Gene MMAR_2003 in Mycobacterium marinum M
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virulence, detoxification, adaptation
information pathways
cell wall and cell processes
stable RNAs
insertion seqs and phages
PE/PPE
intermediary metabolism and respiration
unknown
regulatory proteins
conserved hypotheticals
lipid metabolism
pseudogenes
Gene summary information
Gene namesigB
Gene length1002 bp
IdentifierMMAR_2003
Location 2423873 bp
Protein summary information
Molecular mass37416.6 Da
Isoelectric point5.99
Protein length334 amino acids
Structural information
PFAMB2HLY9
Orthologs
M. tuberculosis H37RvRv2710
Cross-references
UniProtB2HLY9
Gene OntologyRegulation of transcription, dna-dependent, Sigma factor activity, Sequence-specific dna binding transcription factor activity, Dna-dependent transcription, initiation
Precomputed results
BLASTReport
General annotation
TypeCDS
Functionthe sigma factor is an initiation factor that promotes attachment of the RNA polymerase to specific initiation sites and then is released. may control the regulons of stationary phase and general stress resistance. seems to be regulated by SigH and SigE . seems to regulate KatG and the heat-shock response.
ProductRNA polymerase sigma factor SigB
Comments-
Functional categoryInformation pathways
Coordinates
TypeStartEndOrientation
CDS24238732424874-
Genomic sequence
Feature type Upstream flanking region (bp) Downstream flanking region (bp) Update
Protein sequence
>Mycobacterium marinum M|MMAR_2003|sigB
MTAQADREGEMAQPIARGIVGRVDSDLDAQSPAADLVRVYLNGIGKTALLNAEGEVELAKRIEAGLYAEHLLATRKRLGDNRKRELAAVVRDGAEARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAAESGIPVEKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMCKLRHGERADRLRSYAS
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