BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MMAR_5402
         (156 letters)

Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr;
Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr;
trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr;
Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr;
Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr;
Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr;
Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr;
Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr;
Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr;
Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr;
Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr;
Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 
           11,275,203 sequences; 3,846,993,858 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits)  Value

tr|B2HMN8|B2HMN8_MYCMM Tax_Id=216594 (hns)SubName: Full=Histone-...    97   6e-19
tr|A0PX30|A0PX30_MYCUA Tax_Id=362242 (hns)SubName: Full=Histone-...    82   1e-14

>tr|B2HMN8|B2HMN8_MYCMM Tax_Id=216594 (hns)SubName:
           Full=Histone-like protein Hns;[Mycobacterium marinum]
          Length = 156

 Score = 97.1 bits (240), Expect = 6e-19
 Identities = 60/135 (44%), Positives = 60/135 (44%)

Query: 1   MADPQDRPDGEPDATPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MADPQDRPDGEPDATPGQ                                          
Sbjct: 1   MADPQDRPDGEPDATPGQPAKKPPADKAAKTPAKKTPAKKTPAKKAPAQKAPAKKAPAKK 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXTALANVSQQQPSANGQLXXXXXXXXXXXKSTVDRANNP 120
                                 TALANVSQQQPSANGQL           KSTVDRANNP
Sbjct: 61  APAKKAPATKPPAQSPEPAPQPTALANVSQQQPSANGQLAEAAKDAAAQAKSTVDRANNP 120

Query: 121 LPRVADEQPSHSTVP 135
           LPRVADEQPSHSTVP
Sbjct: 121 LPRVADEQPSHSTVP 135


>tr|A0PX30|A0PX30_MYCUA Tax_Id=362242 (hns)SubName:
           Full=Histone-like protein Hns;[Mycobacterium ulcerans]
          Length = 159

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 42/53 (79%), Positives = 42/53 (79%)

Query: 83  TALANVSQQQPSANGQLXXXXXXXXXXXKSTVDRANNPLPRVADEQPSHSTVP 135
           TALANVSQQQPSANGQL           KSTVDRANNPLPRVADEQPSHSTVP
Sbjct: 86  TALANVSQQQPSANGQLAEAAKDAAAQAKSTVDRANNPLPRVADEQPSHSTVP 138



 Score = 43.9 bits (102), Expect = 0.006
 Identities = 18/18 (100%), Positives = 18/18 (100%)

Query: 1  MADPQDRPDGEPDATPGQ 18
          MADPQDRPDGEPDATPGQ
Sbjct: 1  MADPQDRPDGEPDATPGQ 18


  Database: Amellifera_nr
    Posted date:  Feb 5, 2010  5:10 AM
  Number of letters in database: 3,846,993,858
  Number of sequences in database:  11,275,203
  
Lambda     K      H
   0.303    0.121    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 11275203
Number of Hits to DB: 482,601,284
Number of extensions: 7949975
Number of successful extensions: 4522
Number of sequences better than 10.0: 2
Number of HSP's gapped: 4522
Number of HSP's successfully gapped: 4
Length of query: 156
Length of database: 3,846,993,858
Length adjustment: 118
Effective length of query: 38
Effective length of database: 2,516,519,904
Effective search space: 95627756352
Effective search space used: 95627756352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 75 (33.5 bits)