BLASTP 2.2.16 [Mar-25-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MMAR_5475 (195 letters) Database: Amellifera_nr; Agambiae_nr; Cfamiliaris_nr; Cbriggsae_nr; Celegans_nr; swiss_varsplic_nr; Dmelanogaster_nr; Drerio_nr; trembl_nr; Ggallus_nr; Hsapiens_nr; Mmusculus_nr; Ptroglodytes_nr; Rnorvegicus_nr; Tnigroviridis_nr; swiss_nr; wormpep_nr; yeastpep_nr; Aaegypti_nr; Btaurus_nr; Cintestinalis_nr; Mdomestica_nr; Mmulatta_nr; Scerevisiae_nr; Xtropicalis_nr; Csavignyi_nr; Dnovemcinctus_nr; Etelfairi_nr; Gaculeatus_nr; Lafricana_nr; Ocuniculus_nr; Trubripes_nr; Pberghei_nr; Pchabaudi_nr; Pfalciparum_nr; Pvivax_nr; Pyoelii_nr; Tgondii_nr; Pknowlesi_nr; Cporcellus_nr; Eeuropaeus_nr; Fcatus_nr; Mlucifugus_nr; Mmurinus_nr; Oanatinus_nr; Ogarnettii_nr; Olatipes_nr; Oprinceps_nr; Saraneus_nr; Stridecemlineatus_nr; Tbelangeri_nr; Ecaballus_nr; Ppygmaeus_nr 11,275,203 sequences; 3,846,993,858 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr|B2HNS6|B2HNS6_MYCMM Tax_Id=216594 (sigM)SubName: Full=Alterna... 311 3e-83 tr|A0PX58|A0PX58_MYCUA Tax_Id=362242 (sigM)SubName: Full=Alterna... 303 9e-81 tr|C6DPE1|C6DPE1_MYCTK Tax_Id=478434 SubName: Full=RNA polymeras... 243 1e-62 tr|C1AJ51|C1AJ51_MYCBT Tax_Id=561275 (sigMa)SubName: Full=RNA po... 243 1e-62 tr|A5U9N9|A5U9N9_MYCTA Tax_Id=419947 (sigM)SubName: Full=RNA pol... 243 1e-62 tr|A1KEF5|A1KEF5_MYCBP Tax_Id=410289 (sigMa_2)SubName: Full=Poss... 243 1e-62 tr|Q8VIQ8|Q8VIQ8_MYCTU Tax_Id=1773 (sigM)SubName: Full=RNA polym... 243 1e-62 tr|A5WUD2|A5WUD2_MYCTF Tax_Id=336982 SubName: Full=Alternative R... 243 1e-62 tr|A4KN19|A4KN19_MYCTU Tax_Id=395095 SubName: Full=Alternative R... 243 1e-62 tr|A2VMT2|A2VMT2_MYCTU Tax_Id=348776 SubName: Full=Alternative R... 243 1e-62 tr|Q7TVD0|Q7TVD0_MYCBO Tax_Id=1765 (sigMa)SubName: Full=POSSIBLE... 241 2e-62 tr|Q73RU1|Q73RU1_MYCPA Tax_Id=1770 (sigM)SubName: Full=SigM;[Myc... 231 3e-59 tr|A0QNC1|A0QNC1_MYCA1 Tax_Id=243243 SubName: Full=RNA polymeras... 231 3e-59 tr|O53590|O53590_MYCTU Tax_Id=1773 (sigM)SubName: Full=POSSIBLE ... 219 1e-55 tr|B1MMM1|B1MMM1_MYCA9 Tax_Id=561007 SubName: Full=Possible alte... 210 6e-53 tr|A1TI17|A1TI17_MYCVP Tax_Id=350058 SubName: Full=Transcription... 209 1e-52 tr|A4T4S7|A4T4S7_MYCGI Tax_Id=350054 SubName: Full=Transcription... 196 1e-48 tr|Q1B0T3|Q1B0T3_MYCSS Tax_Id=164756 SubName: Full=RNA polymeras... 191 3e-47 tr|A3Q8R3|A3Q8R3_MYCSJ Tax_Id=164757 SubName: Full=Transcription... 191 3e-47 tr|A1UPB7|A1UPB7_MYCSK Tax_Id=189918 SubName: Full=Transcription... 191 3e-47 tr|A0R7I6|A0R7I6_MYCS2 Tax_Id=246196 SubName: Full=RNA polymeras... 184 4e-45 tr|Q0SAI8|Q0SAI8_RHOSR Tax_Id=101510 SubName: Full=Sigma factor,... 174 6e-42 tr|C1B7Q9|C1B7Q9_RHOOB Tax_Id=632772 (sigM)SubName: Full=RNA pol... 172 2e-41 tr|A4XDI9|A4XDI9_SALTO Tax_Id=369723 SubName: Full=Sigma-70 regi... 163 1e-38 tr|C7Q5P2|C7Q5P2_CATAD Tax_Id=479433 SubName: Full=RNA polymeras... 162 1e-38 tr|C6WSK4|C6WSK4_ACTMD Tax_Id=446462 SubName: Full=RNA polymeras... 162 1e-38 tr|C7MS50|C7MS50_SACVD Tax_Id=471857 SubName: Full=RNA polymeras... 162 2e-38 tr|A8LXI9|A8LXI9_SALAI Tax_Id=391037 SubName: Full=RNA polymeras... 159 2e-37 tr|C4RHK6|C4RHK6_9ACTO Tax_Id=219305 SubName: Full=Sigma-70 regi... 156 1e-36 tr|C0ZVN0|C0ZVN0_RHOE4 Tax_Id=234621 (sigM)SubName: Full=Putativ... 155 2e-36 tr|Q5YMS9|Q5YMS9_NOCFA Tax_Id=37329 SubName: Full=Putative sigma... 154 4e-36 tr|C3JLB9|C3JLB9_RHOER Tax_Id=596309 SubName: Full=RNA polymeras... 154 4e-36 tr|A6WGM1|A6WGM1_KINRD Tax_Id=266940 SubName: Full=RNA polymeras... 147 6e-34 tr|C4DKE0|C4DKE0_9ACTO Tax_Id=446470 SubName: Full=RNA polymeras... 145 2e-33 tr|B5GHR3|B5GHR3_9ACTO Tax_Id=465543 SubName: Full=RNA polymeras... 142 2e-32 tr|D0L9B9|D0L9B9_GORB4 Tax_Id=526226 SubName: Full=RNA polymeras... 140 6e-32 tr|C4EAL1|C4EAL1_STRRS Tax_Id=479432 SubName: Full=RNA polymeras... 140 7e-32 tr|Q47K83|Q47K83_THEFY Tax_Id=269800 SubName: Full=Putative RNA ... 138 3e-31 tr|D1A948|D1A948_THECU Tax_Id=471852 SubName: Full=RNA polymeras... 137 5e-31 tr|B4V9J8|B4V9J8_9ACTO Tax_Id=465541 SubName: Full=RNA polymeras... 137 6e-31 tr|A4FR63|A4FR63_SACEN Tax_Id=405948 (sigT)SubName: Full=Putativ... 137 8e-31 tr|Q9S6U3|Q9S6U3_STRCO Tax_Id=1902 (sigT)SubName: Full=Putative ... 136 1e-30 tr|C9ZAM0|C9ZAM0_STRSW Tax_Id=680198 SubName: Full=Putative sigm... 136 1e-30 tr|O86856|O86856_STRCO Tax_Id=1902 (sigT)SubName: Full=Sigma fac... 135 2e-30 tr|B5H622|B5H622_STRPR Tax_Id=457429 SubName: Full=RNA polymeras... 135 3e-30 tr|B5GX96|B5GX96_STRCL Tax_Id=443255 SubName: Full=RNA polymeras... 135 3e-30 tr|Q82FF0|Q82FF0_STRAW Tax_Id=33903 (sig37)SubName: Full=Putativ... 134 4e-30 tr|B5I781|B5I781_9ACTO Tax_Id=463191 SubName: Full=RNA polymeras... 132 2e-29 tr|B1VPD7|B1VPD7_STRGG Tax_Id=455632 SubName: Full=Putative RNA ... 132 2e-29 tr|C9N4J1|C9N4J1_9ACTO Tax_Id=591167 SubName: Full=RNA polymeras... 131 4e-29 >tr|B2HNS6|B2HNS6_MYCMM Tax_Id=216594 (sigM)SubName: Full=Alternative RNA polymerase sigma factor SigM;[Mycobacterium marinum] Length = 195 Score = 311 bits (796), Expect = 3e-83 Identities = 164/195 (84%), Positives = 165/195 (84%) Query: 1 VAFGGKXXXXXXXXXXXXXELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAED 60 +AFGGK ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAED Sbjct: 1 MAFGGKRQRRDTARQRTDAELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAED 60 Query: 61 ALQEAMISVHNCAGSFRQDAAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATT 120 ALQEAMISVHNCAGSFRQDAAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATT Sbjct: 61 ALQEAMISVHNCAGSFRQDAAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATT 120 Query: 121 RVETAILVRRALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRCXXXXXXXXX 180 RVETAILVRRALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC Sbjct: 121 RVETAILVRRALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRCARGRARLAR 180 Query: 181 XXXXXXXXINAVDMN 195 INAVDMN Sbjct: 181 LLGYLDADINAVDMN 195 >tr|A0PX58|A0PX58_MYCUA Tax_Id=362242 (sigM)SubName: Full=Alternative RNA polymerase sigma factor SigM;[Mycobacterium ulcerans] Length = 195 Score = 303 bits (775), Expect = 9e-81 Identities = 160/195 (82%), Positives = 163/195 (83%) Query: 1 VAFGGKXXXXXXXXXXXXXELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAED 60 +AFGGK ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAED Sbjct: 1 MAFGGKRQRRNTARQRTDAELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAED 60 Query: 61 ALQEAMISVHNCAGSFRQDAAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATT 120 ALQEAMISVHNCAGSFRQDAAVTSWLHRIVVNACL+RLRRA+SRPTVPLEDVYPVPDATT Sbjct: 61 ALQEAMISVHNCAGSFRQDAAVTSWLHRIVVNACLERLRRAESRPTVPLEDVYPVPDATT 120 Query: 121 RVETAILVRRALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRCXXXXXXXXX 180 RVETAILVRRALMRLPVEQRAAVVAVDMQ YSI DTALLLGVAQGTVKSRC Sbjct: 121 RVETAILVRRALMRLPVEQRAAVVAVDMQRYSIPDTALLLGVAQGTVKSRCARGRARLAR 180 Query: 181 XXXXXXXXINAVDMN 195 INAVDMN Sbjct: 181 LLSYLDADINAVDMN 195 >tr|C6DPE1|C6DPE1_MYCTK Tax_Id=478434 SubName: Full=RNA polymerase sigma factor sigM;[Mycobacterium tuberculosis] Length = 196 Score = 243 bits (619), Expect = 1e-62 Identities = 122/152 (80%), Positives = 137/152 (90%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLAA VAG++ AF++LFRRHHRQL+ LARLTS+T EDA+DALQ+AM+S H AGSFR D Sbjct: 23 ELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYD 82 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATTRVETAILVRRALMRLPVEQ 139 AAV+SWLHRIVVNACLDRLRRAK+ PT PLEDVYPV D T +VETAI V+RALMRLPVEQ Sbjct: 83 AAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIAVQRALMRLPVEQ 142 Query: 140 RAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 RAAVVAVDMQGYSIADTA +LGVA+GTVKSRC Sbjct: 143 RAAVVAVDMQGYSIADTARMLGVAEGTVKSRC 174 >tr|C1AJ51|C1AJ51_MYCBT Tax_Id=561275 (sigMa)SubName: Full=RNA polymerase sigma factor;[Mycobacterium bovis] Length = 196 Score = 243 bits (619), Expect = 1e-62 Identities = 122/152 (80%), Positives = 137/152 (90%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLAA VAG++ AF++LFRRHHRQL+ LARLTS+T EDA+DALQ+AM+S H AGSFR D Sbjct: 23 ELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYD 82 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATTRVETAILVRRALMRLPVEQ 139 AAV+SWLHRIVVNACLDRLRRAK+ PT PLEDVYPV D T +VETAI V+RALMRLPVEQ Sbjct: 83 AAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIAVQRALMRLPVEQ 142 Query: 140 RAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 RAAVVAVDMQGYSIADTA +LGVA+GTVKSRC Sbjct: 143 RAAVVAVDMQGYSIADTARMLGVAEGTVKSRC 174 >tr|A5U9N9|A5U9N9_MYCTA Tax_Id=419947 (sigM)SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium tuberculosis] Length = 196 Score = 243 bits (619), Expect = 1e-62 Identities = 122/152 (80%), Positives = 137/152 (90%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLAA VAG++ AF++LFRRHHRQL+ LARLTS+T EDA+DALQ+AM+S H AGSFR D Sbjct: 23 ELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYD 82 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATTRVETAILVRRALMRLPVEQ 139 AAV+SWLHRIVVNACLDRLRRAK+ PT PLEDVYPV D T +VETAI V+RALMRLPVEQ Sbjct: 83 AAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIAVQRALMRLPVEQ 142 Query: 140 RAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 RAAVVAVDMQGYSIADTA +LGVA+GTVKSRC Sbjct: 143 RAAVVAVDMQGYSIADTARMLGVAEGTVKSRC 174 >tr|A1KEF5|A1KEF5_MYCBP Tax_Id=410289 (sigMa_2)SubName: Full=Possible alternative RNA polymerase sigma factor sigMa [first part]; SubName: Full=Possible alternative rna polymerase sigma factor sigMa [FIRST PART];[Mycobacterium bovis] Length = 196 Score = 243 bits (619), Expect = 1e-62 Identities = 122/152 (80%), Positives = 137/152 (90%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLAA VAG++ AF++LFRRHHRQL+ LARLTS+T EDA+DALQ+AM+S H AGSFR D Sbjct: 23 ELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYD 82 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATTRVETAILVRRALMRLPVEQ 139 AAV+SWLHRIVVNACLDRLRRAK+ PT PLEDVYPV D T +VETAI V+RALMRLPVEQ Sbjct: 83 AAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIAVQRALMRLPVEQ 142 Query: 140 RAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 RAAVVAVDMQGYSIADTA +LGVA+GTVKSRC Sbjct: 143 RAAVVAVDMQGYSIADTARMLGVAEGTVKSRC 174 >tr|Q8VIQ8|Q8VIQ8_MYCTU Tax_Id=1773 (sigM)SubName: Full=RNA polymerase sigma-70 factor, ECF subfamily;[Mycobacterium tuberculosis] Length = 196 Score = 243 bits (619), Expect = 1e-62 Identities = 122/152 (80%), Positives = 137/152 (90%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLAA VAG++ AF++LFRRHHRQL+ LARLTS+T EDA+DALQ+AM+S H AGSFR D Sbjct: 23 ELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYD 82 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATTRVETAILVRRALMRLPVEQ 139 AAV+SWLHRIVVNACLDRLRRAK+ PT PLEDVYPV D T +VETAI V+RALMRLPVEQ Sbjct: 83 AAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIAVQRALMRLPVEQ 142 Query: 140 RAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 RAAVVAVDMQGYSIADTA +LGVA+GTVKSRC Sbjct: 143 RAAVVAVDMQGYSIADTARMLGVAEGTVKSRC 174 >tr|A5WUD2|A5WUD2_MYCTF Tax_Id=336982 SubName: Full=Alternative RNA polymerase sigma factor sigM;[Mycobacterium tuberculosis] Length = 196 Score = 243 bits (619), Expect = 1e-62 Identities = 122/152 (80%), Positives = 137/152 (90%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLAA VAG++ AF++LFRRHHRQL+ LARLTS+T EDA+DALQ+AM+S H AGSFR D Sbjct: 23 ELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYD 82 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATTRVETAILVRRALMRLPVEQ 139 AAV+SWLHRIVVNACLDRLRRAK+ PT PLEDVYPV D T +VETAI V+RALMRLPVEQ Sbjct: 83 AAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIAVQRALMRLPVEQ 142 Query: 140 RAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 RAAVVAVDMQGYSIADTA +LGVA+GTVKSRC Sbjct: 143 RAAVVAVDMQGYSIADTARMLGVAEGTVKSRC 174 >tr|A4KN19|A4KN19_MYCTU Tax_Id=395095 SubName: Full=Alternative RNA polymerase sigma factor sigM;[Mycobacterium tuberculosis str. Haarlem] Length = 196 Score = 243 bits (619), Expect = 1e-62 Identities = 122/152 (80%), Positives = 137/152 (90%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLAA VAG++ AF++LFRRHHRQL+ LARLTS+T EDA+DALQ+AM+S H AGSFR D Sbjct: 23 ELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYD 82 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATTRVETAILVRRALMRLPVEQ 139 AAV+SWLHRIVVNACLDRLRRAK+ PT PLEDVYPV D T +VETAI V+RALMRLPVEQ Sbjct: 83 AAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIAVQRALMRLPVEQ 142 Query: 140 RAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 RAAVVAVDMQGYSIADTA +LGVA+GTVKSRC Sbjct: 143 RAAVVAVDMQGYSIADTARMLGVAEGTVKSRC 174 >tr|A2VMT2|A2VMT2_MYCTU Tax_Id=348776 SubName: Full=Alternative RNA polymerase sigma factor sigM;[Mycobacterium tuberculosis C] Length = 196 Score = 243 bits (619), Expect = 1e-62 Identities = 122/152 (80%), Positives = 137/152 (90%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLAA VAG++ AF++LFRRHHRQL+ LARLTS+T EDA+DALQ+AM+S H AGSFR D Sbjct: 23 ELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYD 82 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATTRVETAILVRRALMRLPVEQ 139 AAV+SWLHRIVVNACLDRLRRAK+ PT PLEDVYPV D T +VETAI V+RALMRLPVEQ Sbjct: 83 AAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIAVQRALMRLPVEQ 142 Query: 140 RAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 RAAVVAVDMQGYSIADTA +LGVA+GTVKSRC Sbjct: 143 RAAVVAVDMQGYSIADTARMLGVAEGTVKSRC 174 >tr|Q7TVD0|Q7TVD0_MYCBO Tax_Id=1765 (sigMa)SubName: Full=POSSIBLE ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGMa [FIRST PART];[Mycobacterium bovis] Length = 196 Score = 241 bits (616), Expect = 2e-62 Identities = 121/152 (79%), Positives = 137/152 (90%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLAA VAG++ AF++LFRRHHRQL+ LARLTS+T EDA+DALQ+AM+S H AGSFR D Sbjct: 23 ELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYD 82 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATTRVETAILVRRALMRLPVEQ 139 AAV+SWLHRIVVNACLDRLRRAK+ PT PLEDVYPV D T +VETAI V+RALMRLPVEQ Sbjct: 83 AAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIAVQRALMRLPVEQ 142 Query: 140 RAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 RAAVVAVDMQGYSIADT+ +LGVA+GTVKSRC Sbjct: 143 RAAVVAVDMQGYSIADTSRMLGVAEGTVKSRC 174 >tr|Q73RU1|Q73RU1_MYCPA Tax_Id=1770 (sigM)SubName: Full=SigM;[Mycobacterium paratuberculosis] Length = 195 Score = 231 bits (589), Expect = 3e-59 Identities = 115/152 (75%), Positives = 132/152 (86%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLAA VAG++ AF ELF RH R L+ LARLT+++PEDAEDALQ+AM+S H AG+FR D Sbjct: 15 ELLAAHVAGDRYAFGELFVRHQRHLHRLARLTTRSPEDAEDALQDAMLSAHRGAGAFRHD 74 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATTRVETAILVRRALMRLPVEQ 139 AAV SWLHRIVVNACLDRLRR K+ PTVPLED+YPV D T +VET + V+RALMRLPVEQ Sbjct: 75 AAVGSWLHRIVVNACLDRLRRTKAHPTVPLEDIYPVADRTAQVETTLAVQRALMRLPVEQ 134 Query: 140 RAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 RAA+VAVDMQGYS+ADTA LLGVA+GTVKSRC Sbjct: 135 RAAIVAVDMQGYSVADTARLLGVAEGTVKSRC 166 >tr|A0QNC1|A0QNC1_MYCA1 Tax_Id=243243 SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium avium] Length = 195 Score = 231 bits (589), Expect = 3e-59 Identities = 115/152 (75%), Positives = 132/152 (86%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLAA VAG++ AF ELF RH R L+ LARLT+++PEDAEDALQ+AM+S H AG+FR D Sbjct: 15 ELLAAHVAGDRYAFGELFVRHQRHLHRLARLTTRSPEDAEDALQDAMLSAHRGAGAFRHD 74 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATTRVETAILVRRALMRLPVEQ 139 AAV SWLHRIVVNACLDRLRR K+ PTVPLED+YPV D T +VET + V+RALMRLPVEQ Sbjct: 75 AAVGSWLHRIVVNACLDRLRRTKAHPTVPLEDIYPVADRTAQVETTLAVQRALMRLPVEQ 134 Query: 140 RAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 RAA+VAVDMQGYS+ADTA LLGVA+GTVKSRC Sbjct: 135 RAAIVAVDMQGYSVADTARLLGVAEGTVKSRC 166 >tr|O53590|O53590_MYCTU Tax_Id=1773 (sigM)SubName: Full=POSSIBLE ALTERNATIVE RNA POLYMERASE SIGMA FACTOR SIGM;[Mycobacterium tuberculosis] Length = 222 Score = 219 bits (558), Expect = 1e-55 Identities = 112/146 (76%), Positives = 126/146 (86%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLAA VAG++ AF++LFRRHHRQL+ LARLTS+T EDA+DALQ+AM+S H AGSFR D Sbjct: 23 ELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYD 82 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATTRVETAILVRRALMRLPVEQ 139 AAV+SWLHRIVVNACLDRLRRAK+ PT PLEDVYPV D T +VETAI V+RALMRLPVEQ Sbjct: 83 AAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETAIAVQRALMRLPVEQ 142 Query: 140 RAAVVAVDMQGYSIADTALLLGVAQG 165 RAAVVAVDMQGYSIADT G +G Sbjct: 143 RAAVVAVDMQGYSIADTRPDAGRGRG 168 >tr|B1MMM1|B1MMM1_MYCA9 Tax_Id=561007 SubName: Full=Possible alternative RNA polymerase sigma factor SigM;[Mycobacterium abscessus] Length = 194 Score = 210 bits (535), Expect = 6e-53 Identities = 106/153 (69%), Positives = 128/153 (83%), Gaps = 1/153 (0%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLAA VAG+ AFE+LFRRHHR+LY LAR TS+TPEDA DALQEAM+S H A +FR D Sbjct: 15 ELLAAHVAGDPSAFEQLFRRHHRRLYRLARATSRTPEDAADALQEAMLSAHRGAANFRND 74 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPL-EDVYPVPDATTRVETAILVRRALMRLPVE 138 AAVTSWL+RIVVNACLDR+RR K+ + L EDVY + D +T V+T+I++++AL+RLP E Sbjct: 75 AAVTSWLYRIVVNACLDRMRRNKAHIPIELEEDVYTLEDPSTNVDTSIVIQKALLRLPAE 134 Query: 139 QRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 QRAAV+AVDMQGYS+AD A LLGV +GTVKSRC Sbjct: 135 QRAAVIAVDMQGYSVADAAELLGVPEGTVKSRC 167 >tr|A1TI17|A1TI17_MYCVP Tax_Id=350058 SubName: Full=Transcriptional regulator, Fis family;[Mycobacterium vanbaalenii] Length = 191 Score = 209 bits (532), Expect = 1e-52 Identities = 108/153 (70%), Positives = 129/153 (84%), Gaps = 1/153 (0%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLAA VAG++ AFEELF RHHRQLY LA+LTS+ P+DA DALQ+A+++ H A +FR D Sbjct: 20 ELLAAHVAGDRYAFEELFHRHHRQLYRLAQLTSRDPDDAADALQDALLAAHRTARTFRHD 79 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLED-VYPVPDATTRVETAILVRRALMRLPVE 138 +AV+SWL+RIVVNACLDRLRR +SR L+D PV D T RV+TAI+V RALMRLP+E Sbjct: 80 SAVSSWLYRIVVNACLDRLRRNRSRACEELDDQAGPVVDPTGRVDTAIVVERALMRLPLE 139 Query: 139 QRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 QRAAVVAVDMQGYSIA+TA +LGVA+GTVKSRC Sbjct: 140 QRAAVVAVDMQGYSIAETARMLGVAEGTVKSRC 172 >tr|A4T4S7|A4T4S7_MYCGI Tax_Id=350054 SubName: Full=Transcriptional regulator, Fis family;[Mycobacterium gilvum] Length = 189 Score = 196 bits (497), Expect = 1e-48 Identities = 103/153 (67%), Positives = 123/153 (80%), Gaps = 1/153 (0%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLAA VAG++ AFEELF RHHRQLY LA LTS+ P+DA DALQ+AM++ H A +FRQD Sbjct: 19 ELLAAHVAGDRYAFEELFHRHHRQLYRLAHLTSRDPDDAADALQDAMLAAHRTARTFRQD 78 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYP-VPDATTRVETAILVRRALMRLPVE 138 AV+SWL+RIVVNACLDRLRR K+R L+D D T V+TAI+V RAL+ LPVE Sbjct: 79 CAVSSWLYRIVVNACLDRLRRNKTRAWDVLDDESAGAFDPTGHVDTAIVVERALLCLPVE 138 Query: 139 QRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 QRAAVVAVDMQG+S+A+TA +LGV +GTVKSRC Sbjct: 139 QRAAVVAVDMQGFSVAETARMLGVPEGTVKSRC 171 >tr|Q1B0T3|Q1B0T3_MYCSS Tax_Id=164756 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Mycobacterium sp.] Length = 225 Score = 191 bits (486), Expect = 3e-47 Identities = 101/153 (66%), Positives = 122/153 (79%), Gaps = 1/153 (0%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 +LLA VAG++ AF ELF RH RQL LAR+TS EDA DALQEAM+S H A SFR D Sbjct: 13 QLLADHVAGDRYAFAELFVRHQRQLERLARITSSNREDAADALQEAMLSAHRKAASFRFD 72 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPL-EDVYPVPDATTRVETAILVRRALMRLPVE 138 +AV+SWL+RIVVNACLDRLR ++ T L +DV D T+RV+TAI++ RAL+RLPVE Sbjct: 73 SAVSSWLYRIVVNACLDRLRTNRTHATSTLVDDVGSAGDPTSRVDTAIVIERALLRLPVE 132 Query: 139 QRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 QRAA+VAVDMQGYS+A+TA +LGVA+GTVKSRC Sbjct: 133 QRAAIVAVDMQGYSVAETARMLGVAEGTVKSRC 165 >tr|A3Q8R3|A3Q8R3_MYCSJ Tax_Id=164757 SubName: Full=Transcriptional regulator, Fis family;[Mycobacterium sp.] Length = 225 Score = 191 bits (486), Expect = 3e-47 Identities = 102/153 (66%), Positives = 121/153 (79%), Gaps = 1/153 (0%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 +LLA VAG++ AF ELF RH RQL LAR+TS EDA DALQEAM+S H A SFR D Sbjct: 13 QLLADHVAGDRYAFAELFVRHQRQLERLARITSSNREDAADALQEAMLSAHRKAASFRFD 72 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPL-EDVYPVPDATTRVETAILVRRALMRLPVE 138 +AV+SWL+RIVVNACLDRLR ++ T L +DV D T RV+TAI++ RAL+RLPVE Sbjct: 73 SAVSSWLYRIVVNACLDRLRTNRTHATSTLVDDVGSAGDPTARVDTAIVIERALLRLPVE 132 Query: 139 QRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 QRAAVVAVDMQGYS+A+TA +LGVA+GTVKSRC Sbjct: 133 QRAAVVAVDMQGYSVAETARMLGVAEGTVKSRC 165 >tr|A1UPB7|A1UPB7_MYCSK Tax_Id=189918 SubName: Full=Transcriptional regulator, Fis family;[Mycobacterium sp.] Length = 225 Score = 191 bits (486), Expect = 3e-47 Identities = 101/153 (66%), Positives = 122/153 (79%), Gaps = 1/153 (0%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 +LLA VAG++ AF ELF RH RQL LAR+TS EDA DALQEAM+S H A SFR D Sbjct: 13 QLLADHVAGDRYAFAELFVRHQRQLERLARITSSNREDAADALQEAMLSAHRKAASFRFD 72 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPL-EDVYPVPDATTRVETAILVRRALMRLPVE 138 +AV+SWL+RIVVNACLDRLR ++ T L +DV D T+RV+TAI++ RAL+RLPVE Sbjct: 73 SAVSSWLYRIVVNACLDRLRTNRTHATSTLVDDVGSAGDPTSRVDTAIVIERALLRLPVE 132 Query: 139 QRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 QRAA+VAVDMQGYS+A+TA +LGVA+GTVKSRC Sbjct: 133 QRAAIVAVDMQGYSVAETARMLGVAEGTVKSRC 165 >tr|A0R7I6|A0R7I6_MYCS2 Tax_Id=246196 SubName: Full=RNA polymerase sigma-70 factor;[Mycobacterium smegmatis] Length = 208 Score = 184 bits (467), Expect = 4e-45 Identities = 100/160 (62%), Positives = 121/160 (75%), Gaps = 8/160 (5%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLAA VAG++ AFEEL RHHRQL LA LTS +DA+DA+QEA++ H A +FR D Sbjct: 17 ELLAAHVAGDRYAFEELVLRHHRQLRRLAYLTSNHLDDADDAVQEALLKAHRTAATFRFD 76 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPT----VPLEDVY----PVPDATTRVETAILVRRA 131 AV+SWL+RIVVNACLDRLRR +++P+ V L V P D RV TAI V RA Sbjct: 77 CAVSSWLYRIVVNACLDRLRRTRTQPSATHYVELGHVNHLRDPAADPAPRVTTAITVERA 136 Query: 132 LMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 L++LPV+QRAAVVAVDMQGYS+A+TA LLGVA+GT+KSRC Sbjct: 137 LLQLPVDQRAAVVAVDMQGYSVAETARLLGVAEGTIKSRC 176 >tr|Q0SAI8|Q0SAI8_RHOSR Tax_Id=101510 SubName: Full=Sigma factor, sigma 70 type, group 4 (ECF);[Rhodococcus sp.] Length = 193 Score = 174 bits (440), Expect = 6e-42 Identities = 92/157 (58%), Positives = 117/157 (74%), Gaps = 5/157 (3%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 +LLAA VAG++ AFE L RH+ L+H+A+ TS T EDA DALQEA++S H AGSFR+D Sbjct: 16 DLLAAHVAGDRHAFETLLARHYDHLWHVAKRTSYTTEDAADALQEALLSAHRNAGSFRRD 75 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPL---EDVYP--VPDATTRVETAILVRRALMR 134 AAV SWLH IVVNACLDR+RR K+RP V L ED P D + VE +++V RAL + Sbjct: 76 AAVRSWLHTIVVNACLDRIRRNKARPAVSLSADEDDEPRDARDYVSEVELSLVVERALAQ 135 Query: 135 LPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 LP +QR A+VAVD++G S ++ A+LLGV +GTVKSRC Sbjct: 136 LPADQRTAIVAVDLEGRSTSEAAILLGVPEGTVKSRC 172 >tr|C1B7Q9|C1B7Q9_RHOOB Tax_Id=632772 (sigM)SubName: Full=RNA polymerase ECF-type sigma factor SigM;[Rhodococcus opacus] Length = 193 Score = 172 bits (436), Expect = 2e-41 Identities = 92/157 (58%), Positives = 117/157 (74%), Gaps = 5/157 (3%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 +LLAA VAG++ AFE L RH+ L+H+A+ TS T EDA DALQEA++S H AGSFR+D Sbjct: 16 DLLAAHVAGDRHAFETLLGRHYDHLWHVAKRTSYTTEDAADALQEALLSAHRNAGSFRRD 75 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPL---EDVYP--VPDATTRVETAILVRRALMR 134 AAV SWLH IVVNACLDR+RR K+RP V L ED P D + VE +++V RAL + Sbjct: 76 AAVRSWLHTIVVNACLDRIRRNKARPAVSLSADEDDEPRDTRDYVSEVELSLVVERALAQ 135 Query: 135 LPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 LP +QR A+VAVD++G S ++ A+LLGV +GTVKSRC Sbjct: 136 LPPDQRTAIVAVDLEGRSTSEAAVLLGVPEGTVKSRC 172 >tr|A4XDI9|A4XDI9_SALTO Tax_Id=369723 SubName: Full=Sigma-70 region 2 domain protein;[Salinispora tropica] Length = 244 Score = 163 bits (412), Expect = 1e-38 Identities = 89/162 (54%), Positives = 114/162 (70%), Gaps = 10/162 (6%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 +LL A VAG++ AF EL RH +L+ +A T E+A DALQ+A++S H AG FR D Sbjct: 26 DLLRAHVAGDRDAFAELLHRHQDRLWAVALRTLGDREEAADALQDALLSAHRAAGRFRGD 85 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLED-VYPVPDATTRVE---------TAILVR 129 +AVT+WLHRIVVNACLDR+RR ++ PTVPL D V+ V AT E TA++VR Sbjct: 86 SAVTTWLHRIVVNACLDRIRRRQAHPTVPLPDGVHDVAGATGGAEPAAPAPDHDTALVVR 145 Query: 130 RALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 AL LPVEQRAA++ VD+QGY +A+ A +L VA+GTVKSRC Sbjct: 146 EALAALPVEQRAALILVDVQGYPVAEVARILDVAEGTVKSRC 187 >tr|C7Q5P2|C7Q5P2_CATAD Tax_Id=479433 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Catenulispora acidiphila] Length = 219 Score = 162 bits (411), Expect = 1e-38 Identities = 89/157 (56%), Positives = 109/157 (69%), Gaps = 6/157 (3%) Query: 21 LLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQDA 80 LLA V G+ AF ELFRRH +L+ +A T PEDA DALQ+AM+S + AGSFR D+ Sbjct: 16 LLARHVEGDGEAFGELFRRHRDRLWAVALRTLSDPEDAADALQDAMLSAYRAAGSFRGDS 75 Query: 81 AVTSWLHRIVVNACLDRLRRAKSRPTVPLEDV---YPVPDATTRVETA---ILVRRALMR 134 AVT+WLHR+VVNACLDR+RR SRPTVPL +V Y P T + T + + AL Sbjct: 76 AVTTWLHRVVVNACLDRMRRRGSRPTVPLPEVETEYARPTVTDEITTTDLRLALASALAT 135 Query: 135 LPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 LP EQR A+V VD++GYS+ +TA LGVA GTVKSRC Sbjct: 136 LPEEQRVALVMVDVEGYSVDETAGALGVAPGTVKSRC 172 >tr|C6WSK4|C6WSK4_ACTMD Tax_Id=446462 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Actinosynnema mirum] Length = 203 Score = 162 bits (411), Expect = 1e-38 Identities = 84/157 (53%), Positives = 112/157 (71%), Gaps = 5/157 (3%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 EL++A AG+ AF EL +RH +++ +A T + P++A DALQEA IS A FR + Sbjct: 10 ELISAHAAGDPHAFSELVKRHRDRMWAVALRTLRDPDEAADALQEAFISAFRAAAGFRAE 69 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYP-----VPDATTRVETAILVRRALMR 134 + VT+WLHRIVVNACLDRLRR ++RPTVPL + P DA + ET ++V+ AL Sbjct: 70 SQVTTWLHRIVVNACLDRLRRRQTRPTVPLPEAGPGEPVAPRDAMSERETRLVVQAALNE 129 Query: 135 LPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 LP EQRA +V VD++GYS+A+TA LLG+A+GTVKSRC Sbjct: 130 LPEEQRAPIVLVDVEGYSVAETARLLGIAEGTVKSRC 166 >tr|C7MS50|C7MS50_SACVD Tax_Id=471857 SubName: Full=RNA polymerase, sigma subunit, ECF family;[Saccharomonospora viridis] Length = 200 Score = 162 bits (409), Expect = 2e-38 Identities = 83/157 (52%), Positives = 114/157 (72%), Gaps = 5/157 (3%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 +L+AA AG+ AF EL RRH +++ +A T + PE+A DALQ+A IS A +FR + Sbjct: 10 DLIAAHAAGDPHAFNELVRRHRDRMWAVALRTVRDPEEAADALQDAFISAFRAASNFRAE 69 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVY----PVP-DATTRVETAILVRRALMR 134 + VT+WLHRIVVNACLDR+RR ++RPTVPL D VP D+ ET +++++AL + Sbjct: 70 SQVTTWLHRIVVNACLDRVRRRQARPTVPLPDTSHQEPAVPRDSMAERETRLIIKQALEQ 129 Query: 135 LPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 LP EQR +V VD++GYS+A+TA LLG+A+GTVKSRC Sbjct: 130 LPEEQRVPIVLVDVEGYSVAETAQLLGIAEGTVKSRC 166 >tr|A8LXI9|A8LXI9_SALAI Tax_Id=391037 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Salinispora arenicola] Length = 246 Score = 159 bits (401), Expect = 2e-37 Identities = 88/166 (53%), Positives = 112/166 (67%), Gaps = 18/166 (10%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 +LL A VAG++ AF LF RH +L+ +A T E+A DALQ+A++S H AG FR D Sbjct: 26 DLLRAHVAGDRDAFAGLFHRHRDRLWAVALRTLGDREEAADALQDALLSAHRAAGRFRGD 85 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLED--------------VYPVPDATTRVETA 125 +AVT+WLHRIVVNACLDR+RR ++ PTVPL D PV D +TA Sbjct: 86 SAVTTWLHRIVVNACLDRIRRRQAHPTVPLPDGVRDHTGATGGTEPAAPVADH----DTA 141 Query: 126 ILVRRALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 ++VR AL LPVEQRAA+V VD+QGY +A+ A +L VA+GTVKSRC Sbjct: 142 LVVREALAALPVEQRAALVLVDVQGYPVAEVARILDVAEGTVKSRC 187 >tr|C4RHK6|C4RHK6_9ACTO Tax_Id=219305 SubName: Full=Sigma-70 region 2 domain-containing protein;[Micromonospora sp. ATCC 39149] Length = 258 Score = 156 bits (394), Expect = 1e-36 Identities = 84/161 (52%), Positives = 112/161 (69%), Gaps = 9/161 (5%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 +LL A VAG++ AF ELF RH +L+ +A T E+A DALQ+A++S H A FR D Sbjct: 12 DLLRAHVAGDRDAFTELFHRHRDRLWAVALRTIGDREEAADALQDALLSAHRAAARFRGD 71 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVY--------PVPDATTR-VETAILVRR 130 +AVT+WLHRIV+NACLDR+RR ++ PTVPL D P P A + +TA++VR+ Sbjct: 72 SAVTTWLHRIVMNACLDRIRRRQAHPTVPLPDGTHGGPFAGGPEPAAPVQDHDTALVVRQ 131 Query: 131 ALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 AL LP EQRAA++ D+QGY +A+ A +L VA+GTVKSRC Sbjct: 132 ALAELPAEQRAALILFDVQGYPVAEVARILDVAEGTVKSRC 172 >tr|C0ZVN0|C0ZVN0_RHOE4 Tax_Id=234621 (sigM)SubName: Full=Putative RNA polymerase ECF-type sigma factor SigM;[Rhodococcus erythropolis] Length = 208 Score = 155 bits (392), Expect = 2e-36 Identities = 87/157 (55%), Positives = 104/157 (66%), Gaps = 5/157 (3%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELL A VAG++ AF EL RH L+H+AR TS + EDA DALQE ++S H A FR D Sbjct: 31 ELLTAHVAGDRHAFRELLVRHQDHLWHVARRTSYSDEDAADALQEGLLSAHRKAAKFRGD 90 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPL-----EDVYPVPDATTRVETAILVRRALMR 134 AAV SWLH IVVNACLDR+RR KSR L E+ D V+ ++ V +AL Sbjct: 91 AAVRSWLHTIVVNACLDRIRRNKSRAAFSLSSENAEEPRDHRDYAAGVDMSLTVEQALAS 150 Query: 135 LPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 LP EQRAAVVAVD++GY +A+ A LGV GTVKSRC Sbjct: 151 LPPEQRAAVVAVDVEGYPVAEAAERLGVPVGTVKSRC 187 >tr|Q5YMS9|Q5YMS9_NOCFA Tax_Id=37329 SubName: Full=Putative sigma factor;[Nocardia farcinica] Length = 212 Score = 154 bits (390), Expect = 4e-36 Identities = 83/157 (52%), Positives = 106/157 (67%), Gaps = 5/157 (3%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELL A AG AF EL RRH+ L+ A TS T EDA D+LQ+A++S H AG+FR + Sbjct: 35 ELLQAHAAGRGHAFAELLRRHNDHLWQTALRTSYTREDAADSLQDALLSAHRTAGTFRAE 94 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTV-----PLEDVYPVPDATTRVETAILVRRALMR 134 A V SWLH IVVNACLDR+RR K+R V L + DA +E +++V RAL Sbjct: 95 AEVRSWLHAIVVNACLDRIRRNKTRRAVSFAPESLPERTEERDAFAELEMSLVVDRALFS 154 Query: 135 LPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 LP +QR A+VAVD++GYS+AD A +LGV +GT+KSRC Sbjct: 155 LPPDQRTALVAVDLEGYSVADAAAMLGVPEGTIKSRC 191 >tr|C3JLB9|C3JLB9_RHOER Tax_Id=596309 SubName: Full=RNA polymerase sigma factor SigM;[Rhodococcus erythropolis SK121] Length = 208 Score = 154 bits (390), Expect = 4e-36 Identities = 86/157 (54%), Positives = 103/157 (65%), Gaps = 5/157 (3%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELL A V G++ AF EL RH L+H+AR TS + EDA DALQE ++S H A FR D Sbjct: 31 ELLTAHVEGDRHAFRELLTRHQDHLWHVARRTSYSDEDAADALQEGLLSAHRKAAKFRGD 90 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPL-----EDVYPVPDATTRVETAILVRRALMR 134 AAV SWLH IVVNACLDR+RR KSR L E+ D V+ ++ V +AL Sbjct: 91 AAVRSWLHTIVVNACLDRIRRNKSRSAFSLSSENAEEPRDHRDYAATVDMSLTVEQALAS 150 Query: 135 LPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 LP EQRAAVVAVD++GY +A+ A LGV GTVKSRC Sbjct: 151 LPPEQRAAVVAVDVEGYPVAEAAERLGVPVGTVKSRC 187 >tr|A6WGM1|A6WGM1_KINRD Tax_Id=266940 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Kineococcus radiotolerans] Length = 200 Score = 147 bits (371), Expect = 6e-34 Identities = 86/167 (51%), Positives = 106/167 (63%), Gaps = 15/167 (8%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLAA VAG+ AF E+ RRH +L+ +A T+ E+A DALQ+A++S AG FR + Sbjct: 17 ELLAAHVAGDPEAFGEVVRRHRDRLWAVALRTTGDREEAADALQDALVSALRAAGRFRGE 76 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLED---------------VYPVPDATTRVET 124 +AVT+WLHRIVVNACLDR RR RPT PLE+ + DAT VET Sbjct: 77 SAVTTWLHRIVVNACLDRARRRAVRPTRPLEEEVGPGGEESARTGAALAVAEDATPHVET 136 Query: 125 AILVRRALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 A+ V AL RLP QRAA+V VDM +A+ A +L VA GTVKSRC Sbjct: 137 ALDVTSALARLPEAQRAALVLVDMYDVPVAEAAAILDVAVGTVKSRC 183 >tr|C4DKE0|C4DKE0_9ACTO Tax_Id=446470 SubName: Full=RNA polymerase, sigma subunit, ECF family;[Stackebrandtia nassauensis DSM 44728] Length = 212 Score = 145 bits (367), Expect = 2e-33 Identities = 77/147 (52%), Positives = 101/147 (68%), Gaps = 4/147 (2%) Query: 28 GEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQDAAVTSWLH 87 G++ AF ELFRRH +L+ +A T PE+A DALQ+AM++ + A FR D+AVT+WLH Sbjct: 20 GDRDAFGELFRRHRDRLWAVALRTLSDPEEAADALQDAMVNAYRAAARFRGDSAVTTWLH 79 Query: 88 RIVVNACLDRLRRAKSRPTVPLEDVYP---VPDATTRVETAIL-VRRALMRLPVEQRAAV 143 RIVVNACLDR+RR ++RP VP+ D P +P A +L VR+AL LP +QRA V Sbjct: 80 RIVVNACLDRVRRKQARPAVPMSDQLPEPAMPGADPADAAGVLAVRQALAELPFDQRAVV 139 Query: 144 VAVDMQGYSIADTALLLGVAQGTVKSR 170 V +DM GY +AD A +L + GTVKSR Sbjct: 140 VYIDMLGYPVADVAAILEIPAGTVKSR 166 >tr|B5GHR3|B5GHR3_9ACTO Tax_Id=465543 SubName: Full=RNA polymerase sigma factor SigM;[Streptomyces sp. SPB74] Length = 251 Score = 142 bits (358), Expect = 2e-32 Identities = 83/162 (51%), Positives = 103/162 (63%), Gaps = 10/162 (6%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLA VAGE AF EL RRH +L+ +A T EDA DA+Q+A +S + A +F Sbjct: 13 ELLARHVAGEHEAFGELVRRHRERLWAVALRTLGNREDAADAVQDAFVSAYRAAHTFGGR 72 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLED-------VYPVPDATTRVETAILVRR-- 130 +AVT+WLHRI VNACLDR R+A++R T P+ED + P A E A L R Sbjct: 73 SAVTTWLHRITVNACLDRARKAEARHTSPVEDTVRLEHLLRPEESAEAPAERADLHRELL 132 Query: 131 -ALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 AL LP EQRAA+V VDMQGY +A+ A +L VA GT+KSRC Sbjct: 133 AALRTLPAEQRAALVLVDMQGYPVAEAARILEVAPGTIKSRC 174 >tr|D0L9B9|D0L9B9_GORB4 Tax_Id=526226 SubName: Full=RNA polymerase sigma factor, sigma-70 family;[Gordonia bronchialis] Length = 196 Score = 140 bits (354), Expect = 6e-32 Identities = 74/157 (47%), Positives = 103/157 (65%), Gaps = 5/157 (3%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 +LL A G+ AF L RH L+ +A T+ +DA DALQ+A++S H A +FR D Sbjct: 23 QLLTAHTTGDPDAFTTLIHRHLPYLWSVALRTTGNHDDAADALQDALLSAHRSAPNFRAD 82 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPL-----EDVYPVPDATTRVETAILVRRALMR 134 A V SWLHRI+VN+CLD RR+++RPT+PL ++ D T V+ ++ + AL Sbjct: 83 AKVQSWLHRILVNSCLDSYRRSRARPTIPLPTWEVPEMADTTDHTVAVDLSMSIGDALTT 142 Query: 135 LPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 L QRAA+VAVD++GYS+A+ A LLGV +GT+KSRC Sbjct: 143 LTDGQRAAIVAVDIEGYSVAEAATLLGVPEGTIKSRC 179 >tr|C4EAL1|C4EAL1_STRRS Tax_Id=479432 SubName: Full=RNA polymerase, sigma subunit, ECF family;[Streptosporangium roseum DSM 43021] Length = 196 Score = 140 bits (353), Expect = 7e-32 Identities = 77/158 (48%), Positives = 101/158 (63%), Gaps = 6/158 (3%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 +LL +AG+ AF E+ +RH +++ +A T P++A DA+Q+A +S + A SFR + Sbjct: 5 DLLTRHIAGDPHAFSEIVKRHRDRMWAVALRTLGDPDEAADAVQDAFVSAYRKADSFRGE 64 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDV------YPVPDATTRVETAILVRRALM 133 AAVT+WLHRIVVNACLDR+RR RP E V PV D T E ++ V AL Sbjct: 65 AAVTTWLHRIVVNACLDRMRRKSVRPVADDELVEAAERDTPVLDQTAEREVSMEVSAALK 124 Query: 134 RLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 LP +QRAA+V VDM GYS+ D A +L V GTVKSRC Sbjct: 125 LLPADQRAALVLVDMMGYSVEDAAQVLEVPSGTVKSRC 162 >tr|Q47K83|Q47K83_THEFY Tax_Id=269800 SubName: Full=Putative RNA polymerase sigma factor;[Thermobifida fusca] Length = 206 Score = 138 bits (348), Expect = 3e-31 Identities = 79/162 (48%), Positives = 98/162 (60%), Gaps = 10/162 (6%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELL G++ AF EL +RHH +L+ +A E+A DALQ+A +S A FR + Sbjct: 12 ELLFRHNQGDEHAFSELVKRHHARLWAVAIRVLGDQEEAADALQDAFLSAFRSAHRFRGE 71 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDV----------YPVPDATTRVETAILVR 129 A V++WLHRIV+NAC DRLRR RP VP ED PD T R +T++ V Sbjct: 72 AMVSTWLHRIVINACHDRLRRKMVRPAVPTEDTALDLLSNERGRSAPDPTGRSDTSLDVH 131 Query: 130 RALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 AL LPVEQR A+V VDM GY + D A +L VA GTVKSRC Sbjct: 132 AALGYLPVEQRLALVLVDMLGYRVEDAAKILDVAPGTVKSRC 173 >tr|D1A948|D1A948_THECU Tax_Id=471852 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Thermomonospora curvata DSM 43183] Length = 209 Score = 137 bits (346), Expect = 5e-31 Identities = 76/159 (47%), Positives = 96/159 (60%), Gaps = 7/159 (4%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 EL++ G+ AF +L RH +++ +A T E+A DALQ+A +S + AG +R D Sbjct: 16 ELMSRHAQGDPHAFGQLIVRHRERMWAVAMRTLGDQEEAADALQDAFLSAYRAAGRYRGD 75 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPV-------PDATTRVETAILVRRAL 132 AAVT+WLHRIVVNACLDRLRR RP PL D + PD T T + V AL Sbjct: 76 AAVTTWLHRIVVNACLDRLRRKSIRPATPLGDEAKIDALAPKLPDPTEGHGTLLEVTAAL 135 Query: 133 MRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 LP EQRAA++ VDM GY + D A L V GT+KSRC Sbjct: 136 GELPFEQRAALILVDMLGYGVDDAAEFLDVPPGTIKSRC 174 >tr|B4V9J8|B4V9J8_9ACTO Tax_Id=465541 SubName: Full=RNA polymerase sigma factor SigM;[Streptomyces sp. Mg1] Length = 237 Score = 137 bits (345), Expect = 6e-31 Identities = 80/162 (49%), Positives = 102/162 (62%), Gaps = 10/162 (6%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLA AG+ AF EL RRH +L+ +A T E+A DA+Q+A++S + A +FR + Sbjct: 13 ELLALHAAGDPDAFGELVRRHRDRLWAVALRTLGDREEAADAVQDALVSAYRAAHTFRGE 72 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLED-------VYPVPDATTRVETAILVRR-- 130 +AVT+WLHRI VNACLDR R+A SR T PL+D + P A E L R+ Sbjct: 73 SAVTTWLHRITVNACLDRARKAASRKTSPLDDTERLERLLEPHESAEAPAERQDLHRQLL 132 Query: 131 -ALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 AL LP EQRA +V VDMQGY +A+ A +L V GTVKSRC Sbjct: 133 AALATLPAEQRAVLVLVDMQGYPVAEAARILDVPTGTVKSRC 174 >tr|A4FR63|A4FR63_SACEN Tax_Id=405948 (sigT)SubName: Full=Putative RNA polymerase sigma factor;[Saccharopolyspora erythraea] Length = 161 Score = 137 bits (344), Expect = 8e-31 Identities = 70/121 (57%), Positives = 92/121 (76%), Gaps = 5/121 (4%) Query: 56 EDAEDALQEAMISVHNCAGSFRQDAAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYP- 114 E+A DALQ+AMIS A SFR ++ VT+WLHRIVVNACLDR+RR ++RPTVPL D P Sbjct: 5 EEAADALQDAMISAFRNASSFRAESQVTTWLHRIVVNACLDRIRRRQARPTVPLPDTGPA 64 Query: 115 ---VP-DATTRVETAILVRRALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSR 170 VP DA +T + V+ AL LP +QRAA+V VD++GYS+++T+ +LGVA+GT+KSR Sbjct: 65 EPAVPRDAMAEQDTRMAVQDALAELPEDQRAAIVLVDVEGYSVSETSAMLGVAEGTIKSR 124 Query: 171 C 171 C Sbjct: 125 C 125 >tr|Q9S6U3|Q9S6U3_STRCO Tax_Id=1902 (sigT)SubName: Full=Putative RNA polymerase sigma factor;[Streptomyces coelicolor] Length = 236 Score = 136 bits (343), Expect = 1e-30 Identities = 79/162 (48%), Positives = 103/162 (63%), Gaps = 10/162 (6%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLA V G+ AF EL RRH +L+ +A T E+A DA+Q+A++S + A +FR Sbjct: 14 ELLARHVEGDPDAFGELVRRHRDRLWAVALRTLGDREEAADAVQDALVSAYRAAHTFRGQ 73 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLED-------VYPVPDATTRVETAILVRR-- 130 AAVT+WLHRI VNACLDR R+A SR T P++D + P A+ E L R+ Sbjct: 74 AAVTTWLHRITVNACLDRARKAASRKTAPVDDTERLEQLLEPHESASAPAERNDLHRQLL 133 Query: 131 -ALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 AL LP +QRAA+V VDMQGY +A+ A +L V GT+KSRC Sbjct: 134 EALGTLPADQRAALVLVDMQGYPVAEAARILDVPAGTIKSRC 175 >tr|C9ZAM0|C9ZAM0_STRSW Tax_Id=680198 SubName: Full=Putative sigma factor;[Streptomyces scabies] Length = 236 Score = 136 bits (342), Expect = 1e-30 Identities = 80/162 (49%), Positives = 104/162 (64%), Gaps = 10/162 (6%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 +LLA VAG+ AF EL RRH +L+ +A T E+A DA+Q+A++S + A +FR Sbjct: 14 DLLARHVAGDPDAFGELVRRHRDRLWAVALRTLGDREEAADAVQDALVSAYRAAHTFRGQ 73 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLED-------VYPVPDATTRVETAILVRR-- 130 AAVT+WLHRI VNACLDR R+A SR T P++D + P A+ E L R+ Sbjct: 74 AAVTTWLHRITVNACLDRARKAASRKTSPVDDTERLEQLLEPHESASAPAERNDLHRQLL 133 Query: 131 -ALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 AL LP +QRAA+V VDMQGY +A+ A +L V GTVKSRC Sbjct: 134 EALGTLPKDQRAALVLVDMQGYPVAEAARILDVPTGTVKSRC 175 >tr|O86856|O86856_STRCO Tax_Id=1902 (sigT)SubName: Full=Sigma factor;[Streptomyces coelicolor] Length = 236 Score = 135 bits (340), Expect = 2e-30 Identities = 79/162 (48%), Positives = 102/162 (62%), Gaps = 10/162 (6%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELLA V G+ AF EL RRH +L+ +A T E+A DA+Q+A++S + A +FR Sbjct: 14 ELLARHVEGDPDAFGELVRRHRDRLWAVALRTLGDREEAADAVQDALVSAYRAAHTFRGQ 73 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLED-------VYPVPDATTRVETAILVRR-- 130 AAVT+WLHRI VNACLDR R+A SR T P++D + P A+ E L R+ Sbjct: 74 AAVTTWLHRITVNACLDRARKAASRKTAPVDDTERLEQLLEPHESASAPAERNDLHRQLL 133 Query: 131 -ALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 AL LP +QRAA V VDMQGY +A+ A +L V GT+KSRC Sbjct: 134 EALGTLPADQRAAFVFVDMQGYPVAEAARILDVPAGTIKSRC 175 >tr|B5H622|B5H622_STRPR Tax_Id=457429 SubName: Full=RNA polymerase sigma factor SigM;[Streptomyces pristinaespiralis ATCC 25486] Length = 240 Score = 135 bits (339), Expect = 3e-30 Identities = 80/162 (49%), Positives = 102/162 (62%), Gaps = 10/162 (6%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 +LLA V G+ AF EL RRH +L+ +A T E+A DA+Q+A++S A +FR Sbjct: 19 DLLARHVDGDPDAFGELVRRHRDRLWAVALRTLGDREEAADAVQDALVSAFRAAHTFRGQ 78 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLED-------VYPVPDATTRVETAILVRR-- 130 +AVT+WLHRI VNACLDR R+A SR T P++D + P A E L R Sbjct: 79 SAVTTWLHRITVNACLDRARKAASRRTSPVDDTERLEQLLEPHESAEAPAERHDLHRELL 138 Query: 131 -ALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 AL +LPV+QRAA+V VDMQGY +A+ A LL V GTVKSRC Sbjct: 139 AALTKLPVDQRAALVLVDMQGYPVAEAARLLDVPTGTVKSRC 180 >tr|B5GX96|B5GX96_STRCL Tax_Id=443255 SubName: Full=RNA polymerase sigma factor SigM;[Streptomyces clavuligerus ATCC 27064] Length = 234 Score = 135 bits (339), Expect = 3e-30 Identities = 79/162 (48%), Positives = 100/162 (61%), Gaps = 10/162 (6%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 ELL V G AF EL RRH +L+ +A T E+A DA+Q+A++S A +FR Sbjct: 13 ELLTRHVEGHPHAFGELVRRHRDRLWAVALRTLGDREEAADAVQDALVSAFRAAHTFRGQ 72 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLED-------VYPVPDATTRVETAIL---VR 129 +AVT+WLHRI VNACLDR R+A SR T P+ED + P A E L + Sbjct: 73 SAVTTWLHRITVNACLDRARKAASRRTSPVEDTERLDQLLEPHESAEAPTERRALHHELV 132 Query: 130 RALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 AL +LP +QRAA+V VDMQGY +A+ A +LGV GTVKSRC Sbjct: 133 AALAQLPTDQRAALVLVDMQGYPVAEAARILGVPTGTVKSRC 174 >tr|Q82FF0|Q82FF0_STRAW Tax_Id=33903 (sig37)SubName: Full=Putative RNA polymerase ECF-subfamily sigma factor;[Streptomyces avermitilis] Length = 237 Score = 134 bits (338), Expect = 4e-30 Identities = 78/162 (48%), Positives = 103/162 (63%), Gaps = 10/162 (6%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 +LL+ VAG+ AF EL RRH +L+ +A T E+A DA+Q+A++S + A +FR Sbjct: 14 DLLSRHVAGDPEAFGELVRRHRDRLWAVALRTLGDREEAADAVQDALVSAYRAAHTFRGQ 73 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLED-------VYPVPDATTRVETAILVR--- 129 +AVT+WLHRI VNACLDR R+A SR T P++D + P A+ E L R Sbjct: 74 SAVTTWLHRITVNACLDRARKAASRKTSPVDDTERLEQLLEPHESASAPAERNDLHRELM 133 Query: 130 RALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 AL LP +QRAA+V VDMQGY +A+ A +L V GTVKSRC Sbjct: 134 EALGTLPADQRAALVLVDMQGYPVAEAARILDVPTGTVKSRC 175 >tr|B5I781|B5I781_9ACTO Tax_Id=463191 SubName: Full=RNA polymerase sigma factor SigM;[Streptomyces sviceus ATCC 29083] Length = 241 Score = 132 bits (333), Expect = 2e-29 Identities = 78/162 (48%), Positives = 103/162 (63%), Gaps = 10/162 (6%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 +LLA V G+ AF EL RRH +L+ +A T E+A DA+Q+A++S + A +FR Sbjct: 14 DLLARHVEGDPDAFGELVRRHRDRLWAVALRTLGDREEAADAVQDALVSAYRAAHTFRGQ 73 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLED-------VYPVPDATTRVETAILVRR-- 130 +AVT+WLHRI VNACLDR R+A SR T P++D + P A+ E L R+ Sbjct: 74 SAVTTWLHRITVNACLDRARKAASRKTSPVDDTERLEQLLEPHESASAPAERNDLHRQLL 133 Query: 131 -ALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 AL LP +QRAA+V VDMQGY +A+ A +L V GTVKSRC Sbjct: 134 EALGTLPHDQRAALVLVDMQGYPVAEAARILDVPTGTVKSRC 175 >tr|B1VPD7|B1VPD7_STRGG Tax_Id=455632 SubName: Full=Putative RNA polymerase ECF-subfamily sigma factor;[Streptomyces griseus subsp. griseus] Length = 238 Score = 132 bits (332), Expect = 2e-29 Identities = 75/162 (46%), Positives = 101/162 (62%), Gaps = 10/162 (6%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 +LLA VAG+ AF EL RH +L+ +A T E+A DA+Q+A+++ A +FR Sbjct: 13 DLLAQHVAGDPDAFGELVHRHRDRLWAVALRTLGDREEAADAVQDALVNAFRAAHTFRGQ 72 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLEDVYPVPDATTRVETAIL----------VR 129 +AVT+WLHRI VNACLDR+R+A SR T P++D + E+A ++ Sbjct: 73 SAVTTWLHRITVNACLDRVRKAASRKTSPVDDAERLDQLLEPHESAEAPAVRQDLHRQLQ 132 Query: 130 RALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 AL LP EQRAA+V VDMQGY +A+ A +L V GTVKSRC Sbjct: 133 EALATLPAEQRAALVLVDMQGYPVAEAASILEVPTGTVKSRC 174 >tr|C9N4J1|C9N4J1_9ACTO Tax_Id=591167 SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily;[Streptomyces flavogriseus ATCC 33331] Length = 233 Score = 131 bits (329), Expect = 4e-29 Identities = 78/162 (48%), Positives = 98/162 (60%), Gaps = 10/162 (6%) Query: 20 ELLAAFVAGEQLAFEELFRRHHRQLYHLARLTSQTPEDAEDALQEAMISVHNCAGSFRQD 79 +LL VAGE AF EL RRH +L+ +A T E+A DA+Q+A++S A +FR Sbjct: 13 DLLTQHVAGEPDAFGELVRRHRDRLWAVALRTLGDREEAADAVQDALVSAFRAAHTFRGQ 72 Query: 80 AAVTSWLHRIVVNACLDRLRRAKSRPTVPLED-------VYPVPDATTRVETAILVRR-- 130 +AVT+WLHRI VNACLDR R+ SR T P++D + P A E L R Sbjct: 73 SAVTTWLHRITVNACLDRARKTASRRTSPVDDTERLDQLMEPHESAEAPAERQDLNRELL 132 Query: 131 -ALMRLPVEQRAAVVAVDMQGYSIADTALLLGVAQGTVKSRC 171 AL LP EQRAA+V VDMQ Y +A+ A +L V GTVKSRC Sbjct: 133 AALATLPAEQRAALVLVDMQAYPVAEAARILDVPTGTVKSRC 174 Database: Amellifera_nr Posted date: Feb 5, 2010 5:10 AM Number of letters in database: 3,846,993,858 Number of sequences in database: 11,275,203 Lambda K H 0.323 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 11275203 Number of Hits to DB: 1,032,929,371 Number of extensions: 33667421 Number of successful extensions: 133782 Number of sequences better than 10.0: 7540 Number of HSP's gapped: 130849 Number of HSP's successfully gapped: 7543 Length of query: 195 Length of database: 3,846,993,858 Length adjustment: 130 Effective length of query: 65 Effective length of database: 2,381,217,468 Effective search space: 154779135420 Effective search space used: 154779135420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 76 (33.9 bits)