Gene IS1540-2 in Mycobacterium bovis AF2122/97
Go to browser
virulence, detoxification, adaptation
information pathways
cell wall and cell processes
stable RNAs
insertion seqs and phages
PE/PPE
intermediary metabolism and respiration
unknown
regulatory proteins
conserved hypotheticals
lipid metabolism
pseudogenes
Gene summary information
Gene nameIS1540-2
Gene length1164 bp
IdentifierIS1540-2
Location 3795344 bp
Protein summary information
Molecular mass43331.1 Da
Isoelectric point9.9312
Protein length387 amino acids
Orthologs
M. tuberculosis H37RvRv3430c
Cross-references
InterProIPR001584, IPR012337
UniProtKB/TrEMBLQ7TWI9
General annotation
TypeCDS
FunctionUnknown
ProductPOSSIBLE TRANSPOSASE
CommentsMb3460c, -, len: 387 aa. Equivalent to Rv3430c,len: 387 aa, from Mycobacterium tuberculosis strain H37Rv,(99.7% identity in 387 aa overlap). Possible IS1540 transposase, similar to several e.g. Q49592 transposase from Mycobacterium intracellulare (340 aa), FASTA scores: opt: 1377, E(): 1.6e-81, (64.2% identity in 338 aa overlap); similarity is lost at C-terminus due to possible frameshift after aa 297.
Functional categoryInsertion seqs and phages
Mutant
Check for mutants available at TARGET website
Coordinates
TypeStartEndOrientation
CDS37953443796507-
Genomic sequence
Feature type Upstream flanking region (bp) Downstream flanking region (bp) Update
Protein sequence
>Mycobacterium bovis AF2122-97|IS1540-2|IS1540-2
MIDTAIEEMIPLIGVRAACAATGRAPASYYRAHSKRLSAQSDTFTSTAVTDPSGPRESAQPRALSAAEREHVLAVLNSQRFADMAPAVVYATLLDEGIYLCSESTMYRLLRERGQTGDRRRQATHPAAVKPELVAHQPNSVWSWDITKLRGPAKWSYYYLYVILDIFSRYVVGWMVASRESKVLAERLIAQTLAAQHISADQLTLHADRGSSMSSKPVALLLADLGVTKSHSHPHTSNDNPLSEAQFKTLKYRPDFPKRFESIEAARVHCDRFFGWYNHEHKHSGIGLHTPADVHYGRADQIRRHRATVLDTAYRDHLERIRSQTTRATRATGLQRDQPTTEGGPADSINPRKSCLRNVDRFRPGLLDLPAPAPVDLRRLLPSGQIR
Bibliography
No article yet recorded