BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_5228 (329 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HKD6|B2HKD6_MYCMM Tax_Id=216594 (dnaQ)SubName: Full=DNA pol... 642 0.0 tr|A0PVE9|A0PVE9_MYCUA Tax_Id=362242 (dnaQ)SubName: Full=DNA pol... 640 0.0 tr|Q744M8|Q744M8_MYCPA Tax_Id=1770 (dnaQ)SubName: Full=DnaQ;[Myc... 527 e-148 tr|A0Q9T8|A0Q9T8_MYCA1 Tax_Id=243243 SubName: Full=DNA polymeras... 525 e-147 tr|Q7TVV5|Q7TVV5_MYCBO Tax_Id=1765 (dnaQ)SubName: Full=PUTATIVE ... 515 e-144 tr|C1AIG5|C1AIG5_MYCBT Tax_Id=561275 (dnaQ)SubName: Full=DNA pol... 515 e-144 tr|A1KQ43|A1KQ43_MYCBP Tax_Id=410289 (dnaQ)SubName: Full=Putativ... 515 e-144 tr|Q7D508|Q7D508_MYCTU Tax_Id=1773 (dnaQ)SubName: Full=DNA polym... 511 e-143 tr|A5WTS9|A5WTS9_MYCTF Tax_Id=336982 SubName: Full=DNA polymeras... 511 e-143 tr|A4KMH8|A4KMH8_MYCTU Tax_Id=395095 SubName: Full=DNA polymeras... 511 e-143 tr|A2VM93|A2VM93_MYCTU Tax_Id=348776 SubName: Full=DNA polymeras... 510 e-143 tr|O69678|O69678_MYCTU Tax_Id=1773 (dnaQ)SubName: Full=PROBABLE ... 509 e-142 tr|A5U937|A5U937_MYCTA Tax_Id=419947 (dnaQ)SubName: Full=DNA pol... 509 e-142 tr|C6DNF1|C6DNF1_MYCTK Tax_Id=478434 SubName: Full=DNA polymeras... 508 e-142 tr|A4T616|A4T616_MYCGI Tax_Id=350054 SubName: Full=DNA polymeras... 463 e-128 tr|A1TGI5|A1TGI5_MYCVP Tax_Id=350058 SubName: Full=DNA polymeras... 462 e-128 tr|A0R5Q6|A0R5Q6_MYCS2 Tax_Id=246196 SubName: Full=DNA polymeras... 461 e-128 tr|Q1B280|Q1B280_MYCSS Tax_Id=164756 SubName: Full=DNA polymeras... 454 e-126 tr|A1UMX0|A1UMX0_MYCSK Tax_Id=189918 SubName: Full=DNA polymeras... 454 e-126 tr|A3Q7A4|A3Q7A4_MYCSJ Tax_Id=164757 SubName: Full=DNA polymeras... 453 e-125 tr|B1MFM8|B1MFM8_MYCA9 Tax_Id=561007 SubName: Full=DNA polymeras... 426 e-117 tr|Q0SFP4|Q0SFP4_RHOSR Tax_Id=101510 SubName: Full=Probable DNA ... 215 5e-54 tr|C9NHS4|C9NHS4_9ACTO Tax_Id=591167 SubName: Full=DNA polymeras... 212 6e-53 tr|B5GGH4|B5GGH4_9ACTO Tax_Id=465543 SubName: Full=DNA polymeras... 207 1e-51 tr|D1BFD5|D1BFD5_9MICO Tax_Id=446469 SubName: Full=DNA polymeras... 206 2e-51 tr|D1AAU1|D1AAU1_THECU Tax_Id=471852 SubName: Full=DNA polymeras... 204 9e-51 tr|C9ZG17|C9ZG17_STRSW Tax_Id=680198 SubName: Full=Putative DNA ... 204 2e-50 tr|B1W1U8|B1W1U8_STRGG Tax_Id=455632 SubName: Full=Putative DNA ... 201 8e-50 tr|A8LH88|A8LH88_FRASN Tax_Id=298653 SubName: Full=Exonuclease R... 200 2e-49 tr|Q829H2|Q829H2_STRAW Tax_Id=33903 (dnaQ1)SubName: Full=Putativ... 199 3e-49 tr|B4VE41|B4VE41_9ACTO Tax_Id=465541 SubName: Full=DNA polymeras... 196 2e-48 tr|D0L8D9|D0L8D9_GORB4 Tax_Id=526226 SubName: Full=Exonuclease R... 196 3e-48 tr|Q9RJ41|Q9RJ41_STRCO Tax_Id=1902 SubName: Full=Putative DNA po... 196 4e-48 tr|C9YZT9|C9YZT9_STRSW Tax_Id=680198 SubName: Full=Putative exon... 195 7e-48 tr|Q1B0K2|Q1B0K2_MYCSS Tax_Id=164756 SubName: Full=DNA polymeras... 177 2e-42 tr|A1UQE8|A1UQE8_MYCSK Tax_Id=189918 SubName: Full=DNA polymeras... 177 2e-42 tr|A6WGD9|A6WGD9_KINRD Tax_Id=266940 SubName: Full=DNA polymeras... 150 2e-34 tr|C2GJE7|C2GJE7_9CORY Tax_Id=548478 SubName: Full=DNA polymeras... 124 1e-26 tr|C0VRK8|C0VRK8_9CORY Tax_Id=548477 SubName: Full=DNA polymeras... 124 1e-26 tr|C0WHW0|C0WHW0_9CORY Tax_Id=525260 SubName: Full=DNA polymeras... 120 3e-25 tr|Q6NJX7|Q6NJX7_CORDI Tax_Id=1717 SubName: Full=Putative helica... 115 9e-24 tr|A0K225|A0K225_ARTS2 Tax_Id=290399 SubName: Full=DNA polymeras... 109 4e-22 tr|C2CS90|C2CS90_CORST Tax_Id=525268 SubName: Full=DNA polymeras... 108 7e-22 tr|C8NXJ5|C8NXJ5_9CORY Tax_Id=585529 SubName: Full=DNA polymeras... 107 2e-21 tr|A4AIB8|A4AIB8_9ACTN Tax_Id=312284 SubName: Full=DNA polymeras... 107 3e-21 tr|B5I2U5|B5I2U5_9ACTO Tax_Id=463191 SubName: Full=DNA polymeras... 102 5e-20 tr|C4DV08|C4DV08_9ACTO Tax_Id=446470 SubName: Full=DNA polymeras... 99 5e-19 tr|C1WXR8|C1WXR8_9ACTO Tax_Id=479435 SubName: Full=DNA polymeras... 96 5e-18 tr|C7Q2F7|C7Q2F7_CATAD Tax_Id=479433 SubName: Full=Exonuclease R... 95 1e-17 tr|A1SNC5|A1SNC5_NOCSJ Tax_Id=196162 SubName: Full=Exonuclease, ... 94 3e-17 >tr|B2HKD6|B2HKD6_MYCMM Tax_Id=216594 (dnaQ)SubName: Full=DNA polymerase III (Epsilon subunit) DnaQ;[Mycobacterium marinum] Length = 329 Score = 642 bits (1657), Expect = 0.0 Identities = 316/329 (96%), Positives = 317/329 (96%) Query: 1 VSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 +SQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD Sbjct: 1 MSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 Query: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP 120 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSF P Sbjct: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFLAAEAELADAELP 120 Query: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE Sbjct: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 Query: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA Sbjct: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 Query: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF Sbjct: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 Query: 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 MDRVGCVLGGTSAEKFTDHTLVEEQFALF Sbjct: 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 >tr|A0PVE9|A0PVE9_MYCUA Tax_Id=362242 (dnaQ)SubName: Full=DNA polymerase III (Epsilon subunit) DnaQ;[Mycobacterium ulcerans] Length = 329 Score = 640 bits (1650), Expect = 0.0 Identities = 315/329 (95%), Positives = 316/329 (96%) Query: 1 VSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 +SQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPG D Sbjct: 1 MSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGGD 60 Query: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP 120 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSF P Sbjct: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFLAAEAELTDAELP 120 Query: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE Sbjct: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 Query: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA Sbjct: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 Query: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF Sbjct: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 Query: 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 MDRVGCVLGGTSAEKFTDHTLVEEQFALF Sbjct: 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 >tr|Q744M8|Q744M8_MYCPA Tax_Id=1770 (dnaQ)SubName: Full=DnaQ;[Mycobacterium paratuberculosis] Length = 329 Score = 527 bits (1358), Expect = e-148 Identities = 259/325 (79%), Positives = 282/325 (86%), Gaps = 1/325 (0%) Query: 5 WGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPT 64 WGRPAS P GWAV+DVETSGFRPG AR+IS+A LGLDA G VE SVVSLLNPGVDPGPT Sbjct: 6 WGRPASEPDAGWAVIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPGVDPGPT 65 Query: 65 HVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSV 124 HVHGLTAAMLEDQPQFADI GD+ E+LRGRTLVAHNVAFDY+F PVD+V Sbjct: 66 HVHGLTAAMLEDQPQFADIAGDVVEVLRGRTLVAHNVAFDYAFLAAEAELAGIELPVDTV 125 Query: 125 MCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVW 184 MCTVELARRL+LGIDNLRLETLAAHWGVTQ+RPHDAFDDA+VL+G+LA ALQRARERD+W Sbjct: 126 MCTVELARRLDLGIDNLRLETLAAHWGVTQQRPHDAFDDAMVLTGVLASALQRARERDIW 185 Query: 185 LPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALAAEVG 244 LP+HPVTRRRWPNGRVTHDELRPLK LASRMPCPYLNPG YV RPLVQGMRVALAAEV Sbjct: 186 LPVHPVTRRRWPNGRVTHDELRPLKVLASRMPCPYLNPGPYVGGRPLVQGMRVALAAEVE 245 Query: 245 RTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQFMDRV 304 RTHEELVERILHAGLAYSD VDRETSLVVCN+ A + GKGY ARQLGVPV++D QF+D V Sbjct: 246 RTHEELVERILHAGLAYSDTVDRETSLVVCNDPAAEHGKGYLARQLGVPVISDAQFLDCV 305 Query: 305 GCVLGGTSAEKFTDHTLVEEQFALF 329 V+GGTS ++FTD T + Q ALF Sbjct: 306 RAVIGGTSMDEFTDAT-PDPQLALF 329 >tr|A0Q9T8|A0Q9T8_MYCA1 Tax_Id=243243 SubName: Full=DNA polymerase III subunit epsilon;[Mycobacterium avium] Length = 329 Score = 525 bits (1352), Expect = e-147 Identities = 258/325 (79%), Positives = 282/325 (86%), Gaps = 1/325 (0%) Query: 5 WGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPT 64 WGRPAS P GWAV+DVETSGFRPG AR+IS+A LGLDA G VE SVVSLLNPGVDPGPT Sbjct: 6 WGRPASEPDAGWAVIDVETSGFRPGQARIISLAVLGLDAGGKVEQSVVSLLNPGVDPGPT 65 Query: 65 HVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSV 124 HVHGLTAAMLEDQPQFADI GD+ E+LRGRTLVAHNVAFDY+F PVD+V Sbjct: 66 HVHGLTAAMLEDQPQFADIAGDVVEVLRGRTLVAHNVAFDYAFLAAEAELAGIELPVDTV 125 Query: 125 MCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVW 184 MCTVELARRL+LGIDNLRLETLAA+WGVTQ+RPHDAFDDA+VL+G+LA ALQRARERD+W Sbjct: 126 MCTVELARRLDLGIDNLRLETLAAYWGVTQQRPHDAFDDAMVLTGVLASALQRARERDIW 185 Query: 185 LPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALAAEVG 244 LP+HPVTRRRWPNGRVTHDELRPLK LASRMPCPYLNPG YV RPLVQGMRVALAAEV Sbjct: 186 LPVHPVTRRRWPNGRVTHDELRPLKVLASRMPCPYLNPGPYVGGRPLVQGMRVALAAEVE 245 Query: 245 RTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQFMDRV 304 RTHEELVERILHAGLAYSD VDRETSLVVCN+ A + GKGY ARQLGVPV++D QF+D V Sbjct: 246 RTHEELVERILHAGLAYSDTVDRETSLVVCNDPAAEHGKGYLARQLGVPVISDAQFLDCV 305 Query: 305 GCVLGGTSAEKFTDHTLVEEQFALF 329 V+GGTS ++FTD T + Q ALF Sbjct: 306 RAVIGGTSMDEFTDAT-PDPQLALF 329 >tr|Q7TVV5|Q7TVV5_MYCBO Tax_Id=1765 (dnaQ)SubName: Full=PUTATIVE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ; EC=2.7.7.7;[Mycobacterium bovis] Length = 329 Score = 515 bits (1326), Expect = e-144 Identities = 251/329 (76%), Positives = 278/329 (84%) Query: 1 VSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 +S WGRPASH GWAV+DVETSGFRPG AR+IS+A LGLDAAG +E SVVSLLNP VD Sbjct: 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP 120 PGPTHVHGLTAAML+DQPQFADI G++ ++LRGRTLVAHNVAFDY+F P Sbjct: 61 PGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 VD VMCTVELARRL+LG+DNLRLETLAAHWGV Q+RPHDAFDDA VL+GILA AL+ ARE Sbjct: 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILAAALESARE 180 Query: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 DVWLP+HPVTRRRWPNGRVTHDELRPLKALA+RM CPYLNPGRYV RPLVQGMRV LA Sbjct: 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 AEV RTHEELVERILHAGLAYSD VDR+TSLVVCN AP+ GKGYHA QLGVPV+ + +F Sbjct: 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query: 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 M+ +G V+GG S E FTD VE+Q ALF Sbjct: 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >tr|C1AIG5|C1AIG5_MYCBT Tax_Id=561275 (dnaQ)SubName: Full=DNA polymerase III subunit epsilon; EC=2.7.7.7;[Mycobacterium bovis] Length = 329 Score = 515 bits (1326), Expect = e-144 Identities = 251/329 (76%), Positives = 278/329 (84%) Query: 1 VSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 +S WGRPASH GWAV+DVETSGFRPG AR+IS+A LGLDAAG +E SVVSLLNP VD Sbjct: 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP 120 PGPTHVHGLTAAML+DQPQFADI G++ ++LRGRTLVAHNVAFDY+F P Sbjct: 61 PGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 VD VMCTVELARRL+LG+DNLRLETLAAHWGV Q+RPHDAFDDA VL+GILA AL+ ARE Sbjct: 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILAAALESARE 180 Query: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 DVWLP+HPVTRRRWPNGRVTHDELRPLKALA+RM CPYLNPGRYV RPLVQGMRV LA Sbjct: 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 AEV RTHEELVERILHAGLAYSD VDR+TSLVVCN AP+ GKGYHA QLGVPV+ + +F Sbjct: 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query: 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 M+ +G V+GG S E FTD VE+Q ALF Sbjct: 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >tr|A1KQ43|A1KQ43_MYCBP Tax_Id=410289 (dnaQ)SubName: Full=Putative dna polymerase III (Epsilon subunit) dnaQ; EC=2.7.7.7;[Mycobacterium bovis] Length = 329 Score = 515 bits (1326), Expect = e-144 Identities = 251/329 (76%), Positives = 278/329 (84%) Query: 1 VSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 +S WGRPASH GWAV+DVETSGFRPG AR+IS+A LGLDAAG +E SVVSLLNP VD Sbjct: 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP 120 PGPTHVHGLTAAML+DQPQFADI G++ ++LRGRTLVAHNVAFDY+F P Sbjct: 61 PGPTHVHGLTAAMLDDQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 VD VMCTVELARRL+LG+DNLRLETLAAHWGV Q+RPHDAFDDA VL+GILA AL+ ARE Sbjct: 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDARVLTGILAAALESARE 180 Query: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 DVWLP+HPVTRRRWPNGRVTHDELRPLKALA+RM CPYLNPGRYV RPLVQGMRV LA Sbjct: 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 AEV RTHEELVERILHAGLAYSD VDR+TSLVVCN AP+ GKGYHA QLGVPV+ + +F Sbjct: 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query: 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 M+ +G V+GG S E FTD VE+Q ALF Sbjct: 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >tr|Q7D508|Q7D508_MYCTU Tax_Id=1773 (dnaQ)SubName: Full=DNA polymerase III, epsilon subunit; EC=2.7.7.7;[Mycobacterium tuberculosis] Length = 329 Score = 511 bits (1315), Expect = e-143 Identities = 249/329 (75%), Positives = 276/329 (83%) Query: 1 VSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 +S WGRPASH GWAV+DVETSGFRPG AR+IS+A LGLDAAG +E SVVSLLNP VD Sbjct: 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP 120 PGPTHVHGLTAAML+ QPQFADI G++ ++LRGRTLVAHNVAFDY+F P Sbjct: 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 VD VMCTVELARRL+LG+DNLRLETLAAHWGV Q+RPHDAFDD VL+GILA AL+ ARE Sbjct: 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 Query: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 DVWLP+HPVTRRRWPNGRVTHDELRPLKALA+RM CPYLNPGRYV RPLVQGMRV LA Sbjct: 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 AEV RTHEELVERILHAGLAYSD VDR+TSLVVCN AP+ GKGYHA QLGVPV+ + +F Sbjct: 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query: 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 M+ +G V+GG S E FTD VE+Q ALF Sbjct: 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >tr|A5WTS9|A5WTS9_MYCTF Tax_Id=336982 SubName: Full=DNA polymerase III epsilon subunit dnaQ;[Mycobacterium tuberculosis] Length = 329 Score = 511 bits (1315), Expect = e-143 Identities = 249/329 (75%), Positives = 276/329 (83%) Query: 1 VSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 +S WGRPASH GWAV+DVETSGFRPG AR+IS+A LGLDAAG +E SVVSLLNP VD Sbjct: 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP 120 PGPTHVHGLTAAML+ QPQFADI G++ ++LRGRTLVAHNVAFDY+F P Sbjct: 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 VD VMCTVELARRL+LG+DNLRLETLAAHWGV Q+RPHDAFDD VL+GILA AL+ ARE Sbjct: 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 Query: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 DVWLP+HPVTRRRWPNGRVTHDELRPLKALA+RM CPYLNPGRYV RPLVQGMRV LA Sbjct: 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 AEV RTHEELVERILHAGLAYSD VDR+TSLVVCN AP+ GKGYHA QLGVPV+ + +F Sbjct: 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query: 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 M+ +G V+GG S E FTD VE+Q ALF Sbjct: 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >tr|A4KMH8|A4KMH8_MYCTU Tax_Id=395095 SubName: Full=DNA polymerase III (Epsilon subunit) dnaQ;[Mycobacterium tuberculosis str. Haarlem] Length = 329 Score = 511 bits (1315), Expect = e-143 Identities = 249/329 (75%), Positives = 276/329 (83%) Query: 1 VSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 +S WGRPASH GWAV+DVETSGFRPG AR+IS+A LGLDAAG +E SVVSLLNP VD Sbjct: 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP 120 PGPTHVHGLTAAML+ QPQFADI G++ ++LRGRTLVAHNVAFDY+F P Sbjct: 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 VD VMCTVELARRL+LG+DNLRLETLAAHWGV Q+RPHDAFDD VL+GILA AL+ ARE Sbjct: 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 Query: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 DVWLP+HPVTRRRWPNGRVTHDELRPLKALA+RM CPYLNPGRYV RPLVQGMRV LA Sbjct: 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 AEV RTHEELVERILHAGLAYSD VDR+TSLVVCN AP+ GKGYHA QLGVPV+ + +F Sbjct: 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query: 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 M+ +G V+GG S E FTD VE+Q ALF Sbjct: 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >tr|A2VM93|A2VM93_MYCTU Tax_Id=348776 SubName: Full=DNA polymerase III (Epsilon subunit) dnaQ;[Mycobacterium tuberculosis C] Length = 329 Score = 510 bits (1314), Expect = e-143 Identities = 249/329 (75%), Positives = 276/329 (83%) Query: 1 VSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 +S WGRPASH GWAV+DVETSGFRPG AR+IS+A LGLDAAG +E SVVSLLNP VD Sbjct: 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP 120 PGPTHVHGLTAAML+ QPQFADI G++ ++LRGRTLVAHNVAFDY+F P Sbjct: 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 VD VMCTVELARRL+LG+DNLRLETLAAHWGV Q+RPHDAFDD VL+GILA AL+ ARE Sbjct: 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 Query: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 DVWLP+HPVTRRRWPNGRVTHDELRPLKALA+RM CPYLNPGRYV RPLVQGMRV LA Sbjct: 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 AEV RTHEELVERILHAGLAYSD VDR+TSLVVCN AP+ GKGYHA QLGVPV+ + +F Sbjct: 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query: 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 M+ +G V+GG S E FTD VE+Q ALF Sbjct: 301 MECIGTVVGGASVEDFTDVAPVEKQLALF 329 >tr|O69678|O69678_MYCTU Tax_Id=1773 (dnaQ)SubName: Full=PROBABLE DNA POLYMERASE III (EPSILON SUBUNIT) DNAQ; EC=2.7.7.7;[Mycobacterium tuberculosis] Length = 329 Score = 509 bits (1312), Expect = e-142 Identities = 248/329 (75%), Positives = 276/329 (83%) Query: 1 VSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 +S WGRPASH GWAV+DVETSGFRPG AR+IS+A LGLDAAG +E SVVSLLNP VD Sbjct: 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP 120 PGPTHVHGLTAAML+ QPQFADI G++ ++LRGRTLVAHNVAFDY+F P Sbjct: 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 VD VMCTVELARRL+LG+DNLRLETLAAHWGV Q+RPHDAFDD VL+GILA AL+ ARE Sbjct: 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 Query: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 DVWLP+HPVTRRRWPNGRVTHDELRPLKA+A+RM CPYLNPGRYV RPLVQGMRV LA Sbjct: 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 AEV RTHEELVERILHAGLAYSD VDR+TSLVVCN AP+ GKGYHA QLGVPV+ + +F Sbjct: 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query: 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 M+ +G V+GG S E FTD VE+Q ALF Sbjct: 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >tr|A5U937|A5U937_MYCTA Tax_Id=419947 (dnaQ)SubName: Full=DNA polymerase III subunit epsilon DnaQ;[Mycobacterium tuberculosis] Length = 329 Score = 509 bits (1312), Expect = e-142 Identities = 248/329 (75%), Positives = 276/329 (83%) Query: 1 VSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 +S WGRPASH GWAV+DVETSGFRPG AR+IS+A LGLDAAG +E SVVSLLNP VD Sbjct: 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP 120 PGPTHVHGLTAAML+ QPQFADI G++ ++LRGRTLVAHNVAFDY+F P Sbjct: 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 VD VMCTVELARRL+LG+DNLRLETLAAHWGV Q+RPHDAFDD VL+GILA AL+ ARE Sbjct: 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWGVPQQRPHDAFDDVRVLTGILAAALESARE 180 Query: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 DVWLP+HPVTRRRWPNGRVTHDELRPLKA+A+RM CPYLNPGRYV RPLVQGMRV LA Sbjct: 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKAVAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 AEV RTHEELVERILHAGLAYSD VDR+TSLVVCN AP+ GKGYHA QLGVPV+ + +F Sbjct: 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query: 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 M+ +G V+GG S E FTD VE+Q ALF Sbjct: 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >tr|C6DNF1|C6DNF1_MYCTK Tax_Id=478434 SubName: Full=DNA polymerase III epsilon subunit dnaQ;[Mycobacterium tuberculosis] Length = 329 Score = 508 bits (1307), Expect = e-142 Identities = 248/329 (75%), Positives = 275/329 (83%) Query: 1 VSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 +S WGRPASH GWAV+DVETSGFRPG AR+IS+A LGLDAAG +E SVVSLLNP VD Sbjct: 1 MSHTWGRPASHQDRGWAVIDVETSGFRPGQARIISLAVLGLDAAGRLEQSVVSLLNPKVD 60 Query: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP 120 PGPTHVHGLTAAML+ QPQFADI G++ ++LRGRTLVAHNVAFDY+F P Sbjct: 61 PGPTHVHGLTAAMLDGQPQFADIAGEVVDVLRGRTLVAHNVAFDYAFLAAEAEIAEAELP 120 Query: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 VD VMCTVELARRL+LG+DNLRLETLAAHW V Q+RPHDAFDD VL+GILA AL+ ARE Sbjct: 121 VDFVMCTVELARRLQLGVDNLRLETLAAHWRVPQQRPHDAFDDVRVLTGILAAALESARE 180 Query: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 DVWLP+HPVTRRRWPNGRVTHDELRPLKALA+RM CPYLNPGRYV RPLVQGMRV LA Sbjct: 181 LDVWLPVHPVTRRRWPNGRVTHDELRPLKALAARMACPYLNPGRYVQGRPLVQGMRVGLA 240 Query: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 AEV RTHEELVERILHAGLAYSD VDR+TSLVVCN AP+ GKGYHA QLGVPV+ + +F Sbjct: 241 AEVKRTHEELVERILHAGLAYSDVVDRDTSLVVCNATAPEHGKGYHALQLGVPVMPEARF 300 Query: 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 M+ +G V+GG S E FTD VE+Q ALF Sbjct: 301 MECIGAVVGGASVEDFTDVAPVEKQLALF 329 >tr|A4T616|A4T616_MYCGI Tax_Id=350054 SubName: Full=DNA polymerase III, epsilon subunit; EC=2.7.7.7;[Mycobacterium gilvum] Length = 345 Score = 463 bits (1192), Expect = e-128 Identities = 223/327 (68%), Positives = 261/327 (79%) Query: 3 QNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPG 62 + WGRPA G GWAVVDVETSGFRPG AR++SVAAL L GNVE S+ SLL+PGVDPG Sbjct: 19 RRWGRPAHEDGAGWAVVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPGVDPG 78 Query: 63 PTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVD 122 PTHVHGLTA MLE QP F D+VGDL E+LRGRTLVAHNV FDYSF P+D Sbjct: 79 PTHVHGLTAEMLEGQPTFGDVVGDLCEVLRGRTLVAHNVGFDYSFLSAEAELVGAELPID 138 Query: 123 SVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERD 182 +VMCTVELARRL+LG++NLRLETLAAHWGVTQ RPHDA DDA+VL+ IL P L RA+ER Sbjct: 139 TVMCTVELARRLDLGLENLRLETLAAHWGVTQMRPHDALDDAMVLAQILKPVLVRAQERR 198 Query: 183 VWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALAAE 242 WLP+HPV RR WPNGRVTHDE RPLKALA+RM CPY NPGR+V RPLVQGMRVALAAE Sbjct: 199 KWLPVHPVGRRTWPNGRVTHDEFRPLKALAARMACPYANPGRFVSGRPLVQGMRVALAAE 258 Query: 243 VGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQFMD 302 VG T++EL+ERI+HAGLAY++ VD TSLVVC+ AP+QGKGY A + GVP+L +F+ Sbjct: 259 VGHTYDELIERIVHAGLAYTESVDAFTSLVVCDAAAPEQGKGYQAGEFGVPMLPSDEFLQ 318 Query: 303 RVGCVLGGTSAEKFTDHTLVEEQFALF 329 R+ V+GG++ E+F + + +QFALF Sbjct: 319 RLDAVIGGSAVEEFAEPSPAGDQFALF 345 >tr|A1TGI5|A1TGI5_MYCVP Tax_Id=350058 SubName: Full=DNA polymerase III, epsilon subunit; EC=2.7.7.7;[Mycobacterium vanbaalenii] Length = 333 Score = 462 bits (1188), Expect = e-128 Identities = 223/325 (68%), Positives = 256/325 (78%) Query: 5 WGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPT 64 WGRPA PG GWAVVDVETSGFRPG AR++SVAAL L GNVE S+ SLL+PGVDPGPT Sbjct: 9 WGRPADQPGAGWAVVDVETSGFRPGQARIVSVAALALSDDGNVEKSLYSLLDPGVDPGPT 68 Query: 65 HVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSV 124 HVHGLTA ML QP F D+VGDL E+LRGRTLVAHNV FDYSF PVD+V Sbjct: 69 HVHGLTAEMLAGQPAFGDVVGDLIEVLRGRTLVAHNVGFDYSFLTAEAEMVHAELPVDTV 128 Query: 125 MCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVW 184 MCTVELARRL+LG+DNLRLETLAAHWGVTQ +PHDA DDA+VL+ IL P L RA+ER W Sbjct: 129 MCTVELARRLDLGLDNLRLETLAAHWGVTQMKPHDALDDAMVLAQILKPVLVRAQERRKW 188 Query: 185 LPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALAAEVG 244 LP+HPV+RR WPNGR+THDE RPLKALA+RMPC Y NPG +V RPLVQGMRVAL+AEVG Sbjct: 189 LPVHPVSRRTWPNGRITHDEFRPLKALAARMPCAYANPGVFVAGRPLVQGMRVALSAEVG 248 Query: 245 RTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQFMDRV 304 THEELVERILHAGLA+++ VD TSLVVC++ AP+QGKGY A GVP L +F+ + Sbjct: 249 HTHEELVERILHAGLAFTEVVDGHTSLVVCDDPAPEQGKGYQAGGFGVPTLGSAEFLRHL 308 Query: 305 GCVLGGTSAEKFTDHTLVEEQFALF 329 V+GG++ E+F D +QF LF Sbjct: 309 DTVIGGSAIEEFADQASAGDQFTLF 333 >tr|A0R5Q6|A0R5Q6_MYCS2 Tax_Id=246196 SubName: Full=DNA polymerase III subunit epsilon;[Mycobacterium smegmatis] Length = 337 Score = 461 bits (1185), Expect = e-128 Identities = 223/327 (68%), Positives = 259/327 (79%) Query: 3 QNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPG 62 Q WGRPA PG GWAVVDVET+GFRPG AR++SVAAL + G+VEHS+ SLLNPGVDPG Sbjct: 11 QLWGRPADEPGSGWAVVDVETTGFRPGQARIVSVAALAVGDDGSVEHSMSSLLNPGVDPG 70 Query: 63 PTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVD 122 PTHVHGLTA MLE QP FAD+V +L E+LRGRTLVAHN FDYSF P+D Sbjct: 71 PTHVHGLTAEMLEGQPCFADVVDELIEVLRGRTLVAHNAGFDYSFLAAEAELVGAELPID 130 Query: 123 SVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERD 182 + MCTVELARRLELG +NLRLETLAAHWGVTQ +PHDA DDALVL+ IL P L RAR+R Sbjct: 131 TAMCTVELARRLELGTENLRLETLAAHWGVTQMKPHDALDDALVLAQILKPTLARARDRK 190 Query: 183 VWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALAAE 242 VWLP+ +TR+RWPNG VTHDELRPLK ASR+PC Y NPG +V RPLVQGMRVAL+AE Sbjct: 191 VWLPLRQLTRKRWPNGHVTHDELRPLKVEASRLPCRYANPGPFVAGRPLVQGMRVALSAE 250 Query: 243 VGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQFMD 302 V RTHEEL+ER+LHAGLAYSD VD +TSLV+CN+ AP+QGKGY A++LGVP++ D +FM Sbjct: 251 VVRTHEELLERVLHAGLAYSDMVDLQTSLVICNDPAPEQGKGYQAKELGVPLVRDDEFMR 310 Query: 303 RVGCVLGGTSAEKFTDHTLVEEQFALF 329 + V+GG E F D T +Q+ALF Sbjct: 311 LLDHVVGGADVETFVDTTADGDQYALF 337 >tr|Q1B280|Q1B280_MYCSS Tax_Id=164756 SubName: Full=DNA polymerase III, epsilon subunit; EC=2.7.7.7;[Mycobacterium sp.] Length = 330 Score = 454 bits (1169), Expect = e-126 Identities = 221/329 (67%), Positives = 258/329 (78%) Query: 1 VSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 VS WGRPA G GWAVVDVETSGFRPG AR++S+AAL + GNVE S+ +LLNPGVD Sbjct: 2 VSHGWGRPAVDTGTGWAVVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPGVD 61 Query: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP 120 PGPTHVHGLTA MLE P+F D+V DL ELLRGRTLVAHNV FDYSF P Sbjct: 62 PGPTHVHGLTAEMLEGAPRFGDVVADLAELLRGRTLVAHNVGFDYSFLTAEAELVGAELP 121 Query: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 +DSVMCTVELARRL+LG +NLRLETLAAHWGV Q +PHDA DDA VL+ IL P L RARE Sbjct: 122 IDSVMCTVELARRLDLGTENLRLETLAAHWGVPQLKPHDALDDAQVLAQILKPTLARARE 181 Query: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 R WLP V+RRRWPNGRVTHD+L PL+ +A+R+PC YLNPGRY+ RPLV+GMRVA+A Sbjct: 182 RRAWLPTRSVSRRRWPNGRVTHDDLHPLRMVAARLPCAYLNPGRYIAGRPLVKGMRVAVA 241 Query: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 AEV RT+EEL+ER+L AGLAY+D VD ETSLV+CN+ +QGKGY A++LGVPVL+D F Sbjct: 242 AEVTRTYEELIERLLTAGLAYTDAVDTETSLVICNQPDVEQGKGYQAQELGVPVLSDADF 301 Query: 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 + + V+GGT E+F D T V +QFALF Sbjct: 302 LRALDHVVGGTGIEEFFDATTVGDQFALF 330 >tr|A1UMX0|A1UMX0_MYCSK Tax_Id=189918 SubName: Full=DNA polymerase III, epsilon subunit; EC=2.7.7.7;[Mycobacterium sp.] Length = 330 Score = 454 bits (1169), Expect = e-126 Identities = 221/329 (67%), Positives = 258/329 (78%) Query: 1 VSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 VS WGRPA G GWAVVDVETSGFRPG AR++S+AAL + GNVE S+ +LLNPGVD Sbjct: 2 VSHGWGRPAVDTGTGWAVVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPGVD 61 Query: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP 120 PGPTHVHGLTA MLE P+F D+V DL ELLRGRTLVAHNV FDYSF P Sbjct: 62 PGPTHVHGLTAEMLEGAPRFGDVVADLAELLRGRTLVAHNVGFDYSFLTAEAELVGAELP 121 Query: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 +DSVMCTVELARRL+LG +NLRLETLAAHWGV Q +PHDA DDA VL+ IL P L RARE Sbjct: 122 IDSVMCTVELARRLDLGTENLRLETLAAHWGVPQLKPHDALDDAQVLAQILKPTLARARE 181 Query: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 R WLP V+RRRWPNGRVTHD+L PL+ +A+R+PC YLNPGRY+ RPLV+GMRVA+A Sbjct: 182 RRAWLPTRSVSRRRWPNGRVTHDDLHPLRMVAARLPCAYLNPGRYIAGRPLVKGMRVAVA 241 Query: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 AEV RT+EEL+ER+L AGLAY+D VD ETSLV+CN+ +QGKGY A++LGVPVL+D F Sbjct: 242 AEVTRTYEELIERLLTAGLAYTDAVDTETSLVICNQPDVEQGKGYQAQELGVPVLSDADF 301 Query: 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 + + V+GGT E+F D T V +QFALF Sbjct: 302 LRALDHVVGGTGIEEFFDATTVGDQFALF 330 >tr|A3Q7A4|A3Q7A4_MYCSJ Tax_Id=164757 SubName: Full=DNA polymerase III, epsilon subunit; EC=2.7.7.7;[Mycobacterium sp.] Length = 330 Score = 453 bits (1166), Expect = e-125 Identities = 221/329 (67%), Positives = 258/329 (78%) Query: 1 VSQNWGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 VS WGRPA G GWAVVDVETSGFRPG AR++S+AAL + GNVE S+ +LLNPGVD Sbjct: 2 VSHGWGRPAVDTGTGWAVVDVETSGFRPGQARIVSLAALAVGDDGNVEQSLATLLNPGVD 61 Query: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP 120 PGPTHVHGLTA MLE P+F DIV DL ELLRGRTLVAHNV FDYSF P Sbjct: 62 PGPTHVHGLTAEMLEGAPRFGDIVADLAELLRGRTLVAHNVGFDYSFLTAEAELVGAELP 121 Query: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 +DSVMCTVELARRL+LG +NLRLETLAAHWGV Q +PHDA DDA VL+ IL P L RARE Sbjct: 122 IDSVMCTVELARRLDLGTENLRLETLAAHWGVPQLKPHDALDDAQVLAQILKPTLARARE 181 Query: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 R WLP V+RRRWPNGRVTHD+L PL+ +A+R+PC YLNPGR++ RPLV+GMRVA+A Sbjct: 182 RRAWLPTRSVSRRRWPNGRVTHDDLHPLRMVAARLPCAYLNPGRFIAGRPLVKGMRVAVA 241 Query: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 AEV RT+EEL+ER+L AGLAY+D VD ETSLV+CN+ +QGKGY A++LGVPVL+D F Sbjct: 242 AEVTRTYEELIERLLTAGLAYTDAVDTETSLVICNQPDVEQGKGYQAQELGVPVLSDADF 301 Query: 301 MDRVGCVLGGTSAEKFTDHTLVEEQFALF 329 + + V+GGT E+F D T V +QFALF Sbjct: 302 LRALDHVVGGTGIEEFFDATTVGDQFALF 330 >tr|B1MFM8|B1MFM8_MYCA9 Tax_Id=561007 SubName: Full=DNA polymerase III, epsilon subunit (DnaQ);[Mycobacterium abscessus] Length = 327 Score = 426 bits (1096), Expect = e-117 Identities = 210/325 (64%), Positives = 246/325 (75%), Gaps = 1/325 (0%) Query: 5 WGRPASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPT 64 WG+ H + W VVD+ETSGF+PG ARVISVAAL +DA G + SVVSLLNPGVDPGPT Sbjct: 4 WGQTPDHSPK-WVVVDLETSGFQPGRARVISVAALAMDADGTITDSVVSLLNPGVDPGPT 62 Query: 65 HVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSV 124 HVHGLT MLE QP+F+DI DL LLRGRTLVAHNV FDYSF P ++V Sbjct: 63 HVHGLTPEMLEGQPEFSDIAPDLIALLRGRTLVAHNVGFDYSFLAAEAELVGAELPTEAV 122 Query: 125 MCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVW 184 MCTVEL RRLEL NLRLETLAAHWGV Q + HDA+DDA VL+ +L L+RARER W Sbjct: 123 MCTVELTRRLELDTPNLRLETLAAHWGVEQLKAHDAYDDARVLAEVLPKVLERARERGTW 182 Query: 185 LPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALAAEVG 244 LPI TR+RWPNGRVTHDELRPLK LASR PC +LNPG Y +PLVQGMRVAL++EV Sbjct: 183 LPIRETTRKRWPNGRVTHDELRPLKTLASRQPCHWLNPGPYTAGQPLVQGMRVALSSEVS 242 Query: 245 RTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQFMDRV 304 RTHEEL+E+I+ AGLAY+D VD +TSLV+CN++ P+QGKG+HAR LGVP+L D FM V Sbjct: 243 RTHEELIEQIMQAGLAYADAVDEDTSLVICNQENPEQGKGFHARSLGVPLLDDRTFMTEV 302 Query: 305 GCVLGGTSAEKFTDHTLVEEQFALF 329 V+GGT E+FT + Q++LF Sbjct: 303 RRVVGGTDIEQFTVPSRAGAQYSLF 327 >tr|Q0SFP4|Q0SFP4_RHOSR Tax_Id=101510 SubName: Full=Probable DNA polymerase III;[Rhodococcus sp.] Length = 649 Score = 215 bits (548), Expect = 5e-54 Identities = 127/299 (42%), Positives = 162/299 (54%), Gaps = 12/299 (4%) Query: 2 SQNWGRPASHP-GEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVD 60 S RP P G W VVDVETSG R RV+SVAAL L G+VE +V+LLNPG D Sbjct: 56 SSTMTRPVRLPTGHRWVVVDVETSGLRSSTHRVLSVAALALREDGSVERELVTLLNPGCD 115 Query: 61 PGPTHVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP 120 PGP H+H LT L P+F ++ DL ELL GRTLVAHN +FDY F P Sbjct: 116 PGPVHIHNLTPQRLAGAPRFEEVANDLLELLDGRTLVAHNASFDYGFLDAEVRRAGMTMP 175 Query: 121 VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARE 180 +CT+ L+RRLE+ + N +L TLAAHW V Q R HDA+DDALVL+ + A + A Sbjct: 176 TRQRLCTLALSRRLEIDVPNHKLSTLAAHWKVRQNRAHDAYDDALVLTEVFAHSASLAES 235 Query: 181 RDVWLPIHPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALA 240 + LP+ RR V D + R+ P+ NPGR LVQGM++ ++ Sbjct: 236 LRLPLPVVGCADRR----AVYPDRV-------PRVESPWRNPGRLDPGVGLVQGMKLVIS 284 Query: 241 AEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQ 299 L R+ AGL + V R+T +VVCN+ K A G+PVLT+ Q Sbjct: 285 GSTDVPRLSLAARLTAAGLDVMNSVSRQTGVVVCNDPHSSSAKVRRAVADGIPVLTERQ 343 >tr|C9NHS4|C9NHS4_9ACTO Tax_Id=591167 SubName: Full=DNA polymerase III, epsilon subunit;[Streptomyces flavogriseus ATCC 33331] Length = 346 Score = 212 bits (539), Expect = 6e-53 Identities = 128/303 (42%), Positives = 172/303 (56%), Gaps = 14/303 (4%) Query: 8 PASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVH 67 PA++P +G+AVVDVET+G R+IS A LDA G+VE +L+NP DPGP +H Sbjct: 25 PAAYP-QGYAVVDVETTGLARDD-RIISAAVYRLDARGDVEDHWYTLVNPERDPGPVWIH 82 Query: 68 GLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSVMCT 127 GLT+ +LE P F + +L+E L GR LVAHN AFD+S PV+ +CT Sbjct: 83 GLTSDVLEGAPLFPQVAAELSERLAGRVLVAHNAAFDWSMIAREYARAAVTAPVEQRLCT 142 Query: 128 VELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPI 187 + LA+ L L + N +LE+LAAH+GV Q+ H A DDA VL+ P+L A + V LP+ Sbjct: 143 IALAKELRLPLPNHKLESLAAHFGVVQQHAHHALDDARVLAEAFRPSLHAAAKGGVRLPL 202 Query: 188 ---HPVTRRRWPNGRVT-HDELRPLKALASRMP------CPYLNPGRYVCDRPLVQGMRV 237 P+T W + VT RP + S P CPY NPGRY D+PL+QGMRV Sbjct: 203 LECRPLT--EWYDSPVTPRAGYRPSQGQGSWRPSRKRPACPYPNPGRYESDKPLMQGMRV 260 Query: 238 ALAAEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTD 297 A + + E L +R + AGL + V R TSL+V N+ K A+ G PVL + Sbjct: 261 AFSGDTSIDRELLEDRAVEAGLHVATSVSRLTSLLVTNDPDSATSKTVKAKSFGTPVLEE 320 Query: 298 TQF 300 + F Sbjct: 321 SAF 323 >tr|B5GGH4|B5GGH4_9ACTO Tax_Id=465543 SubName: Full=DNA polymerase III subunit epsilon;[Streptomyces sp. SPB74] Length = 333 Score = 207 bits (527), Expect = 1e-51 Identities = 124/307 (40%), Positives = 166/307 (54%), Gaps = 16/307 (5%) Query: 8 PASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVH 67 P+++P EG+AVVDVET+G R++S A +DA G VE +L+NP DPGP +H Sbjct: 14 PSAYP-EGYAVVDVETTGLARDD-RIVSAAVYRVDARGEVEDHWYTLVNPERDPGPVWIH 71 Query: 68 GLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSVMCT 127 GLT+ +LE P F +I G+L+ L GR LVAHN FD+S PV +CT Sbjct: 72 GLTSEVLEGAPLFPEIAGELSRRLDGRVLVAHNAVFDWSMLAREYARAGITAPVRRRLCT 131 Query: 128 VELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPI 187 + LA+ L L + N +LETLAAH+GV Q R H A DDA VL+ P+L+ A +V LP+ Sbjct: 132 IALAKELALPLPNHKLETLAAHFGVEQRRAHHALDDARVLAEAFRPSLRAAALGNVRLPL 191 Query: 188 --------------HPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQ 233 PV R++ + + R PCPY NPGR+ RPLVQ Sbjct: 192 LECRPLTEWSDSPARPVIGRQYGGQYGSRPAAGNWRPSRKRPPCPYPNPGRWEDGRPLVQ 251 Query: 234 GMRVALAAEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVP 293 GMRVA + + E L +R AGL + + R TSL+V N+ K ARQ G P Sbjct: 252 GMRVAFSGDTSTERELLEDRATEAGLHVAGSISRLTSLLVTNDPDSGTSKTVRARQYGTP 311 Query: 294 VLTDTQF 300 V+ + F Sbjct: 312 VVDEAAF 318 >tr|D1BFD5|D1BFD5_9MICO Tax_Id=446469 SubName: Full=DNA polymerase III epsilon subunit-like 3'-5' exonuclease;[Sanguibacter keddieii DSM 10542] Length = 611 Score = 206 bits (525), Expect = 2e-51 Identities = 125/308 (40%), Positives = 165/308 (53%), Gaps = 16/308 (5%) Query: 9 ASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHG 68 AS G+AVVDVETSG P H RV+ VA ++ G + S SLL+PGVDPGP HVHG Sbjct: 15 ASRYPHGYAVVDVETSGLSPTHHRVLQVAVTQVEPDGALGRSWSSLLDPGVDPGPVHVHG 74 Query: 69 LTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSVMCTV 128 LT L PQ+ D+ G L EL+R R LVAHN FD+ F VD +CT+ Sbjct: 75 LTRERLAGAPQYQDVAGTLDELVRDRVLVAHNARFDWGFLAAESDRARAPLSVDRRLCTL 134 Query: 129 ELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPI- 187 L+RRL+L + +LRL T+AAHWGV Q R HDA DD VL +L +L A + LP+ Sbjct: 135 ALSRRLDLPVSDLRLATVAAHWGVQQRRAHDAEDDVRVLVEVLRHSLAAADRLGMTLPVA 194 Query: 188 -----HPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALAAE 242 P R P +RP + + R+PC + PGR+ P VQGM++ Sbjct: 195 ACGPGEPSARDGGP--------VRP--SPSPRVPCDWAWPGRWDGASPWVQGMKIVFTGP 244 Query: 243 VGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQFMD 302 R ++LV + AGL + TS+VVC A K AR G+ ++ + F+D Sbjct: 245 TERPRDDLVRLAVGAGLDVMNSASSRTSVVVCATPAATTRKLAAARAHGIEIVDERVFLD 304 Query: 303 RVGCVLGG 310 VG V+ G Sbjct: 305 LVGRVVPG 312 >tr|D1AAU1|D1AAU1_THECU Tax_Id=471852 SubName: Full=DNA polymerase III, epsilon subunit;[Thermomonospora curvata DSM 43183] Length = 328 Score = 204 bits (520), Expect = 9e-51 Identities = 124/302 (41%), Positives = 160/302 (52%), Gaps = 16/302 (5%) Query: 8 PASHP---GEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPT 64 PAS P W VVDVETSG RP RV+S+A L L G++ +LL+PG DPGP Sbjct: 5 PASGPLPYPHDWTVVDVETSGLRPDRHRVLSLAVLTLRPDGHLVEEFSTLLDPGCDPGPV 64 Query: 65 HVHGLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSV 124 H+HGLT L P F + + ELL GR +VAHN AFDY+F PV+ Sbjct: 65 HIHGLTPERLRGAPTFDRVAERVAELLSGRVMVAHNAAFDYAFLAHEFGRAGLHLPVEQR 124 Query: 125 MCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVW 184 +CT+ L RR+ L +LRL TLAAH+GV Q R HDA DDA VL+G+L +L A V Sbjct: 125 LCTLALGRRIGLPTPDLRLSTLAAHYGVPQHRAHDALDDARVLAGVLRASLADAAALGVP 184 Query: 185 LPI-----HPVTRRRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVAL 239 LP+ H V R NG + P++ + PC + PGR PLVQGM+V Sbjct: 185 LPLERCSFHSVLR----NGAARNGYPPPIR----KTPCAFRCPGRMRAGGPLVQGMKVVF 236 Query: 240 AAEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQ 299 E +EL +R AGL V R TS++V + K AR GVP++ + Sbjct: 237 TGETLTPRQELADRAAGAGLNVMSTVSRFTSVLVAADVHAASAKARRARAEGVPIIDEPT 296 Query: 300 FM 301 F+ Sbjct: 297 FL 298 >tr|C9ZG17|C9ZG17_STRSW Tax_Id=680198 SubName: Full=Putative DNA polymerase III, epsilon chain (EC 2.7.7.7);[Streptomyces scabies] Length = 613 Score = 204 bits (518), Expect = 2e-50 Identities = 121/286 (42%), Positives = 153/286 (53%), Gaps = 12/286 (4%) Query: 16 WAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHGLTAAMLE 75 WA+VDVETSG RPG RV+S++ L LDA GN +LLNP DPGP HVHGLTA L Sbjct: 19 WALVDVETSGLRPGRDRVLSLSILTLDAQGNQTGEFSTLLNPDCDPGPVHVHGLTADRLA 78 Query: 76 DQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSVMCTVELARRLE 135 P F +I + LL R LVAHN FDY F PV +CT+ L R + Sbjct: 79 GAPAFEEIAPQVGALLSSRVLVAHNAQFDYDFLAHEFAQVRSWAPVSRRLCTLALNRLVG 138 Query: 136 LGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPIHPVTRRRW 195 +L+L TLAAH+GV QE+ HDA DD VLSGIL +L A + + LP+ Sbjct: 139 PATPDLKLGTLAAHYGVRQEKAHDAQDDVRVLSGILRGSLSAAEQLGLALPV-------- 190 Query: 196 PNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALAAEVGRTHEELVERIL 255 G + RP + PC Y NPGR PLVQGM+VA+ + + EELV R + Sbjct: 191 -LGCPPRQDYRP---YVPKTPCAYRNPGRMAPGGPLVQGMKVAITGDTRVSREELVARSV 246 Query: 256 HAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQFM 301 AGL V +TS+VV N K A GVP++ + ++ Sbjct: 247 AAGLNMMTSVSGQTSVVVTNAPGTGSAKLKRAADEGVPLVDEPTYL 292 >tr|B1W1U8|B1W1U8_STRGG Tax_Id=455632 SubName: Full=Putative DNA polymerase III epsilon subunit;[Streptomyces griseus subsp. griseus] Length = 341 Score = 201 bits (512), Expect = 8e-50 Identities = 123/306 (40%), Positives = 168/306 (54%), Gaps = 20/306 (6%) Query: 8 PASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVH 67 P ++P +G+AVVDVET+G R+IS A LDA GNVE +L+NP DPGP +H Sbjct: 12 PTAYP-QGYAVVDVETTGLARDD-RIISAAVYRLDALGNVEDHWYTLVNPERDPGPVWIH 69 Query: 68 GLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSVMCT 127 GLT+ +LE P F ++ +L+ L R LVAHN AFD+S PV+ +CT Sbjct: 70 GLTSDVLEGAPLFPEVAEELSARLADRVLVAHNAAFDWSMIAREYARASVVAPVEQRLCT 129 Query: 128 VELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPI 187 + LA+ L L + N +L +LAAH+GV Q+R H A DDA VL+ P+L A V LP+ Sbjct: 130 IALAKELRLPLPNHKLASLAAHFGVVQQRAHHALDDARVLAEAFRPSLHAAARGGVRLPL 189 Query: 188 ---HPVTRRRWPNGRVT----------HDELRPLKALASRMPCPYLNPGRYVCDRPLVQG 234 P+T W + VT + RP + R CPY NPGRY ++PL QG Sbjct: 190 LECRPLT--EWSDSPVTPRVGYQPSRQPNSWRPSR---KRPACPYPNPGRYEKEKPLQQG 244 Query: 235 MRVALAAEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPV 294 MRVA + + E L +R + AGL + V R TSL+V N+ K A+ G P+ Sbjct: 245 MRVAFSGDTSIDRELLEDRAIEAGLHVATSVSRLTSLLVTNDPDAATSKTQKAKSFGTPI 304 Query: 295 LTDTQF 300 L ++ F Sbjct: 305 LEESAF 310 >tr|A8LH88|A8LH88_FRASN Tax_Id=298653 SubName: Full=Exonuclease RNase T and DNA polymerase III;[Frankia sp.] Length = 389 Score = 200 bits (509), Expect = 2e-49 Identities = 129/297 (43%), Positives = 166/297 (55%), Gaps = 8/297 (2%) Query: 16 WAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHGLTAAMLE 75 +AVVDVET+G P RV+SVA + A G VEH +LL+PG DPGP H+HGLT L Sbjct: 77 YAVVDVETTGLSPTRDRVLSVAVVLTAADGTVEHRWSTLLDPGCDPGPVHIHGLTRQRLA 136 Query: 76 DQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSVMCTVELARRLE 135 P FA + ++ LL GR LVAHN AFD+ PV+ +CT+ LA RL Sbjct: 137 GSPTFAAVADEVAGLLAGRVLVAHNAAFDWRMLAGEAMRIGTTIPVEWRLCTLTLASRLG 196 Query: 136 LGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPIHPVTRRRW 195 L + +LRL +LAA+WGV Q R HDA DDA VL+ +L LQRA ++ + LP+ TR Sbjct: 197 LELPSLRLASLAAYWGVVQRRAHDAQDDAEVLAALLPRILQRAADQYLELPL---TRCGV 253 Query: 196 PNGRVTHDELRPLK-ALASRM-PCPYLNPGRYVCDRPLVQGMRVALAAEVGRTHEELVER 253 + VT +RP + A A R PC Y NPGR LVQGMRVA + ELV R Sbjct: 254 DHDGVT---VRPPRFAAAGRTPPCRYRNPGRLDPGAALVQGMRVAFSGPTRTERGELVGR 310 Query: 254 ILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQFMDRVGCVLGG 310 + AGL ++ V R TSL+V N+ K A L PV + F++ + V G Sbjct: 311 AVAAGLHVTETVSRRTSLLVTNDARGVTRKVRTAALLNTPVRGEEDFLELLAAVRPG 367 >tr|Q829H2|Q829H2_STRAW Tax_Id=33903 (dnaQ1)SubName: Full=Putative DNA polymerase III epsilon subunit;[Streptomyces avermitilis] Length = 325 Score = 199 bits (507), Expect = 3e-49 Identities = 123/303 (40%), Positives = 163/303 (53%), Gaps = 15/303 (4%) Query: 8 PASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVH 67 PA++P +G+AVVDVET+G R+IS A LDA G VE +++NP DPGP +H Sbjct: 15 PAAYP-QGYAVVDVETTGLARDD-RIISAAVYRLDARGEVEDHWYTMVNPERDPGPVWIH 72 Query: 68 GLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSVMCT 127 GLT+ +LE P F DI + L R LVAHN FD+S PV +CT Sbjct: 73 GLTSDVLEGAPLFEDIAAEFASRLADRVLVAHNAVFDWSMIAREYARAKSQAPVRQRLCT 132 Query: 128 VELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPI 187 + L++ L L + N +LE+LAAH+GV Q+R H A DDA VL+ P+L A V LP+ Sbjct: 133 IALSKELGLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFRPSLHAAARDGVRLPL 192 Query: 188 ---HPVTR-------RRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRV 237 P+T R P+G RP + R CPY NPGRY +PL QGMRV Sbjct: 193 LECLPLTEWNATPRIGRQPSGGYPSGSWRPSR---KRPVCPYPNPGRYEEGKPLKQGMRV 249 Query: 238 ALAAEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTD 297 A + + E L +R + AGL + + R TSL+V N+ K ARQ G PV+ + Sbjct: 250 AFSGDTSVDRELLEDRAVEAGLHVATSLSRLTSLLVTNDPGSGTSKTAKARQYGTPVIDE 309 Query: 298 TQF 300 F Sbjct: 310 AAF 312 >tr|B4VE41|B4VE41_9ACTO Tax_Id=465541 SubName: Full=DNA polymerase III subunit epsilon;[Streptomyces sp. Mg1] Length = 334 Score = 196 bits (499), Expect = 2e-48 Identities = 121/306 (39%), Positives = 163/306 (53%), Gaps = 20/306 (6%) Query: 8 PASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVH 67 P ++P EG+AVVDVET+G R++S A LDA GNVE +L+NP DPGP +H Sbjct: 24 PTAYP-EGYAVVDVETTGLAR-EDRIVSAAVYRLDAQGNVEDHWYTLVNPQRDPGPVWIH 81 Query: 68 GLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSVMCT 127 GLT+ ML+D P F DI G+ L R LVAHN FD+ PV +CT Sbjct: 82 GLTSDMLQDAPLFKDIAGEFAGRLADRVLVAHNAIFDWQMIAREYARAEETAPVRQRLCT 141 Query: 128 VELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPI 187 + L++ L L + N +LE+LAAH+GV Q+R H A DDA VL+ P+L A V LP+ Sbjct: 142 IALSKELNLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFRPSLHAAARDGVRLPL 201 Query: 188 ---HPVTRRRWPNGRVT----------HDELRPLKALASRMPCPYLNPGRYVCDRPLVQG 234 P+T W + VT RP + R CP+ NPGR+ +PL QG Sbjct: 202 LECRPLT--EWSDSAVTPRIGYQSSYRGGGWRPSR---KRPACPHPNPGRFEDGKPLKQG 256 Query: 235 MRVALAAEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPV 294 MR+A + + E L +R + AGL + V R TSL+V N+ K A+ G PV Sbjct: 257 MRIAFSGDTSVERELLEDRAVEAGLHIATSVSRLTSLLVTNDPDSATSKTVKAKSFGTPV 316 Query: 295 LTDTQF 300 + + F Sbjct: 317 VDEAAF 322 >tr|D0L8D9|D0L8D9_GORB4 Tax_Id=526226 SubName: Full=Exonuclease RNase T and DNA polymerase III;[Gordonia bronchialis] Length = 590 Score = 196 bits (498), Expect = 3e-48 Identities = 113/299 (37%), Positives = 157/299 (52%), Gaps = 15/299 (5%) Query: 15 GWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHGLTAAML 74 GW +VDVET+G RV+S+A + LD G VE +LLNPG DPGP H+H LT L Sbjct: 9 GWVLVDVETTGTNARRDRVLSLATMTLDYDGRVEDEYATLLNPGCDPGPVHIHNLTRDRL 68 Query: 75 EDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSVMCTVELARRL 134 P F + L ++L GRT+VAHN FD+ F P+D +CTV LARRL Sbjct: 69 HGAPTFDVTMSPLQQMLAGRTMVAHNATFDHGFLVEEARRLGATLPIDHRLCTVTLARRL 128 Query: 135 ELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPIHP--VTR 192 +L + N++L TLA +WG+ Q HDA DD L+ + +L A + LP+ V Sbjct: 129 QLDVPNVKLGTLATYWGIRQRAAHDARDDVRTLAEVFRRSLDLAETLGLRLPVVACGVNS 188 Query: 193 RRWPNGRVTHDELRPLKALASRMPCPYLNPGRYVCDRPLVQGMRVALAAEVGRTHEELVE 252 R +P+ +VT R+PCP+ +PGR+ L+QG +VA+ EL Sbjct: 189 RAFPD-KVT------------RVPCPWRDPGRFDPAVGLIQGTKVAITGPTTVPRTELAR 235 Query: 253 RILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQFMDRVGCVLGGT 311 R+ AGL + V +T +V+ N +PD K AR G PVL + + +L GT Sbjct: 236 RLSDAGLDVMNSVSGKTGIVIANPGSPDSRKLQRARLDGTPVLDEGTMLRLADHILPGT 294 >tr|Q9RJ41|Q9RJ41_STRCO Tax_Id=1902 SubName: Full=Putative DNA polymerase III, epsilon chain (EC 2.7.7.7);[Streptomyces coelicolor] Length = 328 Score = 196 bits (497), Expect = 4e-48 Identities = 123/305 (40%), Positives = 166/305 (54%), Gaps = 16/305 (5%) Query: 8 PASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVH 67 PA++P +G+AVVDVET+G R+IS A LDA G VE +L+NP DPGP +H Sbjct: 16 PAAYP-QGYAVVDVETTGLARDD-RIISAAVYRLDARGEVEDHWYTLVNPQRDPGPVWIH 73 Query: 68 GLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSVMCT 127 GLT+ +L D P F D+ + L GR LVAHN FD+ PV +CT Sbjct: 74 GLTSDVLRDAPLFPDVAEEFAARLDGRVLVAHNAVFDWQMIAREYARAEREAPVRQRLCT 133 Query: 128 VELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPI 187 + L++ L+L + N +LE+LAAH+GV Q+R H A DDA VL+ P+L A DV LP+ Sbjct: 134 IALSKALDLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFRPSLLAAAAGDVRLPL 193 Query: 188 H---PVTRRRW---PNGRV----THDELRPLKALASRM--PCPYLNPGRYVCDRPLVQGM 235 H P+T W P R+ + RP SR CP+ NPGRY + L QGM Sbjct: 194 HECRPLT--EWSDRPAPRIGQQAGYGSYRPTSWRPSRKRPACPHPNPGRYEEGKRLKQGM 251 Query: 236 RVALAAEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVL 295 RVA + + + L +R + AGL + + R TSL+V N+ K ARQ G PV+ Sbjct: 252 RVAFSGDTSVERDLLEDRAVEAGLHVATSLSRLTSLLVTNDPDSGTSKVVKARQFGTPVV 311 Query: 296 TDTQF 300 + F Sbjct: 312 DEAAF 316 >tr|C9YZT9|C9YZT9_STRSW Tax_Id=680198 SubName: Full=Putative exonuclease;[Streptomyces scabies] Length = 331 Score = 195 bits (495), Expect = 7e-48 Identities = 122/307 (39%), Positives = 165/307 (53%), Gaps = 16/307 (5%) Query: 8 PASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVH 67 P ++P +G+AVVDVET+G R+IS A LDA G VE +L+NP DPGP +H Sbjct: 15 PTAYP-QGYAVVDVETTGLARDD-RIISAAVYRLDARGEVEDHWYTLVNPERDPGPVWIH 72 Query: 68 GLTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSVMCT 127 GLT+ +LE P F DI + + L R LVAHN FD+S PV +CT Sbjct: 73 GLTSDVLEGAPLFRDIAQEFSARLADRVLVAHNAVFDWSMIAREYARAETEAPVRQRLCT 132 Query: 128 VELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPI 187 + L++ L L + N +LE+LAAH+GV Q+R H A DDA VL+ P+L+ A +V LP+ Sbjct: 133 IALSKELGLPLPNHKLESLAAHFGVVQQRAHHALDDARVLAEAFRPSLRAAAASNVRLPL 192 Query: 188 H---PVTRRR---------WPNGRVTHDELRPLKALASRM--PCPYLNPGRYVCDRPLVQ 233 H P+T R G + RP SR CP+ NPGRY +PL Q Sbjct: 193 HECRPLTEWRESPAAPRIGQQAGPGGYGAYRPTSWRPSRKRPACPHPNPGRYEDGKPLKQ 252 Query: 234 GMRVALAAEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVP 293 GMRVA + + + L +R + AGL + + R TSL+V N+ K ARQ G P Sbjct: 253 GMRVAFSGDTSVERDLLEDRAIEAGLHVATSLSRVTSLLVTNDPDSHTSKVVKARQYGTP 312 Query: 294 VLTDTQF 300 V+ + F Sbjct: 313 VVDEAAF 319 >tr|Q1B0K2|Q1B0K2_MYCSS Tax_Id=164756 SubName: Full=DNA polymerase III, epsilon subunit;[Mycobacterium sp.] Length = 193 Score = 177 bits (449), Expect = 2e-42 Identities = 95/174 (54%), Positives = 114/174 (65%) Query: 16 WAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHGLTAAMLE 75 + VVDVETSGF P AR++SVAAL + G ++ +LL+PGVDPGPT +HGLT AML Sbjct: 7 FVVVDVETSGFDPHTARILSVAALVVTTNGVTTTALHTLLDPGVDPGPTDIHGLTTAMLA 66 Query: 76 DQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSVMCTVELARRLE 135 QP++ADI DL LL GR LVAHN AFDY+F PV SV+CT+ELA RL Sbjct: 67 GQPRYADIATDLAALLSGRILVAHNAAFDYAFLAAEARRAGAELPVSSVLCTLELAGRLH 126 Query: 136 LGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPIHP 189 L + +L L LA HW + Q RPHDA DDA VL+ +L A RA E V LPI P Sbjct: 127 LDLASLSLAALAHHWNIPQARPHDALDDARVLTHVLRHARARADELAVPLPIRP 180 >tr|A1UQE8|A1UQE8_MYCSK Tax_Id=189918 SubName: Full=DNA polymerase III, epsilon subunit;[Mycobacterium sp.] Length = 193 Score = 177 bits (449), Expect = 2e-42 Identities = 95/174 (54%), Positives = 114/174 (65%) Query: 16 WAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHGLTAAMLE 75 + VVDVETSGF P AR++SVAAL + G ++ +LL+PGVDPGPT +HGLT AML Sbjct: 7 FVVVDVETSGFDPHTARILSVAALVVTTNGVTTTALHTLLDPGVDPGPTDIHGLTTAMLA 66 Query: 76 DQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSVMCTVELARRLE 135 QP++ADI DL LL GR LVAHN AFDY+F PV SV+CT+ELA RL Sbjct: 67 GQPRYADIATDLAALLSGRILVAHNAAFDYAFLAAEARRAGAELPVSSVLCTLELAGRLH 126 Query: 136 LGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPIHP 189 L + +L L LA HW + Q RPHDA DDA VL+ +L A RA E V LPI P Sbjct: 127 LDLASLSLAALAHHWNIPQARPHDALDDARVLTHVLRHARARADELAVPLPIRP 180 >tr|A6WGD9|A6WGD9_KINRD Tax_Id=266940 SubName: Full=DNA polymerase III, epsilon subunit;[Kineococcus radiotolerans] Length = 224 Score = 150 bits (379), Expect = 2e-34 Identities = 84/173 (48%), Positives = 104/173 (60%), Gaps = 1/173 (0%) Query: 16 WAVVDVETSGFRPGHA-RVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHGLTAAML 74 +AV+DVET+G RP RV+ +A LDA G VE S SL++P DPGPTHVHG+TA L Sbjct: 26 YAVLDVETTGLRPETGDRVVQIAVTLLDARGTVERSWSSLVDPHRDPGPTHVHGITAERL 85 Query: 75 EDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSVMCTVELARRL 134 P FA + + LL GR VAHN FD+ F PV +CT ELA+RL Sbjct: 86 AGAPTFAQLAPTVAGLLDGRVFVAHNARFDWKFVSAEMRAAGVHLPVRQRLCTWELAQRL 145 Query: 135 ELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPI 187 +L ++NL+L TLA HWGV Q RPHDA DD VL +L L A + + LPI Sbjct: 146 DLPVENLKLATLAEHWGVRQLRPHDAEDDTRVLVEVLREELLDAAGQRLDLPI 198 >tr|C2GJE7|C2GJE7_9CORY Tax_Id=548478 SubName: Full=DNA polymerase III subunit epsilon;[Corynebacterium glucuronolyticum ATCC 51866] Length = 312 Score = 124 bits (312), Expect = 1e-26 Identities = 91/311 (29%), Positives = 141/311 (45%), Gaps = 45/311 (14%) Query: 21 VETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHGLTAAMLEDQPQF 80 ++T+G P AR++++ A+ DA G + +++NP DPGP H+HG+ A +E F Sbjct: 10 IQTTGLHPSTARIVTIDAVTFDAEGTPVDTFFTMVNPVTDPGPRHLHGVPRAEVEAARPF 69 Query: 81 ADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXX-----------------PVDS 123 + L LL GRTL+ HN + F PV + Sbjct: 70 GHFLKKLCTLLDGRTLITHNAPQTWGFIVSESKRTLKARRRKRGGRRRRGVGHVPRPV-A 128 Query: 124 VMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDV 183 V+ T+ ARR + + + RL +LA G + +S PA + RE + Sbjct: 129 VVDTLGAARREGIFVTDTRLRSLAHQLGYN-------VSEKASISRAQQPAAELTREDTL 181 Query: 184 WLPIHPVTRRRWPNGRVTHDELRPLKALASRM-------------PCPYLNPGRYVCDRP 230 L R + R TH P + A R NPG++ + Sbjct: 182 LL-----ARLFFERFRDTHAVSDPKELKADRFGLQRSLIRVDAAAAAKKPNPGQFAGE-- 234 Query: 231 LVQGMRVALAAEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQL 290 L GM V +A E+ R ++++ ++ LAYS+ V R TSLVVCNE P +GKG HA + Sbjct: 235 LKPGMEVVVAPEIARDPDDIIHAVVDGELAYSEKVTRTTSLVVCNEKRPRRGKGMHAHRK 294 Query: 291 GVPVLTDTQFM 301 G+P++TD +F+ Sbjct: 295 GIPLITDEEFL 305 >tr|C0VRK8|C0VRK8_9CORY Tax_Id=548477 SubName: Full=DNA polymerase III subunit epsilon;[Corynebacterium glucuronolyticum ATCC 51867] Length = 312 Score = 124 bits (312), Expect = 1e-26 Identities = 91/311 (29%), Positives = 141/311 (45%), Gaps = 45/311 (14%) Query: 21 VETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHGLTAAMLEDQPQF 80 ++T+G P AR++++ A+ DA G + +++NP DPGP H+HG+ A +E F Sbjct: 10 IQTTGLHPSTARIVTIDAVTFDAEGTPVDTFFTMVNPVTDPGPRHLHGVPRAEVEAARPF 69 Query: 81 ADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXX-----------------PVDS 123 + L LL GRTL+ HN + F PV + Sbjct: 70 GHFLKKLCTLLDGRTLITHNAPQTWGFIVSESKRTLKARRRKRGGRRRRGVGHVPRPV-A 128 Query: 124 VMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDV 183 V+ T+ ARR + + + RL +LA G + +S PA + RE + Sbjct: 129 VVDTLGAARREGIFVTDTRLRSLAHQLGYN-------VSEKASISRAQQPAAELTREDTL 181 Query: 184 WLPIHPVTRRRWPNGRVTHDELRPLKALASRM-------------PCPYLNPGRYVCDRP 230 L R + R TH P + A R NPG++ + Sbjct: 182 LL-----ARLFFERFRDTHAVSDPKELKADRFGLQRSLIRVDAAAAAKKPNPGQFAGE-- 234 Query: 231 LVQGMRVALAAEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQL 290 L GM V +A E+ R ++++ ++ LAYS+ V R TSLVVCNE P +GKG HA + Sbjct: 235 LKPGMEVVVAPEIARDPDDIIHAVVDGELAYSEKVTRTTSLVVCNEKRPRRGKGMHAHRK 294 Query: 291 GVPVLTDTQFM 301 G+P++TD +F+ Sbjct: 295 GIPLITDEEFL 305 >tr|C0WHW0|C0WHW0_9CORY Tax_Id=525260 SubName: Full=DNA polymerase III subunit epsilon;[Corynebacterium accolens ATCC 49725] Length = 479 Score = 120 bits (300), Expect = 3e-25 Identities = 86/341 (25%), Positives = 155/341 (45%), Gaps = 48/341 (14%) Query: 11 HPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHGLT 70 HP + + ++T+G P R++++ A+ D AG++ ++L P +D GP H+HGLT Sbjct: 111 HP---YVALTLQTTGIHPSTGRIVTIDAVAFDNAGDIGQRFHAVLKPDIDAGPHHLHGLT 167 Query: 71 AAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSVMCTVEL 130 A +E P F+ I+ L +L+ GRTLV H++ + + F ++M Sbjct: 168 VADIEQAPAFSRILKSLDKLIDGRTLVVHDIPYTWGFIVAEARR--------AMMTAARQ 219 Query: 131 ARRLELGIDNLR---------------LETLAAHW------------GVTQERPHDAFDD 163 R G + + ++TLA + GV ++ DA D Sbjct: 220 NRARNRGRNKGKRRRQKVGHMPAPVRIIDTLATSYAQGVRSNDVRLRGVAKQNGLDA-DP 278 Query: 164 ALVLSGILAPALQRARERDVWLPIHPVTRRRWPNGRVTHDELRP---------LKALASR 214 + P + +RE L ++R P D++R ++ A+ Sbjct: 279 KATVERARRPEQETSREETELLIQLYQHQQRGPVRSYAPDDVRADRFGLQRSHVRVDAAE 338 Query: 215 MPCPYLNPGRYVCDRPLVQGMRVALAAEVGRTHEELVERILHAGLAYSDGVDRETSLVVC 274 P + NPG+Y + L +GM + +A E+ + ++ ++ L YS+ + RE SLVVC Sbjct: 339 APVQHHNPGKYEPGKELRRGMEIVVAPEILEDPDTIISALMREELNYSEKLTREASLVVC 398 Query: 275 NEDAPDQGKGYHARQLGVPVLTDTQFMDRVGCVLGGTSAEK 315 N GK HA++ G+P+++D F+D + + T+A + Sbjct: 399 NVTTDLVGKAMHAQRKGIPLMSDAAFLDALTRIEEPTTARR 439 >tr|Q6NJX7|Q6NJX7_CORDI Tax_Id=1717 SubName: Full=Putative helicase;[Corynebacterium diphtheriae] Length = 373 Score = 115 bits (287), Expect = 9e-24 Identities = 86/332 (25%), Positives = 151/332 (45%), Gaps = 40/332 (12%) Query: 16 WAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHGLTAAMLE 75 + + V+ SG P +R++++ A+ G ++LNP +PGP H+HGL+ ++ Sbjct: 48 YVALSVQASGIHPSTSRLVTIDAVTFTEQGEEVDHFFAVLNPESNPGPFHLHGLSPEQIQ 107 Query: 76 DQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXX---------------- 119 + +++ I+ L L+ GRTL+ HN + F Sbjct: 108 EGKRYSQILKALDRLIDGRTLLVHNAELVWGFIVSESKRAMSNAARANRSRSRQRNRRRQ 167 Query: 120 -------PVDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILA 172 PV +++ T+ ARRL L ++R+ +A G+ +A D ++ A Sbjct: 168 RVGHIPKPV-TIVDTLATARRLGLTFADIRIRNVATQLGL------EAPDARASVARAQA 220 Query: 173 PALQRARERDVWLP-IHPVTRRRWPNGRVTHDELRP---------LKALASRMPCPYLNP 222 Q RE + + + V + + +LR ++ A +P + NP Sbjct: 221 DTAQLTREDTLLVARMFFVEHAQGAVSSTSPADLRADRFGLQRSNVRVDAMEVPRVWENP 280 Query: 223 GRYVCDRPLVQGMRVALAAEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQG 282 G Y +R LVQGM V +A E+ + +++ I+ LAY++ + R +SLVVCN+ G Sbjct: 281 GVYTKERGLVQGMEVVVAPEITMDPDRIIQAIVRTELAYNEKITRASSLVVCNKREDLTG 340 Query: 283 KGYHARQLGVPVLTDTQFMDRVGCVLGGTSAE 314 K H + G+P++TD +F+ V V G AE Sbjct: 341 KAMHGDRKGIPLMTDEEFLRAVEHVKPGKPAE 372 >tr|A0K225|A0K225_ARTS2 Tax_Id=290399 SubName: Full=DNA polymerase III, epsilon subunit;[Arthrobacter sp.] Length = 406 Score = 109 bits (273), Expect = 4e-22 Identities = 66/172 (38%), Positives = 90/172 (52%), Gaps = 3/172 (1%) Query: 15 GWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHGLTAAML 74 G+AVVDVET+G PG+ R+ +A + +D G V + +L+NP D GP H+HG+ AA + Sbjct: 4 GFAVVDVETTGLFPGNHRIAEIAVVHVDPDGTVSNRWETLVNPQRDLGPQHIHGIRAADI 63 Query: 75 EDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP--VDSVMCTVELAR 132 P F DI D+ ELL GR LVAHNV FDY F P V +CT++LAR Sbjct: 64 LHAPVFGDIAHDVMELLAGRVLVAHNVHFDYRFVSHELGRAGLELPFEVHDCLCTMKLAR 123 Query: 133 RLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVW 184 R G L+ +G+ H A DDA + +L+ L+ W Sbjct: 124 RYLPGAGR-SLKDCCDSFGLNLANAHSAGDDAEAAAHVLSNYLRMDSGNPEW 174 >tr|C2CS90|C2CS90_CORST Tax_Id=525268 SubName: Full=DNA polymerase III subunit epsilon;[Corynebacterium striatum ATCC 6940] Length = 526 Score = 108 bits (271), Expect = 7e-22 Identities = 85/330 (25%), Positives = 148/330 (44%), Gaps = 49/330 (14%) Query: 9 ASHPGEGWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHG 68 A+HP + + V+T+G P AR++++ AL +A G V +++NP +DPGP H+HG Sbjct: 83 AAHP---FVALTVQTTGIHPSTARLVAIDALTFNAQGEVGQEFHAVVNPDIDPGPRHLHG 139 Query: 69 LTAAMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSF--------------------- 107 LT + F+ ++ L L+ GRTL+ H+ F + F Sbjct: 140 LTPEEVARGQAFSRLLKPLDRLIDGRTLIVHDTPFTWGFIVSEARRAMMAAARQNRSRNR 199 Query: 108 -----XXXXXXXXXXXXPVDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFD 162 PV +++ T+ ARR + +++RL +A G+ P Sbjct: 200 NRNKGRRRRQKVGHVPTPV-TIVDTLATARRQGVWENDIRLAAVAKRSGLDVPPP----- 253 Query: 163 DALVLSGILAPALQRARERDVWLPIHPVTRRRWPNGRVTH--DELRP---------LKAL 211 + A + R+ ++ + R + T+ DELR ++ Sbjct: 254 ---TATTQRAQRSEAETSREATQLLYRLYRLQAGKTLSTYAPDELRADRFGLQRSHVRVD 310 Query: 212 ASRMPCPYLNPGRYVCDRPLVQGMRVALAAEVGRTHEELVERILHAGLAYSDGVDRETSL 271 A+ P + NPG+Y + L +GM + +A E+ + ++ + L YS+ + RETSL Sbjct: 311 AAEAPRQHHNPGKYQPGKELRRGMEIVVAPEILEDPDTIISALGREELNYSEKLTRETSL 370 Query: 272 VVCNEDAPDQGKGYHARQLGVPVLTDTQFM 301 VVCN GK HA + +P+++DT F+ Sbjct: 371 VVCNVTTDLVGKPMHAHRKDIPLMSDTAFL 400 >tr|C8NXJ5|C8NXJ5_9CORY Tax_Id=585529 SubName: Full=DNA polymerase III epsilon subunit;[Corynebacterium genitalium ATCC 33030] Length = 341 Score = 107 bits (268), Expect = 2e-21 Identities = 84/318 (26%), Positives = 144/318 (45%), Gaps = 45/318 (14%) Query: 21 VETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHGLTAAMLEDQPQF 80 V+T+ P R++++ A+ D +G V + N G DPGP H+HG+ + E +F Sbjct: 24 VQTTNIHPSTGRLVTLDAVAFDDSGVVGEEFHRIFNVGGDPGPMHMHGVEPNLFERAAKF 83 Query: 81 ADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP-------------------- 120 + + L + L RTLV H+ + F Sbjct: 84 SRHLKALDKFLDARTLVVHDAPMTWGFIVSEARRAMNAAARANRSRNRRQGRRRQRVGHV 143 Query: 121 --VDSVMCTVELARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRA 178 + ++ T+ AR+ + + ++RLE++A+ G+ P + A P + + Sbjct: 144 PAPEGIVDTLATARKQGVTLIDVRLESVASASGIDAPAPDASPQRAA------RPEEETS 197 Query: 179 RERDVWLPIHPVTRRRWPNGRV---THDELRP---------LKALASRMPCPYLNPGRYV 226 RER L + + ++ NG V T DEL P ++ A + NPG++ Sbjct: 198 RERT--LVLVSLFLKQLENGEVLSRTPDELAPDRFGLQRSRIRVEAEKKQPKQGNPGQFT 255 Query: 227 CDRPLVQGMRVALAAEVGRTHEELVERILHAGLAYSDGVDRETSLVVCNEDAPDQ---GK 283 L GM V + ++ H+E+V++IL L YS+ + RETSLVV N P + GK Sbjct: 256 DKSGLRPGMEVVVTDDIQADHDEVVQKILDLDLNYSEKLSRETSLVVSNITGPPEQLRGK 315 Query: 284 GYHARQLGVPVLTDTQFM 301 HA++ +P++TDT+F+ Sbjct: 316 AMHAQRKNIPLVTDTEFL 333 >tr|A4AIB8|A4AIB8_9ACTN Tax_Id=312284 SubName: Full=DNA polymerase III subunit epsilon;[marine actinobacterium PHSC20C1] Length = 417 Score = 107 bits (266), Expect = 3e-21 Identities = 65/174 (37%), Positives = 90/174 (51%), Gaps = 3/174 (1%) Query: 13 GEGWAVVDVETSG-FRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHGLTA 71 G G+AV+D ET+G F GH RV+ VA + LDA G VE +L+NPG D GP +H + A Sbjct: 3 GPGFAVIDFETTGLFAGGHDRVVEVAVVHLDAQGTVEGRWETLVNPGRDLGPQRIHQIRA 62 Query: 72 AMLEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSV-MCTVEL 130 + + D P F I G L +LL GR LVAHN +FD F D V +CT++L Sbjct: 63 SDIVDAPAFEHIAGQLVDLLEGRVLVAHNASFDLKFLVAELERTAAWMSTDFVSLCTMQL 122 Query: 131 ARRLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVW 184 AR G + AA + + H A DA + +LA ++ ++W Sbjct: 123 AREYLPGAGRALADCCAA-LDIQLDDAHRASADAFATAQLLAAYIESEANDEIW 175 >tr|B5I2U5|B5I2U5_9ACTO Tax_Id=463191 SubName: Full=DNA polymerase III subunit epsilon; Flags: Fragment;[Streptomyces sviceus ATCC 29083] Length = 190 Score = 102 bits (255), Expect = 5e-20 Identities = 63/163 (38%), Positives = 85/163 (52%), Gaps = 8/163 (4%) Query: 146 LAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPIH---PVTR---RRWPNGR 199 LAAH+GV Q+R H A DDA VL+ P+L+ A R V LP+H P+T R P Sbjct: 15 LAAHFGVVQQRAHHALDDARVLAEAFRPSLRAAAARSVRLPLHECRPLTEWTDRAVPRQS 74 Query: 200 VTHDELRPL--KALASRMPCPYLNPGRYVCDRPLVQGMRVALAAEVGRTHEELVERILHA 257 + R + R CPY NPGRY +PL QGMR+A + + + L +R + A Sbjct: 75 AGYGGYRTTSWRPTRKRPACPYPNPGRYEDGKPLKQGMRIAFSGDTSIERDLLEDRAIEA 134 Query: 258 GLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 GL + + R TSL+V N+ K ARQ G PV+ + F Sbjct: 135 GLHVATSISRLTSLLVTNDPDSGTSKVVKARQFGTPVVDEAAF 177 >tr|C4DV08|C4DV08_9ACTO Tax_Id=446470 SubName: Full=DNA polymerase III epsilon subunit-like 3'-5' exonuclease;[Stackebrandtia nassauensis DSM 44728] Length = 410 Score = 99.4 bits (246), Expect = 5e-19 Identities = 67/195 (34%), Positives = 95/195 (48%), Gaps = 5/195 (2%) Query: 16 WAVVDVETSGFRPG-HARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHGLTAAML 74 +AV D ET+G PG H R+I +A + D G++E++ +LLNP D GP H+HG+ A + Sbjct: 2 YAVFDTETTGIIPGMHHRIIEIAVVLADDEGSIENTWSTLLNPDRDLGPQHIHGIKARQV 61 Query: 75 EDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPVDSVM--CTVELAR 132 D P+F DI G L ++L GRTLVAHN+ FD F + + CT+ + Sbjct: 62 IDAPKFGDIAGQLIQMLSGRTLVAHNLPFDLRFLSAEFERLGHQLTYNHHLGVCTMNWST 121 Query: 133 RLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPIHPVTR 192 G E A GV H A DA + +L + AR W P++R Sbjct: 122 TFLEGASRSLPECCKAA-GVQLTGWHSALSDAEATAALLKHYINAARGGVPWHDRLPLSR 180 Query: 193 R-RWPNGRVTHDELR 206 WP VT+ +R Sbjct: 181 SCTWPTVPVTNAHVR 195 >tr|C1WXR8|C1WXR8_9ACTO Tax_Id=479435 SubName: Full=DNA polymerase III epsilon subunit-like 3'-5' exonuclease;[Kribbella flavida DSM 17836] Length = 415 Score = 96.3 bits (238), Expect = 5e-18 Identities = 69/201 (34%), Positives = 93/201 (46%), Gaps = 7/201 (3%) Query: 16 WAVVDVETSGFRPGHA-RVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHGLTAAML 74 +AV+D ET+G PGH RVI +A + LD G EH V+LLNP D GP H+HG+ A + Sbjct: 2 YAVIDTETTGLLPGHRHRVIEIAVVLLDQHGRFEHEWVTLLNPQRDLGPQHIHGILTADV 61 Query: 75 EDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXPV--DSVMCTVELAR 132 P+F D+ L LL GR +V HNV FD F P+ + MCT+ LA Sbjct: 62 LAAPEFVDVARHLGALLAGRMVVGHNVEFDLGFLRAEFARLGHVVPLITERSMCTMALAG 121 Query: 133 RLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPIHPVTR 192 L G L A G++ + H A D + + A L+ W + R Sbjct: 122 YLYPG-SKRTLGACCAAAGISLQGWHSALADTRATAELFATYLRSFPSPPPWQWAYEEIR 180 Query: 193 -RRWPN--GRVTHDELRPLKA 210 WP G +RP+ A Sbjct: 181 GLPWPELPGTTFTPTVRPVHA 201 >tr|C7Q2F7|C7Q2F7_CATAD Tax_Id=479433 SubName: Full=Exonuclease RNase T and DNA polymerase III;[Catenulispora acidiphila] Length = 204 Score = 94.7 bits (234), Expect = 1e-17 Identities = 64/164 (39%), Positives = 85/164 (51%), Gaps = 2/164 (1%) Query: 15 GWAVVDVETSGFRPGHARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHGLTAAML 74 G+AVVDVETSGF+P A ++ VA + +DA G V S SLL P G T VHG+T M+ Sbjct: 11 GYAVVDVETSGFQPPIAEILEVAIVHVDATGQVTGSWDSLLRPQGGVGATRVHGITREMV 70 Query: 75 EDQPQFADIVGDLTELLRGRTLVAHNVAFDYSFXXXXXXXXXXXXP-VDSVMCTVELARR 133 E P+F D+ +L LL R +VAHN+AFD F P + CT+ ++ Sbjct: 71 EPAPRFEDVGMELHGLLVDRVVVAHNLAFDAKFLVTQFARLGVHSPEIAGGACTLRTSQA 130 Query: 134 LELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQR 177 + G L+ A GV H A DAL + +L LQR Sbjct: 131 MLPGPSYKLLDCCEA-VGVELTDAHSALGDALATARLLGFFLQR 173 >tr|A1SNC5|A1SNC5_NOCSJ Tax_Id=196162 SubName: Full=Exonuclease, RNase T and DNA polymerase III;[Nocardioides sp.] Length = 405 Score = 93.6 bits (231), Expect = 3e-17 Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 3/183 (1%) Query: 15 GWAVVDVETSGFRPG-HARVISVAALGLDAAGNVEHSVVSLLNPGVDPGPTHVHGLTAAM 73 G+ ++D+ET+G P H R++ + + + +G +E +L+NP D GPTH+HG+TA Sbjct: 3 GYTIIDLETTGLFPQKHDRIVEIGLIEVSDSGAIEREWATLVNPQRDVGPTHIHGITARD 62 Query: 74 LEDQPQFADIVGDLTELLRGRTLVAHNVAFDYSF-XXXXXXXXXXXXPVDSVMCTVELAR 132 + D P F ++ L L GRTLVAHN FD F P +CT++L+ Sbjct: 63 VLDAPTFQEVAPYLIGSLAGRTLVAHNARFDTQFLDYEFERASVGTRPPTPSLCTMQLSS 122 Query: 133 RLELGIDNLRLETLAAHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPIHPVTR 192 G +L+ V H A DA ++G+L L W + TR Sbjct: 123 SYLRGASR-KLKDCCVAANVPHADEHTALGDARAVAGLLNYYLVNTDRPVPWSAVLESTR 181 Query: 193 RRW 195 R W Sbjct: 182 RHW 184 Score = 46.2 bits (108), Expect = 0.005 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 19/171 (11%) Query: 148 AHWGVTQERPHDAFDDALVLSGILAPALQRARERDVWLPIHP-----VTRRRWPNGRVTH 202 A+ V ++ D + A + ++ AL RD +H + W +G VT Sbjct: 228 AYLDVLEQALLDGYLSAHEENALVDLALSLGLHRDHLAAVHATYLDSMAIAAWADGMVTE 287 Query: 203 DELRPLKALASRMPCPY----------LNPGRYVCDR---PLVQGMRVALAAEVGRTHEE 249 EL L ++A+ + P N + L G +V E+ ++ Sbjct: 288 TELADLTSVATALGLPTDLVRVAIKRAKNVAAHATSEGGFKLCVGDQVVFTGELSVPRDQ 347 Query: 250 LVERILHAGLAYSDGVDRETSLVVCNEDAPDQGKGYHARQLGVPVLTDTQF 300 L++ AGL + GV++ T LVV + GK AR G+PV+T+ F Sbjct: 348 LIDLAQQAGLKHG-GVNKSTKLVVAADPDSQSGKAAKARSYGIPVVTEAAF 397 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.321 0.138 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 2,506,053,984 Number of extensions: 104628101 Number of successful extensions: 224110 Number of sequences better than 10.0: 3281 Number of HSP's gapped: 223494 Number of HSP's successfully gapped: 3302 Length of query: 329 Length of database: 3,846,993,858 Length adjustment: 138 Effective length of query: 191 Effective length of database: 2,291,015,844 Effective search space: 437584026204 Effective search space used: 437584026204 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 80 (35.4 bits)