Gene Mb2512c in Mycobacterium bovis AF2122/97
Go to browser
virulence, detoxification, adaptation
information pathways
cell wall and cell processes
stable RNAs
insertion seqs and phages
PE/PPE
intermediary metabolism and respiration
unknown
regulatory proteins
conserved hypotheticals
lipid metabolism
pseudogenes
Gene summary information
Gene namePE_PGRS42d
Gene length825 bp
IdentifierMb2512c
Location 2762102 bp
Orthologs
M. tuberculosis H37RvRv2487c
General annotation
TypeCDS
FunctionUnknown
ProductPE-PGRS FAMILY PROTEIN [THIRD PART]
CommentsMb2512c, PE_PGRS42d, len: 274 aa. Similar to 3' end of Rv2487c, len: 694 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 274 aa overlap). Member of the Mycobacterium tuberculosis PE family, PGRS subfamily of Gly-rich proteins, similar to many e.g. AAK47245|MT2919 PE_PGRS family protein from Mycobacterium tuberculosis strain CDC1515 (663 aa), FASTA scores: opt: 2317, E(): 2.3e-84, (58.35% identity in 622 aa overlap); etc. REMARK-M.bovis-M.tuberculosis: In Mycobacterium tuberculosis strain H37Rv, PE_PGRS42 exists as a single gene. In Mycobacterium bovis, 2 frameshifts, the first due to a single base insertion (*-c) and the second due to a single base deletion (g-*) splits PE_PGRS42 into 3 parts,PE_PGRS42a and PE_PGRS42b and PE_PGRS42d.
Functional category
Mutant
Check for mutants available at TARGET website
Coordinates
TypeStartEndOrientation
CDS27621022762926-
Genomic sequence
Feature type Upstream flanking region (bp) Downstream flanking region (bp) Update
Bibliography
No article yet recorded