BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MMAR_5350
         (161 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,275,203 sequences; 3,846,993,858 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|B2HMI5|B2HMI5_MYCMM Tax_Id=216594 SubName: Full=Putative unch...   314   2e-84
tr|A0PWY0|A0PWY0_MYCUA Tax_Id=362242 SubName: Full=Putative unch...   312   7e-84
sp|P65096|Y3817_MYCBO Tax_Id=1765 RecName: Full=Uncharacterized ...   255   1e-66
sp|P65095|Y3788_MYCTU Tax_Id=1773 RecName: Full=Uncharacterized ...   255   1e-66
tr|C6DNN1|C6DNN1_MYCTK Tax_Id=478434 SubName: Full=Putative unch...   255   1e-66
tr|C1AIP3|C1AIP3_MYCBT Tax_Id=561275 SubName: Full=Nucleotide di...   255   1e-66
tr|A5U9B7|A5U9B7_MYCTA Tax_Id=419947 SubName: Full=Nucleoside di...   255   1e-66
tr|A1KQC2|A1KQC2_MYCBP Tax_Id=410289 SubName: Full=Putative unch...   255   1e-66
tr|A5WU08|A5WU08_MYCTF Tax_Id=336982 SubName: Full=Putative unch...   255   1e-66
tr|A4KMQ7|A4KMQ7_MYCTU Tax_Id=395095 SubName: Full=Putative unch...   255   1e-66
tr|A2VMG8|A2VMG8_MYCTU Tax_Id=348776 SubName: Full=Putative unch...   255   1e-66
tr|A0Q9D9|A0Q9D9_MYCA1 Tax_Id=243243 SubName: Full=Nucleoside di...   232   1e-59
tr|Q745N6|Q745N6_MYCPA Tax_Id=1770 SubName: Full=Putative unchar...   231   2e-59
tr|A4FHQ7|A4FHQ7_SACEN Tax_Id=405948 SubName: Full=Nucleoside di...   122   2e-26
tr|C7MX98|C7MX98_SACVD Tax_Id=471857 SubName: Full=Transcription...   107   6e-22
tr|C4DVL0|C4DVL0_9ACTO Tax_Id=446470 SubName: Full=Transcription...    84   7e-15
tr|B3W8K3|B3W8K3_LACCB Tax_Id=543734 (greA)SubName: Full=Transcr...    64   7e-09
tr|C5F6G5|C5F6G5_LACPA Tax_Id=537973 SubName: Full=Transcription...    64   7e-09
tr|Q03CI7|Q03CI7_LACC3 Tax_Id=321967 SubName: Full=Transcription...    63   9e-09
tr|A9GS65|A9GS65_SORC5 Tax_Id=448385 RecName: Full=Transcription...    63   9e-09
tr|C8P5F6|C8P5F6_9LACO Tax_Id=525309 (greA2)SubName: Full=Transc...    63   9e-09
tr|Q1AU03|Q1AU03_RUBXD Tax_Id=266117 RecName: Full=Transcription...    61   4e-08
tr|C2EUM0|C2EUM0_9LACO Tax_Id=525366 (greA)RecName: Full=Transcr...    57   7e-07
tr|B2GEQ6|B2GEQ6_LACF3 Tax_Id=334390 SubName: Full=Elongation fa...    56   1e-06
tr|D0DS69|D0DS69_LACFE Tax_Id=575599 SubName: Full=Elongation fa...    56   1e-06
tr|C0WVP4|C0WVP4_LACFE Tax_Id=525325 SubName: Full=Transcription...    56   1e-06
tr|C8W826|C8W826_ATOPD Tax_Id=521095 SubName: Full=Transcription...    55   2e-06
tr|D0R1S7|D0R1S7_LACJF Tax_Id=633699 (greA)SubName: Full=Transcr...    55   2e-06
tr|C2E8Q6|C2E8Q6_9LACO Tax_Id=525362 (greA)RecName: Full=Transcr...    55   2e-06
tr|C2E3H9|C2E3H9_LACJO Tax_Id=525330 (greA)RecName: Full=Transcr...    55   2e-06
tr|C0W7Y7|C0W7Y7_9ACTO Tax_Id=525246 (greA)SubName: Full=Transcr...    55   2e-06
tr|A6STV7|A6STV7_JANMA Tax_Id=375286 (greB1)SubName: Full=Transc...    55   3e-06
tr|A2SJD8|A2SJD8_METPP Tax_Id=420662 SubName: Full=Transcription...    55   3e-06
tr|D0L7P3|D0L7P3_GORB4 Tax_Id=526226 SubName: Full=Transcription...    55   3e-06
sp|Q88ZS9|GREA1_LACPL Tax_Id=1590 (greA1)RecName: Full=Transcrip...    54   4e-06
tr|A8L166|A8L166_FRASN Tax_Id=298653 RecName: Full=Transcription...    54   4e-06
tr|Q0RCI8|Q0RCI8_FRAAA Tax_Id=326424 (greA)RecName: Full=Transcr...    54   6e-06
tr|B1H062|B1H062_UNCTG Tax_Id=471821 RecName: Full=Transcription...    54   6e-06
tr|B3XLN9|B3XLN9_LACRE Tax_Id=349123 RecName: Full=Transcription...    54   6e-06
tr|B2G9Q3|B2G9Q3_LACRJ Tax_Id=557433 SubName: Full=Transcription...    54   7e-06
tr|A5VME9|A5VME9_LACRD Tax_Id=557436 SubName: Full=Transcription...    54   7e-06
tr|A4G183|A4G183_HERAR Tax_Id=204773 SubName: Full=Putative tran...    54   7e-06
tr|C6VJG0|C6VJG0_LACPJ Tax_Id=644042 (greA)SubName: Full=Transcr...    54   7e-06
tr|C2FQV3|C2FQV3_LACPL Tax_Id=525338 (greA)SubName: Full=Transcr...    54   7e-06
tr|C2F6Q2|C2F6Q2_LACRE Tax_Id=548485 (greA)SubName: Full=Transcr...    54   7e-06
tr|C0YZ53|C0YZ53_LACRE Tax_Id=585517 (greA)SubName: Full=Transcr...    54   7e-06
tr|Q74LK5|Q74LK5_LACJO Tax_Id=33959 RecName: Full=Transcription ...    53   1e-05
tr|Q5FMH3|Q5FMH3_LACAC Tax_Id=1579 (greA)RecName: Full=Transcrip...    53   1e-05
tr|Q04CB1|Q04CB1_LACDB Tax_Id=321956 SubName: Full=Transcription...    53   1e-05
tr|C2EF90|C2EF90_9LACO Tax_Id=525364 (greA-1)RecName: Full=Trans...    53   1e-05

>tr|B2HMI5|B2HMI5_MYCMM Tax_Id=216594 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium marinum]
          Length = 161

 Score =  314 bits (805), Expect = 2e-84
 Identities = 160/161 (99%), Positives = 161/161 (100%)

Query: 1   VSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA 60
           +SEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA
Sbjct: 1   MSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA 60

Query: 61  VLTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYE 120
           VLTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYE
Sbjct: 61  VLTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYE 120

Query: 121 TLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT 161
           TLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT
Sbjct: 121 TLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT 161


>tr|A0PWY0|A0PWY0_MYCUA Tax_Id=362242 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium ulcerans]
          Length = 161

 Score =  312 bits (800), Expect = 7e-84
 Identities = 159/161 (98%), Positives = 160/161 (99%)

Query: 1   VSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA 60
           +SEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADEL 
Sbjct: 1   MSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELP 60

Query: 61  VLTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYE 120
           VLTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYE
Sbjct: 61  VLTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYE 120

Query: 121 TLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT 161
           TLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT
Sbjct: 121 TLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT 161


>sp|P65096|Y3817_MYCBO Tax_Id=1765 RecName: Full=Uncharacterized
           protein Mb3817;[Mycobacterium bovis]
          Length = 161

 Score =  255 bits (652), Expect = 1e-66
 Identities = 127/161 (78%), Positives = 147/161 (91%)

Query: 1   VSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA 60
           +SE+V+S GLA+AARD+LAAELARLRQR DRLE+EVKNDRGMIGDHGDAAEAIQRADELA
Sbjct: 1   MSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60

Query: 61  VLTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYE 120
           +L +RI+ELDRRL+ GP+  +GSETLP GTEVTLRF DGEVVTMHVI++VEE PVG E E
Sbjct: 61  ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120

Query: 121 TLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT 161
           TLTA SPLGQALAG Q GDTVTYSTP+GP+QV+LL++KLP+
Sbjct: 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161


>sp|P65095|Y3788_MYCTU Tax_Id=1773 RecName: Full=Uncharacterized
           protein Rv3788/MT3896;[Mycobacterium tuberculosis]
          Length = 161

 Score =  255 bits (652), Expect = 1e-66
 Identities = 127/161 (78%), Positives = 147/161 (91%)

Query: 1   VSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA 60
           +SE+V+S GLA+AARD+LAAELARLRQR DRLE+EVKNDRGMIGDHGDAAEAIQRADELA
Sbjct: 1   MSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60

Query: 61  VLTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYE 120
           +L +RI+ELDRRL+ GP+  +GSETLP GTEVTLRF DGEVVTMHVI++VEE PVG E E
Sbjct: 61  ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120

Query: 121 TLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT 161
           TLTA SPLGQALAG Q GDTVTYSTP+GP+QV+LL++KLP+
Sbjct: 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161


>tr|C6DNN1|C6DNN1_MYCTK Tax_Id=478434 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium tuberculosis]
          Length = 161

 Score =  255 bits (652), Expect = 1e-66
 Identities = 127/161 (78%), Positives = 147/161 (91%)

Query: 1   VSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA 60
           +SE+V+S GLA+AARD+LAAELARLRQR DRLE+EVKNDRGMIGDHGDAAEAIQRADELA
Sbjct: 1   MSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60

Query: 61  VLTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYE 120
           +L +RI+ELDRRL+ GP+  +GSETLP GTEVTLRF DGEVVTMHVI++VEE PVG E E
Sbjct: 61  ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120

Query: 121 TLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT 161
           TLTA SPLGQALAG Q GDTVTYSTP+GP+QV+LL++KLP+
Sbjct: 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161


>tr|C1AIP3|C1AIP3_MYCBT Tax_Id=561275 SubName: Full=Nucleotide
           diphosphate kinase regulator;[Mycobacterium bovis]
          Length = 161

 Score =  255 bits (652), Expect = 1e-66
 Identities = 127/161 (78%), Positives = 147/161 (91%)

Query: 1   VSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA 60
           +SE+V+S GLA+AARD+LAAELARLRQR DRLE+EVKNDRGMIGDHGDAAEAIQRADELA
Sbjct: 1   MSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60

Query: 61  VLTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYE 120
           +L +RI+ELDRRL+ GP+  +GSETLP GTEVTLRF DGEVVTMHVI++VEE PVG E E
Sbjct: 61  ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120

Query: 121 TLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT 161
           TLTA SPLGQALAG Q GDTVTYSTP+GP+QV+LL++KLP+
Sbjct: 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161


>tr|A5U9B7|A5U9B7_MYCTA Tax_Id=419947 SubName: Full=Nucleoside
           diphosphate kinase regulator;[Mycobacterium
           tuberculosis]
          Length = 161

 Score =  255 bits (652), Expect = 1e-66
 Identities = 127/161 (78%), Positives = 147/161 (91%)

Query: 1   VSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA 60
           +SE+V+S GLA+AARD+LAAELARLRQR DRLE+EVKNDRGMIGDHGDAAEAIQRADELA
Sbjct: 1   MSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60

Query: 61  VLTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYE 120
           +L +RI+ELDRRL+ GP+  +GSETLP GTEVTLRF DGEVVTMHVI++VEE PVG E E
Sbjct: 61  ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120

Query: 121 TLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT 161
           TLTA SPLGQALAG Q GDTVTYSTP+GP+QV+LL++KLP+
Sbjct: 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161


>tr|A1KQC2|A1KQC2_MYCBP Tax_Id=410289 SubName: Full=Putative
           uncharacterized protein BCG_3850;[Mycobacterium bovis]
          Length = 161

 Score =  255 bits (652), Expect = 1e-66
 Identities = 127/161 (78%), Positives = 147/161 (91%)

Query: 1   VSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA 60
           +SE+V+S GLA+AARD+LAAELARLRQR DRLE+EVKNDRGMIGDHGDAAEAIQRADELA
Sbjct: 1   MSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60

Query: 61  VLTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYE 120
           +L +RI+ELDRRL+ GP+  +GSETLP GTEVTLRF DGEVVTMHVI++VEE PVG E E
Sbjct: 61  ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120

Query: 121 TLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT 161
           TLTA SPLGQALAG Q GDTVTYSTP+GP+QV+LL++KLP+
Sbjct: 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161


>tr|A5WU08|A5WU08_MYCTF Tax_Id=336982 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium tuberculosis]
          Length = 161

 Score =  255 bits (652), Expect = 1e-66
 Identities = 127/161 (78%), Positives = 147/161 (91%)

Query: 1   VSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA 60
           +SE+V+S GLA+AARD+LAAELARLRQR DRLE+EVKNDRGMIGDHGDAAEAIQRADELA
Sbjct: 1   MSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60

Query: 61  VLTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYE 120
           +L +RI+ELDRRL+ GP+  +GSETLP GTEVTLRF DGEVVTMHVI++VEE PVG E E
Sbjct: 61  ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120

Query: 121 TLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT 161
           TLTA SPLGQALAG Q GDTVTYSTP+GP+QV+LL++KLP+
Sbjct: 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161


>tr|A4KMQ7|A4KMQ7_MYCTU Tax_Id=395095 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium tuberculosis str.
           Haarlem]
          Length = 161

 Score =  255 bits (652), Expect = 1e-66
 Identities = 127/161 (78%), Positives = 147/161 (91%)

Query: 1   VSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA 60
           +SE+V+S GLA+AARD+LAAELARLRQR DRLE+EVKNDRGMIGDHGDAAEAIQRADELA
Sbjct: 1   MSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60

Query: 61  VLTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYE 120
           +L +RI+ELDRRL+ GP+  +GSETLP GTEVTLRF DGEVVTMHVI++VEE PVG E E
Sbjct: 61  ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120

Query: 121 TLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT 161
           TLTA SPLGQALAG Q GDTVTYSTP+GP+QV+LL++KLP+
Sbjct: 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161


>tr|A2VMG8|A2VMG8_MYCTU Tax_Id=348776 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium tuberculosis C]
          Length = 161

 Score =  255 bits (652), Expect = 1e-66
 Identities = 127/161 (78%), Positives = 147/161 (91%)

Query: 1   VSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA 60
           +SE+V+S GLA+AARD+LAAELARLRQR DRLE+EVKNDRGMIGDHGDAAEAIQRADELA
Sbjct: 1   MSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60

Query: 61  VLTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYE 120
           +L +RI+ELDRRL+ GP+  +GSETLP GTEVTLRF DGEVVTMHVI++VEE PVG E E
Sbjct: 61  ILGDRINELDRRLRTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVGREAE 120

Query: 121 TLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT 161
           TLTA SPLGQALAG Q GDTVTYSTP+GP+QV+LL++KLP+
Sbjct: 121 TLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVKLPS 161


>tr|A0Q9D9|A0Q9D9_MYCA1 Tax_Id=243243 SubName: Full=Nucleoside
           diphosphate kinase regulator;[Mycobacterium avium]
          Length = 158

 Score =  232 bits (591), Expect = 1e-59
 Identities = 120/155 (77%), Positives = 133/155 (85%), Gaps = 2/155 (1%)

Query: 6   QSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTER 65
           QSP  A+AAR NL AEL RLRQR DRLE+EVKNDRGM+GDHGDAAEAIQRADEL VL++R
Sbjct: 6   QSP--ADAARKNLEAELDRLRQRRDRLEVEVKNDRGMVGDHGDAAEAIQRADELVVLSDR 63

Query: 66  IHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETLTAH 125
           I+ELDRRL+AGP +A  S TLP GTEVTLRF DGEVVTMHVI+IVEE PVG E ETLTA 
Sbjct: 64  INELDRRLRAGPPDADTSATLPGGTEVTLRFADGEVVTMHVISIVEETPVGREGETLTAR 123

Query: 126 SPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLP 160
           SPL QALAGRQ GDTVTY TP+G  QVEL+++KLP
Sbjct: 124 SPLAQALAGRQPGDTVTYPTPQGEKQVELIAVKLP 158


>tr|Q745N6|Q745N6_MYCPA Tax_Id=1770 SubName: Full=Putative
           uncharacterized protein;[Mycobacterium paratuberculosis]
          Length = 158

 Score =  231 bits (590), Expect = 2e-59
 Identities = 119/155 (76%), Positives = 133/155 (85%), Gaps = 2/155 (1%)

Query: 6   QSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTER 65
           QSP  A+AAR NL AEL RLRQR DRLE+EVKNDRGM+GDHGDAAEAIQRADEL VL++R
Sbjct: 6   QSP--ADAARKNLEAELDRLRQRRDRLEVEVKNDRGMVGDHGDAAEAIQRADELVVLSDR 63

Query: 66  IHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETLTAH 125
           I+ELDRRL+AGP ++  S TLP GTEVTLRF DGEVVTMHVI+IVEE PVG E ETLTA 
Sbjct: 64  INELDRRLRAGPPDSDASATLPGGTEVTLRFADGEVVTMHVISIVEETPVGREGETLTAR 123

Query: 126 SPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLP 160
           SPL QALAGRQ GDTVTY TP+G  QVEL+++KLP
Sbjct: 124 SPLAQALAGRQPGDTVTYPTPQGEKQVELIAVKLP 158


>tr|A4FHQ7|A4FHQ7_SACEN Tax_Id=405948 SubName: Full=Nucleoside
           diphosphate kinase regulator;[Saccharopolyspora
           erythraea]
          Length = 162

 Score =  122 bits (305), Expect = 2e-26
 Identities = 72/155 (46%), Positives = 94/155 (60%), Gaps = 2/155 (1%)

Query: 8   PGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIH 67
           P L   AR  L  E   LR +   L  E+ + R  +GD GD + A++ ADELA   +RI 
Sbjct: 6   PDLPPEARARLEEEARSLRAQRRHLAEEL-SQRDPVGDRGDDSLALEGADELAWYDDRIA 64

Query: 68  ELDRRLKA-GPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETLTAHS 126
            L+RRL   G     G+E LP GTEV +RF+DG V  + V+ I EE P G E +T+T+ S
Sbjct: 65  ALERRLTGRGRRAGQGAEGLPPGTEVRVRFEDGTVQELRVVGIPEEVPEGEEDQTMTSDS 124

Query: 127 PLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLPT 161
           PL  ALAG  AG  VTYSTP GP++V LL ++LP+
Sbjct: 125 PLALALAGGSAGTDVTYSTPDGPARVHLLDVRLPS 159


>tr|C7MX98|C7MX98_SACVD Tax_Id=471857 SubName: Full=Transcription
           elongation factor;[Saccharomonospora viridis]
          Length = 154

 Score =  107 bits (266), Expect = 6e-22
 Identities = 65/154 (42%), Positives = 91/154 (59%), Gaps = 4/154 (2%)

Query: 7   SPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERI 66
           +PGL+ A R  L  EL +LR++  R E+  +     +GD  D A+ ++R++ ++ L  RI
Sbjct: 4   TPGLSPATRSRLERELEQLRKQ--RAELLPRLGEDPLGDSADQADLVERSEVVSRLDRRI 61

Query: 67  HELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETLTAHS 126
           +E+   L  G  +      LPSGT+VTLRFDDG V  M V+ +  E     +  TLTA S
Sbjct: 62  NEVVDLLH-GQISTESEGGLPSGTKVTLRFDDGSVEDMVVVGVAAEADED-DTSTLTADS 119

Query: 127 PLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLP 160
           PLGQALAG Q GDTVTY TP+G    E++ +  P
Sbjct: 120 PLGQALAGHQEGDTVTYRTPKGEVTAEIVKLTPP 153


>tr|C4DVL0|C4DVL0_9ACTO Tax_Id=446470 SubName: Full=Transcription
           elongation factor;[Stackebrandtia nassauensis DSM 44728]
          Length = 152

 Score = 83.6 bits (205), Expect = 7e-15
 Identities = 51/144 (35%), Positives = 79/144 (54%), Gaps = 6/144 (4%)

Query: 6   QSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTER 65
           +S  +   AR  L  +LA +R   DR+   +  D    GD  D A+ +QR  +L +L  R
Sbjct: 4   KSAPIGANARHTLEQDLAEVRAERDRVAATL-TDTDTTGDSADQAQELQRVTDLQLLDAR 62

Query: 66  IHELDRRLKAGPSNATG-SETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETLTA 124
           + +L  RL A  +   G ++ +  G+ VT+RF D    T+H+  I + +    +   +TA
Sbjct: 63  VEKLTARLDASATATQGRTDLVDVGSTVTIRFSDDTTETLHIGEIADVD----DQLLVTA 118

Query: 125 HSPLGQALAGRQAGDTVTYSTPRG 148
            SPLG+AL G +AGDTV+Y+TP G
Sbjct: 119 GSPLGRALLGHRAGDTVSYNTPSG 142


>tr|B3W8K3|B3W8K3_LACCB Tax_Id=543734 (greA)SubName:
           Full=Transcription elongation factor;[Lactobacillus
           casei]
          Length = 155

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 9/143 (6%)

Query: 22  LARLRQRHDRLEI----EVKN--DRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLK- 74
           LA L+Q  + L+     ++KN  D   +GD  + AE      EL  L  R+  LD+ ++ 
Sbjct: 12  LANLKQEVEDLKTIRPAKIKNLADAAALGDRSENAEYSAAKRELRQLEGRLRYLDKLIRY 71

Query: 75  AGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAG 134
           A  ++   S+    G  +TL+FDD E    + +    E  +G +   L  +SPLG A+  
Sbjct: 72  AKVTHPAASDIADIGNRITLKFDDDEDQATYELVGPAEAGMGQD--KLAINSPLGAAIRQ 129

Query: 135 RQAGDTVTYSTPRGPSQVELLSI 157
             AGDTVT + P G  QV L++I
Sbjct: 130 HHAGDTVTVTAPSGSYQVTLMNI 152


>tr|C5F6G5|C5F6G5_LACPA Tax_Id=537973 SubName: Full=Transcription
           elongation factor greA 1;[Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 155

 Score = 63.5 bits (153), Expect = 7e-09
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 9/143 (6%)

Query: 22  LARLRQRHDRLEI----EVKN--DRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLK- 74
           LA L+Q  + L+     ++KN  D   +GD  + AE      EL  L  R+  LD+ ++ 
Sbjct: 12  LANLKQEVEDLKTIRPAKIKNLADAAALGDRSENAEYSAAKRELRQLEGRLRYLDKLIRY 71

Query: 75  AGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAG 134
           A  ++   S+    G  +TL+FDD E    + +    E  +G +   L  +SPLG A+  
Sbjct: 72  AKVTHPAASDIADIGNRITLKFDDDEDQATYELVGPAEAGMGQD--KLAINSPLGAAIRQ 129

Query: 135 RQAGDTVTYSTPRGPSQVELLSI 157
             AGDTVT + P G  QV L++I
Sbjct: 130 HHAGDTVTVTAPSGSYQVTLMNI 152


>tr|Q03CI7|Q03CI7_LACC3 Tax_Id=321967 SubName: Full=Transcription
           elongation factor GreA;[Lactobacillus casei]
          Length = 155

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 9/143 (6%)

Query: 22  LARLRQRHDRLEI----EVKN--DRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLK- 74
           LA L+Q  + L+     ++KN  D   +GD  + AE      EL  L  R+  LD+ ++ 
Sbjct: 12  LANLKQEVEDLKTIRPAKIKNLADAAALGDRSENAEYSAAKRELRQLEGRLRYLDKLIRY 71

Query: 75  AGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAG 134
           A  ++   S+    G  +TL+FDD E    + +    E  +G +   L  +SPLG A+  
Sbjct: 72  AKVTHPAASDIADIGNRITLKFDDDEDHATYELVGPAEAGMGQD--KLAINSPLGAAIRQ 129

Query: 135 RQAGDTVTYSTPRGPSQVELLSI 157
             AGDTVT + P G  QV L++I
Sbjct: 130 HHAGDTVTVTAPSGSYQVTLMNI 152


>tr|A9GS65|A9GS65_SORC5 Tax_Id=448385 RecName: Full=Transcription
           elongation factor;[Sorangium cellulosum]
          Length = 157

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 8/145 (5%)

Query: 18  LAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLKAG- 76
           L+ ELARLR       ++   D    GD  + AE I    +L  +  R+H L +RL+   
Sbjct: 15  LSEELARLRSVERPRVVQEVADAAAQGDRSENAEYIYGKKKLREIDRRMHYLTKRLEKAV 74

Query: 77  ---PSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALA 133
              PS   G +    G  V +  +DG   T  ++    E+ +      ++  SP+G++L 
Sbjct: 75  VVDPSEQRGDKVF-FGATVEIEDEDGARRTYQIVG---EDEIDSAAGRISWRSPVGRSLL 130

Query: 134 GRQAGDTVTYSTPRGPSQVELLSIK 158
           G++AGD +T   P G +++EL+S++
Sbjct: 131 GKRAGDVITVRRPAGEAEMELISVR 155


>tr|C8P5F6|C8P5F6_9LACO Tax_Id=525309 (greA2)SubName:
           Full=Transcription elongation factor GreA
           1;[Lactobacillus antri DSM 16041]
          Length = 168

 Score = 63.2 bits (152), Expect = 9e-09
 Identities = 50/152 (32%), Positives = 80/152 (52%), Gaps = 6/152 (3%)

Query: 10  LAEAARDNLAAELARLR-QRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHE 68
           +  A    +  E+ARL+ QR  ++E ++K  R + GD  +  E      EL  L  R+  
Sbjct: 18  MTRAGYQEIEDEIARLQAQRPAKIE-QLKAARAL-GDLSENTEYSTAKRELRHLESRLRY 75

Query: 69  LDRRLKAGPSNA-TGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETLTAHSP 127
           L+++L+     A T + T+  GT VTLRF+D + V  + I   +E  +  +   +   SP
Sbjct: 76  LNKQLQYAEIIAPTNAGTVDLGTSVTLRFEDDDDVATYRIVGKQEADLAKQ--KVAFDSP 133

Query: 128 LGQALAGRQAGDTVTYSTPRGPSQVELLSIKL 159
           LGQA+  ++AG TVT   P+ P QV ++ I L
Sbjct: 134 LGQAIMHQRAGTTVTVQAPQAPYQVTIIKIAL 165


>tr|Q1AU03|Q1AU03_RUBXD Tax_Id=266117 RecName: Full=Transcription
           elongation factor;[Rubrobacter xylanophilus]
          Length = 154

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 8/120 (6%)

Query: 44  GDHGDAAEAIQRADELAVLTERIHELDRRLK----AGPSNATGSETLPSGTEVTLRF-DD 98
           GD  + +E     +E  +L  RI EL RRL+      P+++     +  GT VTLR   D
Sbjct: 35  GDISENSEYDDAKNEQGLLERRISELQRRLRNAKIVDPASSAEEGAVDLGTRVTLRVVGD 94

Query: 99  GEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIK 158
           G   T  ++   E +P   +   L+  SP+G+AL  R+ G+ V  STPRG ++ E++S++
Sbjct: 95  GRERTFQIVGANEADPASGK---LSHASPVGKALLRRRVGEKVRVSTPRGATEYEIVSVE 151


>tr|C2EUM0|C2EUM0_9LACO Tax_Id=525366 (greA)RecName:
           Full=Transcription elongation factor;[Lactobacillus
           vaginalis ATCC 49540]
          Length = 172

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 6/141 (4%)

Query: 21  ELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLK-AGPSN 79
           E+ +L+ +      ++K  R + GD  +  E      EL  L  R+  L+++L+ A    
Sbjct: 29  EIEKLQAQRPAKIAQLKAARAL-GDLSENTEYSTAKRELRHLESRLRYLNKQLQYAEIIK 87

Query: 80  ATGSETLPSGTEVTLRF-DDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAG 138
            T S+T+  GT VTL+F DD E V      IV +     + + ++  SPLGQAL  ++ G
Sbjct: 88  PTDSQTIDLGTTVTLQFIDDDEQVNY---TIVGKQEADLQKQKISFDSPLGQALLHQKVG 144

Query: 139 DTVTYSTPRGPSQVELLSIKL 159
            TV+   P+   QV++L+++L
Sbjct: 145 QTVSVQAPQSTYQVKILAVRL 165


>tr|B2GEQ6|B2GEQ6_LACF3 Tax_Id=334390 SubName: Full=Elongation
           factor GreA;[Lactobacillus fermentum]
          Length = 160

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 3/141 (2%)

Query: 21  ELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLK-AGPSN 79
           ++  L+Q+   L   +K  R + GD  +  E      EL  L  R+  LD++L  A   +
Sbjct: 20  QIEALKQKRPTLITRLKAARAL-GDLSENTEYSTAKRELRHLESRLRYLDKQLTYAKVID 78

Query: 80  ATGSETLPSGTEVTLRF-DDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAG 138
            +    +  G  VT+RF DD E  T  ++   +        E L   SPLG AL G  AG
Sbjct: 79  VSDDGKVALGKVVTIRFLDDQEEATYQIVGRHQAEQASLTEEVLAFDSPLGLALKGHTAG 138

Query: 139 DTVTYSTPRGPSQVELLSIKL 159
            TVT   P    QV ++++K+
Sbjct: 139 TTVTVHAPAASYQVTIITVKV 159


>tr|D0DS69|D0DS69_LACFE Tax_Id=575599 SubName: Full=Elongation
           factor GreA;[Lactobacillus fermentum 28-3-CHN]
          Length = 160

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 3/141 (2%)

Query: 21  ELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLK-AGPSN 79
           ++  L+Q+   L   +K  R + GD  +  E      EL  L  R+  LD++L  A   +
Sbjct: 20  QIEALKQKRPTLITRLKAARAL-GDLSENTEYSTAKRELRHLESRLRYLDKQLTYAKVID 78

Query: 80  ATGSETLPSGTEVTLRF-DDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAG 138
            +    +  G  VT+RF DD E  T  ++   +        E L   SPLG AL G  AG
Sbjct: 79  VSDDGKVALGKVVTIRFLDDQEEATYQIVGRHQAEQASLTEEVLAFDSPLGLALKGHTAG 138

Query: 139 DTVTYSTPRGPSQVELLSIKL 159
            TVT   P    QV ++++K+
Sbjct: 139 TTVTVHAPAASYQVTIITVKV 159


>tr|C0WVP4|C0WVP4_LACFE Tax_Id=525325 SubName: Full=Transcription
           elongation factor;[Lactobacillus fermentum ATCC 14931]
          Length = 160

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 3/141 (2%)

Query: 21  ELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLK-AGPSN 79
           ++  L+Q+   L   +K  R + GD  +  E      EL  L  R+  LD++L  A   +
Sbjct: 20  QIEALKQKRPTLITRLKAARAL-GDLSENTEYSTAKRELRHLESRLRYLDKQLTYAKVID 78

Query: 80  ATGSETLPSGTEVTLRF-DDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAG 138
            +    +  G  VT+RF DD E  T  ++   +        E L   SPLG AL G  AG
Sbjct: 79  VSDDGKVALGKVVTIRFLDDQEEATYQIVGRHQAEQASLTEEVLAFDSPLGLALKGHTAG 138

Query: 139 DTVTYSTPRGPSQVELLSIKL 159
            TVT   P    QV ++++K+
Sbjct: 139 TTVTVHAPAASYQVTIITVKV 159


>tr|C8W826|C8W826_ATOPD Tax_Id=521095 SubName: Full=Transcription
           elongation factor GreA;[Atopobium parvulum]
          Length = 159

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 8/143 (5%)

Query: 10  LAEAARDNLAAELA-RLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHE 68
           L    R  L  ELA R  ++HD +   +K  RG  GD  + +E     +E +    RI+E
Sbjct: 9   LTPEGRQKLVDELAYREGEKHDEIVERIKEARGF-GDLSENSEYDAAKEEQSHNESRINE 67

Query: 69  LDRRLKAGPSNATGSE---TLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETLTAH 125
           + + L        GS+   T+  GT V L    G+     ++   E N + H+   ++  
Sbjct: 68  IRQILSVAKVVEGGSKRKVTVAIGTTVELADAKGKTTKYVIVGTTETNSLEHK---ISNE 124

Query: 126 SPLGQALAGRQAGDTVTYSTPRG 148
           SP G+AL G + GD V ++TP G
Sbjct: 125 SPAGEALIGHKKGDEVEFTTPNG 147


>tr|D0R1S7|D0R1S7_LACJF Tax_Id=633699 (greA)SubName:
           Full=Transcription elongation factor greA;[Lactobacillus
           johnsonii]
          Length = 153

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 6/139 (4%)

Query: 21  ELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLKAGPS-N 79
           E+ARL++   R  I++  +   +GD  + +E      EL  L  R+  LD++L+      
Sbjct: 18  EIARLKKDRPR-RIKILQEARSMGDLSENSEYTTAKMELGHLQSRLRYLDKQLRYSEIIQ 76

Query: 80  ATGSETLPSGTEVTLRFD-DGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAG 138
              S T+  G+ VTL FD D E     ++  +E +    +   ++  SPLGQAL  ++AG
Sbjct: 77  KDESGTIDLGSNVTLLFDGDDEAEKYRIVGRMEADLAKGK---ISFDSPLGQALMKKKAG 133

Query: 139 DTVTYSTPRGPSQVELLSI 157
            TVT   P G   V+++++
Sbjct: 134 ATVTVEAPAGSYDVKIIAV 152


>tr|C2E8Q6|C2E8Q6_9LACO Tax_Id=525362 (greA)RecName:
           Full=Transcription elongation factor;[Lactobacillus
           ruminis ATCC 25644]
          Length = 157

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 7/161 (4%)

Query: 1   VSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA 60
           ++EE   P   E  ++ L  EL  L+       IE        GD  + +E     +E +
Sbjct: 1   MAEEKTFPMTLEG-KEKLEKELEELKTTKRAEIIERIKIARSFGDLSENSEYEAAKNEQS 59

Query: 61  VLTERIHELDRRLKAGP---SNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGH 117
           +L  RI E+   L       + A   + +  G  VT + +D E  T  ++   E +P   
Sbjct: 60  ILEGRIKEVTNMLNHAEIIDNGAIAEDEVAIGKTVTFQEEDDEPETYQIVGAAESDPFNG 119

Query: 118 EYETLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIK 158
           +   ++  SP+ + L G + G+TVT  TP G  QV+++S++
Sbjct: 120 K---ISNESPIAKGLVGHKVGETVTVETPGGDMQVKIISVE 157


>tr|C2E3H9|C2E3H9_LACJO Tax_Id=525330 (greA)RecName:
           Full=Transcription elongation factor;[Lactobacillus
           johnsonii ATCC 33200]
          Length = 153

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 6/139 (4%)

Query: 21  ELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLKAGPS-N 79
           E+ARL++   R  I++  +   +GD  + +E      EL  L  R+  LD++L+      
Sbjct: 18  EIARLKKDRPR-RIKILQEARSMGDLSENSEYTTAKMELGHLQSRLRYLDKQLRYSEIIQ 76

Query: 80  ATGSETLPSGTEVTLRFD-DGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAG 138
              S T+  G+ VTL FD D E     ++  +E +    +   ++  SPLGQAL  ++AG
Sbjct: 77  KDESGTIDLGSNVTLLFDGDDEAEKYRIVGRMEADLAKGK---ISFDSPLGQALMKKKAG 133

Query: 139 DTVTYSTPRGPSQVELLSI 157
            TVT   P G   V+++++
Sbjct: 134 ATVTVEAPAGSYDVKIIAV 152


>tr|C0W7Y7|C0W7Y7_9ACTO Tax_Id=525246 (greA)SubName:
           Full=Transcription elongation factor GreA;[Actinomyces
           urogenitalis DSM 15434]
          Length = 165

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 52/158 (32%), Positives = 76/158 (48%), Gaps = 7/158 (4%)

Query: 6   QSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRG-MIGDHGDAAEAIQRADELAVLTE 64
           Q   L + A D L AELAR RQ  DR EI  + +     GD  + A      +E A+   
Sbjct: 10  QGTWLTKDAYDRLTAELAR-RQEVDRKEIAQRVEAARQEGDLRENAGYHAAREEAALNEA 68

Query: 65  RIHELDRRL-KAGPSNATGSETLPSGTEVTLRFDDGE-VVTMHVIAIVEENPVGHEYETL 122
           RI +L   L KA         T+ +GT VT +    E V  +    I  + P G   +  
Sbjct: 69  RIAQLTELLEKAEIGEVADDGTVSAGTIVTAKIGAKEQVFALGGQEITADVPEG--VKVF 126

Query: 123 TAHSPLGQALAGRQAGDTVTYSTPRGPS-QVELLSIKL 159
           +  +PLG+AL G +AG+TV+Y  P G   + E++ +K+
Sbjct: 127 SPDAPLGKALMGHKAGETVSYQAPNGKEIKAEIIDVKV 164


>tr|A6STV7|A6STV7_JANMA Tax_Id=375286 (greB1)SubName:
           Full=Transcription elongation factor
           GreB;[Janthinobacterium sp.]
          Length = 175

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 7/157 (4%)

Query: 8   PGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIH 67
           P +    R+ +  +  R  Q+  +  ++V     M  D  D A A  +   L  + +RIH
Sbjct: 19  PEMPVGVRNYITPDGYRHLQQELQQLLDVARPAAMQMDAADTAMASAQEASLREIEQRIH 78

Query: 68  ELDRRLKAGP----SNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETLT 123
            L  R+++      S     + +  G  V      GE  T  ++ + E +P       L 
Sbjct: 79  YLQTRVESAEVVDASVHADGDRIFFGASVDYENTAGETHTATIVGLDELDPAQGRISWL- 137

Query: 124 AHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLP 160
             SPL Q+L G + GDTV   TP GP ++ +L+++ P
Sbjct: 138 --SPLAQSLLGAEEGDTVLLQTPAGPEELHVLTVRYP 172


>tr|A2SJD8|A2SJD8_METPP Tax_Id=420662 SubName: Full=Transcription
           elongation factor;[Methylibium petroleiphilum]
          Length = 213

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 15/170 (8%)

Query: 3   EEVQSPGLAEAARD--------NLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQ 54
           +E++ P L   +++         L AEL +L        +E  +     GD  +  + + 
Sbjct: 43  DELELPALPAGSKNYITPAGFARLRAELMQLLDDERPKVVETVSWAAKNGDRSENGDYLY 102

Query: 55  RADELAVLTERIHELDRRLK----AGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIV 110
               L  +  RI  L +RL+    A PS   GS+ +  G  VT    DG   T+ +  I 
Sbjct: 103 GKKRLREIDRRIRFLTKRLEIAEVADPSVHRGSDQVFFGATVTYAAPDGVERTITIKGID 162

Query: 111 EENPVGHEYETLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIKLP 160
           E + +  E   +   SP+ +AL   + GD VT  TP+GP  +E++ ++ P
Sbjct: 163 EADNLQAEVSWI---SPVARALLKARVGDEVTLLTPQGPQTIEVIEVRYP 209


>tr|D0L7P3|D0L7P3_GORB4 Tax_Id=526226 SubName: Full=Transcription
           elongation factor GreA;[Gordonia bronchialis]
          Length = 164

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 5/157 (3%)

Query: 4   EVQSPGLAEAARDNLAAELARLRQRHDRL--EIEVKNDRGMIGDHGDAAEAIQRADELAV 61
           + Q   L + + D L  EL  L      +  EI  + + G + ++G    A +   +   
Sbjct: 3   DTQVTWLTQESHDRLKGELDSLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQEA 62

Query: 62  LTERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVT-MHVIAIVEENPVGHEYE 120
              ++ EL    K G +       LP G+ VT+ +D  E  T   +IA  EE   G + E
Sbjct: 63  RIRQLQELLNNAKVGEAPTQSGVALP-GSVVTVYYDGDEKDTETFLIATREEGAQGGDLE 121

Query: 121 TLTAHSPLGQALAGRQAGDTVTYSTPRGPS-QVELLS 156
           T +  SPLG AL   + G+T  YS P G + +V L+S
Sbjct: 122 TYSPSSPLGSALIDAKVGETREYSVPSGATVKVTLVS 158


>sp|Q88ZS9|GREA1_LACPL Tax_Id=1590 (greA1)RecName:
           Full=Transcription elongation factor greA 1; AltName:
           Full=Transcript cleavage factor greA 1;[Lactobacillus
           plantarum]
          Length = 156

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 7/135 (5%)

Query: 26  RQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLK-AGPSNATGSE 84
           +QR +R+ I        +GD  + AE      +L  L  R+  L+++L+ A       ++
Sbjct: 25  QQRPERIRILAA--AAALGDRSENAEYSSAKRDLGRLESRLRYLNKQLQYAQIVQPADND 82

Query: 85  TLPSGTEVTLRF-DDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAGDTVTY 143
            L  G  VT+ F DD + +T  ++   E N    E + ++  SP+GQALA     D VT 
Sbjct: 83  QLDIGKFVTIEFLDDHDQITYQLVGKQEANL---EQQKISFTSPIGQALANHTVDDVVTV 139

Query: 144 STPRGPSQVELLSIK 158
           + P G  QV+++++K
Sbjct: 140 NAPNGAYQVKVIAVK 154


>tr|A8L166|A8L166_FRASN Tax_Id=298653 RecName: Full=Transcription
           elongation factor;[Frankia sp.]
          Length = 161

 Score = 54.3 bits (129), Expect = 4e-06
 Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 6/156 (3%)

Query: 6   QSPGLAEAARDNLAAELARLR---QRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVL 62
           Q   L + A + L +EL  L    +     +IE   + G + ++G    A +   +    
Sbjct: 3   QQTWLTQEAYNRLRSELDYLTGTWRTEIAAKIEAAREEGDLKENGGYHAAKEEQGKQEAR 62

Query: 63  TERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETL 122
             ++ +L R  + G +++  S     GT V +RF   +     +I   E++      E  
Sbjct: 63  IRQLMDLLRDARVGQASSAASGEAGPGTIVEIRFPGEKETERFLIGSREDHSAS--IEVF 120

Query: 123 TAHSPLGQALAGRQAGDTVTYSTPRG-PSQVELLSI 157
           +  SPLG A+ G +AGDTV Y+ P G P+ VE++S+
Sbjct: 121 SPASPLGGAVTGHKAGDTVKYTLPNGRPATVEIVSV 156


>tr|Q0RCI8|Q0RCI8_FRAAA Tax_Id=326424 (greA)RecName:
           Full=Transcription elongation factor;[Frankia alni]
          Length = 163

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 7/156 (4%)

Query: 6   QSPGLAEAARDNLAAELARLR---QRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVL 62
           Q   L + A D L +EL  L    +     +IE   + G + ++G    A +   +    
Sbjct: 6   QQTWLTQEAYDRLRSELDYLTGPWRTEIATKIEAAREEGDLKENGGYHAAKEEQGKQEAR 65

Query: 63  TERIHELDRRLKAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETL 122
             ++ +L R  + G S AT  E  P GT V +RF   +     +I   E++      +  
Sbjct: 66  IRQLSDLLRDAQVGESPATTGEAGP-GTVVEVRFPGEQETEKFLIGSREDHSA--PIDVF 122

Query: 123 TAHSPLGQALAGRQAGDTVTYSTPRGPS-QVELLSI 157
           +  SPLG A+ G +AG+TV+Y+ P G S +VE++S+
Sbjct: 123 SPASPLGGAVNGHKAGETVSYTLPNGRSAKVEIVSV 158


>tr|B1H062|B1H062_UNCTG Tax_Id=471821 RecName: Full=Transcription
           elongation factor;[Uncultured termite group 1 bacterium
           phylotype Rs-D17]
          Length = 158

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 13/154 (8%)

Query: 10  LAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDA---AEAIQRADELAVLTERI 66
           L    R  L  EL  L++R   ++ E+ + R    +HGD    AE     + LA L  RI
Sbjct: 6   LTREGRKKLIKELNELQKRKPLIQDEIASAR----EHGDLRENAEYCAAKETLANLIRRI 61

Query: 67  HELDRRL---KAGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETLT 123
            EL  ++   K        S+ +  G  VT++ + G      ++ + E +PV +    ++
Sbjct: 62  MELTSKIACAKIIEEQNIDSDKVFIGVTVTIKDEYGADYQYAIVDLEEADPVANR---IS 118

Query: 124 AHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSI 157
             SPL Q L G  AG+TV    P G ++ ++L I
Sbjct: 119 IQSPLAQGLLGHTAGETVAVELPAGKTKFKILKI 152


>tr|B3XLN9|B3XLN9_LACRE Tax_Id=349123 RecName: Full=Transcription
           elongation factor;[Lactobacillus reuteri 100-23]
          Length = 165

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 6/141 (4%)

Query: 21  ELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLK-AGPSN 79
           ++A+L+Q+      ++K  R + GD  +  E      EL  L  R+  L+++L+ A    
Sbjct: 29  QIAKLQQQRPAKIEQLKAARAL-GDLSENTEYSTAKRELRHLESRLRYLNKQLQYAEIVT 87

Query: 80  ATGSETLPSGTEVTLRF-DDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAG 138
                T+  GT VT+ F DD E  T H++   E +    +   ++  SPLGQAL  + AG
Sbjct: 88  PKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQK---ISFDSPLGQALLHKTAG 144

Query: 139 DTVTYSTPRGPSQVELLSIKL 159
            TVT   P+   +V+++ ++L
Sbjct: 145 TTVTVEAPQSLYKVKIVKVEL 165


>tr|B2G9Q3|B2G9Q3_LACRJ Tax_Id=557433 SubName: Full=Transcription
           elongation factor GreA;[Lactobacillus reuteri]
          Length = 156

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 6/141 (4%)

Query: 21  ELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLK-AGPSN 79
           ++A+L+Q+      ++K  R + GD  +  E      EL  L  R+  L+++L+ A    
Sbjct: 20  QIAKLQQQRPAKIEQLKAARAL-GDLSENTEYSTAKRELRHLESRLRYLNKQLQYAEIVT 78

Query: 80  ATGSETLPSGTEVTLRF-DDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAG 138
                T+  GT VT+ F DD E  T H++   E +    +   ++  SPLGQA+  + AG
Sbjct: 79  PKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQK---ISFDSPLGQAILHQTAG 135

Query: 139 DTVTYSTPRGPSQVELLSIKL 159
            TVT   P+   +V+++ ++L
Sbjct: 136 TTVTVEAPQSSYKVKIVKVEL 156


>tr|A5VME9|A5VME9_LACRD Tax_Id=557436 SubName: Full=Transcription
           elongation factor GreA;[Lactobacillus reuteri]
          Length = 165

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 6/141 (4%)

Query: 21  ELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLK-AGPSN 79
           ++A+L+Q+      ++K  R + GD  +  E      EL  L  R+  L+++L+ A    
Sbjct: 29  QIAKLQQQRPAKIEQLKAARAL-GDLSENTEYSTAKRELRHLESRLRYLNKQLQYAEIVT 87

Query: 80  ATGSETLPSGTEVTLRF-DDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAG 138
                T+  GT VT+ F DD E  T H++   E +    +   ++  SPLGQA+  + AG
Sbjct: 88  PKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQK---ISFDSPLGQAILHQTAG 144

Query: 139 DTVTYSTPRGPSQVELLSIKL 159
            TVT   P+   +V+++ ++L
Sbjct: 145 TTVTVEAPQSSYKVKIVKVEL 165


>tr|A4G183|A4G183_HERAR Tax_Id=204773 SubName: Full=Putative
           transcription elongation factor GreB;[Herminiimonas
           arsenicoxydans]
          Length = 193

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 17/151 (11%)

Query: 17  NLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAV--LTERIHELDRRLK 74
           +L +EL RL        +  +N         D A   + + E  V  + +RIH L  RL+
Sbjct: 36  HLQSELQRLMNEAQSAAVREENP--------DNATFSEMSPERTVREIEQRIHYLQARLE 87

Query: 75  AG----PSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQ 130
                 P    G E +  G  VT + + GE  ++ ++ + E +P       L   SP+ Q
Sbjct: 88  MAEIVDPGVHAGEEQIFFGANVTYQHESGEQQSVTIVGLDELDPANGRISWL---SPVAQ 144

Query: 131 ALAGRQAGDTVTYSTPRGPSQVELLSIKLPT 161
           +L G  AGD VT  +P G   +++L++  PT
Sbjct: 145 SLLGAYAGDEVTLESPAGKEVLKVLAVHYPT 175


>tr|C6VJG0|C6VJG0_LACPJ Tax_Id=644042 (greA)SubName:
           Full=Transcription elongation factor GreA;[Lactobacillus
           plantarum]
          Length = 156

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 7/135 (5%)

Query: 26  RQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLK-AGPSNATGSE 84
           +QR +R+ I        +GD  + AE      +L  L  R+  L+++L+ A       + 
Sbjct: 25  QQRPERIRILAA--AAALGDRSENAEYSSAKRDLGRLESRLRYLNKQLQYAQIVQPADNN 82

Query: 85  TLPSGTEVTLRF-DDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAGDTVTY 143
            L  G  VT+ F DD + +T  ++   E N    E + ++  SP+GQALA     D VT 
Sbjct: 83  QLDIGKFVTIEFLDDHDQITYQLVGKQEANL---EQQKISFTSPIGQALANHTVDDVVTV 139

Query: 144 STPRGPSQVELLSIK 158
           + P G  QV+++++K
Sbjct: 140 NAPNGAYQVKVIAVK 154


>tr|C2FQV3|C2FQV3_LACPL Tax_Id=525338 (greA)SubName:
           Full=Transcription elongation factor GreA;[Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 187

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 7/135 (5%)

Query: 26  RQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLK-AGPSNATGSE 84
           +QR +R+ I        +GD  + AE      +L  L  R+  L+++L+ A       + 
Sbjct: 56  QQRPERIRILAA--AAALGDRSENAEYSSAKRDLGRLESRLRYLNKQLQYAQIVQPADNN 113

Query: 85  TLPSGTEVTLRF-DDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAGDTVTY 143
            L  G  VT+ F DD + +T  ++   E N    E + ++  SP+GQALA     D VT 
Sbjct: 114 QLDIGKFVTIEFLDDHDQITYQLVGKQEANL---EQQKISFTSPIGQALANHTVDDVVTV 170

Query: 144 STPRGPSQVELLSIK 158
           + P G  QV+++++K
Sbjct: 171 NAPNGAYQVKVIAVK 185


>tr|C2F6Q2|C2F6Q2_LACRE Tax_Id=548485 (greA)SubName:
           Full=Transcription elongation factor GreA;[Lactobacillus
           reuteri MM4-1A]
          Length = 192

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 6/141 (4%)

Query: 21  ELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLK-AGPSN 79
           ++A+L+Q+      ++K  R + GD  +  E      EL  L  R+  L+++L+ A    
Sbjct: 56  QIAKLQQQRPAKIEQLKAARAL-GDLSENTEYSTAKRELRHLESRLRYLNKQLQYAEIVT 114

Query: 80  ATGSETLPSGTEVTLRF-DDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAG 138
                T+  GT VT+ F DD E  T H++   E +    +   ++  SPLGQA+  + AG
Sbjct: 115 PKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQK---ISFDSPLGQAILHQTAG 171

Query: 139 DTVTYSTPRGPSQVELLSIKL 159
            TVT   P+   +V+++ ++L
Sbjct: 172 TTVTVEAPQSSYKVKIVKVEL 192


>tr|C0YZ53|C0YZ53_LACRE Tax_Id=585517 (greA)SubName:
           Full=Transcription elongation factor GreA;[Lactobacillus
           reuteri MM2-3]
          Length = 192

 Score = 53.5 bits (127), Expect = 7e-06
 Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 6/141 (4%)

Query: 21  ELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLK-AGPSN 79
           ++A+L+Q+      ++K  R + GD  +  E      EL  L  R+  L+++L+ A    
Sbjct: 56  QIAKLQQQRPAKIEQLKAARAL-GDLSENTEYSTAKRELRHLESRLRYLNKQLQYAEIVT 114

Query: 80  ATGSETLPSGTEVTLRF-DDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAG 138
                T+  GT VT+ F DD E  T H++   E +    +   ++  SPLGQA+  + AG
Sbjct: 115 PKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQK---ISFDSPLGQAILHQTAG 171

Query: 139 DTVTYSTPRGPSQVELLSIKL 159
            TVT   P+   +V+++ ++L
Sbjct: 172 TTVTVEAPQSSYKVKIVKVEL 192


>tr|Q74LK5|Q74LK5_LACJO Tax_Id=33959 RecName: Full=Transcription
           elongation factor;[Lactobacillus johnsonii]
          Length = 153

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 6/139 (4%)

Query: 21  ELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLKAGPS-N 79
           E+ARL++   R  I++  +   +GD  + +E      EL  L  R+  LD++L+      
Sbjct: 18  EIARLKKDRPR-RIKILQEARSMGDLSENSEYTTAKMELGHLQSRLRYLDKQLRYSEIIQ 76

Query: 80  ATGSETLPSGTEVTLRFD-DGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAG 138
              S T+  G+ VTL F+ D E     ++  +E +    +   ++  SPLGQAL  ++AG
Sbjct: 77  KDESGTIDLGSNVTLLFEGDDEAEEYRIVGRMEADLAKGK---ISFDSPLGQALMKQKAG 133

Query: 139 DTVTYSTPRGPSQVELLSI 157
            TVT   P G   V+++ +
Sbjct: 134 ATVTVEAPAGSYDVKIIDV 152


>tr|Q5FMH3|Q5FMH3_LACAC Tax_Id=1579 (greA)RecName:
           Full=Transcription elongation factor;[Lactobacillus
           acidophilus]
          Length = 153

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 4/139 (2%)

Query: 21  ELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLKAGPSNA 80
           E+ARL++   R  I++  D   +GD  +  E  +   +L  L  R+  LD++LK      
Sbjct: 18  EIARLKKDRPR-RIKILQDARALGDLSENTEYTEAKRDLGHLQSRLRYLDKQLKYAEIVE 76

Query: 81  TGSE-TLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAGD 139
           T  +  +  G  V L+FDD +    +   IV       E   ++  SPLGQA+  ++AG 
Sbjct: 77  TKDDGKVDLGKTVVLKFDDDDETEEY--KIVGRMEANLEDGKISFDSPLGQAIMKKEAGV 134

Query: 140 TVTYSTPRGPSQVELLSIK 158
           T     P G  +V ++ +K
Sbjct: 135 TSIVEAPAGEYKVTIVEVK 153


>tr|Q04CB1|Q04CB1_LACDB Tax_Id=321956 SubName: Full=Transcription
           elongation factor GreA;[Lactobacillus delbrueckii subsp.
           bulgaricus]
          Length = 153

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 4/139 (2%)

Query: 21  ELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLKAGPSNA 80
           E+A L+    R    +K  R + GD  +  E      EL  L  R+  L+++LK      
Sbjct: 18  EIAALKADRPRRVQNLKEARAL-GDLSENTEYSTAKRELRHLDSRVRYLNKQLKYAEVIE 76

Query: 81  TGSE-TLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQALAGRQAGD 139
           T ++  +  G +V +R++D + V  + I    E  VG     L   SPLG AL   +AGD
Sbjct: 77  TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDG--KLPFDSPLGHALMKHKAGD 134

Query: 140 TVTYSTPRGPSQVELLSIK 158
            VT   P G  +V +LS+K
Sbjct: 135 RVTVKAPMGDYEVTILSVK 153


>tr|C2EF90|C2EF90_9LACO Tax_Id=525364 (greA-1)RecName:
           Full=Transcription elongation factor;[Lactobacillus
           salivarius ATCC 11741]
          Length = 156

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 6/147 (4%)

Query: 15  RDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELAVLTERIHELDRRLK 74
           ++ L  EL  LR       IE        GD  + +E     DE A +  RI E+   L 
Sbjct: 13  KEKLEQELEELRTTKRAEIIERIKIARSFGDLSENSEYESAKDEQAFMEARIKEIQNMLN 72

Query: 75  AGP---SNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEYETLTAHSPLGQA 131
                 + +     +  G  VT + DD E  T  ++   E +P   +   ++  SP+   
Sbjct: 73  HAEIIDNKSIDENEVAVGKTVTFQEDDDEPETYQIVGAAEADPFEGK---ISNESPIASG 129

Query: 132 LAGRQAGDTVTYSTPRGPSQVELLSIK 158
           L G + GD V+  TP G  QV+++ +K
Sbjct: 130 LIGHKLGDVVSIDTPGGTMQVKIIDVK 156


  Database: Amellifera_nr
    Posted date:  Feb 5, 2010  5:10 AM
  Number of letters in database: 3,846,993,858
  Number of sequences in database:  11,275,203
  
Lambda     K      H
   0.311    0.130    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11275203
Number of Hits to DB: 1,167,293,114
Number of extensions: 46062960
Number of successful extensions: 121468
Number of sequences better than 10.0: 1867
Number of HSP's gapped: 124077
Number of HSP's successfully gapped: 1867
Length of query: 161
Length of database: 3,846,993,858
Length adjustment: 122
Effective length of query: 39
Effective length of database: 2,471,419,092
Effective search space: 96385344588
Effective search space used: 96385344588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 75 (33.5 bits)