 188 PAVLALGTTGMRWGELVGLRVRDLDAKGHRLRIERNAVEVKGEVVIGTPKTYEK-RTITY 246 Query: 257 PRIVIDALKPRIENRSTKEQAITSPNGGFLR----SNNWRRHTHWNK--ALKKTGLAPLT 310 P I+ L + R E G LR N+ +W K AL +T Sbjct: 247 PAILEPMLVEMAQGRDGDEPLFVDQQGKMLRRTHGPNSPSSWFYWAKKRALGDVLARKMT 306 Query: 311 IHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATNLDRL 366 +HDLRHT ASL +GA+++ VQ+ +GH + +T + Y+DL+ +LD V +D + Sbjct: 307 VHDLRHTAASLLVSAGANVKVVQRQLGHESAAMTLDTYADLFDADLDVVRVEMDSI 362 >tr|A1UHF4|A1UHF4_MYCSK Tax_Id=189918 SubName: Full=Phage integrase family protein;[Mycobacterium sp.] Length = 407 Score = 153 bits (386), Expect = 4e-35 Identities = 101/323 (31%), Positives = 168/323 (52%), Gaps = 24/323 (7%) Query: 68 DPRLGRASLSAI---WTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDV 124 DP+L + I W Q A++ +PKT +GY ++ + PR+ VP+ ++S +D+ Sbjct: 78 DPKLSGVTFGVIAERWIQTKATR----APKTVAGYRSLLDVVVLPRWRDVPLRDVSFEDL 133 Query: 125 QQFIGGLTVG-----------PWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPA 173 QQ++ GL+V P + +++ +L A + + NPA G+ R P Sbjct: 134 QQWVSGLSVNGSTRFEGRGLSPSRVIQAHQVVSQVLRYAVKAKHLPANPADGIELPRKPE 193 Query: 174 RERHRYLSATEVAALAHACGDQGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAA 233 E+ RYL+ ++ LA A G V +L + GLR+ E LRVGD++L +RR+ +R++ Sbjct: 194 VEQ-RYLTHEQLQRLAVASGRFRTFVLVLGYCGLRFGEAAALRVGDVNLSSRRIRIRRSV 252 Query: 234 PDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRR 293 V G+ +V P + RTVP+P+ + ++ + R E S GG+L R Sbjct: 253 TAVTGQGLVEGPTKNHSARTVPVPKFLAPLIETEVGGRVDDELLFPSRRGGYLTEGEVR- 311 Query: 294 HTHWNKALKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYS 353 ++ A G+ LT H+LRHT ASLA +GA+++ +Q +GH T +T + Y L+ Sbjct: 312 -WVFDAAAVAVGVTGLTPHELRHTCASLAIAAGANVKVLQTLLGHKTAMLTLDRYGHLFP 370 Query: 354 DELDHVATNLDRLNDVAKDQANG 376 D+L +A D +D A A+G Sbjct: 371 DDLGRIA---DAFDDAAGFTADG 390 >tr|C1YS76|C1YS76_NOCDA Tax_Id=446468 SubName: Full=Site-specific recombinase XerD;[Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 399 Score = 150 bits (380), Expect = 2e-34 Identities = 116/379 (30%), Positives = 181/379 (47%), Gaps = 36/379 (9%) Query: 11 KRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFDPR 70 K + R+ VRY PSG +++ F +A + + + G+ R +P Sbjct: 23 KASKRTPPGRWWVRYY-----DPSGKIKSGGVFQKKPDAEKKRTEIENSLHEGSYR-NPH 76 Query: 71 LGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFI-- 128 + +++ + ++ ++ + TW Y + + PR+G + + + +DV ++ Sbjct: 77 DAKVTVAEMAEKWLITRTD-IKRSTWWQYRAVLDNHVLPRWGDLRLSAVHAEDVAVWVAH 135 Query: 129 -------GGLTVGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYLS 181 GG +G +L +L RI NPA+GV + P+ H YL Sbjct: 136 LQKPRDEGGSNLGASQTRHAHVVLSMVLGWC-VPRRIPFNPAKGVPLPK-PSEAEHVYLD 193 Query: 182 ATEVAALAHAC-------GDQ-------GDIVTILAFTGLRWSELVGLRVGDIDLKARRL 227 +V ALA A G + +V +LA+TG+RWSE LRVG +DL RR+ Sbjct: 194 HAQVEALADASLTLRTKYGQELASARVSRALVLLLAYTGMRWSEAAALRVGRVDLDRRRV 253 Query: 228 YVRQAAPDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLR 287 V +V+GR++ PPK RTVP+PR ++ L+P ++ R T+ G LR Sbjct: 254 RVVVTFAEVDGRLVEQPPKN-GRFRTVPVPRSLVPELRPFVKGRPDDALVFTTRRGAPLR 312 Query: 288 SNNWRRHTHWNKALKKTGL--APLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTA 345 NWR + A+K GL LT H LRHT ASLA +GAD++ VQ +GH T T+T Sbjct: 313 IRNWRNR-EFALAVKVVGLDGMGLTPHKLRHTAASLAIAAGADVKVVQAMLGHKTATMTL 371 Query: 346 NIYSDLYSDELDHVATNLD 364 + Y L+ D LD VA +D Sbjct: 372 DRYGHLFPDRLDEVADAMD 390 >tr|Q5Z3B0|Q5Z3B0_NOCFA Tax_Id=37329 SubName: Full=Putative phage integrase;[Nocardia farcinica] Length = 394 Score = 141 bits (356), Expect = 1e-31 Identities = 111/361 (30%), Positives = 165/361 (45%), Gaps = 32/361 (8%) Query: 20 RYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFDPRLGRASLSAI 79 RY+VRY P G F +A F A + G P LGR ++ + Sbjct: 19 RYRVRY-----RKPGGKQTDKRGFRRKIDAERFAATVEVSKMSG-EYVAPSLGRITVGEL 72 Query: 80 WTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIG--GLTV---- 133 ++ KQ V+ + W + PR+G V V ++ V+ +I G TV Sbjct: 73 APKWLERKQVDVAESNYRTLESAWRTHVQPRWGTVAVADVELDAVETWIADLGRTVTDPN 132 Query: 134 ----------GPWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYLSAT 183 G + +L ILD A + R+ +NPA+GV + +RH YL+A Sbjct: 133 EPEKVIRKGSGATTIIRAYGVLAGILDTAVKSKRLRVNPARGVENLPKKVGKRHVYLTAD 192 Query: 184 EVAALAHACG-DQGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIV 242 +V LA G ++ +V LA+ G+RW E V LRVGDID RRL V A + V Sbjct: 193 DVQRLAAESGAERRALVLTLAYCGIRWGEAVALRVGDIDFLRRRLTVADNAVQLGVDHAV 252 Query: 243 GPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLR---SNNWRRHTHWNK 299 G K+R VR VP+P+ V+D L + R K R S W + Sbjct: 253 GHTKSRK-VRAVPVPQFVLDELSVQCRGRDRKALVFGDGVNYLPRPKSSGGW-----FAG 306 Query: 300 ALKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHV 359 A+K+ + +T HDLRHT ASLA + ++ + + +GH+ +VT +Y+DL+ +LD Sbjct: 307 AVKRARVQAITPHDLRHTCASLAVSANVNVLALARMLGHADASVTLRVYADLFDSDLDRA 366 Query: 360 A 360 A Sbjct: 367 A 367 >tr|Q6AFR5|Q6AFR5_LEIXX Tax_Id=59736 SubName: Full=Phage-related integrase;[Leifsonia xyli subsp. xyli] Length = 382 Score = 137 bits (345), Expect = 2e-30 Identities = 113/375 (30%), Positives = 178/375 (47%), Gaps = 31/375 (8%) Query: 20 RYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFDPRLGRASLSAI 79 RY+VRY D + F T +EA F A A G DP L R +++ + Sbjct: 15 RYRVRYRKPDKSQTD-----KRGFHTKKEAELFLASVTVSKATGDY-IDPALARVTVADL 68 Query: 80 WTQYSASKQP-AVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFI---------G 129 + A K+P + P ++ W + + P +GH + I +VQ ++ G Sbjct: 69 AETWLAGKRPPTLKPSSFKPLLTSWNVHVEPTWGHREIRSILPSEVQGWVTRLGQPVISG 128 Query: 130 GLTVGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARER---HRYLSATEVA 186 G L L +L ILDMA D RI NPA+ +++ +P + R YL+ ++ Sbjct: 129 GGDKSATVVLRALGVLAGILDMAIADRRISRNPARSLTN--LPRKSRKVGRAYLTHDQLQ 186 Query: 187 ALAHACGDQGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPPK 246 LA ++T L + GLRW E LRV +++ RRL++ + A V I VG PK Sbjct: 187 TLAEKSAHPALVLT-LGYCGLRWGEATALRVRNVNQLRRRLHIEENAVLVGSDIHVGTPK 245 Query: 247 TRAAVRTVPLPRIVIDALKPRIENRSTKEQAI----TSPNGGFLRSNNWRRHTHWNKALK 302 T R+VP P + L E + + T G + + ++L Sbjct: 246 TWEQ-RSVPFPAFLSPMLAELCEGKGPNDLVFGKGRTHMKRGDYITGWFATAVRRVQSLD 304 Query: 303 KTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATN 362 +T + +T HDLRHT ASLA +GA+++ VQK +GH++ ++T + Y+DL+ D+LD V+ Sbjct: 305 ET-MPRVTPHDLRHTAASLAVSAGANVKAVQKMLGHASASMTLDTYTDLFDDDLDSVSNR 363 Query: 363 LD---RLNDVAKDQA 374 ++ RL V K A Sbjct: 364 MEEAVRLASVGKTWA 378 >tr|C5CAV2|C5CAV2_MICLC Tax_Id=465515 SubName: Full=Site-specific recombinase, integrase family;[Micrococcus luteus] Length = 396 Score = 137 bits (345), Expect = 2e-30 Identities = 106/380 (27%), Positives = 166/380 (43%), Gaps = 38/380 (10%) Query: 9 IRKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGAR--- 65 I+ RTN AG+ Y+V + W+ + A + +A D + R Sbjct: 4 IQTRTNKAGRTTYRVGFYEAGRFQ---WLPALAREAGAQRVKAIVEDPRQGPTVARRILE 60 Query: 66 -RFDPRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDV 124 + D G +L+ + +Y + +P T +GY PR G +PVD I R+ V Sbjct: 61 AQVDSAPGMPTLAEFFPRYIEHRGLRCTPGTLAGYEAEAARTFLPRLGELPVDMIDRRTV 120 Query: 125 QQFIGGLTVGPWAK-------------------LATL---------RLLRSILDMAREDG 156 ++I P A+ LAT+ LL ++L +A ++G Sbjct: 121 AEWIRWQLQQPTARWRAAAARAAAATPPRPEPPLATVSPKTVRNAHALLSAVLGLAVQEG 180 Query: 157 RIHINPAQGVSSGRIPARERHRYLSATEVAALAHACGDQ-GDIVTILAFTGLRWSELVGL 215 + NPA+G E S E A A + ++ +L TG RW E L Sbjct: 181 ILPANPARGADLPDDDVEEERGIFSRAEWARFYAAISESYQPLLIVLLVTGARWGEATAL 240 Query: 216 RVGDIDLKARRLYVRQAAPDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKE 275 +V D+D+ A ++VR+A + ++G PKT RT+ LP ++ L+P R+ E Sbjct: 241 QVRDLDVAASVIHVRRAWKKGKEGAVLGVPKTARGRRTIMLPDWAVETLEPLAAGRAADE 300 Query: 276 QAITSPNGGFLRSNNWRRHTHWNKALKKTGLAP-LTIHDLRHTYASLARKSGADLRYVQK 334 +T+P GG + N+ HW AL G+A LT H LRHT+AS A G + VQ Sbjct: 301 FLLTAPGGGVIHRTNFVER-HWKPALAAAGIAKHLTPHSLRHTFASWALMDGVPAQVVQH 359 Query: 335 TMGHSTPTVTANIYSDLYSD 354 +GH + T+ +Y+ L D Sbjct: 360 RLGHESLQTTSRVYAHLLLD 379 >tr|B7GR09|B7GR09_BIFLI Tax_Id=391904 SubName: Full=Phage integrase family protein;[Bifidobacterium longum subsp. infantis] Length = 391 Score = 137 bits (344), Expect = 3e-30 Identities = 111/384 (28%), Positives = 171/384 (44%), Gaps = 24/384 (6%) Query: 9 IRKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFD 68 + + S G+ RY+VRY P G F +A + A+ A D Sbjct: 4 VTRYKTSKGENRYRVRY-----RKPDGTQTDKRGFRRKIDAENWAAEHVTIAKATNSYVD 58 Query: 69 PRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFI 128 P G+ + ++ Q+ K P T + W L R+ + I+R +VQ +I Sbjct: 59 PEDGKRRVGDLYEQWLKEKWPFWKETTRVNATEAWRLYCEERWADRRIGTITRAEVQAWI 118 Query: 129 GGL--TVGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARERHR-YLSATEV 185 + + G + + + I MA D I NP + V ++P R+ R YL+ + + Sbjct: 119 SDIIASAGAPSVRRPYQTMLGICRMAVRDKLILDNPCENVELPKLPRRKSRRVYLTISRL 178 Query: 186 AALAHACG-------DQGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEG 238 A A C ++ +V L F GLRW E L+ D+D L+V V Sbjct: 179 LAFADECSRGKHLGAERRALVLTLGFCGLRWGEAAALKARDLDFGRGVLHVGGNLVYVGA 238 Query: 239 RIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHW- 297 R + G PK + R VP+P IV++ALKP R E+ GG + + + T W Sbjct: 239 RWVEGTPKN-SEERDVPMPLIVMEALKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWW 297 Query: 298 NKALKKTGLAPL---TIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSD 354 AL + G T HDLRHT ASLA +GA+++ +Q+ +GH ++T ++Y+DL+ Sbjct: 298 YHALVRLGWPKEEWPTPHDLRHTAASLAVHAGANVKALQRMLGHKNASMTLDVYADLFDS 357 Query: 355 ELDHVATNLDRLNDVAKDQANGQE 378 +L VA RL D A G E Sbjct: 358 DLMDVA----RLLDAAVQVETGME 377 >tr|A4X0Z3|A4X0Z3_SALTO Tax_Id=369723 SubName: Full=Phage integrase family protein;[Salinispora tropica] Length = 395 Score = 135 bits (339), Expect = 1e-29 Identities = 118/366 (32%), Positives = 178/366 (48%), Gaps = 26/366 (7%) Query: 20 RYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARR--FDPRLGRASLS 77 RYQVR+L D G TFA EA + + + A RR DP G+ L Sbjct: 20 RYQVRHLAPDGTMRPG----DQTFARKTEAERYLTLIEAQMA---RREWIDPNRGKIRLQ 72 Query: 78 AIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQF-----IGGLT 132 + + +++P + P+T Y I+P G VP++ I V+++ G++ Sbjct: 73 D-YAERWITERPNLRPRTVHLYRWTLGKHITPHLGGVPLNRIDTPMVREWRSRLLADGVS 131 Query: 133 VGPWAKLATLRLLRSILDMA-REDGRIHINPAQGVSSGRIPARERHRYLSATEVAALAHA 191 + AK RLLR+IL A +ED I INP + V + + A ER L+ ++ ALA Sbjct: 132 LTMAAK--AYRLLRAILMTAVKEDELIRINPCRVVGADQENAAERP-VLTVPQIFALAER 188 Query: 192 CGDQ-GDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGR-IIVGPPKTRA 249 D+ ++ + F LRW E V L+ D+DL A + VRQA + G +I+GPPK+RA Sbjct: 189 MPDRFRALILVTTFGCLRWGEAVALQRQDVDLVAGTVRVRQAFVEHRGTGLILGPPKSRA 248 Query: 250 AVRTVPLPRIVIDALKPRIEN---RSTKEQAITSPNGGFLRSNNWRRHTHWNKALKKTGL 306 VRT+ LP+ + LK + + + + T NG L N+ + W +A+ G+ Sbjct: 249 GVRTIALPKAALPMLKQHVSSHVGEAPEAFVFTGENGRNLWRGNFNKLVKWPEAVAAVGV 308 Query: 307 APLTIHDLRHTYASLA-RKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATNLDR 365 L HDLRHT +LA R GA LR + MGH +P A IY + +A +D+ Sbjct: 309 PGLHFHDLRHTGNTLASRAPGASLRDIMARMGHDSPR-AALIYQHANREADQGIADAIDK 367 Query: 366 LNDVAK 371 A+ Sbjct: 368 AVKAAR 373 >tr|C4RQL8|C4RQL8_9ACTO Tax_Id=219305 SubName: Full=Integrase;[Micromonospora sp. ATCC 39149] Length = 395 Score = 130 bits (328), Expect = 2e-28 Identities = 112/362 (30%), Positives = 170/362 (46%), Gaps = 39/362 (10%) Query: 21 YQVRYLVRDPNSP--SGWVETSSTFATMREARAFKADRDGEAAIGARRFDPRLGRASLSA 78 Y++R LVR +G+ +S M + RA + G A + PR G+ +L+ Sbjct: 13 YRIRDLVRGKKVTIQTGYPTKTSAKNAMVQFRAEQLQ--GNALM------PRGGQITLAD 64 Query: 79 IWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLT--VGPW 136 ++ S + + P + + P GH+ +DE+ + QQ++ L VGPW Sbjct: 65 FVGEWWPSYEKTLKPTAVNSEGNRIRNHLLPILGHLTLDELDGQVTQQWVNDLEAGVGPW 124 Query: 137 AKLATLR--------------LLRSILDMAREDGRIHINPAQGVSSGRIPARE--RHRYL 180 + R LL +I A RI +NP SS +P RE ++L Sbjct: 125 PESTRGRRKPLAAKTISNCHGLLHTICGAAIAAKRIRLNPC---SSTMLPRREPKEMKFL 181 Query: 181 SATEVAALAHACGDQG-DIVTILAFTGLRWSELVGLRVGDIDLKARR--LYVRQAAPDVE 237 S E+ L A +V +L TGLRW E +GLR G +DL A R L V + ++ Sbjct: 182 SDPEIGRLITALPPHWRPLVMLLVATGLRWGEAIGLRAGRVDLLAARPRLTVVEQLQELA 241 Query: 238 --GRIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHT 295 G ++ PKT RTV V L P I + + E T+P GG +R+ N+RR Sbjct: 242 STGELVFQSPKTAKGRRTVSFTTKVALLLTPLIAGKKSDEVVFTAPKGGMVRTRNFRRI- 300 Query: 296 HWNKALKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDE 355 W KA ++ GL L IHDLRHT+A++ +G L + + +GHS+ VT +Y L +E Sbjct: 301 -WVKACEEAGLPGLRIHDLRHTHAAILISAGRPLSAISRRLGHSSIAVTDLLYGHL-REE 358 Query: 356 LD 357 +D Sbjct: 359 VD 360 >tr|Q859H7|Q859H7_9VIRU Tax_Id=219292 (intM)SubName: Full=Integrase;[Micromonospora phage pMLP1] Length = 392 Score = 130 bits (328), Expect = 2e-28 Identities = 112/362 (30%), Positives = 170/362 (46%), Gaps = 39/362 (10%) Query: 21 YQVRYLVRDPNSP--SGWVETSSTFATMREARAFKADRDGEAAIGARRFDPRLGRASLSA 78 Y++R LVR +G+ +S M + RA + G A + PR G+ +L+ Sbjct: 10 YRIRDLVRGKKVTIQTGYPTKTSAKNAMVQFRAEQLQ--GNALM------PRGGQITLAD 61 Query: 79 IWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLT--VGPW 136 ++ S + + P + + P GH+ +DE+ + QQ++ L VGPW Sbjct: 62 FVGEWWPSYEKTLKPTAVNSEGNRIRNHLLPILGHLTLDELDGQVTQQWVNDLEAGVGPW 121 Query: 137 AKLATLR--------------LLRSILDMAREDGRIHINPAQGVSSGRIPARE--RHRYL 180 + R LL +I A RI +NP SS +P RE ++L Sbjct: 122 PESTRGRRKPLAAKTISNCHGLLHTICGAAIAAKRIRLNPC---SSTMLPRREPKEMKFL 178 Query: 181 SATEVAALAHACGDQG-DIVTILAFTGLRWSELVGLRVGDIDLKARR--LYVRQAAPDVE 237 S E+ L A +V +L TGLRW E +GLR G +DL A R L V + ++ Sbjct: 179 SDPEIGRLITALPPHWRPLVMLLVATGLRWGEAIGLRAGRVDLLAARPRLTVVEQLQELA 238 Query: 238 --GRIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHT 295 G ++ PKT RTV V L P I + + E T+P GG +R+ N+RR Sbjct: 239 STGELVFQSPKTAKGRRTVSFTTKVALLLTPLIAGKKSDEVVFTAPKGGMVRTRNFRRI- 297 Query: 296 HWNKALKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDE 355 W KA ++ GL L IHDLRHT+A++ +G L + + +GHS+ VT +Y L +E Sbjct: 298 -WVKACEEAGLPGLRIHDLRHTHAAILISAGRPLSAISRRLGHSSIAVTDLLYGHL-REE 355 Query: 356 LD 357 +D Sbjct: 356 VD 357 >tr|C0W2C9|C0W2C9_9ACTO Tax_Id=525246 SubName: Full=Phage integrase;[Actinomyces urogenitalis DSM 15434] Length = 448 Score = 127 bits (320), Expect = 2e-27 Identities = 86/284 (30%), Positives = 136/284 (47%), Gaps = 10/284 (3%) Query: 13 TNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFDPRLG 72 T ++G+ RY+VRY +P F +A AF A + + GA G Sbjct: 8 TTASGERRYRVRY-----RTPERRQTDKRGFKRKADAMAFAATVEVSKSTGAY-VPASAG 61 Query: 73 RASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLT 132 R ++ + + ++ + PKT Q W++ + PR+G V V ++ R V ++ L+ Sbjct: 62 RVTVGELGRAWLRRREAVMRPKTHYADMQMWKVHVLPRWGGVAVGDVRRTAVASWVAELS 121 Query: 133 VGPWAKLAT---LRLLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYLSATEVAALA 189 G + +LR +LD A D +I +NPA+G+ RER YL A +++ L Sbjct: 122 AGGLGASGVGQAVGVLRGVLDDAVSDRQIVVNPARGLDLPEKVERERV-YLDAGQLSRLV 180 Query: 190 HACGDQGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPPKTRA 249 G+ G ++ L +TGLR+ E LRVG +D+ RR+ V + A DV G I+ G PKT Sbjct: 181 ACAGEAGGVLAFLGWTGLRFGEASALRVGCVDMMRRRVRVVRTASDVGGMIVEGEPKTVK 240 Query: 250 AVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRR 293 R+VP P + + + + TSP G LR N R+ Sbjct: 241 GRRSVPFPEFLAPMVGQAVAGKGPDGLVFTSPEGKQLRGGNVRK 284 Score = 65.1 bits (157), Expect = 1e-08 Identities = 30/57 (52%), Positives = 42/57 (73%) Query: 308 PLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATNLD 364 PLT+HDLRHT ASLA +GA+++ VQ +GH + +T + Y+DL+ D+LD VA LD Sbjct: 369 PLTLHDLRHTAASLAISAGANVKAVQAMLGHKSAAMTLDTYADLFPDDLDAVALALD 425 >tr|C0U7T3|C0U7T3_9ACTO Tax_Id=526225 SubName: Full=Site-specific recombinase XerC;[Geodermatophilus obscurus DSM 43160] Length = 367 Score = 125 bits (314), Expect = 9e-27 Identities = 87/250 (34%), Positives = 133/250 (53%), Gaps = 8/250 (3%) Query: 68 DPRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQF 127 DP+ R ++ + + A K + P + + YA + + PR+G+V + ++ DVQ + Sbjct: 52 DPKRARTTVGELADVWLAGKIN-LKPTSRARYADVLKTHVRPRWGNVALIRVTHGDVQAW 110 Query: 128 IGGLTVGPWAKLATLR---LLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYLSATE 184 + L+ A + + +L IL +A D R+ +NPA GV+ + + R RYL+A + Sbjct: 111 LSELSDRGLAGASVRKAQGVLSGILGLAVRDRRLAVNPALGVALPPLQEKRR-RYLTAGQ 169 Query: 185 VAALAHACGDQGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEG-RIIVG 243 + ALA A G V IL + GLRWSEL LRV DL RR+ V +A +V+G R++ G Sbjct: 170 LEALADAAGTGRVAVLILGYCGLRWSELAALRVRHFDLLRRRVLVEEAVTEVDGSRLVWG 229 Query: 244 PPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHWNKALKK 303 PKT R+VPLPR ++D L + R E A SP G LR+ N R ++ A + Sbjct: 230 TPKTHGR-RSVPLPRFLVDELARTVVTRPADELAFPSPQGAVLRNRN-ARSAWFDAAARA 287 Query: 304 TGLAPLTIHD 313 G LT H+ Sbjct: 288 IGEPGLTPHE 297 >tr|Q82H18|Q82H18_STRAW Tax_Id=33903 (int8)SubName: Full=Putative tyrosine-family recombinase/integrase;[Streptomyces avermitilis] Length = 379 Score = 123 bits (308), Expect = 4e-26 Identities = 114/372 (30%), Positives = 183/372 (49%), Gaps = 28/372 (7%) Query: 7 RGIRKRTNSAGQ---ARYQVRYLVRDPNSPSGWVETSS-TFATMREARAFKADRDGEAAI 62 +G R+ S Q R+QVRY RDP + G + + T+ T +A+ + + Sbjct: 5 KGRRRSFGSCRQLASGRWQVRY--RDPQT--GLLRPAEKTYETKTDAQVALTHIEADITR 60 Query: 63 GARRFDPRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRK 122 G + DP G + + T + ++ ++ +T L + P FG + +++ Sbjct: 61 G-QWADPDAGDVNFADYATAWLRDRK--LADRTRERNESVMRLHVVPVFGAGSIADVTTA 117 Query: 123 DVQQFIGGLT---VGPWAKLATLRLLRSILDMAREDGRIHINPAQ--GVSSGRIPARERH 177 V+ + G L VG + +LLR++++ A +D I NP + G S +P R Sbjct: 118 RVRSWRGKLLAAGVGEPTVVKAYQLLRALMNTAVDDELIRRNPCRIKGADSYDVPERP-- 175 Query: 178 RYLSATEVAALAHACGDQGDIVTILA-FTGLRWSELVGLRVGDIDLKARRLYVRQAAPDV 236 LS EV +A+A + ++ +LA FT LR+ EL LR DIDL R + VR+A ++ Sbjct: 176 -VLSVAEVFGVAYAIAPRYRLLVLLAAFTTLRFGELAALRRKDIDLNGRLVVVRRAQAEL 234 Query: 237 E-GRIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQ---AITSPNGGFLRSNNWR 292 + GR+ PK+ A +RTV P ++D + +++ + Q P GG LR +N+R Sbjct: 235 QNGRLFDKAPKSAAGLRTVSFPAELVDEISHHLKHYAADGQEGHLFVGPQGGQLRRSNFR 294 Query: 293 RHTHWNKALKKTGLAP-LTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDL 351 W KA K G++P L HDLRHT +LA +GA R + MGHS+ + A IY + Sbjct: 295 --DDWIKARKAAGVSPKLHFHDLRHTGNTLASTAGASTRELMTRMGHSS-SRAALIYQHM 351 Query: 352 YSDELDHVATNL 363 SD +A L Sbjct: 352 TSDRDRTIADRL 363 >tr|C0WJX9|C0WJX9_9CORY Tax_Id=525260 SubName: Full=Possible phage integrase;[Corynebacterium accolens ATCC 49725] Length = 303 Score = 121 bits (303), Expect = 2e-25 Identities = 80/282 (28%), Positives = 141/282 (50%), Gaps = 15/282 (5%) Query: 91 VSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLTVGPWAKLATLRLLRSILD 150 + PKT W + P++ V I +VQ ++ G+ +L ILD Sbjct: 15 LKPKTQHDMLAVWRNHVEPKWAARQVANIKPSEVQGWVSGMDRSASLVRQAHAVLAQILD 74 Query: 151 MAREDGRIHINPAQGVSSGRIPARERHR--YLSATEVAALAHACGDQGDIVTILAFTGLR 208 +A D I NPA+GV ++P ++ + YL+A ++ C ++V +L GLR Sbjct: 75 LAVMDRAIRENPARGV---KLPRKDPTKKVYLTAQQLGLFVDECTRYKELVWLLGTVGLR 131 Query: 209 WSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPRI 268 W E LRV D+++ R+ V + A V ++I+G PKT VR V +P V+ L P + Sbjct: 132 WGEAAALRVRDVNVLRNRISVERNAVTVGSQVIIGTPKTH-EVREVAVPATVMRMLAPVM 190 Query: 269 ENRSTKEQAITSPNGGFLRSNNWRRHTHW-----NKALKKTGLAP-LTIHDLRHTYASLA 322 + + E +G ++ H W N+ ++K P +T H LRH A L Sbjct: 191 DGKGPDELLWPRHDGTPMKPPT---HGKWYYNALNRCMEKYPSFPRVTPHGLRHVAAGLM 247 Query: 323 RKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATNLD 364 +GA+++ +Q+ +GHS+ +T ++Y+DL+ ++L+ V + ++ Sbjct: 248 VSAGANVKAIQRQLGHSSAAMTLDVYADLFDEDLEAVGSAVE 289 >tr|B0LS68|B0LS68_9ACTO Tax_Id=35758 (int1)SubName: Full=Int1;[Streptomyces ghanaensis] Length = 376 Score = 121 bits (303), Expect = 2e-25 Identities = 117/382 (30%), Positives = 184/382 (48%), Gaps = 25/382 (6%) Query: 7 RGIRKRTNSAGQ---ARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIG 63 RG R+ S Q R+QVRY RDP + T+AT +A+ + + G Sbjct: 5 RGKRRNFGSVRQLPSGRWQVRY--RDPETGQ-LRPAEKTYATKTDAQVALTHIESDIVRG 61 Query: 64 ARRFDPRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKD 123 + DP G + T + ++ ++ +T L I P FG V +++ Sbjct: 62 -QWSDPDAGAVNFGEYATAWLRDRK--LADRTRERNESVMRLHILPTFGAGSVADVTTAR 118 Query: 124 VQQFIGGLT---VGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYL 180 V+ + G L VG + +LLR++++ A +D I NP + + R ER L Sbjct: 119 VRGWRGKLLAAGVGEPTVVKAYQLLRALMNTAVDDELIRRNPCRIKGADRYDVPERP-VL 177 Query: 181 SATEVAALAHACGDQGDIVTILA-FTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVE-G 238 + EV A+A + + ++ +LA FT LR+ EL LR DID + + VR+A +++ G Sbjct: 178 TVAEVFAVADSIAPRYRLLVLLAAFTTLRFGELAALRRRDIDQEGLTVTVRRAQAELQDG 237 Query: 239 RIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQ---AITSPNGGFLRSNNWRRHT 295 R+ PK+ A VR+V P ++DA+ +E+ + + P GG LR +N+R Sbjct: 238 RLFDKAPKSAAGVRSVSFPAELLDAVAHHLEHFAAPGRDGHVFVGPQGGQLRRSNFR--D 295 Query: 296 HWNKALKKTGL-APLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSD 354 W KA + G+ A L HDLRHT +LA +GA R + MGHS+ + A IY + SD Sbjct: 296 DWVKAREAAGVTAELHFHDLRHTGNTLASTAGASTRELMTRMGHSS-SRAALIYQHMTSD 354 Query: 355 ELDHVATNLDRLNDVAKDQANG 376 +A DRL + +D G Sbjct: 355 RDRTIA---DRLGAMIRDGGGG 373 >tr|C4LJG5|C4LJG5_CORK4 Tax_Id=645127 (int8)SubName: Full=Putative phage-related integrase;[Corynebacterium kroppenstedtii] Length = 361 Score = 120 bits (301), Expect = 3e-25 Identities = 93/355 (26%), Positives = 165/355 (46%), Gaps = 17/355 (4%) Query: 11 KRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFDPR 70 K+ N+A R++V+Y P+ FAT +A + A+ + G R DP Sbjct: 5 KQYNTANGPRWRVQYY-----DPANGKRQKRGFATKWQAENWAAENTVDLTTGQWR-DPA 58 Query: 71 LGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGG 130 ++ + + +Q + P T A + P +G + + + ++Q ++ Sbjct: 59 GANITVETLSKTWWRGRQH-LKPSTLDRDASRLHGVVLPMWGKRKIGTLRKSEIQAWVSA 117 Query: 131 LTVGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARER--HRYLSATEVAAL 188 + + LL ILD+A +D + NPA+GV ++P + + YL+ T++ L Sbjct: 118 SPLSGSSIRHAHNLLAQILDVAVDDNYLKSNPARGV---KLPPKGKPVKVYLTPTQLERL 174 Query: 189 AHACGDQGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPPKTR 248 AH GD+ +V +L GLRW ELVGL+V D+D RL + ++ ++G+ PKT Sbjct: 175 AHHAGDKAVVVWVLGTVGLRWGELVGLKVEDVDELHSRLRINRSVIYIKGKPQETLPKTH 234 Query: 249 AAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLR----SNNWRRHTHWNKALKKT 304 RTV + V+ + + R +GG L+ + W + Sbjct: 235 ER-RTVSVSLPVMRMIHEQAAGRLPSAWLFPHTDGGPLKRADGTKGWFAAAVKKAQAEDP 293 Query: 305 GLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHV 359 +T H LRH A L +GA+++ VQ+ +GH++ +T + Y+DL+ ++LD V Sbjct: 294 SFPRITPHGLRHVAAGLLVSAGANVKVVQRQLGHASAVLTLDTYADLFEEDLDTV 348 >tr|Q6NK56|Q6NK56_CORDI Tax_Id=1717 SubName: Full=Putative phage integrase;[Corynebacterium diphtheriae] Length = 408 Score = 118 bits (296), Expect = 1e-24 Identities = 100/339 (29%), Positives = 159/339 (46%), Gaps = 28/339 (8%) Query: 38 ETSSTFATMREARAFKADRDGEAAIGARRFDPRLGRASLSAIWTQYSASKQPAVSPKTWS 97 E + TF T EA + A + A G ++ +LS +W + ASK +S KT Sbjct: 43 EATKTFETRDEAELWAARAEVGKADGTWITKDKVD-ITLSDLWEPWIASKGN-ISDKTKR 100 Query: 98 GYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLTV----------GPWAKLATLR---L 144 Y +W + I P++G P I R + +I L+ P ++ A + + Sbjct: 101 DYLSYWNVHIRPQWGQTPCAHIQRSVINAWIPTLSTMKGVPASQPPRPLSESAMRKVGLI 160 Query: 145 LRSILDMAREDGRIHINPAQGVSSGRIPARER--HRYLSATEVAALAHACGDQGD--IVT 200 + ILD+A E G IH NP + +G +P +++ RYL TEV L + ++ Sbjct: 161 IHGILDLAVELGVIHQNP---IRTGDLPKQKKSERRYLKITEVDELIRQAPTEQAKLLLR 217 Query: 201 ILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRIIVGPPKTRAAVRTVPLPRIV 260 +L TGLR E GL+V D+D RL +R+ D+ KTR R VP+ + Sbjct: 218 VLIMTGLRPGEAKGLKVKDLDPVRGRLMIRRDVDDLGHE---DSTKTRNH-RDVPIGGEI 273 Query: 261 IDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHWNKALKKTGLAPLTIHDLRHTYAS 320 + L + + I G ++ WR W TG+ L ++LRHT AS Sbjct: 274 LLLLDRYAQGKDPDSWLIPDERGKVWTTSRWR--VVWKNLCIWTGIGDLDTYELRHTAAS 331 Query: 321 LARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHV 359 +A +GAD++ VQ +GHS+ +T +IY+ L+ + LD + Sbjct: 332 IAIAAGADVKTVQLMLGHSSAAMTLDIYAHLWEEGLDAI 370 >tr|D1BBK2|D1BBK2_9MICO Tax_Id=446469 SubName: Full=Site-specific recombinase XerD;[Sanguibacter keddieii DSM 10542] Length = 370 Score = 117 bits (292), Expect = 3e-24 Identities = 106/353 (30%), Positives = 168/353 (47%), Gaps = 29/353 (8%) Query: 40 SSTFATMREARAFKADRDGEAAIGARRFDPRLGRASLSAIWTQYSASKQPAVSPKTWSGY 99 S TF T R A+A++A++ + + GA DP+ GR + + +Y A++ VS KT Sbjct: 24 SKTFDTKRSAQAWEAEQKAKLSGGAW-VDPKAGRTPVREVIDEYLATRPGIVSSKTL--L 80 Query: 100 AQHWEL-RISPRFGHVPVDEISRKDVQQFIGGLTVGPWAKLATLRLLRSILD-MAREDGR 157 +H L +++P G +PV ++R+DVQ +G +G ++++ R IL + Sbjct: 81 TEHLLLGKVTPALGRLPVSAVTREDVQTDLGVQALG--LATSSVKRYRGILSALFTYSVA 138 Query: 158 IHINPAQGVSSGRIPA----RERHRYLSAT--EVAALAHACGDQ---GDIVTILAFTGLR 208 + VS ++P+ ER T E+ +A AC +Q GDI L TGLR Sbjct: 139 RRLRETNPVSGTKLPSGAEGHERTEMAPYTLEELREVAAACMEQSPDGDITLFLGLTGLR 198 Query: 209 WSELVGLRVGDI-DLKARRLYVRQAAPDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPR 267 W E+ LRV D+ ++ R + V ++AP G I K R VPL V + R Sbjct: 199 WGEMAALRVKDVLEVPRRAIRVSRSAPT--GHAIRETTKG-GRDRFVPLVEDVWQIVARR 255 Query: 268 IENRSTKEQAITSPNGGFLRSNNWRRHTHWNKALKKTGLAPLTIHDLRHTYASLARKSGA 327 + R+ + +P+G NW+ W + + +HDLRHT A+L SG Sbjct: 256 MVGRAPDDLLFVNPSGRIWGGWNWKCGVSWAQHARGR-----RVHDLRHTAATLWLSSGV 310 Query: 328 DLRYVQKTMGHSTPTVTANIYSD-LYSDELDHVATNLDRLNDVAKDQANGQEP 379 + VQ +GHST T+T ++Y+ L + E D L +N+ A G P Sbjct: 311 PPKTVQAWLGHSTATMTLDLYAHYLPASEAD---AGLRLMNERLAGGARGDRP 360 >tr|D1ADD7|D1ADD7_THECU Tax_Id=471852 SubName: Full=Integrase family protein;[Thermomonospora curvata DSM 43183] Length = 451 Score = 116 bits (291), Expect = 4e-24 Identities = 112/417 (26%), Positives = 181/417 (43%), Gaps = 85/417 (20%) Query: 20 RYQVRYLVRDPNSPSGWVETS-STFATMREARAFKADRDGEAAIGARRFDPRLGRASL-- 76 RYQ RY P G + T+ STFAT +A + + + G DP + L Sbjct: 20 RYQARY-----PGPDGKMRTAPSTFATKGDADRYLTLVEAQILNGEWT-DPDRAKVKLGD 73 Query: 77 -SAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQF-----IGG 130 +A W + ++P + P+T Y + I+P G V + ++S ++++ G Sbjct: 74 YAAKWIE----QRPGLRPRTVELYERLLRRHIAPYLGGVALGKLSTPVIREWRMTLLSEG 129 Query: 131 LTVGPWAKLATLRLLRSILDMARED----------------------------------- 155 ++ AK RLLR++L A ED Sbjct: 130 VSASVTAK--AYRLLRAVLTTATEDDRIIPRNPCRIRGAGDEKPDERPVLTVPQVFELAD 187 Query: 156 --GRIHINPAQGVSSG------RIPARERHR-----YLSATEVAALAHACGDQGD----- 197 GR + + + SG ++P R + S + D+G+ Sbjct: 188 RIGRRPVGNVRKLPSGAYRLRYQLPDGSTMRAFPTTFTSKAAAEQMLSELADKGEANVRR 247 Query: 198 ------IVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVE-GRIIVGPPKTRAA 250 +V + F LRW E V L+ DIDL AR + VR+ +++ G +++GP K+RA Sbjct: 248 DDRFRALVLLATFASLRWGEAVALQRQDIDLAARTVTVRRQYLEMDSGDLVLGPTKSRAG 307 Query: 251 VRTVPLPRIVIDALKPRIENRSTKEQA---ITSPNGGFLRSNNWRRHTHWNKALKKTGLA 307 RTV P ++ A++ ++ + + A T NGG LR N+RR + W +A+ G+ Sbjct: 308 ARTVVFPAGIVPAIRDHLDRYTADDPAALVFTGANGGVLRRGNFRRASRWGEAVAALGVP 367 Query: 308 PLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATNLD 364 L HDLRHT ++A +SGA LR + + MGH + A IY S+ +A +LD Sbjct: 368 GLHFHDLRHTGNTIAARSGASLRDLMRRMGHDS-VRAALIYQHATSEADKAIAASLD 423 >tr|B9KXE0|B9KXE0_THERP Tax_Id=309801 SubName: Full=Transposase;[Thermomicrobium roseum] Length = 316 Score = 114 bits (285), Expect = 2e-23 Identities = 95/311 (30%), Positives = 147/311 (47%), Gaps = 22/311 (7%) Query: 87 KQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLTVGPWAKLA---TLR 143 ++ ++ P+TW+GY +RI P G +P+D++ + +Q F L + + T Sbjct: 5 RRTSLRPRTWAGYESIVRVRIIPALGRLPLDKVEPQVLQAFASQLLTQGLSVQSVQNTHP 64 Query: 144 LLRSILDMAREDGRIHINPAQGVSSGRIPARERHRYLSATEVAALAHACGDQ--GDIVTI 201 LL A + G + NP V R +R + R L+A EVA L C D G +VT+ Sbjct: 65 LLHRPFADAVKWGLLGRNPCDLVDLSRA-SRLQLRALTAPEVARLLATCADDPLGPLVTV 123 Query: 202 LAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGR-IIVGPPKTRAAVRTVPLPRIV 260 +GLR EL+ L+ GDID + V ++ V G+ ++V PPKT A+ R VPL + Sbjct: 124 AVLSGLRLRELLALQWGDIDWERSEPSVVRSLQRVRGQGLVVVPPKTAASRRRVPLSPLA 183 Query: 261 IDALKPRIENR-----------STKEQAITSPNGGFLRSNNWRRHTHWNKALKKTGLAPL 309 ++AL+ + ++ + + TS G L R H + L++ GL Sbjct: 184 LEALRRQRRHQVEWRLAAGPTWAEGDWVFTSVRGVPLDPAETTRRFH--RLLERAGLPHR 241 Query: 310 TIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATNLDRL--N 367 HDLRHT ASL G + V +GHST VT ++YS + A L +L N Sbjct: 242 RFHDLRHTTASLLLADGVHPKVVASILGHSTVQVTLDVYSRVTPGLARQAAERLQQLVAN 301 Query: 368 DVAKDQANGQE 378 +A +E Sbjct: 302 SIAHSALASRE 312 >tr|O55248|O55248_9VIRU Tax_Id=65388 (int)SubName: Full=Integrase;[Mycobacterium phage Ms6] Length = 372 Score = 114 bits (285), Expect = 2e-23 Identities = 101/361 (27%), Positives = 155/361 (42%), Gaps = 29/361 (8%) Query: 9 IRKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFD 68 +R+R G Y V Y S G + TF + A AF A D A A Sbjct: 4 VRERVRKDGTTAYLVSYRFGGRGSAQG----ALTFDNRKAADAFAAAVDAHGAARALEMH 59 Query: 69 -----PRLGRASLS-AIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRK 122 PR ++ L+ A W ++ V T Y Q+ I P G +P+ ++S + Sbjct: 60 GINPAPRGTKSELTVAEWIRHHIDHLTGVEQYTIDKYEQYLANDIEPNLGDIPLSKLSEE 119 Query: 123 DVQQFIGGLTV-----GPWAKLATLRLLRSILDMAREDG---RIHINPAQG--VSSGRIP 172 D+ +++ + G TLR L A + NPA G + G Sbjct: 120 DIARWVKVMETTGGRDGNGHAPKTLRNKYGFLSGALNAAVPRYLSTNPASGRRLPRGNAE 179 Query: 173 ARERHRYLSATEVAALAHACGDQGDI-VTILAFTGLRWSELVGLRVGDIDLKARRLYVRQ 231 + R L+ E L A + V + TGLRW E+ L+ +DL+ + VRQ Sbjct: 180 DDDEIRMLTHAEFDRLRDAVTPHWKLMVQFMVSTGLRWGEVSALQPRHVDLETSTIRVRQ 239 Query: 232 AAPDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNW 291 A ++GPPKT+ + RTV +P +++ L + E + +GG +R + Sbjct: 240 AWKYSSAGYVLGPPKTKRSRRTVDVPARLLERLD------LSNEFVFVNTDGGPVRYPGF 293 Query: 292 RRHTHWNKALKKTGLAPL-TIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSD 350 R WN A++K GL P T HDLRHTYAS G + V + +GH + +T + Y+D Sbjct: 294 LRRV-WNPAVEKAGLVPRPTPHDLRHTYASWQLTGGTPVTIVSRQLGHESIQITVDTYTD 352 Query: 351 L 351 + Sbjct: 353 V 353 >tr|B5U4N9|B5U4N9_9CAUD Tax_Id=563119 (40)SubName: Full=Gp40;[Mycobacterium phage Fruitloop] Length = 372 Score = 114 bits (285), Expect = 2e-23 Identities = 101/361 (27%), Positives = 155/361 (42%), Gaps = 29/361 (8%) Query: 9 IRKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFD 68 +R+R G Y V Y S G + TF + A AF A D A A Sbjct: 4 VRERVRKDGTTAYLVSYRFGGRGSAQG----ALTFDNRKAADAFAAAVDAHGAARALEMH 59 Query: 69 -----PRLGRASLS-AIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRK 122 PR ++ L+ A W ++ V T Y Q+ I P G +P+ ++S + Sbjct: 60 GINPTPRGTKSELTVAEWIRHHIDHLTGVEQYTIDKYEQYLANDIKPNLGDIPLSKLSEE 119 Query: 123 DVQQFIGGLTV-----GPWAKLATLRLLRSILDMAREDG---RIHINPAQG--VSSGRIP 172 D+ +++ + G TLR L A + NPA G + G Sbjct: 120 DIARWVKVMETTGGRDGNGHAPKTLRNKYGFLSGALNAAVPRYLSTNPASGRRLPRGNAE 179 Query: 173 ARERHRYLSATEVAALAHACGDQGDI-VTILAFTGLRWSELVGLRVGDIDLKARRLYVRQ 231 + R L+ E L A + V + TGLRW E+ L+ +DL+ + VRQ Sbjct: 180 DDDEIRMLTHAEFDRLRDAVTPHWKLMVQFMVSTGLRWGEVSALQPKHVDLETSTIRVRQ 239 Query: 232 AAPDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNW 291 A ++GPPKT+ + RTV +P +++ L + E + +GG +R + Sbjct: 240 AWKYSSAGYVLGPPKTKRSRRTVDVPARLLERLD------LSNEFVFVNTDGGPVRYPGF 293 Query: 292 RRHTHWNKALKKTGLAPL-TIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSD 350 R WN A++K GL P T HDLRHTYAS G + V + +GH + +T + Y+D Sbjct: 294 LRRV-WNPAVEKAGLVPRPTPHDLRHTYASWQLTGGTPVTIVSRQLGHESIQITVDTYTD 352 Query: 351 L 351 + Sbjct: 353 V 353 >tr|Q0RPW7|Q0RPW7_FRAAA Tax_Id=326424 SubName: Full=Integrase;[Frankia alni] Length = 405 Score = 112 bits (281), Expect = 6e-23 Identities = 86/283 (30%), Positives = 131/283 (46%), Gaps = 13/283 (4%) Query: 80 WTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLTVGPWAKL 139 W Y S V +T Y + + P G + + +S DV Q++ GL A Sbjct: 73 WATYWLSGLSGVRGRTAKDYERDLRNHVLPLLGGLELTAVSSTDVGQWVKGLQERGLAP- 131 Query: 140 ATLRLLRSILDMAREDGRIH----INPAQGVSSGRIP--ARERHRYLSATEVAALAHACG 193 T+R +L + + H + P + R+P + E +L+ E+ L A Sbjct: 132 KTIRNQHGLLSVLFQAAVDHEPQAMRPGNPCARTRLPEASGEEMHFLTPAELERLLAALP 191 Query: 194 DQ-GDIVTILAFTGLRWSELVGLRVGDIDLKAR--RLYVRQAAP-DVEGRIIVGPPKTRA 249 +VT LA TGLRW E GL ++DL VRQ+ +G + +GPPKTR Sbjct: 192 PHYRPLVTTLALTGLRWGEATGLTARNVDLLGTPGTTAVRQSLQRQADGSLQLGPPKTRT 251 Query: 250 AVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHWNKALKKTGLAP- 308 + RTV LP ++D L P + E T+ G +R +++ W A+ + GL P Sbjct: 252 SRRTVTLPAKLVDVLIPVWSGKEGDEMVFTTQRGSLVRHSHFYNRV-WRPAVLRAGLVPG 310 Query: 309 LTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDL 351 L IHDLRHT+A+ +G L +Q+ +GH + T T + Y L Sbjct: 311 LRIHDLRHTHAAWLISAGRPLPSIQRRLGHRSITTTIDRYGHL 353 >tr|C0W4G9|C0W4G9_9ACTO Tax_Id=525246 SubName: Full=Phage integrase family protein;[Actinomyces urogenitalis DSM 15434] Length = 437 Score = 112 bits (281), Expect = 6e-23 Identities = 110/378 (29%), Positives = 167/378 (44%), Gaps = 30/378 (7%) Query: 10 RKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKA--DRDGEAAIGARRF 67 + R +GQ + V++ +SP T F T+ A+ F DR G AA A R Sbjct: 30 KPRRLKSGQVVWDVQFRPTPGSSP-----TREVFDTLPAAKQFVTLIDRVGGAAARAARD 84 Query: 68 DPRLGRASLSAIWT---QYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDV 124 + S+ + T Q+ + +V+ T Y Q R+ P G +P D I+R V Sbjct: 85 MATMSGTSVPTLNTAIDQHLDELRASVTAGTIRRYQQIANTRLRPTLGDLPCDLITRPVV 144 Query: 125 QQFIG---------GLTVGPWAKLATLR----LLRSILDMAREDGRIHINPAQGVSSGRI 171 Q++ G T G TLR LL S+L+ G I N A+G+ R Sbjct: 145 TQWLAKQRETPVQRGRTKGSTPSYKTLRGAQALLSSVLEHQVRAGTIPTNVARGLKLPRD 204 Query: 172 PARERHRYLSATEVAALAHACGD-QGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVR 230 +L+ T+ A L D +V+ L GLR+ E L D+DL A + VR Sbjct: 205 GIVRDKVFLTPTQFATLLDCVPDAHKPLVSTLYGLGLRFGEATALTPADLDLDAAQPVVR 264 Query: 231 QAAPDVEGR--IIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRS 288 EG+ +G PKTR ++RTV +P +I L R + R K A+ PN + Sbjct: 265 VTKAWKEGKKGSYLGSPKTRRSIRTVTVPPSLIPIL--REQARKKKPGALLFPNAYGEQI 322 Query: 289 NNWRRHTH-WNKALKKTGLAPLT-IHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTAN 346 + H W A+ +GL P +HDLRH++AS +G L +Q+ +GH + T + Sbjct: 323 TSGAFHARVWQPAVAASGLDPAPRVHDLRHSHASALIAAGIPLPVIQRRLGHESIQTTVD 382 Query: 347 IYSDLYSDELDHVATNLD 364 +Y L + A+ +D Sbjct: 383 VYGHLAPEAYAGAASAID 400 >tr|A6W8N8|A6W8N8_KINRD Tax_Id=266940 SubName: Full=Phage integrase family protein;[Kineococcus radiotolerans] Length = 402 Score = 111 bits (278), Expect = 1e-22 Identities = 108/373 (28%), Positives = 164/373 (43%), Gaps = 29/373 (7%) Query: 6 PRGIRKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGE------ 59 P I +R N+ G Y+VR + D + P V T + + F D E Sbjct: 10 PPRIEERKNTDGSISYRVRVRLPDLSKP---VVLGKPAPTKQVPKVFDTWADAEHFRQLI 66 Query: 60 AAIGARR----FDPRLGRAS-----LSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPR 110 +IG +R D + A A W + V+ T Y Q + I P Sbjct: 67 RSIGLQRAVELVDAKTPAAEPVSRVTVASWLTHHVEHLTGVTEGTRRDYLQMIAISIGPA 126 Query: 111 FGHVPVDEISRKDVQQFIGGLTV-GPWAKLATLRLLRSILDMAREDGRIHI--NPAQGVS 167 G++P+ +SR DV ++ + G K R + R G +H+ N A+G+ Sbjct: 127 LGNIPLAVLSRDDVTGWVNEMERRGLSGKTIKNRHAFLSSGLTRAVG-VHLPTNVAKGIR 185 Query: 168 SGRIPARERHR-YLSATEVAALAHACGDQG-DIVTILAFTGLRWSELVGLRVGDIDLKAR 225 R A+ R +L+ E AL A G ++ ++A TG+R E L+VGD+DL R Sbjct: 186 LPRQDAKTREPVFLTPDEYRALELAMHPIGRPLLLLMAGTGMRIGEATALQVGDVDLTGR 245 Query: 226 RLYVR--QAAPDVEGRII-VGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPN 282 VR +A + +GPPK+R R++ L V D L R KE +T+ Sbjct: 246 DPVVRVVRAWKHTDNNTQELGPPKSRKGKRSIALSDAVADYLADLTAGRGPKEWVVTTSR 305 Query: 283 GGFLRSNNWRRHTHWNKALKKTGLAPL-TIHDLRHTYASLARKSGADLRYVQKTMGHSTP 341 G R+N W R +W+ A+K++G+ T HD+RH++AS G L +Q +GH Sbjct: 306 GDAWRANYW-REKYWHDAVKRSGIGKSPTPHDIRHSHASWLIAQGVVLPVIQARLGHEKI 364 Query: 342 TVTANIYSDLYSD 354 T T + Y L SD Sbjct: 365 TTTVDTYGHLSSD 377 >tr|A3Q4Z2|A3Q4Z2_MYCSJ Tax_Id=164757 SubName: Full=Phage integrase family protein;[Mycobacterium sp.] Length = 424 Score = 110 bits (274), Expect = 4e-22 Identities = 105/366 (28%), Positives = 169/366 (46%), Gaps = 33/366 (9%) Query: 19 ARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFDPRLGRASLSA 78 +R++VR++ + E + +F +A+A+ + G DPR + + Sbjct: 58 SRWRVRWV------DASGAERTKSFQRKPDAQAYLNGLTADVQRG-EYVDPRKSAETFGS 110 Query: 79 IWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFIGGLTVGPWAK 138 + Q+ A+KQ PKT +GY + + P++ V + I+ + ++G L+V + Sbjct: 111 VAEQWFATKQHR-KPKTVAGYRSLLDTVVLPKWESVQLKRINYESYSTWLGALSVDGGQR 169 Query: 139 LATL---------RLLRSILDMAREDGRIHINPAQGVSSGR-IPA---RERHRYLSATEV 185 L +L+ ++L A+ G++ N A + +P RER RYL+ E+ Sbjct: 170 GTGLSASRITQAHQLVGAVLKYAQRTGKVAKNVAFEIKRDEDLPEQGERER-RYLTHAEL 228 Query: 186 AALAHACGDQGDIVTILAFTGLRWSELVGLR---VGDIDLKARRLYVRQAAPDVEGRIIV 242 LA A + +L + GLR+ E V LR VGD R L VR +A V G+ IV Sbjct: 229 LMLAKAADRFETLTLVLGYCGLRFGEAVALRRRHVGD-----RMLTVRSSATAVTGKGIV 283 Query: 243 GPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHWNKALK 302 R VP+P V LK + S GGFL +R ++ A Sbjct: 284 ESTTKTKRDRHVPVPEPVWKKLKAELP-ADPNALVFPSRKGGFLPLGEYR--WAFDNACA 340 Query: 303 KTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDHVATN 362 G+ L H LRHT ASLA +GA+++ VQ+ +GH+T +T + Y L +D+L VA Sbjct: 341 DIGIDGLVPHGLRHTTASLAISAGANVKVVQRLLGHATAAMTLDRYGHLLNDDLSGVADA 400 Query: 363 LDRLND 368 L + D Sbjct: 401 LGKAID 406 >tr|C0UDI1|C0UDI1_9ACTO Tax_Id=526225 SubName: Full=Site-specific recombinase XerD;[Geodermatophilus obscurus DSM 43160] Length = 326 Score = 110 bits (274), Expect = 4e-22 Identities = 89/306 (29%), Positives = 144/306 (47%), Gaps = 15/306 (4%) Query: 68 DPRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQF 127 DP+ G+ + ++ A + P T + + + P GH P+ ++ +VQ + Sbjct: 8 DPKAGKVTFQDYAEEWRAGQ--VHRPTTAAHHETMLRRHVYPHLGHRPLADVRPSEVQAW 65 Query: 128 IGGL--TVGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARERHRY--LSAT 183 + L T+ P R++ I A D R+ +P +G ++P R+ R LS Sbjct: 66 VRRLSETLAPSTVGVVHRIVAGIFKAAVRDRRVATSPCEGT---KLPKRQPKRVEPLSTE 122 Query: 184 EVAALAHACGDQGDIVTILAF-TGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRI-I 241 VAAL A D+ + +LA TG+R E+ GL V I+ R++ V + V GR Sbjct: 123 AVAALIAAAPDRYRTLFVLAAGTGMRQGEVFGLTVDRINFLRRQVTVDRQLVLVPGREPF 182 Query: 242 VGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAI--TSPNGGFLRSNNWRRHTHWNK 299 + PPKT A+ RT+PLP++V+DAL + T+ G +R + W Sbjct: 183 LAPPKTAASHRTIPLPQVVVDALAAHLAAFPAGPDGFVFTTEAGKPIRRTAFSAQV-WQP 241 Query: 300 ALKKTGLAPL-TIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLYSDELDH 358 A + GL T H LRH YASL + G ++ VQ +GH++ + T + YS L+ D + Sbjct: 242 AARAAGLPSAETFHGLRHHYASLLIRHGESVKTVQARLGHASASETLDTYSHLWPDSEER 301 Query: 359 VATNLD 364 +D Sbjct: 302 TREAVD 307 >tr|A1SE70|A1SE70_NOCSJ Tax_Id=196162 SubName: Full=Phage integrase family protein;[Nocardioides sp.] Length = 361 Score = 108 bits (271), Expect = 9e-22 Identities = 100/353 (28%), Positives = 159/353 (45%), Gaps = 30/353 (8%) Query: 9 IRKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGARRFD 68 I+KR N +ARY+ G E + FA +A+ + D + + D Sbjct: 4 IKKRDNGKWRARYR----------DEGGKEHARHFARKTDAQDW-LDEETAGLVRGDWID 52 Query: 69 PRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQFI 128 PR G+ + + + +SA + A + A S FG++ + +I R V+ ++ Sbjct: 53 PRHGKITFAQWFADWSARQVWADGTLEAAEQAA-----ASVTFGNIAMRKILRSHVEAWV 107 Query: 129 GGLTVGPWAKLATLRL--LRSILDMAREDGRIHINPAQGVSSGRIPARERHRYLSATE-V 185 ++ A +R + A D I P+ GV+ +IP E + E V Sbjct: 108 KSMSTTLAASTTRMRYNYVHMAFRAAVRDKVIREAPSDGVALPKIPRAEVTMLIPTPEQV 167 Query: 186 AALAHACGDQGDI--VTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAPDVEGRII-- 241 AA +C D + + + A+ GLR E GL+VGD+D R + VR+ V+G+ + Sbjct: 168 AAARVSCPDSAFVGFIAVCAYAGLRLGEAAGLQVGDVDFLRREIRVRR---QVQGQTVAT 224 Query: 242 --VGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRHTHWNK 299 V PPK +A RTV + ++ L + + T G L + N H W + Sbjct: 225 AKVVPPKAGSA-RTVYVDDSLVKLLSTHVRDYGTWGDEGWLFGMGTLLNRNSAGHL-WRQ 282 Query: 300 ALKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSDLY 352 + GL T+HDLRH YAS +G D+ VQ +GHS+PT+T N YS L+ Sbjct: 283 TRQGVGLDAFTLHDLRHFYASGLIAAGCDVVTVQHALGHSSPTITLNTYSHLW 335 >tr|C0FLX6|C0FLX6_9CLOT Tax_Id=411486 SubName: Full=Putative uncharacterized protein;[Clostridium sp. M62/1] Length = 334 Score = 108 bits (270), Expect = 1e-21 Identities = 95/321 (29%), Positives = 153/321 (47%), Gaps = 45/321 (14%) Query: 58 GEAAIGARRFDPRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVD 117 GE G RR + SL IW AS + +V P T++ Y E I G++ Sbjct: 10 GEEYGGGRR---EMTVKSLCEIW---EASVRSSVKPSTYACYVTLIEKHIQAELGNMSAG 63 Query: 118 EISRKDVQQFIG-----GLTVGPWAKLATLRLLRSILDMAREDGRIHINPAQGVS----- 167 +++ + + +F+ GL+ G L L LL+ I+ +E G I PA+ +S Sbjct: 64 KLTNRVILEFVRKKQRQGLSAGTVRLL--LFLLKRIVQAGKERG---IWPAEELSFRQPR 118 Query: 168 --SGRIPARERHRYLSATEVAALAHACGDQGDIVTILAFTGLRWSELVGLRVGDIDLKAR 225 SG E + + D G ++++ TG+R EL G++ GDIDLKA Sbjct: 119 QLSGGKNIMEWEDFHKILSYLLHSRRSFDLGLLISLS--TGIRVGELCGIKWGDIDLKAG 176 Query: 226 RLYVRQAAP-----DVEGR------------IIVGPPKTRAAVRTVPLPRIVIDALKPRI 268 L VR+ D+E + I +GPPKT +VR +PLP+ +++ L+ R Sbjct: 177 ILRVRRTVSRIRNVDIEEQQKPFPAKQSRTIIQIGPPKTETSVRDIPLPQFLVERLRERQ 236 Query: 269 ENRSTKEQA-ITSPNGGFLRSNNWRRHTHWNKALKKTGLAPLTIHDLRHTYASLARKSGA 327 E R QA + + F+ +R + LKK G+ P+ IH LRH++AS ++G Sbjct: 237 EERRFSSQAYVLTGRAQFMEPRGVQRR--FKNLLKKCGIEPVNIHSLRHSFASKWIENGF 294 Query: 328 DLRYVQKTMGHSTPTVTANIY 348 D + + + +GHS+ +T +IY Sbjct: 295 DSKALSEILGHSSVKITMDIY 315 >tr|B0PGN2|B0PGN2_9FIRM Tax_Id=445972 SubName: Full=Putative uncharacterized protein;[Anaerotruncus colihominis DSM 17241] Length = 526 Score = 107 bits (268), Expect = 2e-21 Identities = 99/394 (25%), Positives = 171/394 (43%), Gaps = 32/394 (8%) Query: 9 IRKRTNSAGQARYQVRYLVRDPNSPSGWVETSSTFATMREARAFKADRDGEAAIGAR--R 66 +R+R + + R + Y G T + A + K + E G++ + Sbjct: 12 VRQRNDGRWEGRVVIGY------DEKGLPRTKNVLAKTKRECQEKLKQLRETMTGSKTEK 65 Query: 67 FDPRLGRASLSAIWTQYSASKQPAVSPKTWSGYAQHWELRISPRFGHVPVDEISRKDVQQ 126 P + W Y +P + P T + Y I P G +P++++++KD+QQ Sbjct: 66 VRPEMPFGEWLDFW--YQNYVKPQIRPTTQANYEAKIYQHIIPELGKIPLNQLAQKDLQQ 123 Query: 127 FIGGLTV----------GPWAKLATLRLL----RSILDMAREDGRIHINPAQGVSSGRIP 172 F + G + +R L RS L+ A ++G I NPA G Sbjct: 124 FYARMKTAGRLIRTEQFGKGLSDSMVRGLHAACRSALEKAVQEGLIRTNPAVGCKLPPKR 183 Query: 173 ARERHRYLSATEVAALAHACGDQG--DIVTILAFTGLRWSELVGLRVGDIDLKARRLYVR 230 RE + L E+ +G ++ + TGLR EL+ L+ D+D + L V Sbjct: 184 GREM-QVLGREELQRFLIQAQAEGYFELFLLDLCTGLRRGELLALQWDDLDFRTGALTVN 242 Query: 231 QAAPDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNN 290 + +V+GR+ V PKTRA++R + LP V++ L+ E ++ SP + Sbjct: 243 KQVYEVKGRLQVSVPKTRASIRRLVLPPGVVEVLRAYRETVDSRWM-FPSPVKEDVPMTP 301 Query: 291 WRRHTHWNKALKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYSD 350 L++ G + HDLRHT+A+L+ ++G D++ + +GH + T +IY+ Sbjct: 302 GAVRRRLQIILERAGCKRIRFHDLRHTFATLSLENGMDVKTLSAMLGHVSAATTLDIYTH 361 Query: 351 LYSDELDHVATNLDR--LNDVAKDQANGQEPDTP 382 + D A +DR N+V ++ A QE P Sbjct: 362 VTGDMQSEAAAKIDRGLGNEVREESA--QEDQGP 393 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.318 0.133 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 2,970,885,107 Number of extensions: 124881243 Number of successful extensions: 301983 Number of sequences better than 10.0: 8234 Number of HSP's gapped: 298339 Number of HSP's successfully gapped: 8454 Length of query: 385 Length of database: 3,846,993,858 Length adjustment: 139 Effective length of query: 246 Effective length of database: 2,279,740,641 Effective search space: 560816197686 Effective search space used: 560816197686 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 81 (35.8 bits)